BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021905
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 39 LTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSR 98
L G H +IL + SPV + + + +V I V + F+YT +
Sbjct: 30 LCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV-EINDVEPEVFKEMMCFIYTGK 88
Query: 99 CTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDL 155
++K LLA + Y++ +LK C L L+++N ++L LA L A L
Sbjct: 89 APN--LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Query: 42 GGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTE 101
G H +IL + SPV + + + S + + I V + F+YT +
Sbjct: 182 AGQEFQAHKAILAARSPVFSAMFEHEMEE-SKKNRVEINDVEPEVFKEMMCFIYTGKAPN 240
Query: 102 EEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMK 161
++K LLA + Y++ +LK C L L+++N ++L LA L A L + +
Sbjct: 241 --LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVD 298
Query: 162 LAASRFKAVEKTEG 175
V +T G
Sbjct: 299 FINYHATDVLETSG 312
>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera
Protein
Length = 121
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 254 TCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 304
+CQ ++ +++H CK++ NGGC CK++ L H+ C Q + C VP C
Sbjct: 35 SCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHC-QENKCPVPFC 84
>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By
P300
Length = 90
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 254 TCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 304
+CQ ++ +++H CK++ NGGC CK++ L H+ C Q + C VP C
Sbjct: 35 SCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHC-QENKCPVPFC 84
>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300
Length = 114
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 254 TCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 304
+CQ ++ +++H CK++ NGGC CK++ L H+ C Q + C VP C
Sbjct: 35 SCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHC-QENKCPVPFC 84
>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The
Transcriptional Adaptor Protein Cbp
Length = 88
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 252 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 304
+CQ ++ +++H CK++ NGGC CK++ L H+ C Q + C VP C
Sbjct: 31 LPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHC-QENKCPVPFC 82
>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex
pdb|2KJE|A Chain A, Nmr Structure Of Cbp Taz2 And Adenoviral E1a Complex
Length = 92
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 252 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 304
+CQ ++ +++H CK++ NGGC CK++ L H+ C Q + C VP C
Sbjct: 30 LPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHC-QENKCPVPFC 81
>pdb|3P57|P Chain P, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2 On
Dna
Length = 112
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 252 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 304
+CQ ++ +++H CK++ NGGC CK++ L H+ C Q + C VP C
Sbjct: 32 LPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHC-QENKCPVPFC 83
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 3/137 (2%)
Query: 39 LTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSR 98
L G H +IL + SPV + + S + + I V F+YT +
Sbjct: 39 LCVAGQEFQAHKAILAARSPVFSAXFEHEXE-ESKKNRVEINDVEPEVFKEXXCFIYTGK 97
Query: 99 CTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLR 158
+ LLA + Y++ +LK C L L+++N ++L LA L A L +
Sbjct: 98 APNLDKXA--DDLLAAADKYALERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQ 155
Query: 159 CMKLAASRFKAVEKTEG 175
+ V +T G
Sbjct: 156 AVDFINYHATDVLETSG 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,575,980
Number of Sequences: 62578
Number of extensions: 323367
Number of successful extensions: 595
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 10
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)