Query 021910
Match_columns 305
No_of_seqs 183 out of 994
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.8E-57 2.3E-61 397.0 14.7 161 4-164 10-173 (174)
2 1ut7_A No apical meristem prot 100.0 8.1E-56 2.8E-60 389.1 12.8 157 5-164 13-170 (171)
3 1ldd_A APC2WHB, anaphase promo 16.4 68 0.0023 23.9 2.0 27 10-37 37-64 (74)
4 4dox_A Coat protein; all helix 15.2 76 0.0026 28.5 2.3 28 4-31 150-177 (226)
5 1cmb_A Met APO-repressor; DNA- 14.5 1.5E+02 0.0053 23.1 3.6 39 16-58 50-88 (104)
6 3nr5_A MAF1, repressor of RNA 9.8 54 0.0018 28.1 -0.4 13 41-53 119-131 (164)
7 3g21_A GAG polyprotein, capsid 9.3 1.3E+02 0.0044 22.8 1.6 14 16-29 63-76 (77)
8 3cpr_A Dihydrodipicolinate syn 9.2 1.1E+02 0.0037 27.9 1.4 18 8-26 117-134 (304)
9 3fkr_A L-2-keto-3-deoxyarabona 9.0 1.5E+02 0.0051 27.1 2.2 20 7-27 108-130 (309)
10 1f6k_A N-acetylneuraminate lya 8.6 1.3E+02 0.0043 27.2 1.5 18 9-27 106-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.8e-57 Score=396.99 Aligned_cols=161 Identities=76% Similarity=1.401 Sum_probs=136.6
Q ss_pred CCCCCCCCceeeCCChHHHHHHHHHHhhcCCCCCCCceeeccCCCCCCCCCccccccCCeeEEEecccCCCCCCCCCCce
Q 021910 4 GAELELPPGFRFHPTDEELVNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMARYGEKEWYFFSPRDRKYPNGSRPNR 83 (305)
Q Consensus 4 ~~~~~LPpGfRF~PTDeELV~~YL~~Ki~G~pl~~~iI~evDVY~~ePwdLP~~~~~ge~eWYFFspr~rk~~~G~R~~R 83 (305)
.+++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..++++|||||++++|+++|+|++|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 56789999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred ecCCCeEEecccccccC-CCcceeEEEEEEeecCCCCCCCccCeEEEEEeeCCCCCCC--cccCCCCCCCEEEEEEEeeC
Q 021910 84 AAGSGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSP--ATKNNLRLDDWVLCRLYNKK 160 (305)
Q Consensus 84 aaGgG~WK~tG~~k~V~-~gk~vG~KktL~Fy~gk~p~g~KT~WiMhEY~L~~~~~s~--~~~~~~~~dd~VLCRIy~Kk 160 (305)
++++||||++|++++|. .+++||+||+|+||.|+++++.||+|+||||+|.+..... .+.+....++|||||||+|+
T Consensus 90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp EETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred ecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 99999999999999995 4789999999999999999999999999999999765432 11223467899999999998
Q ss_pred CCCC
Q 021910 161 GRME 164 (305)
Q Consensus 161 ~~~e 164 (305)
+.-+
T Consensus 170 ~~~~ 173 (174)
T 3ulx_A 170 NEWE 173 (174)
T ss_dssp C---
T ss_pred CCcC
Confidence 7544
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8.1e-56 Score=389.11 Aligned_cols=157 Identities=69% Similarity=1.263 Sum_probs=131.2
Q ss_pred CCCCCCCceeeCCChHHHHHHHHHHhhcCCCCCCCceeeccCCCCCCCCCccccccCCeeEEEecccCCCCCCCCCCcee
Q 021910 5 AELELPPGFRFHPTDEELVNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMARYGEKEWYFFSPRDRKYPNGSRPNRA 84 (305)
Q Consensus 5 ~~~~LPpGfRF~PTDeELV~~YL~~Ki~G~pl~~~iI~evDVY~~ePwdLP~~~~~ge~eWYFFspr~rk~~~G~R~~Ra 84 (305)
.++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..++++|||||++++|+++|.|++|+
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEE
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccccc
Confidence 46899999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cCCCeEEecccccccC-CCcceeEEEEEEeecCCCCCCCccCeEEEEEeeCCCCCCCcccCCCCCCCEEEEEEEeeCCCC
Q 021910 85 AGSGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNKKGRM 163 (305)
Q Consensus 85 aGgG~WK~tG~~k~V~-~gk~vG~KktL~Fy~gk~p~g~KT~WiMhEY~L~~~~~s~~~~~~~~~dd~VLCRIy~Kk~~~ 163 (305)
+++||||++|++++|. .+++||+|++|+||.++++++.||+|+||||+|.+... +.+....++|||||||+|++..
T Consensus 93 t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~---~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---RNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEEEEEEEECC---
T ss_pred CCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc---ccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999984 46899999999999999999999999999999987542 1123456899999999998764
Q ss_pred C
Q 021910 164 E 164 (305)
Q Consensus 164 e 164 (305)
+
T Consensus 170 ~ 170 (171)
T 1ut7_A 170 Q 170 (171)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.40 E-value=68 Score=23.94 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCceeeCC-ChHHHHHHHHHHhhcCCCCC
Q 021910 10 PPGFRFHP-TDEELVNHYLCRKCAGLPIS 37 (305)
Q Consensus 10 PpGfRF~P-TDeELV~~YL~~Ki~G~pl~ 37 (305)
|.|+.|.. |++||-. ||.+++...-+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67889998 8899888 899999876543
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=15.22 E-value=76 Score=28.54 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=20.0
Q ss_pred CCCCCCCCceeeCCChHHHHHHHHHHhh
Q 021910 4 GAELELPPGFRFHPTDEELVNHYLCRKC 31 (305)
Q Consensus 4 ~~~~~LPpGfRF~PTDeELV~~YL~~Ki 31 (305)
...++-+-|..+.||++|+|.|=..+++
T Consensus 150 ~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 150 PAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4455666699999999999998655544
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=14.50 E-value=1.5e+02 Score=23.14 Aligned_cols=39 Identities=33% Similarity=0.433 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCCceeeccCCCCCCCCCcccc
Q 021910 16 HPTDEELVNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMA 58 (305)
Q Consensus 16 ~PTDeELV~~YL~~Ki~G~pl~~~iI~evDVY~~ePwdLP~~~ 58 (305)
|-|..||+.--...-..|+|||.+ .|+-+..|.++|+.+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 568888888777788899999864 588899999999753
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.76 E-value=54 Score=28.12 Aligned_cols=13 Identities=46% Similarity=0.838 Sum_probs=11.0
Q ss_pred eeeccCCCCCCCC
Q 021910 41 IAEIDLYKYDPWE 53 (305)
Q Consensus 41 I~evDVY~~ePwd 53 (305)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 6778999999983
No 7
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=9.32 E-value=1.3e+02 Score=22.76 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=10.9
Q ss_pred CCChHHHHHHHHHH
Q 021910 16 HPTDEELVNHYLCR 29 (305)
Q Consensus 16 ~PTDeELV~~YL~~ 29 (305)
-|+.||||.|.|.+
T Consensus 63 ~~~~~e~ik~~~~~ 76 (77)
T 3g21_A 63 LTTPGEIIKYVLDR 76 (77)
T ss_dssp CCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcc
Confidence 37889999977654
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.20 E-value=1.1e+02 Score=27.90 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=14.5
Q ss_pred CCCCceeeCCChHHHHHHH
Q 021910 8 ELPPGFRFHPTDEELVNHY 26 (305)
Q Consensus 8 ~LPpGfRF~PTDeELV~~Y 26 (305)
-+|| |.+.||+++|+.||
T Consensus 117 v~~P-~y~~~~~~~l~~~f 134 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHF 134 (304)
T ss_dssp EECC-CSSCCCHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHH
Confidence 3566 55889999999987
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=9.01 E-value=1.5e+02 Score=27.08 Aligned_cols=20 Identities=20% Similarity=0.785 Sum_probs=15.2
Q ss_pred CCCCCcee---eCCChHHHHHHHH
Q 021910 7 LELPPGFR---FHPTDEELVNHYL 27 (305)
Q Consensus 7 ~~LPpGfR---F~PTDeELV~~YL 27 (305)
+-+|| |. |.||+++|+.||-
T Consensus 108 lv~~P-yy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 108 MAMPP-YHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EECCS-CBTTTBCCCHHHHHHHHH
T ss_pred EEcCC-CCccCCCCCHHHHHHHHH
Confidence 34566 44 7999999999873
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=8.62 E-value=1.3e+02 Score=27.21 Aligned_cols=18 Identities=22% Similarity=0.382 Sum_probs=14.2
Q ss_pred CCCceeeCCChHHHHHHHH
Q 021910 9 LPPGFRFHPTDEELVNHYL 27 (305)
Q Consensus 9 LPpGfRF~PTDeELV~~YL 27 (305)
+|| |.|.||+++|+.||-
T Consensus 106 ~~P-~y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYD 123 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 458899999999873
Done!