Query 021903
Match_columns 306
No_of_seqs 308 out of 1551
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 11:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021903.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021903hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 22.0 20 0.0015 22.6 1.8 12 183-194 2-13 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 20.0 12 0.0009 21.4 0.4 12 181-192 1-12 (34)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 8.5 1.7E+02 0.012 15.8 3.6 21 10-30 5-25 (32)
4 d3ctda1 a.80.1.2 (A:258-420) U 7.7 82 0.0059 24.1 1.9 18 79-96 22-39 (163)
5 d1vk5a_ a.220.1.1 (A:) Hypothe 7.0 1.2E+02 0.0089 21.6 2.4 11 243-253 8-18 (121)
6 d2csba4 a.60.2.4 (A:465-519) T 6.4 1.7E+02 0.012 17.5 2.4 21 225-248 9-30 (55)
7 d1v8ha1 b.1.18.19 (A:2-107) Su 5.3 44 0.0032 23.8 -1.0 10 179-188 23-32 (106)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 4.9 2.6E+02 0.019 14.4 2.8 8 243-250 16-23 (27)
9 d2c9wa1 a.271.1.1 (A:149-198) 4.9 1.7E+02 0.012 17.8 1.8 15 265-279 34-48 (50)
10 d1tzyc_ a.22.1.1 (C:) Histone 4.9 67 0.0049 22.4 -0.2 17 244-260 10-26 (95)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=22.04 E-value=20 Score=22.65 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=10.6
Q ss_pred CcchHHHHHHHH
Q 021903 183 HPNYFGEIFLWW 194 (306)
Q Consensus 183 HPnY~Ge~l~w~ 194 (306)
||||.++..=|+
T Consensus 2 Hp~~~~D~~K~F 13 (54)
T d1e7la1 2 HPNFVGDKSKEF 13 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 999999988775
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.97 E-value=12 Score=21.43 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=7.7
Q ss_pred ccCcchHHHHHH
Q 021903 181 SRHPNYFGEIFL 192 (306)
Q Consensus 181 sRHPnY~Ge~l~ 192 (306)
+|||.|--+++-
T Consensus 1 ~rhpkyKT~lC~ 12 (34)
T d1rgoa2 1 TRHPKYKTELCR 12 (34)
T ss_dssp CCCTTTTCSBCH
T ss_pred CCCCCccchhcc
Confidence 588887655443
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.53 E-value=1.7e+02 Score=15.79 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021903 10 LALTAIVTVGYQLLFFVITAL 30 (306)
Q Consensus 10 l~~~~~~~~~~~~~~~~~s~~ 30 (306)
.+-++++.|+..+++|.++.+
T Consensus 5 il~aa~lsfglifvgwglgal 25 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHHH
Confidence 455677888888888888654
No 4
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=7.73 E-value=82 Score=24.13 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=13.2
Q ss_pred HHHHHhhhCcCcchhhHH
Q 021903 79 LFLLMRILNWGEDRRFDE 96 (306)
Q Consensus 79 ~~l~~R~~~~~eD~Ry~~ 96 (306)
.|++.|.+..|||++|-.
T Consensus 22 ly~larml~~Gedp~~i~ 39 (163)
T d3ctda1 22 LYWLANMVEAGEDPNFIF 39 (163)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCchHHHH
Confidence 455667778899998753
No 5
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.04 E-value=1.2e+02 Score=21.65 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.7
Q ss_pred hHHHHHHhhCC
Q 021903 243 PAYRLYKKTTS 253 (306)
Q Consensus 243 ~~Y~~Y~krt~ 253 (306)
+.|++|+|+.|
T Consensus 8 emYQ~yMk~iP 18 (121)
T d1vk5a_ 8 EMYQDYMKQVP 18 (121)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 78999999975
No 6
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=6.36 E-value=1.7e+02 Score=17.49 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=12.9
Q ss_pred HhCchHHH-HHHHHHcCCchHHHHH
Q 021903 225 ISGIPLLE-ESADKKFGNMPAYRLY 248 (306)
Q Consensus 225 ~s~i~~~E-~~l~~kyG~~~~Y~~Y 248 (306)
+.|+..+. +++++||| .|..-
T Consensus 9 irgidreraerllkkyg---gyskv 30 (55)
T d2csba4 9 IRGIDRERAERLLKKYG---GYSKV 30 (55)
T ss_dssp STTCCHHHHHHHHHHHT---SHHHH
T ss_pred eecccHHHHHHHHHHhc---ChhHH
Confidence 34565553 46889997 55443
No 7
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=5.28 E-value=44 Score=23.79 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=7.6
Q ss_pred ccccCcchHH
Q 021903 179 KYSRHPNYFG 188 (306)
Q Consensus 179 ~~sRHPnY~G 188 (306)
-.++|||..|
T Consensus 23 ~li~HPMeTG 32 (106)
T d1v8ha1 23 VVAQHPNEPG 32 (106)
T ss_dssp EEECCCCBCS
T ss_pred EEEECCCccc
Confidence 4678888776
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.95 E-value=2.6e+02 Score=14.43 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=4.7
Q ss_pred hHHHHHHh
Q 021903 243 PAYRLYKK 250 (306)
Q Consensus 243 ~~Y~~Y~k 250 (306)
.+|++|++
T Consensus 16 aayqqykr 23 (27)
T d2e74g1 16 AAYQQYKR 23 (27)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhcC
Confidence 45666654
No 9
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.90 E-value=1.7e+02 Score=17.84 Aligned_cols=15 Identities=40% Similarity=0.383 Sum_probs=12.3
Q ss_pred CChHHHHHHhHhccc
Q 021903 265 NLPWWLKTILFELPL 279 (306)
Q Consensus 265 ~~~~~~k~~~~~~p~ 279 (306)
++|..+|+++-|+|.
T Consensus 34 PLP~~Lk~YL~eY~y 48 (50)
T d2c9wa1 34 PLPTRLKDYLEEYKF 48 (50)
T ss_dssp SSCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHcCC
Confidence 588999998888874
No 10
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=4.89 E-value=67 Score=22.39 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=13.7
Q ss_pred HHHHHHhhCCcccccCC
Q 021903 244 AYRLYKKTTSPLIPLPP 260 (306)
Q Consensus 244 ~Y~~Y~krt~~~iP~~~ 260 (306)
|=+.||+.|.-+||..|
T Consensus 10 EIRk~Qkst~lLIpk~p 26 (95)
T d1tzyc_ 10 EIRRYQKSTELLIRKLP 26 (95)
T ss_dssp HHHHHHHCCSCCSCHHH
T ss_pred HHHHHhCCccccccccc
Confidence 45788999999998755
Done!