Query 021905
Match_columns 305
No_of_seqs 363 out of 1692
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1778 CREB binding protein/P 100.0 3.8E-35 8.3E-40 264.5 7.6 259 35-305 27-286 (319)
2 PHA02713 hypothetical protein; 100.0 2.6E-27 5.6E-32 233.2 19.1 165 21-192 10-177 (557)
3 PHA03098 kelch-like protein; P 99.9 8.1E-26 1.8E-30 222.2 18.6 142 34-182 10-152 (534)
4 PHA02790 Kelch-like protein; P 99.9 6.8E-26 1.5E-30 219.8 16.2 141 34-180 23-167 (480)
5 KOG4441 Proteins containing BT 99.9 1.6E-25 3.5E-30 220.2 19.0 156 23-182 23-181 (571)
6 KOG4350 Uncharacterized conser 99.9 1.5E-25 3.2E-30 202.7 10.8 166 22-192 30-199 (620)
7 smart00551 ZnF_TAZ TAZ zinc fi 99.9 2.7E-23 5.9E-28 150.8 8.8 77 211-305 1-79 (79)
8 KOG2075 Topoisomerase TOP1-int 99.8 6.3E-19 1.4E-23 163.1 17.6 170 10-182 88-265 (521)
9 KOG4591 Uncharacterized conser 99.8 1E-18 2.2E-23 145.0 10.0 156 28-191 58-218 (280)
10 PF00651 BTB: BTB/POZ domain; 99.8 2E-18 4.3E-23 134.4 7.8 100 33-134 10-110 (111)
11 smart00225 BTB Broad-Complex, 99.7 1.4E-16 3E-21 117.9 9.8 90 35-128 1-90 (90)
12 KOG0783 Uncharacterized conser 99.7 1E-16 2.2E-21 156.0 9.3 147 35-182 712-862 (1267)
13 KOG4682 Uncharacterized conser 99.6 5.5E-16 1.2E-20 140.8 10.1 144 33-181 69-216 (488)
14 PF02135 zf-TAZ: TAZ zinc fing 99.4 7.8E-14 1.7E-18 101.1 3.7 72 216-304 2-75 (75)
15 KOG0511 Ankyrin repeat protein 98.9 9E-09 1.9E-13 93.6 9.9 134 44-180 301-443 (516)
16 KOG0783 Uncharacterized conser 98.6 2.4E-08 5.3E-13 98.5 4.8 110 18-128 536-682 (1267)
17 KOG2838 Uncharacterized conser 98.6 1E-07 2.2E-12 83.5 5.9 122 22-143 221-396 (401)
18 KOG2716 Polymerase delta-inter 98.3 5.2E-06 1.1E-10 72.2 9.7 97 36-134 7-104 (230)
19 KOG1987 Speckle-type POZ prote 98.1 3.6E-06 7.9E-11 76.8 5.7 145 42-190 108-257 (297)
20 KOG2838 Uncharacterized conser 98.1 4.6E-06 1E-10 73.2 5.6 104 18-122 112-220 (401)
21 smart00512 Skp1 Found in Skp1 97.9 8.6E-05 1.9E-09 57.1 8.2 61 35-96 3-63 (104)
22 KOG3473 RNA polymerase II tran 97.8 0.00014 3E-09 54.0 7.6 83 35-119 18-111 (112)
23 PF11822 DUF3342: Domain of un 97.6 0.00016 3.5E-09 65.6 6.2 89 44-134 14-103 (317)
24 PF07707 BACK: BTB And C-termi 97.5 0.00024 5.2E-09 53.9 5.7 50 140-192 1-50 (103)
25 PF03931 Skp1_POZ: Skp1 family 97.5 0.00041 9E-09 48.0 6.3 57 36-96 3-59 (62)
26 PF02214 BTB_2: BTB/POZ domain 97.5 6E-05 1.3E-09 56.7 1.8 89 36-127 1-94 (94)
27 KOG1724 SCF ubiquitin ligase, 97.2 0.0039 8.4E-08 51.7 9.8 99 35-135 6-127 (162)
28 smart00875 BACK BTB And C-term 96.9 0.0016 3.5E-08 48.8 4.5 50 140-192 1-50 (101)
29 KOG0511 Ankyrin repeat protein 96.8 0.0029 6.2E-08 58.4 6.0 87 35-126 151-237 (516)
30 KOG2714 SETA binding protein S 96.1 0.02 4.3E-07 53.9 7.5 87 36-125 13-102 (465)
31 KOG1665 AFH1-interacting prote 95.7 0.023 5E-07 49.0 5.5 92 35-129 10-105 (302)
32 COG5201 SKP1 SCF ubiquitin lig 95.3 0.15 3.3E-06 40.1 8.4 98 35-136 3-123 (158)
33 smart00551 ZnF_TAZ TAZ zinc fi 92.3 0.32 7E-06 35.3 4.7 46 257-305 9-56 (79)
34 KOG2715 Uncharacterized conser 91.7 0.65 1.4E-05 38.4 6.4 97 35-134 22-121 (210)
35 PF02135 zf-TAZ: TAZ zinc fing 91.3 0.41 9E-06 34.2 4.4 45 218-280 30-74 (75)
36 PF11822 DUF3342: Domain of un 88.8 0.4 8.8E-06 43.9 3.2 64 134-199 71-134 (317)
37 PF01466 Skp1: Skp1 family, di 87.7 1.1 2.4E-05 32.2 4.5 34 106-139 14-47 (78)
38 KOG2723 Uncharacterized conser 81.5 3.9 8.3E-05 35.7 5.6 92 36-129 11-104 (221)
39 KOG2075 Topoisomerase TOP1-int 80.2 3.9 8.4E-05 39.5 5.6 58 135-195 185-247 (521)
40 KOG3840 Uncharaterized conserv 76.6 2.4 5.3E-05 38.5 3.0 85 35-121 97-185 (438)
41 PF00651 BTB: BTB/POZ domain; 68.0 8.6 0.00019 28.7 4.0 30 137-166 81-110 (111)
42 PF07707 BACK: BTB And C-termi 56.8 40 0.00086 24.7 5.9 26 109-134 2-27 (103)
43 TIGR02183 GRXA Glutaredoxin, G 48.5 12 0.00025 27.2 1.6 16 274-289 8-23 (86)
44 PHA03098 kelch-like protein; P 46.8 36 0.00077 33.5 5.3 33 135-167 73-105 (534)
45 PHA02713 hypothetical protein; 43.1 45 0.00097 33.4 5.3 34 134-167 90-123 (557)
46 PRK11200 grxA glutaredoxin 1; 37.5 25 0.00053 25.2 1.9 15 274-288 9-23 (85)
47 COG3357 Predicted transcriptio 37.0 14 0.00031 27.3 0.5 19 265-283 68-86 (97)
48 TIGR02425 decarb_PcaC 4-carbox 36.9 2E+02 0.0044 22.5 10.4 81 78-158 27-111 (123)
49 PF00462 Glutaredoxin: Glutare 36.8 28 0.00061 22.9 2.0 16 274-289 7-22 (60)
50 cd03029 GRX_hybridPRX5 Glutare 35.5 29 0.00062 23.9 1.9 16 274-289 9-24 (72)
51 PHA02790 Kelch-like protein; P 34.7 49 0.0011 32.4 4.0 32 135-166 88-119 (480)
52 cd03419 GRX_GRXh_1_2_like Glut 33.0 33 0.00071 24.0 1.9 18 274-291 8-25 (82)
53 cd03027 GRX_DEP Glutaredoxin ( 33.0 32 0.00069 23.8 1.8 16 274-289 9-24 (73)
54 TIGR02190 GlrX-dom Glutaredoxi 30.8 37 0.00081 23.9 1.9 15 274-288 16-30 (79)
55 TIGR02189 GlrX-like_plant Glut 29.4 40 0.00087 25.2 1.9 16 274-289 16-31 (99)
56 cd02066 GRX_family Glutaredoxi 29.2 47 0.001 21.9 2.2 17 273-289 7-23 (72)
57 KOG3612 PHD Zn-finger protein 27.7 3.3E+02 0.0072 27.1 8.1 74 178-274 497-570 (588)
58 KOG1941 Acetylcholine receptor 27.2 4.7E+02 0.01 25.1 8.7 60 214-284 357-416 (518)
59 smart00875 BACK BTB And C-term 26.0 83 0.0018 22.6 3.2 26 109-134 2-27 (101)
60 KOG4682 Uncharacterized conser 25.9 57 0.0012 31.2 2.6 30 105-134 172-201 (488)
61 TIGR02180 GRX_euk Glutaredoxin 25.7 51 0.0011 23.0 1.9 17 274-290 7-23 (84)
62 TIGR02181 GRX_bact Glutaredoxi 25.1 55 0.0012 22.8 1.9 16 274-289 7-22 (79)
63 COG0695 GrxC Glutaredoxin and 24.7 53 0.0011 23.5 1.8 15 273-287 8-22 (80)
64 KOG4350 Uncharacterized conser 24.6 1.6E+02 0.0035 28.3 5.2 59 76-134 107-176 (620)
65 PF02519 Auxin_inducible: Auxi 24.6 1.8E+02 0.0038 22.0 4.7 59 33-94 38-99 (100)
66 COG5175 MOT2 Transcriptional r 24.2 74 0.0016 29.6 2.9 36 239-283 28-63 (480)
67 PF13098 Thioredoxin_2: Thiore 23.3 55 0.0012 24.3 1.7 14 274-287 15-28 (112)
68 PF02637 GatB_Yqey: GatB domai 23.1 3.1E+02 0.0066 21.9 6.2 72 81-171 39-110 (148)
69 TIGR02196 GlrX_YruB Glutaredox 23.1 61 0.0013 21.5 1.8 15 274-288 8-22 (74)
70 cd02976 NrdH NrdH-redoxin (Nrd 22.6 66 0.0014 21.3 1.9 15 274-288 8-22 (73)
71 PRK10329 glutaredoxin-like pro 22.6 61 0.0013 23.2 1.8 15 273-287 8-22 (81)
72 KOG4390 Voltage-gated A-type K 22.1 7.1E+02 0.015 23.9 9.0 88 35-128 41-132 (632)
73 cd02973 TRX_GRX_like Thioredox 21.8 64 0.0014 21.5 1.7 18 274-291 9-26 (67)
74 PF01466 Skp1: Skp1 family, di 21.3 2.9E+02 0.0063 19.5 5.1 35 134-168 10-44 (78)
75 KOG4441 Proteins containing BT 21.1 1.6E+02 0.0035 29.6 4.9 32 135-166 102-133 (571)
76 PF07219 HemY_N: HemY protein 21.1 2.2E+02 0.0047 21.5 4.7 39 186-224 32-70 (108)
77 PRK10638 glutaredoxin 3; Provi 21.1 72 0.0016 22.6 1.9 17 273-289 9-25 (83)
78 TIGR02200 GlrX_actino Glutared 21.0 81 0.0018 21.4 2.1 16 274-289 8-23 (77)
79 KOG3713 Voltage-gated K+ chann 20.8 3.7E+02 0.0081 26.3 7.0 65 35-102 32-107 (477)
No 1
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=100.00 E-value=3.8e-35 Score=264.53 Aligned_cols=259 Identities=43% Similarity=0.675 Sum_probs=229.2
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL 114 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~l 114 (305)
|+.++..++..+.+|+.+|+..|+.|..+.... ...+..+.+.+.+++..++..+.+++|.+ ++..++......++.+
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQP-CRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLAL 104 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhh-cchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhh
Confidence 555555467789999999999999998887666 33245566888899999999999999998 6655556788999999
Q ss_pred HHhcCChHHHHHHHHHHhh-cCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhccccChHHHHHHHHH
Q 021905 115 SHVYSVPQLKQRCTKGLGE-RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQF 193 (305)
Q Consensus 115 A~~~~v~~Lk~~c~~~L~~-~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~~~p~l~~ell~~ 193 (305)
.+.|.++.++..+...+.. .++..|+..++..+..|+.+.|.......+...|.....++.|..+....+.+.. ...
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c~~~~--~~~ 182 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPICKLEV--LTA 182 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCcccccc--ccc
Confidence 9999999999999888877 4889999999999999999999999999999999999999999888877766555 666
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhhCCcccCCccCCCCCCCCCCCCCcchHHHHHHHHhhhhcCcccC
Q 021905 194 MDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVN 273 (305)
Q Consensus 194 ~~~~~~~~~~~~r~~~~~~~~~~L~e~~~~l~h~~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~h~~~c~~~~~ 273 (305)
+........+..+...++..|.|+.++|++ +++||.++||..+..+.++++|+ |+.|.+||+|++|+.+||+|
T Consensus 183 ~~c~~~~d~d~~~~~~~k~~h~h~~~~~~~----~~~~~~~~~~~~~~i~~~~~~C~-~~~C~~~k~lirH~~~Ck~R-- 255 (319)
T KOG1778|consen 183 WHCEVCPDYDRCRACEEKPLHPHLYEAMES----CTDGCATIGPRNKSINRRDANCS-YPSCNGLKRLIRHFRGCKLR-- 255 (319)
T ss_pred cccccCCchhhhhcccCCCCCCcchhcccc----cccccccccchhhhhccCCCCCC-CchhHHHHHHHHHHHHHHhc--
Confidence 666677777888888888889999999998 99999999999998887789999 99999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCCCCcCCCCC
Q 021905 274 GGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCR 305 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h~~~c~~~~~c~~p~c~ 305 (305)
|||++||+||||++|||++|++++ |+||+|+
T Consensus 256 ~gC~iCk~m~~L~~lha~~c~~~~-C~vP~c~ 286 (319)
T KOG1778|consen 256 GGCPICKRLWQLLELHARHCDDSK-CKVPLCR 286 (319)
T ss_pred cCCchHHHHHHHHHHHHHHccccc-CCCCCCc
Confidence 999999999999999999999998 9999996
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=2.6e-27 Score=233.21 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=147.7
Q ss_pred cchHhhHhhccCCC---CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCC
Q 021905 21 TTLTKENAPAFYEP---DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTS 97 (305)
Q Consensus 21 s~l~~dl~~ll~~~---DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~ 97 (305)
..+...|.+|++++ ||+|.+++|++|+|||.|||++|+||++||+++++|.+.+..|.|.++++++|+.+|+|+||+
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 35667888887764 999999548999999999999999999999999987545788999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhh
Q 021905 98 RCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWK 177 (305)
Q Consensus 98 ~~~~~~~~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~ 177 (305)
.+ + .+++.+||.+|++|+++.|++.|.+||.+.++++||+.++.++..+....|.+.+.+||.+||.++.++++|.
T Consensus 90 ~i--~--~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~ 165 (557)
T PHA02713 90 HI--S--SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFK 165 (557)
T ss_pred CC--C--HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhh
Confidence 74 4 3799999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred hccccChHHHHHHHH
Q 021905 178 FLQDHDPWLELQILQ 192 (305)
Q Consensus 178 ~L~~~~p~l~~ell~ 192 (305)
.|+.+ .+.+++.
T Consensus 166 ~L~~~---~l~~lL~ 177 (557)
T PHA02713 166 KTVFE---ILFDIIS 177 (557)
T ss_pred hCCHH---HHHHHhc
Confidence 88755 4444444
No 3
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=8.1e-26 Score=222.24 Aligned_cols=142 Identities=17% Similarity=0.273 Sum_probs=134.3
Q ss_pred CCEEEEec-CCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 021905 34 PDVQILTS-GGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLL 112 (305)
Q Consensus 34 ~DV~l~v~-~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll 112 (305)
+||+|.+. +|++|+|||.||+++|+||++||.++++ +..|.|.+ ++++|+.+|+|+|||.+.++. +++.+|+
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~--~~~~~ll 82 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLNI-DYDSFNEVIKYIYTGKINITS--NNVKDIL 82 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEecC-CHHHHHHHHHHhcCCceEEcH--HHHHHHH
Confidence 59999873 8899999999999999999999999876 45699999 999999999999999998886 8899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhcccc
Q 021905 113 ALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDH 182 (305)
Q Consensus 113 ~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~~ 182 (305)
.+|++|+++.|+..|+++|...++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|..|+.+
T Consensus 83 ~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~ 152 (534)
T PHA03098 83 SIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKN 152 (534)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=6.8e-26 Score=219.81 Aligned_cols=141 Identities=17% Similarity=0.241 Sum_probs=130.1
Q ss_pred CCEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEec--CCCCHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 021905 34 PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPI--LGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHL 111 (305)
Q Consensus 34 ~DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l--~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~L 111 (305)
.||++.+ |++|+|||.|||+.||||++||.++++|. .. .|.+ .++++++++.+|+|+|||++.++. +++.+|
T Consensus 23 ~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~~~~~Es-~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~--~nV~~l 96 (480)
T PHA02790 23 KTIIEAI--GGNIIVNSTILKKLSPYFRTHLRQKYTKN-KD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS--HNVVNL 96 (480)
T ss_pred ceEEEEc--CcEEeeehhhhhhcCHHHHHHhcCCcccc-cc-ceEEEecCcCHHHHHHHHHhheeeeEEEec--ccHHHH
Confidence 4888865 55999999999999999999999999984 43 4554 499999999999999999999997 899999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCc--hhhhhcc
Q 021905 112 LALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKT--EGWKFLQ 180 (305)
Q Consensus 112 l~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~--~~f~~L~ 180 (305)
+.+|++|+++.+++.|.+||.+.|+++||++++.+|+.|++.+|.+.+.+||.+||.+|.++ ++|..|+
T Consensus 97 l~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 97 LRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999986 8897765
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=220.19 Aligned_cols=156 Identities=23% Similarity=0.329 Sum_probs=145.0
Q ss_pred hHhhHhhccCC---CCEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCC
Q 021905 23 LTKENAPAFYE---PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRC 99 (305)
Q Consensus 23 l~~dl~~ll~~---~DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~ 99 (305)
+-+.+..+.+. .||++.+ ++++|+|||.|||+.||||++||.++++| +.+..|.|.++++++++.+++|+||+.+
T Consensus 23 ~l~~l~~lr~~~~lcDv~L~v-~~~~~~aHR~VLAa~S~YFraMFt~~l~e-~~~~~i~l~~v~~~~l~~ll~y~Yt~~i 100 (571)
T KOG4441|consen 23 LLQGLNELREEGLLCDVTLLV-GDREFPAHRVVLAACSPYFRAMFTSGLKE-SKQKEINLEGVDPETLELLLDYAYTGKL 100 (571)
T ss_pred HHHHHHHHHHhCCCceEEEEE-CCeeechHHHHHHhccHHHHHHhcCCccc-ccceEEEEecCCHHHHHHHHHHhhcceE
Confidence 33344444443 4999999 88999999999999999999999999999 6899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhc
Q 021905 100 TEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFL 179 (305)
Q Consensus 100 ~~~~~~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L 179 (305)
.++. +++.+|+.+|+.||++.+.+.|.+||...++++||+.+..+|+.|++.+|.+.+..||.+||.++..+++|..|
T Consensus 101 ~i~~--~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L 178 (571)
T KOG4441|consen 101 EISE--DNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLL 178 (571)
T ss_pred Eech--HhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCC
Confidence 9997 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 021905 180 QDH 182 (305)
Q Consensus 180 ~~~ 182 (305)
+.+
T Consensus 179 ~~~ 181 (571)
T KOG4441|consen 179 SLE 181 (571)
T ss_pred CHH
Confidence 765
No 6
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=1.5e-25 Score=202.74 Aligned_cols=166 Identities=21% Similarity=0.318 Sum_probs=150.5
Q ss_pred chHhhHhhccCC---CCEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCC
Q 021905 22 TLTKENAPAFYE---PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSR 98 (305)
Q Consensus 22 ~l~~dl~~ll~~---~DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~ 98 (305)
.++.++..+|-+ +||+|++ ++++|+|||.|||+||.||++|+.++|.| +.+..|++.+.+.++|+.+|+|||||+
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvv-e~~rfpAHRvILAaRs~yFRAlLYgGm~E-s~q~~ipLq~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVV-EDTRFPAHRVILAARSSYFRALLYGGMQE-SHQQLIPLQETNSEAFRALLRYIYTGK 107 (620)
T ss_pred chhHHHHHHhhcCcccceEEEE-eccccchhhhhHHHHHHHHHHHHhhhhhh-hhhcccccccccHHHHHHHHHHHhhcc
Confidence 356777777664 6999999 77999999999999999999999999999 578999999999999999999999999
Q ss_pred CCCcch-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhh
Q 021905 99 CTEEEM-EKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWK 177 (305)
Q Consensus 99 ~~~~~~-~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~ 177 (305)
+..... ++..++.|.+|++|+++.|.....+++...+..+|++.++..|..|++++|.+.|+.|.-+|..+++..++|.
T Consensus 108 ~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn 187 (620)
T KOG4350|consen 108 IDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFN 187 (620)
T ss_pred eecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchh
Confidence 986543 4788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccChHHHHHHHH
Q 021905 178 FLQDHDPWLELQILQ 192 (305)
Q Consensus 178 ~L~~~~p~l~~ell~ 192 (305)
.|+++ -+.|++.
T Consensus 188 ~LSk~---sL~e~l~ 199 (620)
T KOG4350|consen 188 RLSKD---SLKELLA 199 (620)
T ss_pred hhhHH---HHHHHHh
Confidence 99876 4444443
No 7
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=99.89 E-value=2.7e-23 Score=150.84 Aligned_cols=77 Identities=38% Similarity=0.809 Sum_probs=72.1
Q ss_pred hhhhhhHHHHHHHHHHHhhhCCcccCCccCCCCCCCCCCCCCcchHHHHHHHHhhhhcCcc--cCCCChhHHHHHHHHHH
Q 021905 211 QGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKR--VNGGCLRCKRMWQLLRL 288 (305)
Q Consensus 211 ~~~~~~L~e~~~~l~h~~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~h~~~c~~~--~~~~c~~c~~~~~l~~~ 288 (305)
+.+|.+|.++|++|+|+++ |+++| ++|. +++|++||.|++|+++|+.| .+|||.+||+||+
T Consensus 1 ~~~~~~lq~~l~~L~Ha~~--C~~~~----------~~C~-~~~C~~~k~L~~H~~~C~~~~C~~~~C~~ck~~~~---- 63 (79)
T smart00551 1 QTRYKQLQRWLELLVHARR--CKARE----------AKCQ-YPNCKTMKKLLRHMDSCKVRKCKYGYCASCKQLWQ---- 63 (79)
T ss_pred CcHHHHHHHHHHHHHHHHh--CCCCC----------CCCC-CchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----
Confidence 3579999999999999999 98663 6899 99999999999999999999 8999999999999
Q ss_pred HHhcCCCCCCCcCCCCC
Q 021905 289 HSSMCEQSDSCRVPLCR 305 (305)
Q Consensus 289 h~~~c~~~~~c~~p~c~ 305 (305)
|+++|++.+ |+||+|+
T Consensus 64 H~k~C~~~~-C~Vc~c~ 79 (79)
T smart00551 64 HSKHCKDSN-CPVCKCV 79 (79)
T ss_pred HHHhcCCCC-CCCCCCC
Confidence 999999988 9999996
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.82 E-value=6.3e-19 Score=163.15 Aligned_cols=170 Identities=25% Similarity=0.378 Sum_probs=148.0
Q ss_pred CCCCCCcCCCccchHhhHhhccCC---CCEEEEecC----CcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCC
Q 021905 10 IAGHPDVHSPVTTLTKENAPAFYE---PDVQILTSG----GLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGV 82 (305)
Q Consensus 10 ~~~~~~~~~p~s~l~~dl~~ll~~---~DV~l~v~~----g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v 82 (305)
+.+.+.-.-+.+++..-...++++ +||.|++++ -+.|++||.||+..|.+|.+||++++.+. ...+|.++|+
T Consensus 88 ~~~~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~-~s~ei~lpdv 166 (521)
T KOG2075|consen 88 ERGIPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED-ASLEIRLPDV 166 (521)
T ss_pred cccCcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc-cCceeecCCc
Confidence 334444555566666666667765 499999973 27899999999999999999999998884 6788999999
Q ss_pred CHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHH-HhhCCChHHHHHHHH
Q 021905 83 PCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQL-ARLCDAPDLYLRCMK 161 (305)
Q Consensus 83 ~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~-A~~~~~~~L~~~c~~ 161 (305)
.+.+|..+|+|+|++.+.+.. ++++.++.+|++|.++.|.+.|.++|...+.+.|++..+.- |..++-++|...|++
T Consensus 167 epaaFl~~L~flYsdev~~~~--dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e 244 (521)
T KOG2075|consen 167 EPAAFLAFLRFLYSDEVKLAA--DTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLE 244 (521)
T ss_pred ChhHhHHHHHHHhcchhhhhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 999999999999999888886 99999999999999999999999999999888887766655 999999999999999
Q ss_pred HHHHhHHHHhCchhhhhcccc
Q 021905 162 LAASRFKAVEKTEGWKFLQDH 182 (305)
Q Consensus 162 ~i~~nf~~v~~~~~f~~L~~~ 182 (305)
-|..+|+..+..++|..+...
T Consensus 245 ~id~~~~~al~~EGf~did~~ 265 (521)
T KOG2075|consen 245 VIDKSFEDALTPEGFCDIDST 265 (521)
T ss_pred HhhhHHHhhhCccceeehhhH
Confidence 999999999999999888633
No 9
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.78 E-value=1e-18 Score=145.02 Aligned_cols=156 Identities=19% Similarity=0.336 Sum_probs=131.4
Q ss_pred hhccCC---CCEEEEecC--CcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCc
Q 021905 28 APAFYE---PDVQILTSG--GLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEE 102 (305)
Q Consensus 28 ~~ll~~---~DV~l~v~~--g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~ 102 (305)
.++++. +|++|.++| .+.|+|||.|||+||++.+- .++-.| ......+.|+++++|...++||||+.++..
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf--aN~~de--kse~~~~dDad~Ea~~t~iRWIYTDEidfk 133 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF--ANGGDE--KSEELDLDDADFEAFHTAIRWIYTDEIDFK 133 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhh--ccCCCc--chhhhcccccCHHHHHHhheeeeccccccc
Confidence 355553 699999953 37799999999999999863 333222 345678889999999999999999999987
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhcccc
Q 021905 103 EMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDH 182 (305)
Q Consensus 103 ~~~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~~ 182 (305)
..++++.++..+|+.|+++.|++.|+.-+...++++||+.+|++|+..++..|...|...|+.++..+- .++|.+|+..
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqMs~a 212 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQMSAA 212 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhccHH
Confidence 667899999999999999999999999999999999999999999999999999999999999988774 5678887633
Q ss_pred ChHHHHHHH
Q 021905 183 DPWLELQIL 191 (305)
Q Consensus 183 ~p~l~~ell 191 (305)
++..++
T Consensus 213 ---LLYklI 218 (280)
T KOG4591|consen 213 ---LLYKLI 218 (280)
T ss_pred ---HHHHHH
Confidence 544443
No 10
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.76 E-value=2e-18 Score=134.35 Aligned_cols=100 Identities=29% Similarity=0.416 Sum_probs=86.2
Q ss_pred CCCEEEEecCCcEEehhHHHHHhccHHHHHHhcCC-CCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 021905 33 EPDVQILTSGGLRIPVHASILVSASPVLENIIDRP-RKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHL 111 (305)
Q Consensus 33 ~~DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~-~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~L 111 (305)
.+|++|.+++|++|+|||.||+++|+||+.||.++ +.+ .....|.++++++++|..+++|+|++.+.++ ..+++.++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~~l 87 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKE-STVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVEEL 87 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTT-SSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHHHH
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhccccccccc-ccccccccccccccccccccccccCCcccCC-HHHHHHHH
Confidence 46999999448999999999999999999999998 444 3445799999999999999999999999887 13889999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhc
Q 021905 112 LALSHVYSVPQLKQRCTKGLGER 134 (305)
Q Consensus 112 l~lA~~~~v~~Lk~~c~~~L~~~ 134 (305)
+.+|++|+++.|+..|..+|.+.
T Consensus 88 l~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 88 LELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 11
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.69 E-value=1.4e-16 Score=117.91 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=82.5
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL 114 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~l 114 (305)
||+|.+ +|++|++||.+|+++|+||+.||.+++.+ +....|.++++++++|+.+|+|+|++.+..+. .++.+++.+
T Consensus 1 dv~i~v-~~~~~~~h~~iL~~~s~~f~~~~~~~~~~-~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVV-GGKKFKAHKAVLAACSPYFKALFSGDFKE-SKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLEL 76 (90)
T ss_pred CeEEEE-CCEEEehHHHHHhhcCHHHHHHHcCCCcc-CCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHH
Confidence 789988 88999999999999999999999998766 36778999999999999999999999988876 689999999
Q ss_pred HHhcCChHHHHHHH
Q 021905 115 SHVYSVPQLKQRCT 128 (305)
Q Consensus 115 A~~~~v~~Lk~~c~ 128 (305)
|++|+++.|++.|+
T Consensus 77 a~~~~~~~l~~~c~ 90 (90)
T smart00225 77 ADYLQIPGLVELCE 90 (90)
T ss_pred HHHHCcHHHHhhhC
Confidence 99999999998874
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.68 E-value=1e-16 Score=155.98 Aligned_cols=147 Identities=15% Similarity=0.294 Sum_probs=124.3
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCC-CCC---CcchHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTS-RCT---EEEMEKYGIH 110 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~-~~~---~~~~~~~~~~ 110 (305)
|+.|+..||+.++||+.+|++|++||..||..-|.|. +.-.+....+..+.+..+|+|+|+. ... .....+++.+
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~-sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~ 790 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMES-SSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFE 790 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhh-ccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHH
Confidence 8888888999999999999999999999999998884 4434444455599999999999954 322 1122478999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhcccc
Q 021905 111 LLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDH 182 (305)
Q Consensus 111 Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~~ 182 (305)
++..||.|.+..|+..|+..|...++..|+..++.+|..|++..|+..|++||..|+..++......++.-.
T Consensus 791 il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~ 862 (1267)
T KOG0783|consen 791 ILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGF 862 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcch
Confidence 999999999999999999999999999999999999999999999999999999999988765544444333
No 13
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.65 E-value=5.5e-16 Score=140.82 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=132.1
Q ss_pred CCCEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecC----CCCHHHHHHHHhhhcCCCCCCcchHHHH
Q 021905 33 EPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPIL----GVPCGAVSSFVGFLYTSRCTEEEMEKYG 108 (305)
Q Consensus 33 ~~DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~----~v~~~~~~~~L~flYt~~~~~~~~~~~~ 108 (305)
++||.+.+ =|.+.+.||.-| ..|+||++||+|.++| +++..|.++ .++.+++..++.-+|.+.+.++. +.+
T Consensus 69 nSDv~l~a-lg~eWrlHk~yL-~QS~yf~smf~Gtw~e-s~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l--~dv 143 (488)
T KOG4682|consen 69 NSDVILEA-LGFEWRLHKPYL-FQSEYFKSMFSGTWKE-SSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL--SDV 143 (488)
T ss_pred Ccceehhh-ccceeeeeeeee-eccHHHHHHhccccCh-hhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH--HHH
Confidence 46999998 899999999999 7899999999999988 577766653 78999999999999999999996 889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhccc
Q 021905 109 IHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQD 181 (305)
Q Consensus 109 ~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~ 181 (305)
..++++|..+++++|.+.|.+.+...++++|++..|..+.+|+...+.+.|++++..|+-.+....-+.+++.
T Consensus 144 ~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 144 VGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 9999999999999999999999999999999999999999999999999999999999999987776656653
No 14
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=99.43 E-value=7.8e-14 Score=101.15 Aligned_cols=72 Identities=36% Similarity=0.806 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhhhCCcccCCccCCCCCCCCCCCCCcchHHHHHHHHhhhhcCccc--CCCChhHHHHHHHHHHHHhcC
Q 021905 216 QLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRV--NGGCLRCKRMWQLLRLHSSMC 293 (305)
Q Consensus 216 ~L~e~~~~l~h~~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~h~~~c~~~~--~~~c~~c~~~~~l~~~h~~~c 293 (305)
++.+.|+.|.|+.+ |+..+ .++|. ++.|.+||.|+.|+.+|+.+. .++|..||++|+ |++.|
T Consensus 2 ~~~~~L~~L~Ha~~--C~~~~---------~~~C~-~~~C~~~K~ll~H~~~C~~~~C~~~~C~~~k~ll~----H~~~C 65 (75)
T PF02135_consen 2 QLQRWLELLLHASS--CRDPE---------HPNCS-LPHCRKMKKLLKHMRTCRNRDCPVPGCQSCKRLLS----HARSC 65 (75)
T ss_dssp HHHHHHHHHHHHHH--HHHHH---------CTT-S-STTHHHHHHHHHHHCCSSSCCSSCCTHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHhH--CcCCC---------CCCCC-CcccHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----HHhcC
Confidence 56788999999988 98431 27899 899999999999999999887 789999999999 99999
Q ss_pred CCCCCCcCCCC
Q 021905 294 EQSDSCRVPLC 304 (305)
Q Consensus 294 ~~~~~c~~p~c 304 (305)
++++ |+||+|
T Consensus 66 ~~~~-C~vc~C 75 (75)
T PF02135_consen 66 KDSD-CPVCFC 75 (75)
T ss_dssp TSTT-SSSHHH
T ss_pred CCCC-CCCCCC
Confidence 9988 999986
No 15
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.90 E-value=9e-09 Score=93.62 Aligned_cols=134 Identities=12% Similarity=0.032 Sum_probs=111.9
Q ss_pred cEEehhHHHHHhccHHHHHHhcCCCCCCCCC---CeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHhcCC
Q 021905 44 LRIPVHASILVSASPVLENIIDRPRKHRSSE---KVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSV 120 (305)
Q Consensus 44 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~---~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~lA~~~~v 120 (305)
..++||..++ .|.+||+.||.|++.|.+.. ....++.....+++..++|+|++.-++.. +.+.+++.+|+++.+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~--~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF--DVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH--HHHhhHHHHhhHhhh
Confidence 3599999999 67889999999999884322 33456677889999999999999888774 788999999999876
Q ss_pred h---HHHHHHHHHHhhc---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhcc
Q 021905 121 P---QLKQRCTKGLGER---LTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQ 180 (305)
Q Consensus 121 ~---~Lk~~c~~~L~~~---l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~ 180 (305)
. .|+.++...|.+. ++..|+.+++.++.....++|...+..|+..|+..+...+++.+..
T Consensus 378 ~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~ 443 (516)
T KOG0511|consen 378 ADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSL 443 (516)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 5 2677766666664 6677899999999999999999999999999999999999888643
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.64 E-value=2.4e-08 Score=98.48 Aligned_cols=110 Identities=17% Similarity=0.259 Sum_probs=77.5
Q ss_pred CCccchHhhHhhccCCC-------CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCC-----------CCCCCeEec
Q 021905 18 SPVTTLTKENAPAFYEP-------DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKH-----------RSSEKVIPI 79 (305)
Q Consensus 18 ~p~s~l~~dl~~ll~~~-------DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e-----------~~~~~~I~l 79 (305)
+|.+.+...|..|+..+ ||+|.| |++.|+|||.||++||++|+.+|...... .+....|.+
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~v-g~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v 614 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYV-GTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV 614 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEe-cCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee
Confidence 34445666777777643 999999 99999999999999999999999654221 122344667
Q ss_pred CCCCHHHHHHHHhhhcCCCC--C--Ccc--------hHHHHHH-------HHHHHHhcCChHHHHHHH
Q 021905 80 LGVPCGAVSSFVGFLYTSRC--T--EEE--------MEKYGIH-------LLALSHVYSVPQLKQRCT 128 (305)
Q Consensus 80 ~~v~~~~~~~~L~flYt~~~--~--~~~--------~~~~~~~-------Ll~lA~~~~v~~Lk~~c~ 128 (305)
+++++..|+.+|+||||+.. + .++ ..+|..+ +..++.+|++..|.....
T Consensus 615 e~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 615 EDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred ccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 89999999999999999843 2 111 1233333 666677777666655443
No 17
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.56 E-value=1e-07 Score=83.46 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=79.6
Q ss_pred chHhhHhhccC----CCCEEEEecCCc--------------EEehhHHHHHhccHHHHHHhcCCCCCC--------CCCC
Q 021905 22 TLTKENAPAFY----EPDVQILTSGGL--------------RIPVHASILVSASPVLENIIDRPRKHR--------SSEK 75 (305)
Q Consensus 22 ~l~~dl~~ll~----~~DV~l~v~~g~--------------~~~aHk~vLaa~S~yF~~mf~~~~~e~--------~~~~ 75 (305)
.+-.|+..+|+ -.|+.+.++||+ +|+||++|.++||++|++++.....++ ....
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 45556666665 247777776654 589999999999999999986542221 1234
Q ss_pred eEecCC-CCHHHHH-HHHhhhcCCCCCCcch--------------------------HHHHHHHHHHHHhcCChHHHHHH
Q 021905 76 VIPILG-VPCGAVS-SFVGFLYTSRCTEEEM--------------------------EKYGIHLLALSHVYSVPQLKQRC 127 (305)
Q Consensus 76 ~I~l~~-v~~~~~~-~~L~flYt~~~~~~~~--------------------------~~~~~~Ll~lA~~~~v~~Lk~~c 127 (305)
.|.+.+ +-|.+|. .||.++||+.++.+.. ...+++|+..|-+|.+..|...|
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~ 380 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQAC 380 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566653 4455554 6889999998763210 13456667777777777777777
Q ss_pred HHHHhhcCChhhHHHH
Q 021905 128 TKGLGERLTIDNVVDV 143 (305)
Q Consensus 128 ~~~L~~~l~~~n~~~i 143 (305)
+..+......+++..+
T Consensus 381 e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 381 EDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHhhhhhhccccc
Confidence 7776666555554433
No 18
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.29 E-value=5.2e-06 Score=72.16 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=83.9
Q ss_pred EEEEecCCcEEehhHHHHHhccHHHHHHhcCCCC-CCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHHH
Q 021905 36 VQILTSGGLRIPVHASILVSASPVLENIIDRPRK-HRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL 114 (305)
Q Consensus 36 V~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~-e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~l 114 (305)
|.+.| ||..|...+.-|.....+|+.|+..+.. +.+.++.|-| |=+|.-|..+|+|+-.|...+.+....+.+|+.=
T Consensus 7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEec-CCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 56788 9999999999999999999999999853 3234455666 7799999999999999888877667899999999
Q ss_pred HHhcCChHHHHHHHHHHhhc
Q 021905 115 SHVYSVPQLKQRCTKGLGER 134 (305)
Q Consensus 115 A~~~~v~~Lk~~c~~~L~~~ 134 (305)
|.+|.+++|.+.|...+...
T Consensus 85 A~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 85 AEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHhhHHHHHHHHHHHhhhc
Confidence 99999999999999987765
No 19
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.13 E-value=3.6e-06 Score=76.82 Aligned_cols=145 Identities=21% Similarity=0.112 Sum_probs=115.0
Q ss_pred CCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHH---HHHHHHHhc
Q 021905 42 GGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGI---HLLALSHVY 118 (305)
Q Consensus 42 ~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~---~Ll~lA~~~ 118 (305)
+|..+.+|+.+++++|++|+.|+.....+ .....+.+.+.+++.++.+..|.|+..-.... +... .++..+..+
T Consensus 108 ~~g~~~~~~~~~~a~~~V~~~~~~~d~~~-~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~--~~~~~~~~~~a~~f~~ 184 (297)
T KOG1987|consen 108 SNGFLVAHKLVLVARSEVFEAMGKSDVFK-ESSKLITLLEEKPEVLEALNGFQVLPSQVSSV--ERIFEKHPDLAAAFKY 184 (297)
T ss_pred cCcEEEcCceEEEeeecceeeecccccch-hccccccccccchhhHhhhceEEEeccchHHH--HHhhcCChhhhhcccc
Confidence 35569999999999999999999988544 24455688899999999999999996543332 3343 788899999
Q ss_pred CChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHHHHHHH--hHHHHhCchhhhhccccChHHHHHH
Q 021905 119 SVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAAS--RFKAVEKTEGWKFLQDHDPWLELQI 190 (305)
Q Consensus 119 ~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~--nf~~v~~~~~f~~L~~~~p~l~~el 190 (305)
+.+.|+..|...+...+...++...++.+..++...+...+..++.. ++..+....++...... +++..++
T Consensus 185 ~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~-~~~~~~~ 257 (297)
T KOG1987|consen 185 KNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK-KDLWYEI 257 (297)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh-HHHHHHH
Confidence 99999999999999999999999999999999999999999999997 66667655555444433 3333333
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.11 E-value=4.6e-06 Score=73.25 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCccchHhhHhhccC---CCCEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCC-CCCCeEecCCCCHHHHHHHHhh
Q 021905 18 SPVTTLTKENAPAFY---EPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHR-SSEKVIPILGVPCGAVSSFVGF 93 (305)
Q Consensus 18 ~p~s~l~~dl~~ll~---~~DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~-~~~~~I~l~~v~~~~~~~~L~f 93 (305)
.|..++.+|+.+.++ .+|+-|+. .-.-|+|||++|++|+|+|+.+.+.+...+ ...-.|...+++-++|+.||+|
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiF-keTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~ 190 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIF-KETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS 190 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeee-eeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence 344578889988866 36888877 667899999999999999999888763221 1122355568999999999999
Q ss_pred hcCCCCCCcch-HHHHHHHHHHHHhcCChH
Q 021905 94 LYTSRCTEEEM-EKYGIHLLALSHVYSVPQ 122 (305)
Q Consensus 94 lYt~~~~~~~~-~~~~~~Ll~lA~~~~v~~ 122 (305)
+|||....++. .+++.-|-.++.-|+.+.
T Consensus 191 l~tgEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 191 LITGEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred HHhcccchhhcCCchHHHHHHHHHhhCCch
Confidence 99998765542 245555666777777654
No 21
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.87 E-value=8.6e-05 Score=57.08 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=50.1
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcC
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYT 96 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt 96 (305)
.|+++..||.+|.+.+.+. ..|..++.|+.+...+......|++++++..+++.+++|++.
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH 63 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 4788888999999999987 799999999986532222235799999999999999999964
No 22
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.79 E-value=0.00014 Score=53.96 Aligned_cols=83 Identities=12% Similarity=0.237 Sum_probs=64.5
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCC--CCCCCCCeEecCCCCHHHHHHHHhhh-----cCCC-CC---Ccc
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPR--KHRSSEKVIPILGVPCGAVSSFVGFL-----YTSR-CT---EEE 103 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~--~e~~~~~~I~l~~v~~~~~~~~L~fl-----Yt~~-~~---~~~ 103 (305)
=|+++.+||.+|-.-|.+ |.-|+-.|+||+++. .+ +..++|.+.+++..+++.+.+|+ |++. .. .+.
T Consensus 18 yVkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se-~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 18 YVKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSE-AEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred heEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccc-cccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 477777788888877765 577999999999873 33 46678999999999999999997 5554 11 122
Q ss_pred hHHHHHHHHHHHHhcC
Q 021905 104 MEKYGIHLLALSHVYS 119 (305)
Q Consensus 104 ~~~~~~~Ll~lA~~~~ 119 (305)
..+.+++||.+|+++.
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 2489999999999875
No 23
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.56 E-value=0.00016 Score=65.61 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=73.3
Q ss_pred cEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecC-CCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHhcCChH
Q 021905 44 LRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPIL-GVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQ 122 (305)
Q Consensus 44 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~-~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~lA~~~~v~~ 122 (305)
+.|.+.+.+|...=.||+..+.....+......|+|. .-+-.+|+-+++|+....-.++. +|+..++.-|++++|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~--~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP--SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc--CcEEEeEehhhhhccHH
Confidence 6799999999999999999996532222334446665 56788999999999997777775 89999999999999999
Q ss_pred HHHHHHHHHhhc
Q 021905 123 LKQRCTKGLGER 134 (305)
Q Consensus 123 Lk~~c~~~L~~~ 134 (305)
|.+.|..|+..+
T Consensus 92 Lve~cl~y~~~~ 103 (317)
T PF11822_consen 92 LVEECLQYCHDH 103 (317)
T ss_pred HHHHHHHHHHHh
Confidence 999999998665
No 24
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.49 E-value=0.00024 Score=53.89 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhccccChHHHHHHHH
Q 021905 140 VVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQ 192 (305)
Q Consensus 140 ~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~~~p~l~~ell~ 192 (305)
|++++.+|..|+.+.|.+.|.+||..||.++..+++|.+|+.+ .+..++.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~---~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFD---QLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HH---HHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHH---HHHHHHh
Confidence 6789999999999999999999999999999999999999855 4555544
No 25
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.49 E-value=0.00041 Score=48.04 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=47.7
Q ss_pred EEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcC
Q 021905 36 VQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYT 96 (305)
Q Consensus 36 V~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt 96 (305)
|+|+.+||+.|.+.+.+. ..|+.++.|+.+...+. . .|++++++..+++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~-~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDED-E--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCG-T--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccc-c--ccccCccCHHHHHHHHHHHHh
Confidence 678888999999999987 79999999998753332 2 799999999999999999863
No 26
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.46 E-value=6e-05 Score=56.72 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=64.3
Q ss_pred EEEEecCCcEEehhHHHHH-hccHHHHHHhcCC-C-CCCCCCCeEecCCCCHHHHHHHHhhhcC-CCCCCcchHHHHHHH
Q 021905 36 VQILTSGGLRIPVHASILV-SASPVLENIIDRP-R-KHRSSEKVIPILGVPCGAVSSFVGFLYT-SRCTEEEMEKYGIHL 111 (305)
Q Consensus 36 V~l~v~~g~~~~aHk~vLa-a~S~yF~~mf~~~-~-~e~~~~~~I~l~~v~~~~~~~~L~flYt-~~~~~~~~~~~~~~L 111 (305)
|+|.| +|+.|.+-+..|. ....+|..|+.+. . ........+-| |=+++.|+.+|+|+.+ +.++... ......+
T Consensus 1 V~lNV-GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~-~~~~~~l 77 (94)
T PF02214_consen 1 VRLNV-GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPD-EICLEEL 77 (94)
T ss_dssp EEEEE-TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---T-TS-HHHH
T ss_pred CEEEE-CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCC-chhHHHH
Confidence 68899 9999999999998 4456999999864 1 11124455666 7799999999999999 6666542 3568889
Q ss_pred HHHHHhcCChHH-HHHH
Q 021905 112 LALSHVYSVPQL-KQRC 127 (305)
Q Consensus 112 l~lA~~~~v~~L-k~~c 127 (305)
+.-|++|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999988 5543
No 27
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0039 Score=51.66 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=71.9
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCC--------------
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCT-------------- 100 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~-------------- 100 (305)
-+.|..+||+.|.+-..+. ..|..+.+++...--. .....|+|++|...+|..+|+|++.-.-+
T Consensus 6 ~ikL~SsDG~~f~ve~~~a-~~s~~i~~~~~~~~~~-~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~ 83 (162)
T KOG1724|consen 6 KIKLESSDGEIFEVEEEVA-RQSQTISAHMIEDGCA-DENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEET 83 (162)
T ss_pred eEEEEccCCceeehhHHHH-HHhHHHHHHHHHcCCC-ccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccC
Confidence 3566777999999999886 7889988888654111 11146999999999999999999873311
Q ss_pred -Ccc--------hHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 021905 101 -EEE--------MEKYGIHLLALSHVYSVPQLKQRCTKGLGERL 135 (305)
Q Consensus 101 -~~~--------~~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l 135 (305)
+.. ....+.+|+.+|+++++++|.+.|.+.+...+
T Consensus 84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred CccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 000 01467888888888888888888877766654
No 28
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.86 E-value=0.0016 Score=48.78 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhccccChHHHHHHHH
Q 021905 140 VVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQ 192 (305)
Q Consensus 140 ~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~~~p~l~~ell~ 192 (305)
|++++.+|..|+.+.|.+.|.+||..||..+.++++|..|+.+ .+.+++.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~---~l~~iL~ 50 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLE---QLLSLLS 50 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHH---HHHHHhC
Confidence 4678899999999999999999999999999999999998744 4444443
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.77 E-value=0.0029 Score=58.38 Aligned_cols=87 Identities=21% Similarity=0.130 Sum_probs=63.6
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL 114 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~l 114 (305)
|+++...+|+.|.|||..|+++|.+|..-+..-+ .+...|.-..+-+++|..|++|+|-..-.+.. +.--.|+.+
T Consensus 151 di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~---~~~heI~~~~v~~~~f~~flk~lyl~~na~~~--~qynallsi 225 (516)
T KOG0511|consen 151 DIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY---VQGHEIEAHRVILSAFSPFLKQLYLNTNAEWK--DQYNALLSI 225 (516)
T ss_pred chHHHhhccccccHHHHHHHhhhcccCchhhhhc---cccCchhhhhhhHhhhhHHHHHHHHhhhhhhh--hHHHHHHhh
Confidence 9999998999999999999999988755443221 13344655678899999999999976322221 334778888
Q ss_pred HHhcCChHHHHH
Q 021905 115 SHVYSVPQLKQR 126 (305)
Q Consensus 115 A~~~~v~~Lk~~ 126 (305)
..+|+++.|...
T Consensus 226 ~~kF~~e~l~~~ 237 (516)
T KOG0511|consen 226 EVKFSKEKLSLE 237 (516)
T ss_pred hhhccHHHhHHH
Confidence 888887776543
No 30
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.14 E-value=0.02 Score=53.87 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=65.8
Q ss_pred EEEEecCCcEEehhHHHHHhcc--HHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHH-H
Q 021905 36 VQILTSGGLRIPVHASILVSAS--PVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHL-L 112 (305)
Q Consensus 36 V~l~v~~g~~~~aHk~vLaa~S--~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~L-l 112 (305)
|.|.| +|+.|.-.+.-|+..- .+|.+++.+.+..........+-|=+|+.|..+|+|+-|+.++... .....+ +
T Consensus 13 V~lNV-GGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g--~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNV-GGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG--VFPERLLH 89 (465)
T ss_pred EEEec-CceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc--Cchhhhhh
Confidence 67788 9999999999886544 5999999877543222222344488999999999999999999864 334444 4
Q ss_pred HHHHhcCChHHHH
Q 021905 113 ALSHVYSVPQLKQ 125 (305)
Q Consensus 113 ~lA~~~~v~~Lk~ 125 (305)
.=|.+|++..|.+
T Consensus 90 dEA~fYGl~~llr 102 (465)
T KOG2714|consen 90 DEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhcCcHHHHH
Confidence 4899999998877
No 31
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.71 E-value=0.023 Score=49.00 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=69.7
Q ss_pred CEEEEecCCcEEehhHHHHHhccH--HHHHHhcCC--CCCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSASP--VLENIIDRP--RKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIH 110 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~--yF~~mf~~~--~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~ 110 (305)
=|.+.+ +|+.|-.-..-|..+-| .+.+||.+. +-+.+.+.-+-| |-++.-|+-+|.|+-.|.++... .-++..
T Consensus 10 ~vrlni-gGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s-~i~~lg 86 (302)
T KOG1665|consen 10 MVRLNI-GGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLS-DIDCLG 86 (302)
T ss_pred hheeec-CCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecC-CccHHH
Confidence 367777 88888766666655543 778899775 222234444444 88999999999999999988654 357899
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 021905 111 LLALSHVYSVPQLKQRCTK 129 (305)
Q Consensus 111 Ll~lA~~~~v~~Lk~~c~~ 129 (305)
+++.|++|++-+|++-.++
T Consensus 87 vLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHhhHHhhHhHHhHHhh
Confidence 9999999999999988877
No 32
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.15 Score=40.10 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=68.6
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCCCCCCeEecCCCCHHHHHHHHhhhcCCC--CCCcc---------
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSR--CTEEE--------- 103 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~~I~l~~v~~~~~~~~L~flYt~~--~~~~~--------- 103 (305)
-|.+..++|..|.+.+.+ |-+|-..+.|+...- ...-.|+.+++...+|..+++|+-..+ ...+.
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~---~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDST---ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhcccc---ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 367777799999998866 589999999887642 123347788999999999999985432 21110
Q ss_pred ---h---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 021905 104 ---M---------EKYGIHLLALSHVYSVPQLKQRCTKGLGERLT 136 (305)
Q Consensus 104 ---~---------~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~ 136 (305)
. .+.+.++..+|+++.++.|.+.|...+...+.
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 0 14566777778888888888777766655443
No 33
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=92.25 E-value=0.32 Score=35.29 Aligned_cols=46 Identities=35% Similarity=0.686 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhcCcccCCCC--hhHHHHHHHHHHHHhcCCCCCCCcCCCCC
Q 021905 257 GLQLLIRHFATCKKRVNGGC--LRCKRMWQLLRLHSSMCEQSDSCRVPLCR 305 (305)
Q Consensus 257 ~~~~~~~h~~~c~~~~~~~c--~~c~~~~~l~~~h~~~c~~~~~c~~p~c~ 305 (305)
..-.++.|+.+|+.+- |.| +.|+.|-+|++ |-..|+..+ |..+.|.
T Consensus 9 ~~l~~L~Ha~~C~~~~-~~C~~~~C~~~k~L~~-H~~~C~~~~-C~~~~C~ 56 (79)
T smart00551 9 RWLELLVHARRCKARE-AKCQYPNCKTMKKLLR-HMDSCKVRK-CKYGYCA 56 (79)
T ss_pred HHHHHHHHHHhCCCCC-CCCCCchhHHHHHHHH-HHHHcCCCC-CCCCCCH
Confidence 3446789999997753 678 78999877765 799999985 9988873
No 34
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.74 E-value=0.65 Score=38.41 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=70.5
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHH-HHhcCCCCCC--CCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLE-NIIDRPRKHR--SSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHL 111 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~-~mf~~~~~e~--~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~L 111 (305)
=|.+.| +|..|.--|.-|..-+.-|- .+.+....-. ....--.+-|=+|.-|..+|+|+-.|++.++. -.-..+
T Consensus 22 wVRlNV-GGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~eeGv 98 (210)
T KOG2715|consen 22 WVRLNV-GGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSEEGV 98 (210)
T ss_pred EEEEec-CCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhhhcc
Confidence 377888 89899999999987775554 4444331110 11112344477899999999999999998775 334567
Q ss_pred HHHHHhcCChHHHHHHHHHHhhc
Q 021905 112 LALSHVYSVPQLKQRCTKGLGER 134 (305)
Q Consensus 112 l~lA~~~~v~~Lk~~c~~~L~~~ 134 (305)
|.-|++|.++.|..+..+.|...
T Consensus 99 L~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 99 LEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred chhhhccCChHHHHHHHHHHHHH
Confidence 88899999999999988888775
No 35
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=91.29 E-value=0.41 Score=34.20 Aligned_cols=45 Identities=29% Similarity=0.655 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhCCcccCCccCCCCCCCCCCCCCcchHHHHHHHHhhhhcCcccCCCChhHH
Q 021905 218 SEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCK 280 (305)
Q Consensus 218 ~e~~~~l~h~~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~h~~~c~~~~~~~c~~c~ 280 (305)
.+.-..|.|+-+ |+ ...|. ++.|...|.|+.|...|+. +.|++|.
T Consensus 30 ~~~K~ll~H~~~--C~------------~~~C~-~~~C~~~k~ll~H~~~C~~---~~C~vc~ 74 (75)
T PF02135_consen 30 RKMKKLLKHMRT--CR------------NRDCP-VPGCQSCKRLLSHARSCKD---SDCPVCF 74 (75)
T ss_dssp HHHHHHHHHHCC--SS------------SCCSS-CCTHHHHHHHHHHHHHHTS---TTSSSHH
T ss_pred HHHHHHHHHHHH--cC------------CCCCC-CCCCHHHHHHHHHHhcCCC---CCCCCCC
Confidence 344578899955 87 33488 8999999999999999974 3598874
No 36
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=88.82 E-value=0.4 Score=43.86 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=48.7
Q ss_pred cCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhccccChHHHHHHHHHHHHhhh
Q 021905 134 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAES 199 (305)
Q Consensus 134 ~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~~~p~l~~ell~~~~~~~~ 199 (305)
.++++||+.++.-+.....+.|.+.|+.|+..|+.+|+.++- .|.--+..++..|-..+...+.
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~--nl~Cl~~~Ll~RLa~~~t~~el 134 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPC--NLNCLNDNLLTRLADMFTHEEL 134 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCC--CcccCCHHHHHHHHHhcCcccH
Confidence 489999999999999999999999999999999999998663 2333333466666554444333
No 37
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.74 E-value=1.1 Score=32.24 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhh
Q 021905 106 KYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDN 139 (305)
Q Consensus 106 ~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n 139 (305)
+.+.+|+.+|++++|+.|.+.|...+...+...+
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks 47 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKS 47 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCC
Confidence 6899999999999999999999998877654333
No 38
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=81.47 E-value=3.9 Score=35.69 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=57.8
Q ss_pred EEEEecCCcEEehhHHHH-HhccHHHHHHhcCCC-CCCCCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHH
Q 021905 36 VQILTSGGLRIPVHASIL-VSASPVLENIIDRPR-KHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLA 113 (305)
Q Consensus 36 V~l~v~~g~~~~aHk~vL-aa~S~yF~~mf~~~~-~e~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~ 113 (305)
|.+.+ ||..|..-..-| .-.-..+.+||++.. ...+.....-| |=+...|+.+|+|+-|....+.+.......|+.
T Consensus 11 v~lnv-GG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~r 88 (221)
T KOG2723|consen 11 VELNV-GGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVR 88 (221)
T ss_pred eeecc-CCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHHHHH
Confidence 44445 674444322213 223445667777532 11122333444 567788999999999966665544567889999
Q ss_pred HHHhcCChHHHHHHHH
Q 021905 114 LSHVYSVPQLKQRCTK 129 (305)
Q Consensus 114 lA~~~~v~~Lk~~c~~ 129 (305)
-|++|+++.+.....+
T Consensus 89 EA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 89 EAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHccccHHHHHhc
Confidence 9999999987765444
No 39
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=80.21 E-value=3.9 Score=39.47 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=44.7
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHHHHhCchhhhhccc-----cChHHHHHHHHHHH
Q 021905 135 LTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQD-----HDPWLELQILQFMD 195 (305)
Q Consensus 135 l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~~v~~~~~f~~L~~-----~~p~l~~ell~~~~ 195 (305)
+..+|++.++..|.+|..+.|...|++||..+. +...+|..|.+ +.|+++.-+++.+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l---~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNL---MADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 778999999999999999999999999999864 33455665555 45666666655543
No 40
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=76.58 E-value=2.4 Score=38.50 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=58.1
Q ss_pred CEEEEecCCcEEehhHHHHHhcc-HHHHHHhcCCC--CCCCCCCeEec-CCCCHHHHHHHHhhhcCCCCCCcchHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSAS-PVLENIIDRPR--KHRSSEKVIPI-LGVPCGAVSSFVGFLYTSRCTEEEMEKYGIH 110 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S-~yF~~mf~~~~--~e~~~~~~I~l-~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~ 110 (305)
-++..+ ++..|.+-+.+|.+.- ...-.||.+++ ...+...+.++ ++++..+|+++|+|.-+|.+...+ .-.+.+
T Consensus 97 ~~t~lv-d~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~-~vSvpE 174 (438)
T KOG3840|consen 97 KVCLLV-DQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS-SVSVSE 174 (438)
T ss_pred ceEEEe-eeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC-CCchHH
Confidence 566777 8888999998885432 34566776652 22223344555 489999999999999999876544 245677
Q ss_pred HHHHHHhcCCh
Q 021905 111 LLALSHVYSVP 121 (305)
Q Consensus 111 Ll~lA~~~~v~ 121 (305)
|-++.|++.|+
T Consensus 175 LrEACDYLlip 185 (438)
T KOG3840|consen 175 LREACDYLLVP 185 (438)
T ss_pred HHhhcceEEee
Confidence 77777776554
No 41
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=67.97 E-value=8.6 Score=28.70 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 021905 137 IDNVVDVLQLARLCDAPDLYLRCMKLAASR 166 (305)
Q Consensus 137 ~~n~~~il~~A~~~~~~~L~~~c~~~i~~n 166 (305)
.+++.+++.+|..++.+.|...|..++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 889999999999999999999999999876
No 42
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=56.85 E-value=40 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc
Q 021905 109 IHLLALSHVYSVPQLKQRCTKGLGER 134 (305)
Q Consensus 109 ~~Ll~lA~~~~v~~Lk~~c~~~L~~~ 134 (305)
.+++.+|..|+.+.|...|.+++..+
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~n 27 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKN 27 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHH
Confidence 56889999999999999999999876
No 43
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=48.55 E-value=12 Score=27.23 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.9
Q ss_pred CCChhHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLH 289 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h 289 (305)
-+||.|++++++|.-+
T Consensus 8 ~~Cp~C~~ak~~L~~~ 23 (86)
T TIGR02183 8 PGCPYCVRAKQLAEKL 23 (86)
T ss_pred CCCccHHHHHHHHHHh
Confidence 4899999999998765
No 44
>PHA03098 kelch-like protein; Provisional
Probab=46.76 E-value=36 Score=33.54 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHhH
Q 021905 135 LTIDNVVDVLQLARLCDAPDLYLRCMKLAASRF 167 (305)
Q Consensus 135 l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf 167 (305)
++.+|+.+++..|..++.+.|...|.+|+.+++
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l 105 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKII 105 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 788999999999999999999999999999743
No 45
>PHA02713 hypothetical protein; Provisional
Probab=43.10 E-value=45 Score=33.36 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.2
Q ss_pred cCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhH
Q 021905 134 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRF 167 (305)
Q Consensus 134 ~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf 167 (305)
.++.+|+.+++..|..+..+.|.+.|.+|+.+++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 3899999999999999999999999999999653
No 46
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=37.53 E-value=25 Score=25.22 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=13.1
Q ss_pred CCChhHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRL 288 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~ 288 (305)
.+|+.|++.+++|.-
T Consensus 9 ~~C~~C~~a~~~L~~ 23 (85)
T PRK11200 9 PGCPYCVRAKELAEK 23 (85)
T ss_pred CCChhHHHHHHHHHh
Confidence 489999999999874
No 47
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=36.96 E-value=14 Score=27.29 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=15.3
Q ss_pred hhhcCcccCCCChhHHHHH
Q 021905 265 FATCKKRVNGGCLRCKRMW 283 (305)
Q Consensus 265 ~~~c~~~~~~~c~~c~~~~ 283 (305)
|..=+++.|..||.||-.|
T Consensus 68 f~~~~ik~pSRCP~CKSE~ 86 (97)
T COG3357 68 FRDDKIKKPSRCPKCKSEW 86 (97)
T ss_pred ccccccCCcccCCcchhhc
Confidence 4445678899999999988
No 48
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=36.94 E-value=2e+02 Score=22.45 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=55.0
Q ss_pred ecCCCCHHHHHHHHhhhcCCCCCCc---chHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhC-CCh
Q 021905 78 PILGVPCGAVSSFVGFLYTSRCTEE---EMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLC-DAP 153 (305)
Q Consensus 78 ~l~~v~~~~~~~~L~flYt~~~~~~---~~~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~-~~~ 153 (305)
.+.+++|+..+.+.+|.|.+.+..+ .....+..|-.++-.-..+.|+......|...++++...+++..+..| +.|
T Consensus 27 ~~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~G~P 106 (123)
T TIGR02425 27 ATTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYAGVP 106 (123)
T ss_pred cccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 4567889988899999988665533 223445555555555556778888888888889999988876655554 655
Q ss_pred HHHHH
Q 021905 154 DLYLR 158 (305)
Q Consensus 154 ~L~~~ 158 (305)
.....
T Consensus 107 ~a~~a 111 (123)
T TIGR02425 107 AANHA 111 (123)
T ss_pred HHHHH
Confidence 54443
No 49
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=36.77 E-value=28 Score=22.93 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=13.1
Q ss_pred CCChhHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLH 289 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h 289 (305)
-||+.|++...+|+-+
T Consensus 7 ~~C~~C~~~~~~L~~~ 22 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEK 22 (60)
T ss_dssp TTSHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHc
Confidence 4899999999998543
No 50
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=35.52 E-value=29 Score=23.87 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.6
Q ss_pred CCChhHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLH 289 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h 289 (305)
-+|+.|++..++|.-|
T Consensus 9 ~~Cp~C~~ak~~L~~~ 24 (72)
T cd03029 9 PGCPFCARAKAALQEN 24 (72)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 5899999999998744
No 51
>PHA02790 Kelch-like protein; Provisional
Probab=34.72 E-value=49 Score=32.35 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 021905 135 LTIDNVVDVLQLARLCDAPDLYLRCMKLAASR 166 (305)
Q Consensus 135 l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~n 166 (305)
++.+|+.+++..|.....+.+.+.|.+|+.++
T Consensus 88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEFIIYTCINFILRD 119 (480)
T ss_pred EecccHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999964
No 52
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=33.05 E-value=33 Score=23.95 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.8
Q ss_pred CCChhHHHHHHHHHHHHh
Q 021905 274 GGCLRCKRMWQLLRLHSS 291 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h~~ 291 (305)
-+||.|+++.++|.-+.-
T Consensus 8 ~~Cp~C~~~~~~l~~~~~ 25 (82)
T cd03419 8 SYCPYCKRAKSLLKELGV 25 (82)
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 489999999999876543
No 53
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=32.97 E-value=32 Score=23.75 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.1
Q ss_pred CCChhHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLH 289 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h 289 (305)
.+|+.|++..++|.-|
T Consensus 9 ~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 9 LGCEDCTAVRLFLREK 24 (73)
T ss_pred CCChhHHHHHHHHHHC
Confidence 4899999999988754
No 54
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=30.82 E-value=37 Score=23.94 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.8
Q ss_pred CCChhHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRL 288 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~ 288 (305)
-+|+.|++..++|.-
T Consensus 16 ~~Cp~C~~ak~~L~~ 30 (79)
T TIGR02190 16 PGCPFCAKAKATLKE 30 (79)
T ss_pred CCCHhHHHHHHHHHH
Confidence 489999999999863
No 55
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=29.44 E-value=40 Score=25.20 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.4
Q ss_pred CCChhHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLH 289 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h 289 (305)
-+||.|+++.++|.=+
T Consensus 16 ~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 16 SSCCMCHVVKRLLLTL 31 (99)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 5899999999998643
No 56
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=29.19 E-value=47 Score=21.91 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=13.9
Q ss_pred CCCChhHHHHHHHHHHH
Q 021905 273 NGGCLRCKRMWQLLRLH 289 (305)
Q Consensus 273 ~~~c~~c~~~~~l~~~h 289 (305)
..+|+.|+++.++|.-+
T Consensus 7 ~~~Cp~C~~~~~~L~~~ 23 (72)
T cd02066 7 KSTCPYCKRAKRLLESL 23 (72)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45899999999988754
No 57
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=27.71 E-value=3.3e+02 Score=27.13 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=43.8
Q ss_pred hccccChHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhhCCcccCCccCCCCCCCCCCCCCcchHH
Q 021905 178 FLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQG 257 (305)
Q Consensus 178 ~L~~~~p~l~~ell~~~~~~~~~~~~~~r~~~~~~~~~~L~e~~~~l~h~~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~ 257 (305)
.|.....+.+.|..+.+....++...-.||.. ==|..+.|| +.|.|= + .+-|+ ++--++
T Consensus 497 tlE~k~~~n~~e~~kkl~~~~qr~l~etKkKQ--WC~nC~~EA---iy~CCW-------------N--TSYCs-veCQQ~ 555 (588)
T KOG3612|consen 497 TLEQKHAENIKEEIKKLAEEHQRALAETKKKQ--WCYNCLDEA---IYHCCW-------------N--TSYCS-VECQQG 555 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHH---HHHhhc-------------c--ccccC-cchhhc
Confidence 34444555677777777766655554443322 246777854 467752 2 45687 554444
Q ss_pred HHHHHHhhhhcCcccCC
Q 021905 258 LQLLIRHFATCKKRVNG 274 (305)
Q Consensus 258 ~~~~~~h~~~c~~~~~~ 274 (305)
=.. +|.+.|+.+.+.
T Consensus 556 HW~--~H~ksCrrk~~~ 570 (588)
T KOG3612|consen 556 HWP--EHRKSCRRKKTN 570 (588)
T ss_pred cch--hHhhhhcccCCC
Confidence 444 999999866543
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=27.16 E-value=4.7e+02 Score=25.06 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHhhhCCcccCCccCCCCCCCCCCCCCcchHHHHHHHHhhhhcCcccCCCChhHHHHHH
Q 021905 214 YLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQ 284 (305)
Q Consensus 214 ~~~L~e~~~~l~h~~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~h~~~c~~~~~~~c~~c~~~~~ 284 (305)
..++.+.|++.-..|- ..+|-.+.... .-||+-.-+=+-++.++ ..+.+..||.|++++.
T Consensus 357 a~~~~~e~~L~Cg~CG---e~~Glk~e~Lq--ALpCsHIfH~rCl~e~L------~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 357 AHECVEETELYCGLCG---ESIGLKNERLQ--ALPCSHIFHLRCLQEIL------ENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHHHHHHHhhhhhhhh---hhhcCCccccc--ccchhHHHHHHHHHHHH------HhCCCCCCccHHHHHh
Confidence 5677788888777762 46776665555 55677211222222222 3677889999995543
No 59
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=26.01 E-value=83 Score=22.55 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc
Q 021905 109 IHLLALSHVYSVPQLKQRCTKGLGER 134 (305)
Q Consensus 109 ~~Ll~lA~~~~v~~Lk~~c~~~L~~~ 134 (305)
.+++.+|+.|+.+.|.+.|..++..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999998865
No 60
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=25.88 E-value=57 Score=31.15 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 021905 105 EKYGIHLLALSHVYSVPQLKQRCTKGLGER 134 (305)
Q Consensus 105 ~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~ 134 (305)
.+++...+.+|.+|++++++..|.++|..+
T Consensus 172 pkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 172 PKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 378999999999999999999999999876
No 61
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=25.67 E-value=51 Score=22.97 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.3
Q ss_pred CCChhHHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLHS 290 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h~ 290 (305)
-+|+.|+++..+|.=+.
T Consensus 7 ~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 7 SYCPYCKKAKEILAKLN 23 (84)
T ss_pred CCChhHHHHHHHHHHcC
Confidence 48999999999987664
No 62
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=25.10 E-value=55 Score=22.80 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.2
Q ss_pred CCChhHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLH 289 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h 289 (305)
-+|+.|++..++|.-+
T Consensus 7 ~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 7 PYCPYCTRAKALLSSK 22 (79)
T ss_pred CCChhHHHHHHHHHHc
Confidence 4899999999998643
No 63
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=53 Score=23.50 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=12.7
Q ss_pred CCCChhHHHHHHHHH
Q 021905 273 NGGCLRCKRMWQLLR 287 (305)
Q Consensus 273 ~~~c~~c~~~~~l~~ 287 (305)
..+||.|++.-++|.
T Consensus 8 ~~~CPyC~~ak~~L~ 22 (80)
T COG0695 8 KPGCPYCKRAKRLLD 22 (80)
T ss_pred CCCCchHHHHHHHHH
Confidence 347999999999986
No 64
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.60 E-value=1.6e+02 Score=28.31 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=38.0
Q ss_pred eEecCCCCHHHHHHHHhhhcCCCCC-Ccc-h---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 021905 76 VIPILGVPCGAVSSFVGFLYTSRCT-EEE-M---------EKYGIHLLALSHVYSVPQLKQRCTKGLGER 134 (305)
Q Consensus 76 ~I~l~~v~~~~~~~~L~flYt~~~~-~~~-~---------~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~ 134 (305)
.+.+.++..+++-.+|.-...-.+. .+. . .+++--++.+|..|+++.|...|..|+-++
T Consensus 107 ~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 107 KIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred ceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 4788888777765555433221121 110 0 145555677999999999999999988654
No 65
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=24.57 E-value=1.8e+02 Score=22.00 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=41.7
Q ss_pred CCCEEEEecC-CcEEehhHHHHHhccHHHHHHhcCCCCCC--CCCCeEecCCCCHHHHHHHHhhh
Q 021905 33 EPDVQILTSG-GLRIPVHASILVSASPVLENIIDRPRKHR--SSEKVIPILGVPCGAVSSFVGFL 94 (305)
Q Consensus 33 ~~DV~l~v~~-g~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~~~~I~l~~v~~~~~~~~L~fl 94 (305)
.+-+.+.||+ .+.|-+....| ..|.|+.++...-.|- .....|.|+ -+...|+.+|..|
T Consensus 38 ~G~~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 38 KGHFAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred CCeEEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 4578888875 67788998888 5799999997653221 234457774 6777888887654
No 66
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=24.23 E-value=74 Score=29.55 Aligned_cols=36 Identities=31% Similarity=0.630 Sum_probs=23.0
Q ss_pred cCCCCCCCCCCCCCcchHHHHHHHHhhhhcCcccCCCChhHHHHH
Q 021905 239 EVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMW 283 (305)
Q Consensus 239 ~~~~~~~~~~c~~~~~c~~~~~~~~h~~~c~~~~~~~c~~c~~~~ 283 (305)
||.+. ..+|+ |.-|+=--.=++ --.+|.||-|+|.+
T Consensus 28 dknf~--pc~cg-y~ic~fc~~~ir------q~lngrcpacrr~y 63 (480)
T COG5175 28 DKNFF--PCPCG-YQICQFCYNNIR------QNLNGRCPACRRKY 63 (480)
T ss_pred cCCcc--cCCcc-cHHHHHHHHHHH------hhccCCChHhhhhc
Confidence 44554 78899 887753222111 12799999999864
No 67
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=23.25 E-value=55 Score=24.34 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=10.6
Q ss_pred CCChhHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLR 287 (305)
Q Consensus 274 ~~c~~c~~~~~l~~ 287 (305)
-+|+.|+++++-+.
T Consensus 15 ~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 15 PWCPYCKKLEKELF 28 (112)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 38999999988764
No 68
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=23.14 E-value=3.1e+02 Score=21.90 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCChhhHHHHHHHHhhCCChHHHHHHH
Q 021905 81 GVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCM 160 (305)
Q Consensus 81 ~v~~~~~~~~L~flYt~~~~~~~~~~~~~~Ll~lA~~~~v~~Lk~~c~~~L~~~l~~~n~~~il~~A~~~~~~~L~~~c~ 160 (305)
.++++.|..+++.+..+.++... +.+++. ..+...-+++..+.-..+....+-..|...|.
T Consensus 39 ~i~~~~l~~li~l~~~~~Is~~~----ak~ll~---------------~~~~~~~~~~~ii~~~~l~~i~d~~el~~~v~ 99 (148)
T PF02637_consen 39 PISPEHLAELINLLEDGKISKKS----AKELLR---------------ELLENGKSPEEIIEENGLWQISDEEELEALVE 99 (148)
T ss_dssp SSTHHHHHHHHHHHHTTSSGHHH----HHHHHH---------------HHHHHTS-HHHHHHHTT---B--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHH----HHHHHH---------------HHHHcCCCHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 48889999999988888776543 222222 22222334444444444444445567888888
Q ss_pred HHHHHhHHHHh
Q 021905 161 KLAASRFKAVE 171 (305)
Q Consensus 161 ~~i~~nf~~v~ 171 (305)
..|..|-..|.
T Consensus 100 ~vi~~n~~~v~ 110 (148)
T PF02637_consen 100 EVIAENPKEVE 110 (148)
T ss_dssp HHHHC-HHHHH
T ss_pred HHHHHCHHHHH
Confidence 88888866663
No 69
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=23.10 E-value=61 Score=21.54 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=12.2
Q ss_pred CCChhHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRL 288 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~ 288 (305)
.+|+.|+++...|.-
T Consensus 8 ~~C~~C~~~~~~l~~ 22 (74)
T TIGR02196 8 PWCPPCKKAKEYLTS 22 (74)
T ss_pred CCChhHHHHHHHHHH
Confidence 489999999887753
No 70
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=22.62 E-value=66 Score=21.34 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.2
Q ss_pred CCChhHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRL 288 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~ 288 (305)
.+|+.|+++..++.-
T Consensus 8 ~~c~~c~~~~~~l~~ 22 (73)
T cd02976 8 PDCPYCKATKRFLDE 22 (73)
T ss_pred CCChhHHHHHHHHHH
Confidence 479999999888753
No 71
>PRK10329 glutaredoxin-like protein; Provisional
Probab=22.56 E-value=61 Score=23.19 Aligned_cols=15 Identities=13% Similarity=0.590 Sum_probs=12.7
Q ss_pred CCCChhHHHHHHHHH
Q 021905 273 NGGCLRCKRMWQLLR 287 (305)
Q Consensus 273 ~~~c~~c~~~~~l~~ 287 (305)
..+|+.|++...+|.
T Consensus 8 ~~~Cp~C~~ak~~L~ 22 (81)
T PRK10329 8 RNDCVQCHATKRAME 22 (81)
T ss_pred CCCCHhHHHHHHHHH
Confidence 358999999999984
No 72
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=22.11 E-value=7.1e+02 Score=23.91 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=52.0
Q ss_pred CEEEEecCCcEEehhHHHHHhccHHHHHHhcCCCCCC---CCCCeEecCCCCHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 021905 35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHR---SSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHL 111 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~yF~~mf~~~~~e~---~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~~~~~~~~~L 111 (305)
-+.+.+ .|+.|...|.-|.. |=..++.+.-+|- ....+ .+-|-+|++|+.+|.|--||++.-... +-+...
T Consensus 41 ~lvlNv-SGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~e-YFFDRDPdiFRhvLnFYRTGkLHyPR~-ECi~Ay 114 (632)
T KOG4390|consen 41 LLVLNV-SGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGE-YFFDRDPDIFRHVLNFYRTGKLHYPRH-ECISAY 114 (632)
T ss_pred EEEEec-cccchhHHHhHHHh---CchhhhCCcchheeecCCccc-ccccCChHHHHHHHHHhhcCcccCchH-HHHHHh
Confidence 455666 89999999998843 3345555442221 01111 233779999999999999999875431 111111
Q ss_pred -HHHHHhcCChHHHHHHH
Q 021905 112 -LALSHVYSVPQLKQRCT 128 (305)
Q Consensus 112 -l~lA~~~~v~~Lk~~c~ 128 (305)
=++|-+--+|.|..-|.
T Consensus 115 DeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 115 DEELAFYGLVPELIGDCC 132 (632)
T ss_pred hhhhhHhcccHHHHhhhh
Confidence 12444444677776553
No 73
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=21.83 E-value=64 Score=21.51 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=14.2
Q ss_pred CCChhHHHHHHHHHHHHh
Q 021905 274 GGCLRCKRMWQLLRLHSS 291 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h~~ 291 (305)
.+|+.|+++-.++.-.+.
T Consensus 9 ~~C~~C~~~~~~l~~l~~ 26 (67)
T cd02973 9 PTCPYCPDAVQAANRIAA 26 (67)
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 489999999888876544
No 74
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=21.29 E-value=2.9e+02 Score=19.46 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=28.3
Q ss_pred cCChhhHHHHHHHHhhCCChHHHHHHHHHHHHhHH
Q 021905 134 RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFK 168 (305)
Q Consensus 134 ~l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~nf~ 168 (305)
.++.+..++++..|...+.+.|.+.|.++|+..+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 46788899999999999999999999999987543
No 75
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=21.14 E-value=1.6e+02 Score=29.61 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 021905 135 LTIDNVVDVLQLARLCDAPDLYLRCMKLAASR 166 (305)
Q Consensus 135 l~~~n~~~il~~A~~~~~~~L~~~c~~~i~~n 166 (305)
++.+|+..++..|..++.+.+.+.|..|+..+
T Consensus 102 i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 102 ISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred echHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999963
No 76
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.12 E-value=2.2e+02 Score=21.53 Aligned_cols=39 Identities=33% Similarity=0.433 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q 021905 186 LELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECL 224 (305)
Q Consensus 186 l~~ell~~~~~~~~~~~~~~r~~~~~~~~~~L~e~~~~l 224 (305)
++.-++..+........+|..+|.+++-+.+|.+++-++
T Consensus 32 ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~Gl~al 70 (108)
T PF07219_consen 32 LLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSRGLIAL 70 (108)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777788888766554
No 77
>PRK10638 glutaredoxin 3; Provisional
Probab=21.06 E-value=72 Score=22.61 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.2
Q ss_pred CCCChhHHHHHHHHHHH
Q 021905 273 NGGCLRCKRMWQLLRLH 289 (305)
Q Consensus 273 ~~~c~~c~~~~~l~~~h 289 (305)
..+|+.|++..++|.-|
T Consensus 9 ~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 9 KATCPFCHRAKALLNSK 25 (83)
T ss_pred CCCChhHHHHHHHHHHc
Confidence 35899999999998865
No 78
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=20.98 E-value=81 Score=21.37 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=13.0
Q ss_pred CCChhHHHHHHHHHHH
Q 021905 274 GGCLRCKRMWQLLRLH 289 (305)
Q Consensus 274 ~~c~~c~~~~~l~~~h 289 (305)
.+|+.|+++..+|.-+
T Consensus 8 ~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 8 TWCGYCAQLMRTLDKL 23 (77)
T ss_pred CCChhHHHHHHHHHHc
Confidence 5899999999887544
No 79
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=20.78 E-value=3.7e+02 Score=26.34 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=38.2
Q ss_pred CEEEEecCCcEEehhHHHHHhccH--HHHHHhcCCCCC---------CCCCCeEecCCCCHHHHHHHHhhhcCCCCCCc
Q 021905 35 DVQILTSGGLRIPVHASILVSASP--VLENIIDRPRKH---------RSSEKVIPILGVPCGAVSSFVGFLYTSRCTEE 102 (305)
Q Consensus 35 DV~l~v~~g~~~~aHk~vLaa~S~--yF~~mf~~~~~e---------~~~~~~I~l~~v~~~~~~~~L~flYt~~~~~~ 102 (305)
-|.+.| ||..+..-+..|.. -| -+..+......+ ....++.-+ |=+|.+|..+++|.+||++...
T Consensus 32 ~i~lNV-GG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF-DR~P~~F~~Vl~fYrtGkLH~p 107 (477)
T KOG3713|consen 32 RVRLNV-GGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF-DRHPGAFAYVLNFYRTGKLHVP 107 (477)
T ss_pred EEEEee-CCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeee-ccChHHHHHHHHHHhcCeeccc
Confidence 477777 88887776666644 22 111221111000 011223333 5689999999999999998754
Done!