Query 021906
Match_columns 305
No_of_seqs 312 out of 839
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 1.3E-30 4.5E-35 207.5 6.6 87 137-223 5-91 (93)
2 1uhr_A SWI/SNF related, matrix 100.0 7.1E-30 2.4E-34 203.3 4.3 84 140-223 8-91 (93)
3 1v32_A AT5G08430, hypothetical 99.9 1.2E-26 4.1E-31 187.2 7.1 73 145-217 15-93 (101)
4 1q1v_A DEK protein; winged-hel 99.7 1.1E-17 3.9E-22 126.4 6.9 57 1-57 11-68 (70)
5 1v31_A Hypothetical protein RA 99.5 1.3E-14 4.4E-19 115.1 4.8 47 256-304 5-51 (93)
6 1uhr_A SWI/SNF related, matrix 99.4 7.7E-14 2.6E-18 110.7 2.0 42 261-304 10-51 (93)
7 1v32_A AT5G08430, hypothetical 99.3 8.1E-13 2.8E-17 106.4 5.1 44 261-304 12-59 (101)
8 3dac_M MDM4 protein; MDMX, MDM 97.0 0.00059 2E-08 56.5 4.8 77 144-220 25-110 (130)
9 1z1m_A Ubiquitin-protein ligas 96.8 0.002 6.7E-08 52.7 6.2 76 144-219 28-109 (119)
10 3fea_A MDM4 protein; HDMX, HDM 96.8 0.00095 3.2E-08 53.1 3.6 75 144-218 16-99 (100)
11 2z5s_M MDM4 protein, zebrafish 96.6 0.0027 9.2E-08 52.9 5.5 76 143-218 23-107 (140)
12 1ycq_A MDM2, MDM2; anti-oncoge 96.5 0.0029 9.9E-08 50.8 4.8 72 143-214 11-88 (107)
13 2axi_A Ubiquitin-protein ligas 96.2 0.0023 7.8E-08 51.9 2.9 73 143-215 11-89 (115)
14 2kwl_A ACP, acyl carrier prote 72.1 3 0.0001 30.2 3.3 58 155-215 1-58 (84)
15 2cg5_B Fatty acid synthase; tr 52.5 8.7 0.0003 29.4 2.7 40 5-44 9-62 (91)
16 2jq4_A AGR_C_4658P, hypothetic 51.5 15 0.00053 28.2 4.1 43 2-44 18-79 (105)
17 2lol_A ACP, acyl carrier prote 50.7 25 0.00084 24.8 4.9 43 1-43 1-61 (81)
18 3ce7_A Specific mitochodrial a 50.5 20 0.00068 27.8 4.6 41 3-43 16-78 (107)
19 1f80_D Acyl carrier protein; t 46.7 12 0.00041 26.5 2.6 55 158-215 2-56 (81)
20 2ava_A ACP I, acyl carrier pro 46.3 36 0.0012 24.0 5.2 24 20-43 36-59 (82)
21 2lol_A ACP, acyl carrier prote 41.5 26 0.00088 24.7 3.7 54 159-215 2-55 (81)
22 2dnw_A Acyl carrier protein; A 40.6 18 0.0006 27.2 2.8 60 153-215 5-64 (99)
23 2cnr_A FAS, ACP, acyl carrier 40.1 28 0.00095 24.5 3.7 54 159-215 3-56 (82)
24 2keb_A DNA polymerase subunit 39.5 37 0.0013 26.8 4.4 42 13-57 16-57 (101)
25 1dd4_C 50S ribosomal protein L 37.6 27 0.00093 22.9 2.9 22 19-40 12-33 (40)
26 2cgq_A Acyl carrier protein AC 36.5 32 0.0011 27.1 3.8 40 4-43 28-80 (113)
27 1nq4_A Oxytetracycline polyket 34.0 59 0.002 24.1 4.8 42 3-44 5-63 (95)
28 1dv5_A APO-DCP, APO-D-alanyl c 32.7 25 0.00086 25.2 2.4 53 160-215 1-53 (80)
29 2l4b_A Acyl carrier protein; i 31.7 53 0.0018 23.6 4.1 23 21-43 44-66 (88)
30 2do1_A Nuclear protein HCC-1; 31.2 92 0.0031 21.7 5.0 40 17-57 7-46 (55)
31 1x3o_A Acyl carrier protein; s 28.8 26 0.00087 24.5 1.8 54 159-215 1-54 (80)
32 2kjs_A Putative acyl carrier p 28.8 78 0.0027 23.4 4.7 54 1-54 1-72 (87)
33 2ahq_A Sigma-54, RNA polymeras 28.7 69 0.0024 23.7 4.3 41 2-43 16-57 (76)
34 1vku_A Acyl carrier protein; T 27.8 40 0.0014 25.7 2.9 55 157-215 11-65 (100)
35 2ava_A ACP I, acyl carrier pro 27.1 49 0.0017 23.3 3.2 53 160-215 1-53 (82)
36 1jjr_A KU70, thyroid autoantig 25.7 97 0.0033 25.9 5.1 45 10-55 51-95 (151)
37 1klp_A ACP, ACPM, meromycolate 25.0 49 0.0017 25.4 3.0 55 158-215 2-56 (115)
38 1af8_A Actinorhodin polyketide 24.4 49 0.0017 23.6 2.7 54 161-215 3-57 (86)
39 2iie_A Integration HOST factor 24.3 1.9E+02 0.0065 24.9 7.0 50 6-55 30-79 (204)
40 2ehs_A ACP, acyl carrier prote 24.2 97 0.0033 21.1 4.3 23 21-43 34-56 (77)
41 1l0i_A Acyl carrier protein; a 24.1 97 0.0033 21.4 4.3 22 22-43 37-58 (78)
42 2cgq_A Acyl carrier protein AC 21.5 34 0.0012 26.9 1.4 51 156-215 24-74 (113)
43 3nrk_A LIC12922; NC domain, pa 20.9 1.3E+02 0.0046 27.2 5.6 48 2-51 78-125 (325)
44 1v54_E Cytochrome C oxidase po 20.6 1.7E+02 0.0057 23.3 5.2 44 3-49 7-50 (109)
45 3e6c_C CPRK, cyclic nucleotide 20.4 68 0.0023 27.0 3.3 47 148-198 181-228 (250)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=1.3e-30 Score=207.48 Aligned_cols=87 Identities=23% Similarity=0.547 Sum_probs=83.4
Q ss_pred CCCCCccccCCHHHHhhhCCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCCC
Q 021906 137 GGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWP 216 (305)
Q Consensus 137 ~~g~~k~~~lS~~La~~lG~~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~p 216 (305)
.++++.+|+||++||+|||..++||++||++||+|||+||||||.||+.|+||++|+.|||+++|.||+|+++|++||.|
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p 84 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 84 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q 021906 217 LDSDDVI 223 (305)
Q Consensus 217 l~p~~~~ 223 (305)
++|+...
T Consensus 85 ~~Pi~~~ 91 (93)
T 1v31_A 85 PPPSGPS 91 (93)
T ss_dssp CCCSSCC
T ss_pred CCCeeCC
Confidence 9998764
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.96 E-value=7.1e-30 Score=203.28 Aligned_cols=84 Identities=24% Similarity=0.563 Sum_probs=80.8
Q ss_pred CCccccCCHHHHhhhCCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCCCCCC
Q 021906 140 FSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDS 219 (305)
Q Consensus 140 ~~k~~~lS~~La~~lG~~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~pl~p 219 (305)
...+|+||++||+|||..++||++||++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.|++|
T Consensus 8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 87 (93)
T ss_dssp SCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSC
T ss_pred CCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 021906 220 DDVI 223 (305)
Q Consensus 220 ~~~~ 223 (305)
+...
T Consensus 88 I~i~ 91 (93)
T 1uhr_A 88 SGPS 91 (93)
T ss_dssp CCSS
T ss_pred eeCC
Confidence 9764
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.93 E-value=1.2e-26 Score=187.18 Aligned_cols=73 Identities=37% Similarity=0.557 Sum_probs=69.9
Q ss_pred cCCHHHHhhh---CC---CCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCCCC
Q 021906 145 ALSPQLQEFI---GV---TELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPL 217 (305)
Q Consensus 145 ~lS~~La~~l---G~---~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~pl 217 (305)
-+|++|++|| |. .++||++||++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++||.+.
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 5899999999 87 5799999999999999999999999999999999999999999999999999999999763
No 4
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.71 E-value=1.1e-17 Score=126.37 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHh-CCCChhhhHHHHHHHHHHHhh
Q 021906 1 MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDF-GVDLTDKKIFIREQVDLFLQS 57 (305)
Q Consensus 1 m~sd~ei~~~I~~IL~~aDl~~vT~K~VR~~Le~~f-gvDLs~kK~~I~~~I~~~l~~ 57 (305)
+|||++|...|++||++|||++||.|+||++|+++| |+||++||+||+++|+.+|+.
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~~ 68 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELISL 68 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999999 999999999999999999963
No 5
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.49 E-value=1.3e-14 Score=115.15 Aligned_cols=47 Identities=32% Similarity=0.564 Sum_probs=43.6
Q ss_pred CCCCCCCCCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHHhcCCCcccCC
Q 021906 256 KSGFLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQVSLRS 304 (305)
Q Consensus 256 ~~g~~~~~~lS~~L~~~~g~~~~~~~r~~v~k~~W~YIk~~~Lqdp~nk 304 (305)
...+...|.+|++||+|+|.. ++||++||++||+|||.||||||.||
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k 51 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIE--VETRPRIIAAIWHYVKARKLQNPNDP 51 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCS--EECSHHHHHHHHHHHHHTTCBCSSCS
T ss_pred CCCCCCccccCHHHHHHHCCC--ccCHHHHHHHHHHHHHHccCcCcccC
Confidence 345678999999999999987 99999999999999999999999997
No 6
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.38 E-value=7.7e-14 Score=110.70 Aligned_cols=42 Identities=29% Similarity=0.551 Sum_probs=40.0
Q ss_pred CCCCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHHhcCCCcccCC
Q 021906 261 APLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQVSLRS 304 (305)
Q Consensus 261 ~~~~lS~~L~~~~g~~~~~~~r~~v~k~~W~YIk~~~Lqdp~nk 304 (305)
..|.+|++||+|+|.. ++||++||++||+|||.||||||.||
T Consensus 10 ~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k 51 (93)
T 1uhr_A 10 PQFKLDPRLARLLGIH--TQTRPVIIQALWQYIKTHKLQDPHER 51 (93)
T ss_dssp CEEEECTTHHHHTCCS--EEEHHHHHHHHHHHHHHTTCBCSSCS
T ss_pred CccCcCHHHHHHHCCC--ccCHHHHHHHHHHHHHhccCCCcccc
Confidence 5788999999999977 99999999999999999999999997
No 7
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.33 E-value=8.1e-13 Score=106.36 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCCCCcHHHHHhh---CCCC-CCCCHHHHHHHHHHHHHhcCCCcccCC
Q 021906 261 APLQLSDALIKFL---GTGE-SALPRSDVIKRMWDYIKEKNLQVSLRS 304 (305)
Q Consensus 261 ~~~~lS~~L~~~~---g~~~-~~~~r~~v~k~~W~YIk~~~Lqdp~nk 304 (305)
..--+|++|++|| |.+. .++||++||++||+|||+||||||.||
T Consensus 12 ~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~K 59 (101)
T 1v32_A 12 FVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNK 59 (101)
T ss_dssp SSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCT
T ss_pred ecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccC
Confidence 3446999999999 8732 479999999999999999999999997
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.04 E-value=0.00059 Score=56.46 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=65.2
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhh---HHHHHHccC
Q 021906 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQ---MNKALSKHI 214 (305)
Q Consensus 144 ~~lS~~La~~l---G~--~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD-~~Lk~lfg~~~i~~~~---m~k~L~~Hl 214 (305)
++--++|-.|| |. ...|..+|+-.+=+||-.+.|.||.+..+|.|- +.|..|||+++|++-+ +-..|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 44456677776 53 578999999999999999999999999999996 7889999999999998 999999999
Q ss_pred CCCCCc
Q 021906 215 WPLDSD 220 (305)
Q Consensus 215 ~pl~p~ 220 (305)
.++..-
T Consensus 105 v~~~~~ 110 (130)
T 3dac_M 105 VILNNS 110 (130)
T ss_dssp EEC---
T ss_pred ecccCc
Confidence 887743
No 9
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.84 E-value=0.002 Score=52.66 Aligned_cols=76 Identities=25% Similarity=0.344 Sum_probs=61.0
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHHHHHHccCCCC
Q 021906 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKHIWPL 217 (305)
Q Consensus 144 ~~lS~~La~~l---G~--~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD-~~Lk~lfg~~~i~~~~m~k~L~~Hl~pl 217 (305)
++-.+.|-.|| |. ...|+.+|+..|=+||-.+.|.|+.+..+|.|. +.|-.|||+.+|++-+-..+...|...+
T Consensus 28 VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 107 (119)
T 1z1m_A 28 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 107 (119)
T ss_dssp CCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSC
T ss_pred ccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 44445555555 53 568999999999999999999999999999997 7779999999999998777766666544
Q ss_pred CC
Q 021906 218 DS 219 (305)
Q Consensus 218 ~p 219 (305)
-.
T Consensus 108 v~ 109 (119)
T 1z1m_A 108 VV 109 (119)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 10
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.75 E-value=0.00095 Score=53.08 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=62.4
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChh---hHHHHHHccC
Q 021906 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMF---QMNKALSKHI 214 (305)
Q Consensus 144 ~~lS~~La~~l---G~--~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD-~~Lk~lfg~~~i~~~---~m~k~L~~Hl 214 (305)
++--++|-.|| |. +..|..+|+..+=+||-.+.|.||.+..+|.|- +.|-.+||+++|++- .+-+.|.+||
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nL 95 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNL 95 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhc
Confidence 44456677666 53 578999999999999999999999999999996 788899999999988 7888899988
Q ss_pred CCCC
Q 021906 215 WPLD 218 (305)
Q Consensus 215 ~pl~ 218 (305)
..+.
T Consensus 96 v~~~ 99 (100)
T 3fea_A 96 VTLA 99 (100)
T ss_dssp EC--
T ss_pred eecC
Confidence 6543
No 11
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.61 E-value=0.0027 Score=52.87 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=63.5
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHH---HHHHcc
Q 021906 143 LCALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMN---KALSKH 213 (305)
Q Consensus 143 ~~~lS~~La~~l---G~--~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD-~~Lk~lfg~~~i~~~~m~---k~L~~H 213 (305)
.++--+.|-.|| |. ...|+.+|+-.|=+||-...|.|+.+..+|.|. +.|-.|||+.+|++-+.. +.|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 456677888887 54 579999999999999999999999999999997 777999999999988765 666666
Q ss_pred CCCCC
Q 021906 214 IWPLD 218 (305)
Q Consensus 214 l~pl~ 218 (305)
|.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 66555
No 12
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.49 E-value=0.0029 Score=50.81 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=58.7
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHHHHHHccC
Q 021906 143 LCALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKHI 214 (305)
Q Consensus 143 ~~~lS~~La~~l---G~--~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD-~~Lk~lfg~~~i~~~~m~k~L~~Hl 214 (305)
.++-.+.|-.+| |. ...|+.+|+-.|=+||-...|.||.+..+|.|. +.|-.|||+.+|++-+...+...|.
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~ 88 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMIS 88 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHH
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 344566666666 43 578999999999999999999999999999997 7779999999999988774444443
No 13
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=96.25 E-value=0.0023 Score=51.94 Aligned_cols=73 Identities=26% Similarity=0.380 Sum_probs=59.7
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHHHHHHccCC
Q 021906 143 LCALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 143 ~~~lS~~La~~l---G~--~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD-~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
.++-.+.|-.|| |. ...|+.+|+-.+=+||-...|.||.+..+|.|. +.|-.|||+.+|++-+-..+...+..
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~ 89 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYR 89 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHT
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 344556666666 43 578999999999999999999999999999997 77799999999999877666555543
No 14
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=72.07 E-value=3 Score=30.25 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=48.0
Q ss_pred CCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 155 GVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 155 G~~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
|...|+|.+|...|.++|.+.--.++ ..|..|..|..-+|-|++.+.+|.-.|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 56689999999999999988632333 56889999977799999999999999998873
No 15
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=52.46 E-value=8.7 Score=29.43 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCC--------------CCCccHHHHHHHHHHHhCCCChhhh
Q 021906 5 SELIARLQEFLKNSD--------------LNTTTTGIVRRQLEKDFGVDLTDKK 44 (305)
Q Consensus 5 ~ei~~~I~~IL~~aD--------------l~~vT~K~VR~~Le~~fgvDLs~kK 44 (305)
+.|...|-.+|.-.+ ++.+..-.||..|++.||+.|+..-
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~ 62 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVRE 62 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHH
Confidence 567888889987654 3455556799999999999998643
No 16
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=51.52 E-value=15 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhhC-----C--------------CCCccHHHHHHHHHHHhCCCChhhh
Q 021906 2 VSDSELIARLQEFLKNS-----D--------------LNTTTTGIVRRQLEKDFGVDLTDKK 44 (305)
Q Consensus 2 ~sd~ei~~~I~~IL~~a-----D--------------l~~vT~K~VR~~Le~~fgvDLs~kK 44 (305)
++.+++...|.+||... + ++.+..-.+...||+.|||.+....
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~ 79 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNL 79 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45567777777777763 1 2334455799999999999998754
No 17
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=50.70 E-value=25 Score=24.84 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHhhC---CCCCc---------------cHHHHHHHHHHHhCCCChhh
Q 021906 1 MVSDSELIARLQEFLKNS---DLNTT---------------TTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 1 m~sd~ei~~~I~~IL~~a---Dl~~v---------------T~K~VR~~Le~~fgvDLs~k 43 (305)
|-|.+++...|.+|++.. +...+ ..-.+...||+.||+.+...
T Consensus 1 Mm~~~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~ 61 (81)
T 2lol_A 1 MSTTDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDD 61 (81)
T ss_dssp CCSHHHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHH
Confidence 667888888888887652 21222 22368899999999998764
No 18
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=50.51 E-value=20 Score=27.76 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHhhC--C--------------------CCCccHHHHHHHHHHHhCCCChhh
Q 021906 3 SDSELIARLQEFLKNS--D--------------------LNTTTTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 3 sd~ei~~~I~~IL~~a--D--------------------l~~vT~K~VR~~Le~~fgvDLs~k 43 (305)
+.++|...|.+||+.. + ++.+..-.+.-.||+.|||.+..-
T Consensus 16 ~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~ 78 (107)
T 3ce7_A 16 DINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDE 78 (107)
T ss_dssp CHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHH
Confidence 6788999999998764 1 334455578999999999999764
No 19
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=46.71 E-value=12 Score=26.55 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=42.9
Q ss_pred CccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 158 ELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 158 ~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
.|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-+++.+.+|...|..+|-
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 47888888899998887642333 46889999977789999999999999999984
No 20
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=46.26 E-value=36 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=19.5
Q ss_pred CCCccHHHHHHHHHHHhCCCChhh
Q 021906 20 LNTTTTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 20 l~~vT~K~VR~~Le~~fgvDLs~k 43 (305)
++.+..-.+...||+.||+++...
T Consensus 36 ~DSl~~vel~~~le~~fgi~i~~~ 59 (82)
T 2ava_A 36 ADSLDTVEIVMNLEEEFGINVDED 59 (82)
T ss_dssp TCCSCHHHHHHHHHHHTTCCCCGG
T ss_pred CCHHHHHHHHHHHHHHHCCccCHH
Confidence 345666789999999999999764
No 21
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=41.53 E-value=26 Score=24.74 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 159 ~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-+++.+.+|...|..+|-
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6888999999888887532233 45788888877789999999999999999873
No 22
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.61 E-value=18 Score=27.18 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=46.5
Q ss_pred hhCCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 153 FIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 153 ~lG~~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
|.++..|++.+|...|.++|.+.--.++ ..|..|..|..-+|.|++.+.+|.-.|..+|-
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 3456679999999999999987632233 45777887754579999999999999999884
No 23
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=40.08 E-value=28 Score=24.48 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 159 ~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+|.+++.+.+|...|..+|-
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7899999999998887642232 46778888866678999999999999999984
No 24
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.47 E-value=37 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=29.2
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHhh
Q 021906 13 EFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57 (305)
Q Consensus 13 ~IL~~aDl~~vT~K~VR~~Le~~fgvDLs~kK~~I~~~I~~~l~~ 57 (305)
-+...--.+.||...|+++|+. |||+.++ +.|..+++.++.-
T Consensus 16 ~~~~~~~~~~Vsae~L~eEfde-fGi~~~d--~VldKc~ELC~~y 57 (101)
T 2keb_A 16 VLFQGPGSMSASAQQLAEELQI-FGLDCEE--ALIEKLVELCVQY 57 (101)
T ss_dssp --------CCCCHHHHHHHHHH-HTCBCCH--HHHHHHHHHHHHH
T ss_pred heeeCCchhhccHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHHc
Confidence 3445566889999999999975 9999999 7888888887753
No 25
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=37.62 E-value=27 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=16.6
Q ss_pred CCCCccHHHHHHHHHHHhCCCC
Q 021906 19 DLNTTTTGIVRRQLEKDFGVDL 40 (305)
Q Consensus 19 Dl~~vT~K~VR~~Le~~fgvDL 40 (305)
.|+-+-...+.++||++|||+-
T Consensus 12 ~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCS
T ss_pred hCcHHHHHHHHHHHHHHHCCCc
Confidence 3444445689999999999974
No 26
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=36.50 E-value=32 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhC-----------C--CCCccHHHHHHHHHHHhCCCChhh
Q 021906 4 DSELIARLQEFLKNS-----------D--LNTTTTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 4 d~ei~~~I~~IL~~a-----------D--l~~vT~K~VR~~Le~~fgvDLs~k 43 (305)
.++|...|.+||... | ++.+..-.+...||+.|||.+...
T Consensus 28 ~~ei~~~v~~il~e~l~I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e 80 (113)
T 2cgq_A 28 EEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFR 80 (113)
T ss_dssp HHHHHHHHHHHHTCCSCCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHH
Confidence 467888999998762 2 345555689999999999999874
No 27
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=34.01 E-value=59 Score=24.13 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhhC---C--------------CCCccHHHHHHHHHHHhCCCChhhh
Q 021906 3 SDSELIARLQEFLKNS---D--------------LNTTTTGIVRRQLEKDFGVDLTDKK 44 (305)
Q Consensus 3 sd~ei~~~I~~IL~~a---D--------------l~~vT~K~VR~~Le~~fgvDLs~kK 44 (305)
+-++|...|.++|... + ++.+..-.+...||+.|||.|....
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~ 63 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDA 63 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTH
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHH
Confidence 5688888899988743 1 3445556899999999999998743
No 28
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=32.65 E-value=25 Score=25.24 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 160 ARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 160 sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
++.++...|-+||.+.--.++ ..|..|..|..+.+-+++.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 466788889999987653332 34788888877655999999999999999983
No 29
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=31.71 E-value=53 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.3
Q ss_pred CCccHHHHHHHHHHHhCCCChhh
Q 021906 21 NTTTTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 21 ~~vT~K~VR~~Le~~fgvDLs~k 43 (305)
+.+..-.++..||+.||+.+...
T Consensus 44 DSl~~vel~~~lE~~fgi~i~~~ 66 (88)
T 2l4b_A 44 DSLDFVDLIMSLEERFSLEISDE 66 (88)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cHHHHHHHHHHHHHHHCCCcCHH
Confidence 34455579999999999999864
No 30
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=31.22 E-value=92 Score=21.67 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=30.7
Q ss_pred hCCCCCccHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHhh
Q 021906 17 NSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57 (305)
Q Consensus 17 ~aDl~~vT~K~VR~~Le~~fgvDLs~kK~~I~~~I~~~l~~ 57 (305)
..|+..+|+..++..|.. +|.+.+.+|+.+-+-|..+|..
T Consensus 7 ~~~l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 7 GVELHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CCCTTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc
Confidence 468999999999987765 7889888887666666666653
No 31
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=28.84 E-value=26 Score=24.49 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 159 ~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
|+|.++...|.++|.+.-=.+ ...|..|..|..-+|-+++.+.+|...|..+|-
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 678888888888887653122 245778888866789999999999999998873
No 32
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=28.78 E-value=78 Score=23.40 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhhC--------C------CCCccHHHHHHHHHHHhCCCChhhh----HHHHHHHHHH
Q 021906 1 MVSDSELIARLQEFLKNS--------D------LNTTTTGIVRRQLEKDFGVDLTDKK----IFIREQVDLF 54 (305)
Q Consensus 1 m~sd~ei~~~I~~IL~~a--------D------l~~vT~K~VR~~Le~~fgvDLs~kK----~~I~~~I~~~ 54 (305)
|-|-++|..-+.++|..- . ++.+..-.+..+||+.|||.++..- .-|++++..+
T Consensus 1 M~tle~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~~~I 72 (87)
T 2kjs_A 1 MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLV 72 (87)
T ss_dssp CCSHHHHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHHHHH
Confidence 667788888888888631 1 2334444689999999999998753 3345554433
No 33
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=28.69 E-value=69 Score=23.72 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCC-ccHHHHHHHHHHHhCCCChhh
Q 021906 2 VSDSELIARLQEFLKNSDLNT-TTTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 2 ~sd~ei~~~I~~IL~~aDl~~-vT~K~VR~~Le~~fgvDLs~k 43 (305)
.|.+.|...|.+|+..-|... +|-.+|...|.+. |++++-|
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR 57 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR 57 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH
Confidence 578899999999999999754 6888999999887 9999865
No 34
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=27.79 E-value=40 Score=25.70 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 157 TELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 157 ~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
..|.|.++...|+++|.+.--.+| ..|..|..| .-+|.|++.+.+|.-.|...|-
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHHC
Confidence 478999999999999988643333 468899999 6789999999999999988873
No 35
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=27.11 E-value=49 Score=23.31 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 160 ARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 160 sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
||.++...|.++|.+.=-.++. ..|-.|..|. =+|.+++.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4677778888877775322322 2577888887 469999999999999999883
No 36
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=25.68 E-value=97 Score=25.94 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=34.1
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHhCCCChhhhHHHHHHHHHHH
Q 021906 10 RLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFL 55 (305)
Q Consensus 10 ~I~~IL~~aDl~~vT~K~VR~~Le~~fgvDLs~kK~~I~~~I~~~l 55 (305)
.|.+....-.|..+|+..+|..|..+ |+..+.+|+.+=+.|..+|
T Consensus 51 ~i~~l~~~g~L~kltV~eLK~~l~~~-gL~~~GkKadLI~Ri~~~l 95 (151)
T 1jjr_A 51 ELKTHISKGTLGKFTVPMLKEACRAY-GLKSGLKKQELLEALTKHF 95 (151)
T ss_dssp HHHHHHHHTCTTSSCHHHHHHHHHHH-TCCCCSSSHHHHHHHHHTT
T ss_pred HHHHHHHcCcHHhccHHHHHHHHHHc-CCCCcccHHHHHHHHHHHH
Confidence 45556688999999999999999886 8888888876533444443
No 37
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=25.02 E-value=49 Score=25.43 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=44.0
Q ss_pred CccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 158 ELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 158 ~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
.|++.+|...|..+|.+.-=.++ ..|..|..|..-+|.|++.+.+|.-.|..+|-
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHC
Confidence 37889999999998887532233 45788888876789999999999999999884
No 38
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=24.40 E-value=49 Score=23.60 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCC-CCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 161 RTEVVKQLWAYIREKDLQDPN-NRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 161 R~~vvk~lW~YIK~n~LqdP~-nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
|..+...|.++|.+.=-.++. .-..|..|..| .-+|.|++.+.+|.-.|..+|-
T Consensus 3 ~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~fg 57 (86)
T 1af8_A 3 TLLTTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYG 57 (86)
T ss_dssp CSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHHC
Confidence 333445566666554323333 11256788888 5579999999999999999884
No 39
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=24.25 E-value=1.9e+02 Score=24.88 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCCCCCccHHHHHHHHHHHhCCCChhhhHHHHHHHHHHH
Q 021906 6 ELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFL 55 (305)
Q Consensus 6 ei~~~I~~IL~~aDl~~vT~K~VR~~Le~~fgvDLs~kK~~I~~~I~~~l 55 (305)
.|...|.+-|....-.++|.+.+...|.+..|+.-.+=+.+|+.+++.+.
T Consensus 30 ~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~~i~ 79 (204)
T 2iie_A 30 EMLEHMASTLAQGGSGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIR 79 (204)
T ss_dssp HHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45556666677777889999999999999988755444555555444433
No 40
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=24.25 E-value=97 Score=21.07 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=18.4
Q ss_pred CCccHHHHHHHHHHHhCCCChhh
Q 021906 21 NTTTTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 21 ~~vT~K~VR~~Le~~fgvDLs~k 43 (305)
+.+..-.++..|++.||++++..
T Consensus 34 DSl~~~~l~~~le~~~gi~i~~~ 56 (77)
T 2ehs_A 34 DSLDVVELIMAFEEEFGIEIPDE 56 (77)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHhCCccCHH
Confidence 44555689999999999999764
No 41
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=24.14 E-value=97 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=17.4
Q ss_pred CccHHHHHHHHHHHhCCCChhh
Q 021906 22 TTTTGIVRRQLEKDFGVDLTDK 43 (305)
Q Consensus 22 ~vT~K~VR~~Le~~fgvDLs~k 43 (305)
.+..-.++..||+.||+++...
T Consensus 37 Sl~~~el~~~le~~fgi~i~~~ 58 (78)
T 1l0i_A 37 SLDTVELVMALEEEFDTEIPDE 58 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHH
Confidence 3444579999999999999764
No 42
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=21.55 E-value=34 Score=26.94 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=41.7
Q ss_pred CCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 021906 156 VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (305)
Q Consensus 156 ~~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD~~Lk~lfg~~~i~~~~m~k~L~~Hl~ 215 (305)
...| |.+|...|.++|.+.-- |..|..|..-+|-|++.+.+|.-.|...|-
T Consensus 24 ~~~M-~~ei~~~v~~il~e~l~--------I~~d~~l~~dLGlDSLd~veLi~~LEe~Fg 74 (113)
T 2cgq_A 24 QGAM-EEAINATIQRILRTDRG--------ITANQVLVDDLGFDSLKLFQLITELEDEFD 74 (113)
T ss_dssp --CH-HHHHHHHHHHHHTCCSC--------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHT
T ss_pred cccc-HHHHHHHHHHHHHHHhC--------CCCCCchhhhcCCCHHHHHHHHHHHHHHhC
Confidence 3357 89999999999987541 778888877899999999999999988873
No 43
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=20.87 E-value=1.3e+02 Score=27.17 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHhCCCChhhhHHHHHHH
Q 021906 2 VSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQV 51 (305)
Q Consensus 2 ~sd~ei~~~I~~IL~~aDl~~vT~K~VR~~Le~~fgvDLs~kK~~I~~~I 51 (305)
||+++|...|...+.... ..|...++..|+...|++...-+..|+..+
T Consensus 78 vsd~ev~~~i~~~~~~~~--~~~~~~~~~~L~~~~g~t~~~~~~~lr~~l 125 (325)
T 3nrk_A 78 VNEQRVDSEIEKRMEVMG--ITNRKQFEKTMETSSGMPFELWVTELPYQI 125 (325)
T ss_dssp CCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCSCHHHHGGGHHHHH
T ss_pred cCHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 789999999999333333 667888999999889999999888887664
No 44
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=20.59 E-value=1.7e+02 Score=23.29 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHhCCCChhhhHHHHH
Q 021906 3 SDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIRE 49 (305)
Q Consensus 3 sd~ei~~~I~~IL~~aDl~~vT~K~VR~~Le~~fgvDLs~kK~~I~~ 49 (305)
|++++-.+-.+.....|++.-- ||+.|...||.||-+-=+.|..
T Consensus 7 t~eeF~aRy~~~F~~~~iD~~e---~rrglN~l~~~DlVP~P~ii~a 50 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDAWE---LRKGMNTLVGYDLVPEPKIIDA 50 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHH---HHHHHHHHTTSSBCCCHHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHH---HHHHHHHHhccccCCCcHHHHH
Confidence 7888889999999998887654 9999999999999886665533
No 45
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=20.43 E-value=68 Score=27.04 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=33.4
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCC
Q 021906 148 PQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGV 198 (305)
Q Consensus 148 ~~La~~lG~~~~sR~~vvk~lW~YIK~n~LqdP~nkr~I~cD-~~Lk~lfg~ 198 (305)
.+||.+||++..| |.++-.-.+..++-.-..+++++.| +.|+.+.+.
T Consensus 181 ~~iA~~lG~sr~t----vsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~ 228 (250)
T 3e6c_C 181 KSIGEITGVHHVT----VSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp HHHHHHHTCCHHH----HHHHHHHHHHTTSEEECSSEEEESCHHHHHHHHTS
T ss_pred HHHHHHhCCcHHH----HHHHHHHHHHCCCeEeCCCEEEEecHHHHHHHHcc
Confidence 4799999975433 3344445567788777778888888 778888764
Done!