BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021911
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/230 (78%), Positives = 201/230 (87%), Gaps = 1/230 (0%)
Query: 69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
V VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ D K+EYR WNPFRSKL
Sbjct: 4 VXVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGD-DKIEYRAWNPFRSKL 62
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 63 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 122
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248
KKRTN+IP+IEDARHP KYR L+ VDVIF+DVAQPDQ RI+ALNA FL+ GGHFVISI
Sbjct: 123 KKRTNIIPVIEDARHPHKYRXLIAXVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182
Query: 249 KANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298
KANCIDST AEAVF SEVKK QQ+ KP EQ+TLEP+ERDHA VVG YR
Sbjct: 183 KANCIDSTASAEAVFASEVKKXQQENXKPQEQLTLEPYERDHAVVVGVYR 232
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 153/228 (67%), Gaps = 8/228 (3%)
Query: 69 VVVEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
V V+ H+ GV++ + + + TKNLV G+ VY E+ I + E EYRIWNP RS
Sbjct: 2 VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KL AA++ G+ N IKPG VLYLG ASGTT SHVSDIVG G +Y +EFS R R+LV
Sbjct: 57 KLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVP 116
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+ ++R N+IPI+ DA P +YR LV VDVIF DVAQP QA+IL NA +LK GG+ +I
Sbjct: 117 IVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMI 176
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 294
++K+ ID T E VF+ EV++L + F+ E++ LEP+E+DHA V
Sbjct: 177 AVKSRSIDVTKEPEQVFK-EVERLLSEYFEVIERLNLEPYEKDHALFV 223
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 152/228 (66%), Gaps = 8/228 (3%)
Query: 69 VVVEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
V V+ H+ GV++ + + + TKNLV G+ VY E+ I + E EYRIWNP RS
Sbjct: 9 VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 63
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KL AA++ G+ N IKPG VLYLG ASGTT SHVSDIVG G +Y +EFS R R+LV
Sbjct: 64 KLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVP 123
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+ ++R N+IPI+ DA P +YR LV VDVIF DVAQP QA+IL NA +LK GG+ +I
Sbjct: 124 IVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMI 183
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 294
++K+ ID T E VF+ EV++ + F+ E++ LEP+E+DHA V
Sbjct: 184 AVKSRSIDVTKEPEQVFK-EVERELSEYFEVIERLNLEPYEKDHALFV 230
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 151/228 (66%), Gaps = 8/228 (3%)
Query: 69 VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
V V+ H+ GV+ I + + TKNLV G+ VY E+ I + E EYRIWNP RS
Sbjct: 2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRS 56
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KL AA++ G+ N IKPG VLYLG ASGTT SHVSDIVG G ++ +EFS R R+LV
Sbjct: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP 116
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246
+ ++R N++PI+ DA P +YR LV VDVIF DVAQP QA+IL NA +LK GG+ +I
Sbjct: 117 IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMI 176
Query: 247 SIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 294
++K+ ID T E VF+ EV++ + F+ E++ LEP+E+DHA V
Sbjct: 177 AVKSRSIDVTKEPEQVFR-EVERELSEYFEVIERLNLEPYEKDHALFV 223
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 149/229 (65%), Gaps = 10/229 (4%)
Query: 70 VVEPHRHE---GVFIAKGKEDAL--VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPF 124
VV RH+ GV++ + ++ +L TKNLV G+ VY E+ E EYR WN +
Sbjct: 4 VVSVSRHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGE-----EYREWNAY 58
Query: 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL 184
RSKLAAA+L G+ + +K G R+LYLG ASGTT SH+SDI+GP G +Y VEF+ R RDL
Sbjct: 59 RSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDL 118
Query: 185 VNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHF 244
+ + + R N+ PI+ DAR P KYR LV VD +++DVAQP+QA I+ NA +FL+ GG+
Sbjct: 119 LTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM 178
Query: 245 VISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACV 293
+++IKA ID T V++ E+K L + + V L+PF+RDHA +
Sbjct: 179 LMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMI 227
>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|F Chain F, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID6|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
pdb|3PLA|E Chain E, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|F Chain F, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|M Chain M, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 232
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 138/210 (65%), Gaps = 5/210 (2%)
Query: 89 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVL 148
L T+NLV VY E+ I + VEYR WN FRSKLA A+L G+ I+ G +VL
Sbjct: 27 LCTRNLVPNFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVL 81
Query: 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208
YLGAASGTT+SHVSDI+ NG Y VEFS R R+L+ +A++R N+ P++ DAR P Y+
Sbjct: 82 YLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYK 141
Query: 209 MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVK 268
+V VDV++ D+AQPDQ I NA +FLK G ++ IKA ID T + ++++EV+
Sbjct: 142 SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVE 201
Query: 269 KLQQDQFKPFEQVTLEPFERDHACVVGGYR 298
KL+ F+ + + L+P+++DHA V+ Y+
Sbjct: 202 KLENSNFETIQIINLDPYDKDHAIVLSKYK 231
>pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing
Protein
Length = 230
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 143/207 (69%), Gaps = 6/207 (2%)
Query: 89 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVL 148
+ TK++V G+ VY+EK I + +E EYRIWNP +SKLAAA++ G+ + IK +++L
Sbjct: 25 IATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKIL 79
Query: 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208
YLGA++GTT SHV+DI G+VYA+E++ R R+L++ +R N+IPI+ DA P +Y
Sbjct: 80 YLGASAGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA 138
Query: 209 MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVK 268
+V VDVI+ DVAQP+QA IL NA +FLK GG+ +I+IKA ID T + +F+ + +
Sbjct: 139 NIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE 198
Query: 269 KLQQDQFKPFEQVTLEPFERDHACVVG 295
L+ FK ++V +EPFE+DH VG
Sbjct: 199 ILEAGGFKIVDEVDIEPFEKDHVMFVG 225
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 141/207 (68%), Gaps = 6/207 (2%)
Query: 89 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVL 148
+ TK++V G+ VY+EK I + +E EYRIWNP +SKLAAA++ G+ IK +++L
Sbjct: 25 IATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVXPIKRDSKIL 79
Query: 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208
YLGA++GTT SHV+DI G+VYA+E++ R R+L++ +R N+IPI+ DA P +Y
Sbjct: 80 YLGASAGTTPSHVADI-ADKGIVYAIEYAPRIXRELLDACAERENIIPILGDANKPQEYA 138
Query: 209 MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVK 268
+V VDVI+ DVAQP+QA IL NA +FLK GG+ I+IKA ID T + +F+ + +
Sbjct: 139 NIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGXIAIKARSIDVTKDPKEIFKEQKE 198
Query: 269 KLQQDQFKPFEQVTLEPFERDHACVVG 295
L+ FK ++V +EPFE+DH VG
Sbjct: 199 ILEAGGFKIVDEVDIEPFEKDHVXFVG 225
>pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 210
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 86 EDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145
+D LVTK+ Y EK DG YR W P+RSKLAA +L G + ++
Sbjct: 12 DDTLVTKSKYGSH--YGEKVF-----DG----YREWVPWRSKLAAMILKG-HRLKLRGDE 59
Query: 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205
RVLYLGAASGTTVSH++DIV G++YAVE+S + L+ + ++R N+IP++ DA P
Sbjct: 60 RVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPW 118
Query: 206 KYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQS 265
KY +V VD+I+ D+AQ +Q IL NA +FLK G VI +KA IDST E VF+S
Sbjct: 119 KYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKS 178
Query: 266 EVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299
+K+++ D FK + +L P+ RDH + YR
Sbjct: 179 VLKEMEGD-FKIVKHGSLMPYHRDH-IFIHAYRF 210
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTV 158
+ +NE +I VQ E S +A+ VL KPG V+ L AA G
Sbjct: 234 SAFNEGKIIVQEE-------------ASAVASIVLDP------KPGETVVDLAAAPGGKT 274
Query: 159 SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR 202
+H+++++ G +YA + + L + K+ V P+++DAR
Sbjct: 275 THLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDAR 320
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV----EFSHRSGRDLVNMAKKRTNVIP 196
+KPG +VL +G G + ++IVG +G+V ++ E + ++ R L + NVI
Sbjct: 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG--YDNVIV 132
Query: 197 IIEDA 201
I+ D
Sbjct: 133 IVGDG 137
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN 193
+K G VL +G +G + ++S +VG G VYA++ ++VN A ++ N
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQE----EMVNYAWEKVN 83
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT------NV 194
+ G RVL +G +G + +S +VG G+V +VE+S R + +AK+ NV
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS----RKICEIAKRNVERLGIENV 128
Query: 195 IPIIEDARH 203
I + D +
Sbjct: 129 IFVCGDGYY 137
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KPG RVL L AA G +H++ +G G++ A E + R L+
Sbjct: 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KPG RVL L AA G +H++ +G G++ A E + R L+
Sbjct: 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
KPG RVL L AA G +H++ G G++ A E + R L+
Sbjct: 100 KPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVDGKRVRGLLE 144
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED 200
I PG ++ G SG +++IVGP G V + E D +A + N+ D
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE----DFAKLAWE--NIKWAGFD 144
Query: 201 ARHPAKYR-MLVGM----VDVIFSDVAQPDQARILALNASYFLKAGGHFV 245
R K + + G+ VD + D+ QP++ + +A+ LK GG FV
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLPQPER---VVEHAAKALKPGGFFV 191
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED 200
I PG ++ G SG +++IVGP G V + E D +A + N+ D
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE----DFAKLAWE--NIKWAGFD 144
Query: 201 ARHPAKYR-MLVGM----VDVIFSDVAQPDQARILALNASYFLKAGGHFV 245
R K + + G+ VD + D+ QP++ + +A+ LK GG FV
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLPQPER---VVEHAAKALKPGGFFV 191
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVE 175
I PGARVL GA SG + VGP G V + E
Sbjct: 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYE 131
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 114 TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASG 155
++ E+RI NPF ++ A LG V + KPG R+L LG+ SG
Sbjct: 10 SESEHRIHNPF-TEEKYATLGRV--LRXKPGTRILDLGSGSG 48
>pdb|4DVQ|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4FDH|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
Length = 483
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 160 HVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219
H ++ V Y H+ G L+N + R N + + D P + + MVD +
Sbjct: 81 HPCRMILEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRLNPDVLSPKAVQRFLPMVDAVAR 140
Query: 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPA 259
D +Q + ++L A G + ++ + T+ A
Sbjct: 141 DFSQALKKKVLQ-------NARGSLTLDVQPSIFHYTIEA 173
>pdb|4GIC|A Chain A, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
pdb|4GIC|B Chain B, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
Length = 423
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174
LAAA + GVD ++ GA+ + A TV V IVGP + A
Sbjct: 179 LAAAYISGVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVAT 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,155,573
Number of Sequences: 62578
Number of extensions: 275618
Number of successful extensions: 729
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 29
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)