BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021910
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/164 (74%), Positives = 139/164 (84%), Gaps = 3/164 (1%)
Query: 5 AELELPPGFRFHPTDEELVNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMARYGEKE 64
AEL LPPGFRFHPTD+ELV HYLCRK AG + VPIIAE+DLYK+DPW+LPE A +G +E
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE 70
Query: 65 WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPKGIK 123
WYFF+PRDRKYPNGSRPNRAAG+GYWKATGADKP+ + +TLGIKKALVFYAGKAP+G+K
Sbjct: 71 WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 130
Query: 124 TNWIMHEYR--PANVHRSPATKNNLRLDDWVLCRLYNKKGRMEK 165
T+WIMHEYR A + A K +LRLDDWVLCRLYNKK EK
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 127/163 (77%), Gaps = 6/163 (3%)
Query: 5 AELELPPGFRFHPTDEELVNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMARYGEKE 64
+L LPPGFRF+PTDEEL+ YLCRK AG S+ +IAEIDLYK+DPW LP A +GEKE
Sbjct: 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 72
Query: 65 WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPKGIK 123
WYFFSPRDRKYPNGSRPNR AGSGYWKATG DK I + + +GIKKALVFY GKAPKG K
Sbjct: 73 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 132
Query: 124 TNWIMHEYRPANVHRSPATKN-NLRLDDWVLCRLYNKKGRMEK 165
TNWIMHEYR P+ +N + +LDDWVLCR+Y K+ +K
Sbjct: 133 TNWIMHEYRLIE----PSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 127/163 (77%), Gaps = 6/163 (3%)
Query: 5 AELELPPGFRFHPTDEELVNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMARYGEKE 64
+L LPPGFRF+PTDEEL+ YLCRK AG S+ +IAEIDLYK+DPW LP A +GEKE
Sbjct: 16 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 75
Query: 65 WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPKGIK 123
WYFFSPRDRKYPNGSRPNR AGSGYWKATG DK I + + +GIKKALVFY GKAPKG K
Sbjct: 76 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 135
Query: 124 TNWIMHEYRPANVHRSPATKN-NLRLDDWVLCRLYNKKGRMEK 165
TNWIMHEYR P+ +N + +LDDWVLCR+Y K+ +K
Sbjct: 136 TNWIMHEYRLIE----PSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 10 PPGFRFHPTDEELVNHYLCRKCAGL----------PISVPIIAE-IDLYKYDPWELP 55
P G R HP +E H+LC + P + I +E +++ PWE+P
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP 71
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 10 PPGFRFHPTDEELVNHYLCRKCAGL----------PISVPIIAE-IDLYKYDPWELP 55
P G R HP +E H+LC + P + I +E +++ PWE+P
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP 71
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 10 PPGFRFHPTDEELVNHYLCRKCAGL----------PISVPIIAE-IDLYKYDPWELP 55
P G R HP +E H+LC + P + I +E +++ PWE+P
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP 71
>pdb|2WM4|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp124 In Complex With Phytanic Acid
pdb|2WM5|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp124
Length = 435
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 24/102 (23%)
Query: 23 VNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMARYGEKEWYFFSPRDRK-----YPN 77
+N + + G P IA+I+L D W L + R G F+ R+ +P
Sbjct: 10 LNTAIATRVNGTPPPEVPIADIELGSLDFWALDDDVRDGA-----FATLRREAPISFWPT 64
Query: 78 GSRPNRAAGSGYWKATGADKPIGKPKTLGIKKALVFYAGKAP 119
P AG+G+W T D VFYA + P
Sbjct: 65 IELPGFVAGNGHWALTKYDD--------------VFYASRHP 92
>pdb|1MG2|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
Length = 390
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 15 FHPTDEELVNHYLCRKCAGL---PISVPIIAEIDLYKYDPWELPEMARYGEKE 64
FHP DE L+NH + AG P I +IDL D LP + E E
Sbjct: 224 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 276
>pdb|2GC4|A Chain A, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|E Chain E, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|I Chain I, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|M Chain M, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC7|A Chain A, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|E Chain E, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|I Chain I, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|M Chain M, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2J55|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J55|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J56|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J56|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J57|G Chain G, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|I Chain I, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|3L4M|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex.
pdb|3L4M|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex.
pdb|3L4O|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3L4O|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3ORV|D Chain D, Crystal Structure Of The Y294h-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3ORV|F Chain F, Crystal Structure Of The Y294h-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3PXS|D Chain D, Crystal Structure Of Diferrous Maug In Complex With
Pre-Methylamine Dehydrogenase:
pdb|3PXS|F Chain F, Crystal Structure Of Diferrous Maug In Complex With
Pre-Methylamine Dehydrogenase:
pdb|3PXT|D Chain D, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3PXT|F Chain F, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3RLM|D Chain D, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3RLM|F Chain F, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3RMZ|D Chain D, Crystal Structure Of The W199f-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RMZ|F Chain F, Crystal Structure Of The W199f-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN0|D Chain D, Crystal Structure Of The W199k-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN0|F Chain F, Crystal Structure Of The W199k-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN1|D Chain D, Crystal Structure Of The W199e-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN1|F Chain F, Crystal Structure Of The W199e-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SJL|D Chain D, Crystal Structure Of The P107s-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SJL|F Chain F, Crystal Structure Of The P107s-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SVW|D Chain D, Crystal Structure Of The P107v-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SVW|F Chain F, Crystal Structure Of The P107v-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SWS|D Chain D, Crystal Structure Of The Quinone Form Of Methylamine
Dehydrogenase In Complex With The Diferric Form Of Maug
pdb|3SWS|F Chain F, Crystal Structure Of The Quinone Form Of Methylamine
Dehydrogenase In Complex With The Diferric Form Of Maug
pdb|3SXT|D Chain D, Crystal Structure Of The Quinol Form Of Methylamine
Dehydrogenase In Complex With The Diferrous Form Of Maug
pdb|3SXT|F Chain F, Crystal Structure Of The Quinol Form Of Methylamine
Dehydrogenase In Complex With The Diferrous Form Of Maug
Length = 386
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 15 FHPTDEELVNHYLCRKCAGL---PISVPIIAEIDLYKYDPWELPEMARYGEKE 64
FHP DE L+NH + AG P I +IDL D LP + E E
Sbjct: 220 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272
>pdb|2MTA|H Chain H, Crystal Structure Of A Ternary Electron Transfer Complex
Between Methylamine Dehydrogenase, Amicyanin And A
C-Type Cytochrome
Length = 373
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 15 FHPTDEELVNHYLCRKCAG---LPISVPIIAEIDLYKYDPWELPEMARYGEKE 64
FHP DE L+NH + AG P I +IDL D LP + E E
Sbjct: 207 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 259
>pdb|2BBK|H Chain H, Crystal Structure Of The Quinoprotein Methylamine
Dehydrogenase From Paracoccus Denitrificans At 1.75
Angstroms
pdb|2BBK|J Chain J, Crystal Structure Of The Quinoprotein Methylamine
Dehydrogenase From Paracoccus Denitrificans At 1.75
Angstroms
Length = 355
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 15 FHPTDEELVNHYLCRKCAG---LPISVPIIAEIDLYKYDPWELPEMARYGEKE 64
FHP DE L+NH + AG P I +IDL D LP + E E
Sbjct: 189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241
>pdb|3PXW|D Chain D, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3PXW|F Chain F, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3SLE|D Chain D, Crystal Structure Of The P107c-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SLE|F Chain F, Crystal Structure Of The P107c-MaugPRE-Methylamine
Dehydrogenase Complex
Length = 385
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 15 FHPTDEELVNHYLCRKCAG---LPISVPIIAEIDLYKYDPWELPEMARYGEKE 64
FHP DE L+NH + AG P I +IDL D LP + E E
Sbjct: 219 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,774,107
Number of Sequences: 62578
Number of extensions: 510546
Number of successful extensions: 744
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 14
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)