Query 021911
Match_columns 305
No_of_seqs 397 out of 2984
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1596 Fibrillarin and relate 100.0 5.2E-74 1.1E-78 490.6 27.8 244 60-304 74-317 (317)
2 PTZ00146 fibrillarin; Provisio 100.0 7.6E-62 1.6E-66 437.5 32.6 237 67-303 55-292 (293)
3 PF01269 Fibrillarin: Fibrilla 100.0 3.6E-55 7.9E-60 375.4 23.5 228 71-299 1-229 (229)
4 COG1889 NOP1 Fibrillarin-like 100.0 8.1E-51 1.7E-55 340.6 23.6 226 67-298 2-230 (231)
5 PRK04266 fibrillarin; Provisio 100.0 3.1E-34 6.8E-39 252.9 24.2 221 72-298 4-226 (226)
6 COG0144 Sun tRNA and rRNA cyto 99.9 3.2E-21 7E-26 180.9 18.6 146 95-262 127-300 (355)
7 PRK14901 16S rRNA methyltransf 99.9 2.6E-20 5.7E-25 179.6 18.0 202 73-300 196-433 (434)
8 PRK14903 16S rRNA methyltransf 99.8 5.3E-20 1.2E-24 177.0 18.4 167 72-262 180-378 (431)
9 PRK11933 yebU rRNA (cytosine-C 99.8 4.7E-20 1E-24 178.0 16.1 146 95-262 82-254 (470)
10 TIGR00446 nop2p NOL1/NOP2/sun 99.8 2.5E-20 5.3E-25 168.6 13.3 143 95-262 42-211 (264)
11 PRK14902 16S rRNA methyltransf 99.8 1.2E-18 2.7E-23 168.6 19.0 164 74-261 197-390 (444)
12 PRK14904 16S rRNA methyltransf 99.8 2.9E-18 6.4E-23 165.9 18.6 139 98-262 224-389 (445)
13 TIGR00563 rsmB ribosomal RNA s 99.8 3.1E-18 6.8E-23 164.9 18.6 167 72-262 182-380 (426)
14 PRK10901 16S rRNA methyltransf 99.8 2.3E-17 5E-22 158.9 20.9 144 95-262 215-384 (427)
15 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.8 8.3E-19 1.8E-23 159.9 9.5 169 71-262 26-231 (283)
16 KOG1122 tRNA and rRNA cytosine 99.7 1.3E-17 2.8E-22 154.4 10.7 145 95-262 212-383 (460)
17 TIGR02752 MenG_heptapren 2-hep 99.6 1.2E-14 2.5E-19 128.6 17.7 105 140-248 42-151 (231)
18 COG2226 UbiE Methylase involve 99.6 1.3E-15 2.9E-20 134.4 10.8 100 140-248 48-156 (238)
19 PF01209 Ubie_methyltran: ubiE 99.6 2.7E-15 5.9E-20 133.1 11.2 105 140-248 44-153 (233)
20 PLN02233 ubiquinone biosynthes 99.6 5.9E-14 1.3E-18 126.8 17.5 106 140-249 70-183 (261)
21 PF12847 Methyltransf_18: Meth 99.6 1.5E-14 3.3E-19 113.1 11.0 100 143-248 1-111 (112)
22 COG4123 Predicted O-methyltran 99.6 8.1E-14 1.8E-18 123.3 16.8 143 140-295 41-209 (248)
23 PRK00107 gidB 16S rRNA methylt 99.6 2.2E-13 4.8E-18 116.9 17.3 138 141-296 43-185 (187)
24 PTZ00098 phosphoethanolamine N 99.6 1.3E-13 2.8E-18 124.7 16.4 142 139-286 48-206 (263)
25 PF08704 GCD14: tRNA methyltra 99.6 7.9E-14 1.7E-18 124.2 14.7 132 140-283 37-172 (247)
26 PLN02244 tocopherol O-methyltr 99.6 1.5E-13 3.2E-18 128.8 16.7 139 142-286 117-282 (340)
27 TIGR00138 gidB 16S rRNA methyl 99.6 2.3E-13 4.9E-18 116.4 16.1 127 143-283 42-170 (181)
28 PF05175 MTS: Methyltransferas 99.5 4.2E-14 9E-19 119.7 10.9 102 141-248 29-140 (170)
29 KOG2198 tRNA cytosine-5-methyl 99.5 6.3E-14 1.4E-18 128.8 12.4 127 140-270 152-315 (375)
30 PRK00377 cbiT cobalt-precorrin 99.5 2.8E-13 6E-18 117.4 15.8 127 139-277 36-165 (198)
31 PF13847 Methyltransf_31: Meth 99.5 1.1E-13 2.3E-18 114.8 12.6 104 142-248 2-110 (152)
32 PRK00121 trmB tRNA (guanine-N( 99.5 9E-14 1.9E-18 120.9 12.0 125 142-278 39-177 (202)
33 PRK08287 cobalt-precorrin-6Y C 99.5 5.4E-13 1.2E-17 114.5 16.0 125 140-280 28-154 (187)
34 PRK14103 trans-aconitate 2-met 99.5 7.4E-14 1.6E-18 125.6 10.9 111 125-249 14-127 (255)
35 COG2230 Cfa Cyclopropane fatty 99.5 3.1E-13 6.8E-18 121.6 14.0 134 90-248 35-176 (283)
36 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.1E-12 2.3E-17 122.2 17.6 137 142-287 112-261 (340)
37 PRK11188 rrmJ 23S rRNA methylt 99.5 3.9E-13 8.3E-18 117.6 13.6 114 125-248 32-165 (209)
38 TIGR02469 CbiT precorrin-6Y C5 99.5 5E-13 1.1E-17 106.0 13.1 105 140-248 16-122 (124)
39 COG2242 CobL Precorrin-6B meth 99.5 1.1E-12 2.4E-17 110.6 15.7 130 136-280 27-159 (187)
40 TIGR03704 PrmC_rel_meth putati 99.5 1.6E-12 3.4E-17 116.8 17.7 165 95-281 46-239 (251)
41 PRK11873 arsM arsenite S-adeno 99.5 1.3E-12 2.7E-17 118.7 16.6 137 140-282 74-230 (272)
42 PRK01683 trans-aconitate 2-met 99.5 2.4E-13 5.2E-18 122.3 11.3 109 127-248 18-130 (258)
43 COG2519 GCD14 tRNA(1-methylade 99.5 7.4E-13 1.6E-17 116.5 13.9 126 140-281 91-219 (256)
44 PF02353 CMAS: Mycolic acid cy 99.5 5.7E-13 1.2E-17 120.9 13.6 104 136-248 55-166 (273)
45 TIGR00091 tRNA (guanine-N(7)-) 99.5 4.4E-13 9.4E-18 115.9 11.9 127 142-279 15-155 (194)
46 PF05401 NodS: Nodulation prot 99.5 1.8E-12 3.8E-17 110.4 14.9 151 141-303 41-200 (201)
47 PRK13168 rumA 23S rRNA m(5)U19 99.5 1.4E-12 3.1E-17 126.4 16.2 148 126-291 283-433 (443)
48 TIGR00080 pimt protein-L-isoas 99.5 7.3E-13 1.6E-17 116.2 12.7 111 128-248 65-177 (215)
49 PRK14966 unknown domain/N5-glu 99.4 7.4E-12 1.6E-16 118.6 18.9 155 123-298 236-419 (423)
50 PRK13942 protein-L-isoaspartat 99.4 1.5E-12 3.3E-17 114.0 13.0 112 127-248 63-176 (212)
51 PF08241 Methyltransf_11: Meth 99.4 5.7E-13 1.2E-17 100.3 8.6 92 148-246 1-95 (95)
52 TIGR00537 hemK_rel_arch HemK-r 99.4 8.9E-12 1.9E-16 106.2 16.7 128 141-286 17-169 (179)
53 PLN02336 phosphoethanolamine N 99.4 4.6E-12 1E-16 123.8 16.8 137 140-282 263-414 (475)
54 PRK08317 hypothetical protein; 99.4 9.1E-12 2E-16 109.8 17.1 105 140-248 16-124 (241)
55 PRK11207 tellurite resistance 99.4 4.2E-12 9.2E-17 110.0 14.4 100 141-248 28-134 (197)
56 PRK10258 biotin biosynthesis p 99.4 1.1E-12 2.5E-17 117.5 11.2 109 127-249 29-141 (251)
57 PRK13944 protein-L-isoaspartat 99.4 3.2E-12 7E-17 111.4 13.4 102 140-248 69-173 (205)
58 PF13659 Methyltransf_26: Meth 99.4 6.2E-13 1.3E-17 104.9 8.0 101 144-248 1-115 (117)
59 PRK14967 putative methyltransf 99.4 5E-12 1.1E-16 111.6 14.5 102 140-248 33-159 (223)
60 TIGR00438 rrmJ cell division p 99.4 5.9E-12 1.3E-16 108.1 14.5 99 140-248 29-146 (188)
61 PRK11036 putative S-adenosyl-L 99.4 3.1E-12 6.7E-17 115.1 13.4 101 142-248 43-149 (255)
62 COG4106 Tam Trans-aconitate me 99.4 2.9E-13 6.4E-18 115.7 6.2 115 125-252 15-133 (257)
63 PRK15001 SAM-dependent 23S rib 99.4 9.4E-12 2E-16 117.5 16.7 103 140-248 225-340 (378)
64 PF01135 PCMT: Protein-L-isoas 99.4 9.6E-13 2.1E-17 114.8 9.2 112 127-248 59-172 (209)
65 TIGR03534 RF_mod_PrmC protein- 99.4 1.4E-11 3.1E-16 109.9 17.1 140 122-281 70-240 (251)
66 PF03848 TehB: Tellurite resis 99.4 3.2E-12 6.9E-17 109.6 11.9 100 142-249 29-134 (192)
67 PRK15068 tRNA mo(5)U34 methylt 99.4 1E-11 2.2E-16 115.5 16.0 136 141-285 120-277 (322)
68 PRK09328 N5-glutamine S-adenos 99.4 3.3E-11 7.2E-16 109.2 19.0 151 122-292 90-271 (275)
69 PRK00517 prmA ribosomal protei 99.4 1.7E-11 3.7E-16 110.1 16.8 133 141-297 117-249 (250)
70 PLN02396 hexaprenyldihydroxybe 99.4 7.8E-12 1.7E-16 115.9 15.0 101 142-249 130-236 (322)
71 PRK15451 tRNA cmo(5)U34 methyl 99.4 4.8E-12 1E-16 113.4 13.1 103 141-249 54-165 (247)
72 TIGR00452 methyltransferase, p 99.4 1E-11 2.3E-16 114.6 15.5 137 140-285 118-276 (314)
73 PRK07402 precorrin-6B methylas 99.4 1.2E-11 2.5E-16 107.0 14.3 130 140-280 37-168 (196)
74 TIGR00740 methyltransferase, p 99.4 1.7E-11 3.6E-16 109.2 15.5 102 141-248 51-161 (239)
75 TIGR02072 BioC biotin biosynth 99.4 3.9E-12 8.4E-17 112.3 10.5 116 125-249 16-136 (240)
76 TIGR03533 L3_gln_methyl protei 99.4 3.5E-11 7.7E-16 110.0 16.7 101 142-248 120-251 (284)
77 KOG1540 Ubiquinone biosynthesi 99.4 8.1E-12 1.8E-16 109.4 11.8 106 139-248 96-214 (296)
78 PRK14968 putative methyltransf 99.4 6.5E-11 1.4E-15 100.9 17.3 124 141-281 21-172 (188)
79 COG2518 Pcm Protein-L-isoaspar 99.3 5.3E-12 1.2E-16 108.7 10.2 105 127-248 59-169 (209)
80 TIGR00406 prmA ribosomal prote 99.3 3.6E-11 7.8E-16 110.2 16.3 125 141-283 157-284 (288)
81 PRK00216 ubiE ubiquinone/menaq 99.3 5E-11 1.1E-15 105.3 16.7 105 140-248 48-158 (239)
82 TIGR00536 hemK_fam HemK family 99.3 7.4E-11 1.6E-15 107.9 18.1 117 124-248 97-244 (284)
83 COG2264 PrmA Ribosomal protein 99.3 2.3E-11 4.9E-16 110.5 14.4 139 141-297 160-299 (300)
84 smart00828 PKS_MT Methyltransf 99.3 2.3E-11 5.1E-16 107.0 14.2 136 145-286 1-148 (224)
85 TIGR00479 rumA 23S rRNA (uraci 99.3 1.1E-11 2.4E-16 119.7 13.2 137 140-291 289-429 (431)
86 TIGR00477 tehB tellurite resis 99.3 1.6E-11 3.5E-16 106.1 12.8 100 141-248 28-133 (195)
87 PF13649 Methyltransf_25: Meth 99.3 5.1E-12 1.1E-16 97.4 8.6 93 147-242 1-101 (101)
88 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.5E-11 3.2E-16 115.9 13.1 106 140-248 119-235 (390)
89 PF13489 Methyltransf_23: Meth 99.3 2.1E-11 4.5E-16 101.0 12.6 95 141-250 20-117 (161)
90 TIGR01177 conserved hypothetic 99.3 1.5E-11 3.3E-16 114.7 13.0 136 124-282 166-315 (329)
91 COG2813 RsmC 16S RNA G1207 met 99.3 4E-12 8.7E-17 114.8 8.7 105 137-248 152-266 (300)
92 COG2890 HemK Methylase of poly 99.3 1E-10 2.2E-15 106.6 18.1 115 123-248 94-238 (280)
93 PF06325 PrmA: Ribosomal prote 99.3 3.3E-11 7.2E-16 110.2 14.7 134 141-298 159-295 (295)
94 PRK15128 23S rRNA m(5)C1962 me 99.3 2.7E-11 5.9E-16 115.4 14.3 104 142-248 219-339 (396)
95 PRK03522 rumB 23S rRNA methylu 99.3 1.8E-11 3.9E-16 113.5 12.7 131 143-291 173-305 (315)
96 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 7.4E-11 1.6E-15 103.1 16.0 105 140-248 36-143 (223)
97 PRK09489 rsmC 16S ribosomal RN 99.3 8.4E-11 1.8E-15 110.1 16.8 100 142-248 195-303 (342)
98 COG0293 FtsJ 23S rRNA methylas 99.3 5.5E-11 1.2E-15 102.3 14.2 157 124-299 25-202 (205)
99 TIGR03840 TMPT_Se_Te thiopurin 99.3 7.2E-11 1.6E-15 103.5 14.8 135 141-280 32-185 (213)
100 PRK11088 rrmA 23S rRNA methylt 99.3 1.6E-11 3.4E-16 111.6 10.9 96 142-249 84-182 (272)
101 COG2227 UbiG 2-polyprenyl-3-me 99.3 1.1E-11 2.3E-16 108.4 9.1 98 142-250 58-163 (243)
102 PRK11705 cyclopropane fatty ac 99.3 5.2E-11 1.1E-15 113.2 14.7 102 137-248 161-267 (383)
103 PRK12335 tellurite resistance 99.3 4E-11 8.7E-16 109.8 13.2 97 144-248 121-223 (287)
104 PRK04457 spermidine synthase; 99.3 8.2E-11 1.8E-15 106.3 14.9 145 142-300 65-219 (262)
105 PRK01544 bifunctional N5-gluta 99.3 1.2E-10 2.7E-15 114.4 17.3 122 143-280 138-291 (506)
106 PRK11805 N5-glutamine S-adenos 99.3 7.9E-11 1.7E-15 108.8 13.9 98 145-248 135-263 (307)
107 TIGR02085 meth_trns_rumB 23S r 99.3 6.2E-11 1.3E-15 112.4 13.3 132 142-291 232-365 (374)
108 KOG2360 Proliferation-associat 99.3 2E-11 4.4E-16 112.4 9.2 147 92-262 181-356 (413)
109 PRK13255 thiopurine S-methyltr 99.3 1.5E-10 3.2E-15 101.8 14.3 138 140-282 34-190 (218)
110 COG2265 TrmA SAM-dependent met 99.3 5.9E-11 1.3E-15 113.9 12.8 148 127-291 280-429 (432)
111 PLN02336 phosphoethanolamine N 99.3 5.9E-11 1.3E-15 116.0 13.1 104 140-248 34-142 (475)
112 PRK00312 pcm protein-L-isoaspa 99.2 1.2E-10 2.6E-15 101.9 13.3 99 140-248 75-175 (212)
113 PRK13943 protein-L-isoaspartat 99.2 1E-10 2.2E-15 108.4 13.1 112 127-248 67-180 (322)
114 KOG2915 tRNA(1-methyladenosine 99.2 2.6E-10 5.6E-15 100.8 14.8 135 140-286 102-239 (314)
115 PLN03075 nicotianamine synthas 99.2 1.9E-10 4.1E-15 104.8 14.3 148 141-300 121-277 (296)
116 COG1092 Predicted SAM-dependen 99.2 1.4E-10 3.1E-15 109.4 13.8 139 144-291 218-374 (393)
117 PRK01581 speE spermidine synth 99.2 3.2E-10 7E-15 105.6 15.8 143 144-299 151-315 (374)
118 PF02390 Methyltransf_4: Putat 99.2 7E-11 1.5E-15 102.1 10.1 126 143-279 17-157 (195)
119 TIGR02716 C20_methyl_CrtF C-20 99.2 3.8E-10 8.2E-15 104.2 15.2 101 140-248 146-254 (306)
120 KOG1271 Methyltransferases [Ge 99.2 1.6E-10 3.4E-15 96.6 11.0 127 145-285 69-208 (227)
121 PLN02781 Probable caffeoyl-CoA 99.2 9.8E-11 2.1E-15 104.1 10.5 107 140-247 65-177 (234)
122 PRK03612 spermidine synthase; 99.2 2.4E-10 5.1E-15 112.9 14.1 144 142-298 296-460 (521)
123 PRK11783 rlmL 23S rRNA m(2)G24 99.2 2E-10 4.3E-15 117.2 13.9 124 143-281 538-679 (702)
124 KOG4589 Cell division protein 99.2 5.3E-10 1.1E-14 93.8 13.8 159 124-301 49-229 (232)
125 COG2521 Predicted archaeal met 99.2 1.2E-10 2.6E-15 100.8 10.3 133 140-281 131-276 (287)
126 PF10672 Methyltrans_SAM: S-ad 99.2 2E-10 4.4E-15 104.4 12.3 134 143-285 123-269 (286)
127 PRK06922 hypothetical protein; 99.2 1.8E-10 3.9E-15 114.1 12.4 105 141-248 416-537 (677)
128 PF08242 Methyltransf_12: Meth 99.2 2E-11 4.3E-16 93.6 4.3 90 148-244 1-99 (99)
129 PRK00811 spermidine synthase; 99.2 2.9E-09 6.2E-14 97.4 18.6 145 143-297 76-237 (283)
130 smart00138 MeTrc Methyltransfe 99.2 1.5E-10 3.2E-15 104.8 9.9 99 142-248 98-242 (264)
131 KOG1270 Methyltransferases [Co 99.2 6.6E-11 1.4E-15 104.3 6.8 97 144-250 90-197 (282)
132 PRK05031 tRNA (uracil-5-)-meth 99.1 4.5E-10 9.7E-15 106.1 12.8 129 145-291 208-352 (362)
133 PRK10909 rsmD 16S rRNA m(2)G96 99.1 4.6E-10 9.9E-15 97.3 11.7 121 122-248 34-159 (199)
134 PRK05134 bifunctional 3-demeth 99.1 1.6E-09 3.4E-14 96.0 15.1 104 140-249 45-152 (233)
135 TIGR03587 Pse_Me-ase pseudamin 99.1 1.4E-09 3.1E-14 94.7 14.6 97 140-248 40-142 (204)
136 PF01596 Methyltransf_3: O-met 99.1 9.6E-11 2.1E-15 101.9 7.2 119 126-247 30-154 (205)
137 PHA03411 putative methyltransf 99.1 7.1E-10 1.5E-14 99.7 12.8 124 141-278 62-210 (279)
138 TIGR02021 BchM-ChlM magnesium 99.1 7.4E-10 1.6E-14 97.3 12.6 97 141-247 53-157 (219)
139 PRK05785 hypothetical protein; 99.1 5.9E-10 1.3E-14 98.6 11.8 88 142-241 50-140 (226)
140 COG2520 Predicted methyltransf 99.1 5.6E-09 1.2E-13 96.8 18.5 137 98-248 143-289 (341)
141 TIGR03438 probable methyltrans 99.1 7.8E-10 1.7E-14 102.0 12.3 107 141-248 61-177 (301)
142 KOG4300 Predicted methyltransf 99.1 4.7E-10 1E-14 95.6 9.7 99 145-248 78-182 (252)
143 PLN02476 O-methyltransferase 99.1 6.9E-10 1.5E-14 100.5 11.0 107 140-247 115-227 (278)
144 PF05724 TPMT: Thiopurine S-me 99.1 9.6E-10 2.1E-14 96.6 11.6 137 140-281 34-189 (218)
145 PLN02366 spermidine synthase 99.1 6.8E-09 1.5E-13 95.8 17.7 148 142-298 90-254 (308)
146 COG4122 Predicted O-methyltran 99.1 7.6E-10 1.6E-14 96.6 10.7 106 140-247 56-165 (219)
147 PRK13256 thiopurine S-methyltr 99.1 3.2E-09 6.9E-14 93.5 14.7 136 140-278 40-193 (226)
148 PF05958 tRNA_U5-meth_tr: tRNA 99.1 1.5E-09 3.1E-14 102.3 13.2 144 127-291 184-342 (352)
149 KOG2904 Predicted methyltransf 99.1 1.5E-09 3.2E-14 96.3 12.3 126 122-248 127-285 (328)
150 PF01728 FtsJ: FtsJ-like methy 99.1 2.7E-10 5.8E-15 97.1 7.5 114 125-248 2-139 (181)
151 TIGR02143 trmA_only tRNA (urac 99.1 1.7E-09 3.7E-14 101.8 13.0 129 145-291 199-343 (353)
152 COG0220 Predicted S-adenosylme 99.1 1.4E-09 3.1E-14 95.8 11.3 102 145-248 50-164 (227)
153 TIGR01983 UbiG ubiquinone bios 99.1 3.7E-09 8E-14 92.9 14.0 100 143-248 45-149 (224)
154 smart00650 rADc Ribosomal RNA 99.1 2.6E-09 5.7E-14 90.1 12.3 102 140-248 10-113 (169)
155 PHA03412 putative methyltransf 99.1 1.4E-09 3E-14 95.8 10.8 92 143-243 49-158 (241)
156 PF07021 MetW: Methionine bios 99.0 2.9E-09 6.3E-14 90.6 12.2 136 140-287 10-172 (193)
157 TIGR00417 speE spermidine synt 99.0 1.6E-08 3.5E-13 91.8 17.7 144 144-297 73-232 (270)
158 KOG2361 Predicted methyltransf 99.0 2.5E-09 5.4E-14 93.3 11.4 98 146-248 74-183 (264)
159 PRK06202 hypothetical protein; 99.0 3.2E-09 6.8E-14 94.2 11.8 96 142-247 59-165 (232)
160 PLN02672 methionine S-methyltr 99.0 4.6E-09 1E-13 110.0 14.6 124 144-282 119-303 (1082)
161 PRK07580 Mg-protoporphyrin IX 99.0 1.3E-08 2.8E-13 89.7 15.5 94 141-244 61-162 (230)
162 cd02440 AdoMet_MTases S-adenos 99.0 5.2E-09 1.1E-13 78.6 11.0 97 146-247 1-103 (107)
163 PF08003 Methyltransf_9: Prote 99.0 3.5E-09 7.7E-14 95.9 11.6 135 142-285 114-270 (315)
164 PF02475 Met_10: Met-10+ like- 99.0 2.7E-09 5.8E-14 92.4 10.1 115 120-246 83-200 (200)
165 TIGR00478 tly hemolysin TlyA f 99.0 7.5E-09 1.6E-13 91.4 12.5 149 124-282 55-217 (228)
166 TIGR02081 metW methionine bios 99.0 8.4E-09 1.8E-13 89.0 12.6 95 141-247 11-108 (194)
167 TIGR00095 RNA methyltransferas 99.0 5.6E-09 1.2E-13 89.9 11.0 120 125-248 33-159 (189)
168 PF03602 Cons_hypoth95: Conser 99.0 1.1E-09 2.5E-14 93.6 6.6 123 122-248 22-153 (183)
169 COG1041 Predicted DNA modifica 99.0 9.6E-09 2.1E-13 94.7 13.1 124 140-284 194-332 (347)
170 COG2263 Predicted RNA methylas 98.9 4.5E-09 9.8E-14 88.7 9.1 88 127-222 29-117 (198)
171 KOG3191 Predicted N6-DNA-methy 98.9 2.3E-08 4.9E-13 83.8 12.6 126 143-281 43-192 (209)
172 COG0742 N6-adenine-specific me 98.9 1.6E-08 3.4E-13 85.9 11.8 124 122-248 23-154 (187)
173 PLN02589 caffeoyl-CoA O-methyl 98.9 8.2E-09 1.8E-13 92.2 10.1 106 141-247 77-189 (247)
174 PLN02823 spermine synthase 98.9 9.1E-08 2E-12 89.3 17.2 149 144-299 104-269 (336)
175 PF01170 UPF0020: Putative RNA 98.9 1.3E-08 2.8E-13 86.9 10.2 111 123-240 11-143 (179)
176 COG3963 Phospholipid N-methylt 98.9 2.1E-08 4.4E-13 82.9 10.9 119 122-248 30-156 (194)
177 PF03291 Pox_MCEL: mRNA cappin 98.9 2.8E-08 6.1E-13 92.6 12.6 123 123-249 44-187 (331)
178 PLN02585 magnesium protoporphy 98.9 6.7E-08 1.5E-12 89.5 14.6 94 143-248 144-249 (315)
179 PRK01544 bifunctional N5-gluta 98.8 2.8E-08 6.2E-13 97.8 12.1 125 142-278 346-484 (506)
180 KOG1661 Protein-L-isoaspartate 98.8 1.5E-08 3.3E-13 86.7 8.7 110 127-248 67-193 (237)
181 COG4976 Predicted methyltransf 98.8 2.3E-09 5.1E-14 92.7 3.8 135 140-283 122-266 (287)
182 KOG1975 mRNA cap methyltransfe 98.8 2.9E-08 6.3E-13 89.9 10.6 116 123-248 105-237 (389)
183 PRK04338 N(2),N(2)-dimethylgua 98.8 2.5E-08 5.5E-13 94.7 10.5 100 143-248 57-158 (382)
184 KOG3010 Methyltransferase [Gen 98.8 2.6E-08 5.6E-13 87.0 9.6 109 125-247 20-136 (261)
185 PF05148 Methyltransf_8: Hypot 98.8 7.2E-08 1.6E-12 83.0 12.1 115 141-283 70-186 (219)
186 PF06080 DUF938: Protein of un 98.8 1.1E-07 2.3E-12 82.1 13.1 151 141-295 23-202 (204)
187 COG1189 Predicted rRNA methyla 98.8 1.7E-07 3.6E-12 82.0 14.1 154 122-282 57-224 (245)
188 PRK00050 16S rRNA m(4)C1402 me 98.8 4.2E-08 9.1E-13 89.8 10.9 83 140-222 16-99 (296)
189 PF05219 DREV: DREV methyltran 98.8 1.7E-07 3.8E-12 83.2 13.9 92 143-248 94-188 (265)
190 COG4262 Predicted spermidine s 98.8 9.2E-08 2E-12 88.0 11.9 180 97-303 256-457 (508)
191 PF05185 PRMT5: PRMT5 arginine 98.7 5.8E-08 1.2E-12 94.0 9.9 97 144-245 187-294 (448)
192 PRK14896 ksgA 16S ribosomal RN 98.7 1.7E-07 3.7E-12 84.5 12.1 78 140-225 26-103 (258)
193 PRK00274 ksgA 16S ribosomal RN 98.7 2.3E-07 5.1E-12 84.3 12.3 95 127-231 29-123 (272)
194 PF02384 N6_Mtase: N-6 DNA Met 98.7 2.3E-07 4.9E-12 85.8 12.2 155 140-300 43-235 (311)
195 KOG1541 Predicted protein carb 98.7 7.7E-07 1.7E-11 76.9 13.8 149 126-294 34-201 (270)
196 KOG2187 tRNA uracil-5-methyltr 98.7 8.3E-08 1.8E-12 92.0 8.5 158 122-289 365-529 (534)
197 TIGR00755 ksgA dimethyladenosi 98.6 3.4E-07 7.4E-12 82.3 12.0 98 127-236 16-116 (253)
198 PF10294 Methyltransf_16: Puta 98.6 3.4E-07 7.4E-12 77.7 10.6 133 114-249 14-157 (173)
199 PRK11727 23S rRNA mA1618 methy 98.6 2E-06 4.3E-11 79.7 15.9 79 143-222 114-198 (321)
200 KOG1500 Protein arginine N-met 98.6 2.1E-07 4.4E-12 84.9 9.1 98 143-248 177-282 (517)
201 PF09445 Methyltransf_15: RNA 98.6 5.2E-08 1.1E-12 81.4 4.9 75 145-222 1-78 (163)
202 TIGR00308 TRM1 tRNA(guanine-26 98.6 2.4E-07 5.3E-12 87.6 9.8 100 144-247 45-146 (374)
203 PTZ00338 dimethyladenosine tra 98.6 3.6E-07 7.8E-12 83.9 10.5 84 140-231 33-119 (294)
204 KOG1663 O-methyltransferase [S 98.6 6.2E-07 1.3E-11 78.0 11.2 116 125-247 61-182 (237)
205 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 7.5E-07 1.6E-11 79.8 11.4 137 143-282 56-239 (256)
206 PRK11760 putative 23S rRNA C24 98.6 3.2E-06 7E-11 78.2 15.7 95 141-249 209-306 (357)
207 KOG2899 Predicted methyltransf 98.5 3.5E-07 7.6E-12 80.0 8.5 101 142-248 57-209 (288)
208 KOG3045 Predicted RNA methylas 98.5 1.1E-06 2.5E-11 77.5 11.5 110 142-281 179-290 (325)
209 PF01564 Spermine_synth: Sperm 98.5 3.7E-06 8E-11 75.3 15.2 147 143-299 76-239 (246)
210 PF00891 Methyltransf_2: O-met 98.5 2.3E-06 5.1E-11 76.1 13.7 98 139-248 96-199 (241)
211 COG0116 Predicted N6-adenine-s 98.5 9.9E-07 2.1E-11 82.6 10.8 128 115-248 163-344 (381)
212 KOG3420 Predicted RNA methylas 98.5 1.8E-07 4E-12 75.6 5.1 95 123-222 27-123 (185)
213 PF02527 GidB: rRNA small subu 98.5 3.9E-06 8.5E-11 71.8 13.6 124 146-283 51-176 (184)
214 PF12147 Methyltransf_20: Puta 98.5 5.9E-06 1.3E-10 74.5 14.6 105 143-248 135-249 (311)
215 COG0421 SpeE Spermidine syntha 98.5 3.8E-06 8.3E-11 76.5 13.4 100 140-248 74-190 (282)
216 PF11968 DUF3321: Putative met 98.4 4.3E-06 9.4E-11 72.4 12.2 120 145-283 53-182 (219)
217 COG4798 Predicted methyltransf 98.4 2.8E-06 6.1E-11 72.1 10.3 141 139-283 44-206 (238)
218 COG0030 KsgA Dimethyladenosine 98.4 2.7E-06 5.9E-11 76.2 10.7 87 140-231 27-113 (259)
219 PF01739 CheR: CheR methyltran 98.4 1.5E-06 3.3E-11 75.1 8.7 98 143-248 31-175 (196)
220 PRK11783 rlmL 23S rRNA m(2)G24 98.4 5E-06 1.1E-10 85.2 13.8 123 122-248 171-347 (702)
221 COG0357 GidB Predicted S-adeno 98.4 8.7E-06 1.9E-10 71.1 13.3 141 144-298 68-213 (215)
222 KOG1099 SAM-dependent methyltr 98.4 5.4E-07 1.2E-11 78.2 5.6 116 124-248 21-163 (294)
223 KOG1499 Protein arginine N-met 98.3 2E-06 4.3E-11 79.3 8.7 104 138-247 55-166 (346)
224 TIGR03439 methyl_EasF probable 98.3 7.1E-06 1.5E-10 76.0 12.0 108 140-248 73-197 (319)
225 PRK04148 hypothetical protein; 98.3 8E-06 1.7E-10 66.0 10.7 94 142-248 15-109 (134)
226 PRK00536 speE spermidine synth 98.3 2.1E-05 4.5E-10 70.9 14.2 135 140-298 70-216 (262)
227 PF00398 RrnaAD: Ribosomal RNA 98.3 1.2E-05 2.6E-10 72.7 12.5 103 127-236 17-119 (262)
228 PLN02232 ubiquinone biosynthes 98.3 2.2E-06 4.7E-11 71.7 7.1 69 172-248 1-81 (160)
229 PF08123 DOT1: Histone methyla 98.3 3.2E-06 7E-11 73.6 8.3 108 139-249 38-158 (205)
230 COG4076 Predicted RNA methylas 98.3 1.7E-06 3.8E-11 72.9 6.0 93 145-246 34-133 (252)
231 PF05891 Methyltransf_PK: AdoM 98.3 7.4E-06 1.6E-10 71.2 9.9 141 143-289 55-208 (218)
232 COG1352 CheR Methylase of chem 98.2 9.7E-06 2.1E-10 73.2 10.9 101 144-248 97-241 (268)
233 PF13578 Methyltransf_24: Meth 98.2 9.8E-07 2.1E-11 68.3 3.6 98 148-247 1-104 (106)
234 TIGR02987 met_A_Alw26 type II 98.2 1.1E-05 2.3E-10 80.1 11.1 80 143-222 31-121 (524)
235 KOG1098 Putative SAM-dependent 98.1 4.4E-06 9.5E-11 81.6 6.7 114 124-247 24-157 (780)
236 PF01861 DUF43: Protein of unk 98.1 8.4E-05 1.8E-09 65.6 13.1 138 143-288 44-185 (243)
237 cd00315 Cyt_C5_DNA_methylase C 98.1 0.00016 3.5E-09 65.8 15.3 143 146-299 2-165 (275)
238 KOG0820 Ribosomal RNA adenine 98.1 1.7E-05 3.7E-10 70.7 8.1 77 138-222 53-132 (315)
239 TIGR00006 S-adenosyl-methyltra 98.0 6E-05 1.3E-09 69.3 11.5 91 128-222 8-101 (305)
240 PRK10611 chemotaxis methyltran 98.0 1.9E-05 4.2E-10 72.1 7.9 102 144-248 116-262 (287)
241 PF04816 DUF633: Family of unk 98.0 0.00018 3.9E-09 62.7 13.3 139 147-301 1-143 (205)
242 PF03059 NAS: Nicotianamine sy 97.8 0.00038 8.3E-09 63.1 13.1 143 144-298 121-272 (276)
243 PRK10742 putative methyltransf 97.8 0.00012 2.5E-09 65.2 9.0 81 140-225 83-176 (250)
244 PF06962 rRNA_methylase: Putat 97.8 0.00021 4.5E-09 58.2 9.5 113 170-286 1-129 (140)
245 PF03141 Methyltransf_29: Puta 97.8 2.6E-05 5.7E-10 75.1 4.6 97 145-249 119-220 (506)
246 PF07942 N2227: N2227-like pro 97.7 0.00057 1.2E-08 61.8 12.4 153 125-281 33-241 (270)
247 PF00145 DNA_methylase: C-5 cy 97.7 0.00029 6.2E-09 65.0 10.9 144 146-301 2-166 (335)
248 KOG3987 Uncharacterized conser 97.7 8.9E-05 1.9E-09 63.7 6.0 90 144-248 113-207 (288)
249 COG0286 HsdM Type I restrictio 97.6 0.00075 1.6E-08 66.4 12.9 123 125-257 174-335 (489)
250 PF09243 Rsm22: Mitochondrial 97.6 0.0014 3E-08 59.7 12.9 124 144-279 34-165 (274)
251 PF04989 CmcI: Cephalosporin h 97.5 0.00042 9.1E-09 60.0 8.4 103 141-248 31-147 (206)
252 PF01795 Methyltransf_5: MraW 97.5 0.00041 8.8E-09 63.9 8.7 78 140-222 17-102 (310)
253 KOG2940 Predicted methyltransf 97.5 0.00022 4.8E-09 62.3 6.4 96 143-248 72-174 (325)
254 COG0275 Predicted S-adenosylme 97.5 0.0014 3.1E-08 59.6 11.8 93 127-222 10-105 (314)
255 PF13679 Methyltransf_32: Meth 97.5 0.001 2.3E-08 54.3 10.1 106 141-254 23-136 (141)
256 KOG2730 Methylase [General fun 97.5 0.00016 3.4E-09 62.8 4.8 73 143-222 94-174 (263)
257 PF04672 Methyltransf_19: S-ad 97.3 0.0033 7.1E-08 56.6 11.7 103 145-248 70-190 (267)
258 COG3897 Predicted methyltransf 97.3 0.00082 1.8E-08 57.4 7.0 96 143-247 79-177 (218)
259 PF11599 AviRa: RRNA methyltra 97.3 0.0013 2.8E-08 57.0 8.1 106 143-249 51-215 (246)
260 COG0500 SmtA SAM-dependent met 97.3 0.0053 1.1E-07 48.1 11.2 99 147-249 52-156 (257)
261 TIGR00675 dcm DNA-methyltransf 97.3 0.0045 9.7E-08 57.5 12.1 139 147-297 1-160 (315)
262 TIGR01444 fkbM_fam methyltrans 97.2 0.00081 1.8E-08 54.5 6.4 57 146-203 1-59 (143)
263 KOG2671 Putative RNA methylase 97.2 0.00094 2E-08 61.6 6.5 117 121-249 192-355 (421)
264 KOG2352 Predicted spermine/spe 97.1 0.0023 5E-08 61.7 9.2 104 140-248 44-161 (482)
265 PRK10458 DNA cytosine methylas 97.1 0.022 4.9E-07 55.6 15.5 150 144-299 88-289 (467)
266 COG2384 Predicted SAM-dependen 97.1 0.024 5.1E-07 49.5 13.7 143 142-300 15-161 (226)
267 KOG3178 Hydroxyindole-O-methyl 97.0 0.0032 7E-08 58.4 8.6 93 144-248 178-275 (342)
268 KOG1709 Guanidinoacetate methy 97.0 0.0064 1.4E-07 52.8 9.8 114 123-248 89-206 (271)
269 COG1064 AdhP Zn-dependent alco 97.0 0.0035 7.6E-08 58.4 8.8 100 135-248 158-259 (339)
270 COG0270 Dcm Site-specific DNA 96.9 0.011 2.4E-07 55.2 11.7 144 144-298 3-168 (328)
271 PTZ00146 fibrillarin; Provisio 96.9 0.0023 4.9E-08 58.6 6.3 11 236-246 257-267 (293)
272 KOG3115 Methyltransferase-like 96.9 0.0095 2.1E-07 51.3 9.4 103 144-248 61-183 (249)
273 KOG0822 Protein kinase inhibit 96.8 0.005 1.1E-07 59.9 8.0 119 125-247 349-477 (649)
274 KOG3201 Uncharacterized conser 96.7 0.0026 5.6E-08 52.8 4.9 124 119-248 9-140 (201)
275 PF10354 DUF2431: Domain of un 96.7 0.044 9.5E-07 46.1 12.3 126 151-285 4-155 (166)
276 PF03141 Methyltransf_29: Puta 96.6 0.0062 1.4E-07 59.1 7.6 131 145-296 367-505 (506)
277 PRK01747 mnmC bifunctional tRN 96.6 0.011 2.4E-07 60.4 9.5 122 142-279 56-224 (662)
278 KOG1269 SAM-dependent methyltr 96.5 0.0075 1.6E-07 57.0 7.2 103 140-248 107-215 (364)
279 PF05971 Methyltransf_10: Prot 96.5 0.023 4.9E-07 52.2 9.8 79 144-223 103-187 (299)
280 PF04445 SAM_MT: Putative SAM- 96.5 0.005 1.1E-07 54.5 5.3 81 140-225 70-163 (234)
281 PF07091 FmrO: Ribosomal RNA m 96.3 0.077 1.7E-06 47.4 12.0 132 140-277 102-239 (251)
282 COG1568 Predicted methyltransf 96.3 0.024 5.2E-07 51.1 8.7 103 143-248 152-260 (354)
283 KOG1331 Predicted methyltransf 96.3 0.0068 1.5E-07 54.8 5.0 95 141-248 43-143 (293)
284 PF10237 N6-adenineMlase: Prob 96.2 0.47 1E-05 39.7 15.4 109 125-248 12-123 (162)
285 COG5459 Predicted rRNA methyla 96.1 0.0074 1.6E-07 56.0 4.3 99 145-248 115-225 (484)
286 KOG1562 Spermidine synthase [A 96.1 0.049 1.1E-06 49.6 9.4 145 144-297 122-281 (337)
287 PRK13699 putative methylase; P 95.9 0.023 4.9E-07 50.3 6.7 76 194-281 2-95 (227)
288 PF02005 TRM: N2,N2-dimethylgu 95.9 0.016 3.4E-07 55.2 5.9 101 143-248 49-154 (377)
289 KOG1227 Putative methyltransfe 95.6 0.017 3.8E-07 52.5 4.6 131 98-243 150-290 (351)
290 PHA01634 hypothetical protein 95.6 0.045 9.8E-07 43.7 6.3 74 143-222 28-101 (156)
291 KOG2793 Putative N2,N2-dimethy 95.6 0.25 5.4E-06 44.2 11.8 102 144-249 87-200 (248)
292 PF02254 TrkA_N: TrkA-N domain 95.4 0.24 5.1E-06 38.4 10.2 91 152-248 4-96 (116)
293 COG2933 Predicted SAM-dependen 95.2 0.11 2.4E-06 46.6 8.2 72 140-222 208-279 (358)
294 PF05430 Methyltransf_30: S-ad 95.1 0.041 8.8E-07 44.0 4.8 86 193-297 32-123 (124)
295 KOG2078 tRNA modification enzy 95.1 0.016 3.5E-07 55.1 2.8 76 121-204 232-311 (495)
296 KOG1596 Fibrillarin and relate 95.0 0.067 1.5E-06 47.4 6.3 11 154-164 193-203 (317)
297 PF01555 N6_N4_Mtase: DNA meth 95.0 0.021 4.6E-07 49.4 3.2 51 123-180 175-225 (231)
298 PRK11524 putative methyltransf 94.7 0.066 1.4E-06 48.9 5.9 54 193-248 8-80 (284)
299 cd08283 FDH_like_1 Glutathione 94.6 0.071 1.5E-06 50.7 6.1 103 140-248 181-306 (386)
300 PRK11524 putative methyltransf 94.5 0.037 8E-07 50.6 3.7 55 126-187 195-249 (284)
301 COG1867 TRM1 N2,N2-dimethylgua 94.3 0.22 4.7E-06 46.8 8.2 98 144-247 53-153 (380)
302 KOG2798 Putative trehalase [Ca 94.1 0.75 1.6E-05 42.4 11.1 50 127-179 129-183 (369)
303 PF03492 Methyltransf_7: SAM d 94.1 0.38 8.3E-06 45.1 9.5 23 142-164 15-37 (334)
304 PRK09880 L-idonate 5-dehydroge 93.9 0.36 7.9E-06 44.9 9.2 98 140-248 166-266 (343)
305 COG4301 Uncharacterized conser 93.8 1 2.2E-05 40.3 11.0 106 141-248 76-193 (321)
306 PTZ00357 methyltransferase; Pr 93.8 0.45 9.7E-06 48.3 9.6 97 146-243 703-830 (1072)
307 cd08237 ribitol-5-phosphate_DH 93.7 0.43 9.4E-06 44.5 9.3 95 140-247 160-255 (341)
308 PRK13699 putative methylase; P 93.5 0.21 4.6E-06 44.1 6.4 56 126-188 150-205 (227)
309 KOG1253 tRNA methyltransferase 93.5 0.044 9.6E-07 53.1 2.2 105 141-247 107-215 (525)
310 COG1748 LYS9 Saccharopine dehy 93.2 0.29 6.2E-06 46.7 7.1 83 145-231 2-86 (389)
311 PF03269 DUF268: Caenorhabditi 93.0 0.17 3.8E-06 42.1 4.6 127 144-281 2-144 (177)
312 TIGR00497 hsdM type I restrict 92.8 1.3 2.8E-05 43.9 11.4 102 143-249 217-356 (501)
313 KOG3924 Putative protein methy 91.6 0.29 6.3E-06 46.3 4.8 118 127-246 176-306 (419)
314 KOG2352 Predicted spermine/spe 91.3 0.59 1.3E-05 45.5 6.7 100 144-248 296-416 (482)
315 PF00107 ADH_zinc_N: Zinc-bind 91.2 0.61 1.3E-05 36.6 5.8 84 155-248 3-89 (130)
316 PRK09424 pntA NAD(P) transhydr 90.8 1.6 3.4E-05 43.3 9.4 101 141-248 162-285 (509)
317 PRK05786 fabG 3-ketoacyl-(acyl 90.7 3 6.6E-05 36.1 10.4 78 144-222 5-90 (238)
318 PF03686 UPF0146: Uncharacteri 90.5 0.92 2E-05 36.2 6.1 89 143-248 13-102 (127)
319 PLN02668 indole-3-acetate carb 90.4 7.3 0.00016 37.3 13.1 20 144-163 64-83 (386)
320 COG3510 CmcI Cephalosporin hyd 90.3 3.5 7.6E-05 35.5 9.7 103 141-248 68-180 (237)
321 cd05188 MDR Medium chain reduc 90.2 2.9 6.3E-05 36.5 9.9 96 141-248 132-232 (271)
322 PF02636 Methyltransf_28: Puta 90.2 0.33 7.2E-06 43.5 3.8 53 129-181 3-63 (252)
323 cd08254 hydroxyacyl_CoA_DH 6-h 90.0 2.7 5.8E-05 38.4 9.9 98 140-248 162-263 (338)
324 PF07279 DUF1442: Protein of u 89.9 6.7 0.00014 34.3 11.4 112 125-248 29-148 (218)
325 KOG2920 Predicted methyltransf 89.8 0.22 4.7E-06 45.2 2.2 127 116-249 90-235 (282)
326 cd08230 glucose_DH Glucose deh 89.5 2.4 5.2E-05 39.6 9.2 94 141-247 170-268 (355)
327 PRK10669 putative cation:proto 89.3 3.2 7E-05 41.6 10.5 96 145-248 418-515 (558)
328 KOG4058 Uncharacterized conser 89.2 1.3 2.9E-05 36.5 6.1 63 140-205 69-135 (199)
329 KOG1501 Arginine N-methyltrans 89.1 0.7 1.5E-05 44.5 5.1 55 145-201 68-125 (636)
330 COG3129 Predicted SAM-dependen 88.7 1.5 3.1E-05 38.9 6.4 85 142-227 77-167 (292)
331 TIGR02822 adh_fam_2 zinc-bindi 88.6 3.2 6.9E-05 38.5 9.3 92 139-247 161-253 (329)
332 COG1565 Uncharacterized conser 88.3 1.2 2.5E-05 42.0 5.9 54 127-180 61-121 (370)
333 COG1063 Tdh Threonine dehydrog 88.3 1.4 3E-05 41.5 6.7 98 142-248 167-269 (350)
334 PRK06940 short chain dehydroge 87.8 4 8.6E-05 36.7 9.2 76 145-222 3-85 (275)
335 PRK03659 glutathione-regulated 87.4 4 8.8E-05 41.4 9.8 96 145-248 401-498 (601)
336 KOG0024 Sorbitol dehydrogenase 87.4 1.3 2.9E-05 41.0 5.7 99 140-248 166-273 (354)
337 PRK09496 trkA potassium transp 87.3 4.5 9.8E-05 39.1 9.8 96 146-248 2-99 (453)
338 PF05206 TRM13: Methyltransfer 87.1 3.7 8E-05 37.1 8.4 66 140-206 15-87 (259)
339 TIGR03451 mycoS_dep_FDH mycoth 87.1 1.5 3.2E-05 41.1 6.2 97 140-247 173-275 (358)
340 cd08281 liver_ADH_like1 Zinc-d 87.1 3.7 8E-05 38.6 8.9 99 140-247 188-289 (371)
341 COG0604 Qor NADPH:quinone redu 87.0 2.1 4.5E-05 40.0 7.0 98 140-248 139-241 (326)
342 PRK03562 glutathione-regulated 86.9 4.1 8.9E-05 41.5 9.5 97 144-248 400-498 (621)
343 PF03446 NAD_binding_2: NAD bi 86.8 2.9 6.3E-05 34.6 7.1 107 153-279 8-117 (163)
344 PF03435 Saccharop_dh: Sacchar 86.6 1.9 4E-05 41.0 6.6 75 147-224 1-78 (386)
345 PF06460 NSP13: Coronavirus NS 86.6 19 0.00041 32.6 12.2 136 140-300 58-211 (299)
346 TIGR03366 HpnZ_proposed putati 86.6 3.3 7.1E-05 37.3 7.9 98 140-248 117-218 (280)
347 KOG2651 rRNA adenine N-6-methy 86.6 1.4 3E-05 41.7 5.4 38 141-180 151-188 (476)
348 PF05063 MT-A70: MT-A70 ; Int 86.5 2.2 4.8E-05 35.9 6.3 59 214-281 1-76 (176)
349 KOG3350 Uncharacterized conser 86.5 5.8 0.00013 33.7 8.5 109 125-248 60-172 (217)
350 KOG0023 Alcohol dehydrogenase, 86.4 1.9 4.2E-05 40.0 6.1 116 124-248 155-279 (360)
351 PF12692 Methyltransf_17: S-ad 86.0 0.93 2E-05 37.2 3.5 99 144-248 29-134 (160)
352 COG0569 TrkA K+ transport syst 86.0 4.3 9.3E-05 35.7 8.1 87 146-238 2-91 (225)
353 PRK07806 short chain dehydroge 85.5 8.6 0.00019 33.4 9.9 103 144-248 6-134 (248)
354 PRK08324 short chain dehydroge 85.4 3.6 7.7E-05 42.4 8.3 79 143-222 421-507 (681)
355 PF05711 TylF: Macrocin-O-meth 85.2 4.1 8.9E-05 36.5 7.6 104 144-248 75-212 (248)
356 TIGR03201 dearomat_had 6-hydro 84.8 3.6 7.7E-05 38.3 7.4 40 139-180 162-202 (349)
357 PF07757 AdoMet_MTase: Predict 84.6 1 2.2E-05 35.0 3.0 49 127-178 41-90 (112)
358 PF06859 Bin3: Bicoid-interact 84.6 0.85 1.8E-05 35.5 2.5 35 213-248 1-44 (110)
359 PLN03154 putative allyl alcoho 84.6 3 6.6E-05 38.9 6.9 97 140-247 155-257 (348)
360 PF01210 NAD_Gly3P_dh_N: NAD-d 84.5 2.3 4.9E-05 35.1 5.3 93 147-249 2-104 (157)
361 PRK07576 short chain dehydroge 84.3 5.1 0.00011 35.6 8.0 78 143-221 8-94 (264)
362 COG1255 Uncharacterized protei 84.2 10 0.00023 29.8 8.3 88 145-248 15-102 (129)
363 PRK05872 short chain dehydroge 84.2 7.9 0.00017 35.1 9.3 79 143-222 8-94 (296)
364 PF01555 N6_N4_Mtase: DNA meth 84.1 1.8 4E-05 37.1 4.8 34 214-248 1-56 (231)
365 PLN02896 cinnamyl-alcohol dehy 84.0 3.2 7E-05 38.7 6.8 79 143-222 9-88 (353)
366 cd08232 idonate-5-DH L-idonate 83.8 7 0.00015 35.9 8.9 97 143-248 165-262 (339)
367 KOG1201 Hydroxysteroid 17-beta 83.6 23 0.0005 32.6 11.7 77 143-222 37-123 (300)
368 cd08255 2-desacetyl-2-hydroxye 83.5 6.6 0.00014 34.8 8.4 95 140-247 94-189 (277)
369 PRK06701 short chain dehydroge 83.5 6.8 0.00015 35.5 8.5 79 143-222 45-133 (290)
370 PRK07533 enoyl-(acyl carrier p 83.3 14 0.00029 32.8 10.2 80 143-222 9-97 (258)
371 PRK12939 short chain dehydroge 83.2 8.7 0.00019 33.3 8.9 79 143-222 6-93 (250)
372 PRK09496 trkA potassium transp 82.7 6.5 0.00014 38.0 8.5 95 144-246 231-328 (453)
373 PF11312 DUF3115: Protein of u 82.6 3.8 8.2E-05 37.9 6.3 128 120-248 49-242 (315)
374 PLN02819 lysine-ketoglutarate 81.8 8 0.00017 41.7 9.3 83 144-231 569-666 (1042)
375 cd08239 THR_DH_like L-threonin 81.7 6 0.00013 36.4 7.6 100 137-247 157-261 (339)
376 PF00106 adh_short: short chai 81.4 12 0.00025 30.3 8.5 76 146-222 2-89 (167)
377 PRK07904 short chain dehydroge 81.3 4.5 9.9E-05 35.8 6.4 80 142-222 6-96 (253)
378 PLN03209 translocon at the inn 81.2 5.7 0.00012 40.0 7.5 82 140-222 76-168 (576)
379 PRK08340 glucose-1-dehydrogena 81.1 5 0.00011 35.4 6.6 77 145-222 1-85 (259)
380 TIGR00561 pntA NAD(P) transhyd 81.1 4.3 9.3E-05 40.3 6.5 97 142-245 162-281 (511)
381 PLN02586 probable cinnamyl alc 81.0 7.8 0.00017 36.4 8.2 96 141-247 181-277 (360)
382 cd08293 PTGR2 Prostaglandin re 81.0 4.5 9.7E-05 37.3 6.4 99 140-247 149-253 (345)
383 PF14740 DUF4471: Domain of un 80.7 9.5 0.00021 35.0 8.2 65 212-279 221-286 (289)
384 TIGR01202 bchC 2-desacetyl-2-h 80.7 6.1 0.00013 36.1 7.2 87 142-247 143-230 (308)
385 TIGR03589 PseB UDP-N-acetylglu 80.5 3.9 8.4E-05 37.8 5.8 77 144-222 4-83 (324)
386 PF08484 Methyltransf_14: C-me 80.3 2.4 5.2E-05 35.4 3.9 103 127-248 52-159 (160)
387 PRK09072 short chain dehydroge 80.0 9.1 0.0002 33.8 7.9 78 144-222 5-89 (263)
388 cd08245 CAD Cinnamyl alcohol d 79.9 17 0.00037 33.1 9.9 98 139-248 158-256 (330)
389 PF13460 NAD_binding_10: NADH( 79.5 32 0.0007 28.2 10.7 63 153-222 6-69 (183)
390 PRK12829 short chain dehydroge 79.1 5.9 0.00013 34.8 6.4 80 141-222 8-95 (264)
391 PRK07502 cyclohexadienyl dehyd 79.1 11 0.00024 34.6 8.4 88 145-245 7-97 (307)
392 PF07652 Flavi_DEAD: Flaviviru 79.0 6.7 0.00015 32.2 6.0 104 144-248 5-133 (148)
393 TIGR02825 B4_12hDH leukotriene 78.9 12 0.00026 34.2 8.6 97 140-247 135-236 (325)
394 PF14314 Methyltrans_Mon: Viru 78.8 16 0.00034 37.5 9.8 156 136-301 316-504 (675)
395 PRK07109 short chain dehydroge 78.6 11 0.00025 34.9 8.4 79 143-222 7-94 (334)
396 PRK08265 short chain dehydroge 78.5 14 0.0003 32.7 8.6 76 144-222 6-89 (261)
397 PF07669 Eco57I: Eco57I restri 78.5 23 0.0005 27.1 8.7 35 213-249 2-52 (106)
398 PLN02427 UDP-apiose/xylose syn 78.5 4.4 9.5E-05 38.3 5.6 77 144-221 14-94 (386)
399 PF02153 PDH: Prephenate dehyd 78.2 5.4 0.00012 35.8 5.9 68 166-245 9-76 (258)
400 PRK06172 short chain dehydroge 77.7 5.8 0.00012 34.7 5.9 78 144-222 7-93 (253)
401 PRK07063 short chain dehydroge 77.3 8 0.00017 34.0 6.7 78 144-222 7-95 (260)
402 PRK07326 short chain dehydroge 77.2 8.3 0.00018 33.3 6.6 77 144-221 6-90 (237)
403 PRK05867 short chain dehydroge 76.9 7.1 0.00015 34.3 6.2 79 143-222 8-95 (253)
404 PRK07890 short chain dehydroge 76.4 11 0.00024 32.9 7.3 79 143-222 4-91 (258)
405 PF01408 GFO_IDH_MocA: Oxidore 76.3 17 0.00037 27.7 7.6 89 146-247 2-92 (120)
406 cd05278 FDH_like Formaldehyde 76.2 7.1 0.00015 35.9 6.3 99 140-247 164-266 (347)
407 PRK08217 fabG 3-ketoacyl-(acyl 76.0 6.6 0.00014 34.1 5.7 79 143-222 4-91 (253)
408 PRK08594 enoyl-(acyl carrier p 75.9 19 0.00041 31.9 8.7 79 143-221 6-95 (257)
409 PRK09291 short chain dehydroge 75.9 10 0.00023 33.1 7.0 77 145-222 3-82 (257)
410 PRK12937 short chain dehydroge 75.9 25 0.00053 30.4 9.3 79 143-222 4-92 (245)
411 PRK07454 short chain dehydroge 75.7 10 0.00022 32.9 6.8 79 143-222 5-92 (241)
412 cd08295 double_bond_reductase_ 75.6 10 0.00022 35.0 7.1 99 140-247 148-250 (338)
413 cd05565 PTS_IIB_lactose PTS_II 75.6 12 0.00025 28.6 6.2 76 146-248 2-78 (99)
414 PRK12746 short chain dehydroge 75.6 17 0.00038 31.6 8.3 78 144-222 6-99 (254)
415 PLN02662 cinnamyl-alcohol dehy 75.5 6.9 0.00015 35.6 5.9 78 144-222 4-85 (322)
416 COG0863 DNA modification methy 75.4 6.1 0.00013 35.8 5.5 49 140-191 219-267 (302)
417 cd01078 NAD_bind_H4MPT_DH NADP 75.3 14 0.0003 31.3 7.4 83 143-226 27-110 (194)
418 PRK07666 fabG 3-ketoacyl-(acyl 75.2 11 0.00023 32.7 6.8 78 144-222 7-93 (239)
419 PRK06949 short chain dehydroge 75.0 11 0.00024 33.0 6.9 79 143-222 8-95 (258)
420 PF05050 Methyltransf_21: Meth 75.0 5.3 0.00012 32.3 4.6 39 149-187 1-42 (167)
421 PRK05650 short chain dehydroge 74.9 9.4 0.0002 33.9 6.5 76 146-222 2-86 (270)
422 PRK07231 fabG 3-ketoacyl-(acyl 74.8 8.2 0.00018 33.5 6.0 78 144-222 5-90 (251)
423 PRK10309 galactitol-1-phosphat 74.7 17 0.00036 33.6 8.4 100 140-247 157-259 (347)
424 PRK07677 short chain dehydroge 74.5 12 0.00027 32.7 7.1 77 145-222 2-87 (252)
425 COG3320 Putative dehydrogenase 74.5 18 0.00039 34.4 8.2 95 152-248 7-135 (382)
426 PRK08618 ornithine cyclodeamin 74.4 24 0.00053 32.7 9.3 95 141-248 124-220 (325)
427 PLN02253 xanthoxin dehydrogena 74.4 8.7 0.00019 34.2 6.2 78 144-222 18-103 (280)
428 PRK06128 oxidoreductase; Provi 74.4 25 0.00055 31.8 9.3 78 144-222 55-143 (300)
429 PRK07102 short chain dehydroge 74.3 8 0.00017 33.6 5.8 77 145-222 2-85 (243)
430 cd08285 NADP_ADH NADP(H)-depen 74.0 8.8 0.00019 35.5 6.3 99 140-247 163-265 (351)
431 PRK06194 hypothetical protein; 73.9 9.9 0.00021 34.0 6.4 78 144-222 6-92 (287)
432 PRK06079 enoyl-(acyl carrier p 73.9 28 0.0006 30.6 9.2 78 143-222 6-92 (252)
433 PRK06139 short chain dehydroge 73.9 9.9 0.00021 35.4 6.6 79 143-222 6-93 (330)
434 PRK08159 enoyl-(acyl carrier p 73.8 34 0.00073 30.6 9.9 79 143-221 9-96 (272)
435 TIGR00853 pts-lac PTS system, 73.8 11 0.00025 28.3 5.7 63 145-230 4-67 (95)
436 cd00401 AdoHcyase S-adenosyl-L 73.8 13 0.00028 35.9 7.5 89 142-248 200-289 (413)
437 cd08294 leukotriene_B4_DH_like 73.8 14 0.00029 33.7 7.4 96 140-247 140-240 (329)
438 cd08238 sorbose_phosphate_red 73.8 6.9 0.00015 37.4 5.6 104 140-247 172-287 (410)
439 cd08261 Zn_ADH7 Alcohol dehydr 73.5 8.5 0.00018 35.3 6.0 98 140-247 156-257 (337)
440 PRK07478 short chain dehydroge 73.4 12 0.00026 32.8 6.7 78 144-222 6-92 (254)
441 PRK15181 Vi polysaccharide bio 73.3 6.6 0.00014 36.6 5.3 78 144-222 15-99 (348)
442 KOG4174 Uncharacterized conser 73.2 45 0.00098 30.1 10.0 107 143-249 56-191 (282)
443 PRK07024 short chain dehydroge 73.2 8.2 0.00018 34.0 5.6 77 145-222 3-87 (257)
444 TIGR01963 PHB_DH 3-hydroxybuty 73.1 16 0.00034 31.8 7.4 77 145-222 2-87 (255)
445 PRK06500 short chain dehydroge 73.0 27 0.0006 30.1 8.9 76 144-222 6-89 (249)
446 TIGR02819 fdhA_non_GSH formald 73.0 9.5 0.00021 36.4 6.4 102 140-248 182-299 (393)
447 PRK06138 short chain dehydroge 73.0 12 0.00026 32.5 6.6 78 144-222 5-90 (252)
448 PRK06181 short chain dehydroge 72.8 12 0.00025 33.0 6.6 77 145-222 2-87 (263)
449 PRK12826 3-ketoacyl-(acyl-carr 72.8 11 0.00024 32.6 6.4 78 144-222 6-92 (251)
450 PTZ00142 6-phosphogluconate de 72.8 24 0.00053 34.7 9.2 94 147-247 4-99 (470)
451 PRK07097 gluconate 5-dehydroge 72.6 10 0.00022 33.5 6.1 79 143-222 9-96 (265)
452 TIGR02415 23BDH acetoin reduct 72.6 21 0.00046 31.0 8.1 76 146-222 2-86 (254)
453 PF11899 DUF3419: Protein of u 72.6 6.8 0.00015 37.4 5.2 38 140-180 32-69 (380)
454 CHL00194 ycf39 Ycf39; Provisio 72.2 71 0.0015 29.1 11.8 69 146-220 2-71 (317)
455 PRK08339 short chain dehydroge 72.0 13 0.00029 33.0 6.7 79 143-222 7-94 (263)
456 cd08236 sugar_DH NAD(P)-depend 72.0 17 0.00037 33.4 7.7 100 140-248 156-258 (343)
457 TIGR03206 benzo_BadH 2-hydroxy 72.0 13 0.00028 32.2 6.6 78 144-222 3-89 (250)
458 COG4627 Uncharacterized protei 71.9 1 2.2E-05 37.4 -0.5 39 210-249 44-87 (185)
459 TIGR00518 alaDH alanine dehydr 71.9 4.9 0.00011 38.2 4.1 97 143-246 166-265 (370)
460 PLN02740 Alcohol dehydrogenase 71.7 27 0.00059 32.9 9.1 99 140-247 195-299 (381)
461 PRK13394 3-hydroxybutyrate deh 71.6 11 0.00024 33.0 6.0 78 144-222 7-93 (262)
462 PLN02514 cinnamyl-alcohol dehy 71.5 23 0.00051 33.0 8.6 96 141-247 178-274 (357)
463 cd05285 sorbitol_DH Sorbitol d 71.4 26 0.00057 32.2 8.8 99 139-247 158-264 (343)
464 cd08278 benzyl_alcohol_DH Benz 71.2 12 0.00025 35.1 6.4 98 140-247 183-284 (365)
465 PRK07814 short chain dehydroge 71.1 14 0.0003 32.7 6.6 79 143-222 9-96 (263)
466 PRK08267 short chain dehydroge 71.1 15 0.00033 32.2 6.9 76 145-222 2-86 (260)
467 PRK07035 short chain dehydroge 70.9 14 0.0003 32.3 6.5 78 144-222 8-94 (252)
468 TIGR01915 npdG NADPH-dependent 70.9 28 0.00061 30.2 8.4 93 146-248 2-100 (219)
469 PRK06603 enoyl-(acyl carrier p 70.7 43 0.00093 29.6 9.8 79 143-222 7-95 (260)
470 PRK07417 arogenate dehydrogena 70.7 18 0.00039 32.7 7.3 82 146-241 2-84 (279)
471 PLN02178 cinnamyl-alcohol dehy 70.7 25 0.00053 33.3 8.6 95 142-247 177-272 (375)
472 TIGR02622 CDP_4_6_dhtase CDP-g 70.7 8.7 0.00019 35.7 5.4 78 144-222 4-84 (349)
473 PRK08277 D-mannonate oxidoredu 70.6 14 0.0003 32.9 6.6 79 143-222 9-96 (278)
474 PRK05866 short chain dehydroge 70.5 13 0.00027 33.8 6.3 78 144-222 40-126 (293)
475 TIGR01692 HIBADH 3-hydroxyisob 70.4 38 0.00081 30.7 9.4 83 153-248 3-89 (288)
476 PRK11908 NAD-dependent epimera 70.0 10 0.00022 35.2 5.7 70 145-219 2-74 (347)
477 PRK05599 hypothetical protein; 70.0 25 0.00053 30.8 7.9 76 146-222 2-86 (246)
478 cd08234 threonine_DH_like L-th 69.9 26 0.00056 31.9 8.4 97 140-247 156-256 (334)
479 PRK06124 gluconate 5-dehydroge 69.9 12 0.00026 32.8 5.9 79 143-222 10-97 (256)
480 TIGR02818 adh_III_F_hyde S-(hy 69.8 29 0.00063 32.5 8.8 98 140-248 182-287 (368)
481 PRK09186 flagellin modificatio 69.7 13 0.00029 32.3 6.2 77 144-221 4-91 (256)
482 PRK08643 acetoin reductase; Va 69.5 15 0.00033 32.1 6.5 77 145-222 3-88 (256)
483 PF02719 Polysacc_synt_2: Poly 69.3 26 0.00056 32.3 8.0 70 153-222 6-86 (293)
484 cd08296 CAD_like Cinnamyl alco 69.2 28 0.00062 31.9 8.5 96 140-247 160-258 (333)
485 PRK05875 short chain dehydroge 69.0 15 0.00033 32.5 6.4 78 144-222 7-95 (276)
486 COG0240 GpsA Glycerol-3-phosph 68.9 54 0.0012 30.7 10.0 97 146-249 3-106 (329)
487 PLN02827 Alcohol dehydrogenase 68.7 15 0.00032 34.8 6.6 97 140-247 190-294 (378)
488 TIGR00936 ahcY adenosylhomocys 68.5 33 0.00072 33.1 8.9 89 142-248 193-282 (406)
489 PF01053 Cys_Met_Meta_PP: Cys/ 68.4 9 0.00019 36.7 5.0 121 117-248 49-177 (386)
490 TIGR03693 ocin_ThiF_like putat 68.2 39 0.00084 34.4 9.4 84 141-225 126-216 (637)
491 PRK12429 3-hydroxybutyrate deh 68.2 17 0.00038 31.5 6.6 80 143-222 3-90 (258)
492 PRK07453 protochlorophyllide o 68.0 15 0.00033 33.6 6.4 79 143-221 5-91 (322)
493 PRK07370 enoyl-(acyl carrier p 68.0 42 0.00092 29.6 9.1 105 143-248 5-147 (258)
494 PRK07985 oxidoreductase; Provi 68.0 53 0.0012 29.7 9.9 105 143-248 48-185 (294)
495 PRK05876 short chain dehydroge 67.7 13 0.00028 33.3 5.8 79 143-221 5-91 (275)
496 KOG1205 Predicted dehydrogenas 67.7 32 0.00069 31.5 8.2 105 143-247 11-148 (282)
497 cd05213 NAD_bind_Glutamyl_tRNA 67.6 28 0.0006 32.2 8.0 104 143-261 177-282 (311)
498 PLN02657 3,8-divinyl protochlo 67.5 10 0.00023 36.1 5.3 82 140-222 56-145 (390)
499 PRK15057 UDP-glucose 6-dehydro 67.1 41 0.00088 32.2 9.2 88 153-248 7-117 (388)
500 PRK05854 short chain dehydroge 67.0 16 0.00034 33.5 6.3 79 143-221 13-101 (313)
No 1
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-74 Score=490.64 Aligned_cols=244 Identities=86% Similarity=1.316 Sum_probs=237.7
Q ss_pred CCCCCCCCceeecccccCceEEEeCCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHcccccc
Q 021911 60 GGGMKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNI 139 (305)
Q Consensus 60 ~g~~~~g~~~~~~~~~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~ 139 (305)
.++.++|+||+||||||+|||++++++|+|+|+|++|++++|.|++++++++++ ++|||+||||+|+|++.|+..++++
T Consensus 74 ~~g~~gG~~v~vEPHRh~GVfi~rgkeDaLvTkNlvpge~vYgEkRisv~~~~~-kvEyRVWnPfrSKLAA~I~gGvdni 152 (317)
T KOG1596|consen 74 AGGIKGGSKVLVEPHRHAGVFIARGKEDALVTKNLVPGESVYGEKRISVENEDG-KVEYRVWNPFRSKLAAGILGGVDNI 152 (317)
T ss_pred cccccCCceEEeccccccceEEEcCchhheeecccCCcccccCceEEEeecCCC-cEEEEEeChHHHHHHHHhhcCccce
Confidence 345678999999999999999999999999999999999999999999999876 9999999999999999999999999
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+++|+.+||+||+++|++++|+++.++|++.|||||+|+++.++|+.+|++++||.+|+.|++++.+|+|+..++|+||+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcC
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~ 299 (305)
|+++|+|.+++.+||+.|||++|.|+++++++|++++.+++.+|+.|+++|++..+++.|+++|+|||+||++||+.|++
T Consensus 233 Dvaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP~erdha~VvG~Y~~ 312 (317)
T KOG1596|consen 233 DVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEPFERDHACVVGVYRR 312 (317)
T ss_pred cCCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheeccccccCCceEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021911 300 PKKQK 304 (305)
Q Consensus 300 ~~~~~ 304 (305)
+++++
T Consensus 313 ~~~~k 317 (317)
T KOG1596|consen 313 PKKSK 317 (317)
T ss_pred CCCCC
Confidence 98753
No 2
>PTZ00146 fibrillarin; Provisional
Probab=100.00 E-value=7.6e-62 Score=437.47 Aligned_cols=237 Identities=76% Similarity=1.180 Sum_probs=223.3
Q ss_pred CceeecccccCceEEEeCCcceeeeccccCCccccCcceeEeecCCC-ceeeeeecCchhhHHHHHHHccccccCCCCCC
Q 021911 67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145 (305)
Q Consensus 67 ~~~~~~~~~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~-~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~ 145 (305)
+||+||||+++|||+.+++++.|+|+|++|++++|.|++|+++.+++ +++|||+||||+|+|++.|+..|+.+.+++++
T Consensus 55 ~~~~~~~~~~~gv~~~~~~~~~l~t~n~~pg~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~ 134 (293)
T PTZ00146 55 GKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGS 134 (293)
T ss_pred CceEEeeeeecCEEEeecCCceeEeecCCCCcccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCC
Confidence 79999999999999999999999999999999999999999987654 68899999999999999999999999999999
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChh
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD 225 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~ 225 (305)
+|||||||+|++++++|+++++.+.|||||+|+++.++|++++++++||.+++.|++.+..+.++..+||+||+|+++|+
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd 214 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD 214 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc
Confidence 99999999999999999999888999999999988889999998889999999999876556555679999999999999
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCCCCC
Q 021911 226 QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303 (305)
Q Consensus 226 ~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~~~ 303 (305)
|.+++.+++.++|||+|+|++++++.|++...+++.+|.+++++|++.+|+++++++++||+++|++|+++|++++++
T Consensus 215 q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~~~~~~ 292 (293)
T PTZ00146 215 QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292 (293)
T ss_pred hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEcCCccC
Confidence 999998899999999999999999999999999999999999999999999999999999999999999999998754
No 3
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=100.00 E-value=3.6e-55 Score=375.43 Aligned_cols=228 Identities=76% Similarity=1.162 Sum_probs=201.4
Q ss_pred eccc-ccCceEEEeCCcceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEE
Q 021911 71 VEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY 149 (305)
Q Consensus 71 ~~~~-~~~gv~~~~~~~~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLD 149 (305)
|+|| +++|||+.+++.+.|+|+|++|++++|+|+++.+++. ++++|||+||||+|+|++.++.+++.++++++++||+
T Consensus 1 i~~h~~~~gvy~~~~~~~~l~T~n~~pg~~vYGEk~i~~~~~-~~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLY 79 (229)
T PF01269_consen 1 IEPHERFEGVYIARGKGDALATKNLVPGESVYGEKRISVEGE-GKKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLY 79 (229)
T ss_dssp -EEEESSTTEEEEETTSTEEEEE-SSTT--SSSSEEEEETTE----EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEE
T ss_pred CcceeeecCEEEEecCCCeEEEecCCCCCcccCceeEeecCC-CCccceeecCchhhHHHHHHHcCccccCCCCCCEEEE
Confidence 6899 9999999999999999999999999999999999885 7899999999999999999999999999999999999
Q ss_pred EecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHH
Q 021911 150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 229 (305)
Q Consensus 150 lG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~ 229 (305)
||+++|++.+|+++++++++.|||||+|++..++|++++++|+||.++.+|++.+..|+++.+++|+|++|+++|+|.++
T Consensus 80 LGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I 159 (229)
T PF01269_consen 80 LGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARI 159 (229)
T ss_dssp ETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHH
T ss_pred ecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcC
Q 021911 230 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~ 299 (305)
+.+|+..+||+||++++++++.|++++.+++.+|.+++++|++.+|+++++++++||++||++|+++|++
T Consensus 160 ~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 160 AALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRYRK 229 (229)
T ss_dssp HHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE--
T ss_pred HHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974
No 4
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-51 Score=340.65 Aligned_cols=226 Identities=62% Similarity=0.940 Sum_probs=218.7
Q ss_pred Cceeeccc-ccCceEEEeCCc--ceeeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCC
Q 021911 67 SKVVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKP 143 (305)
Q Consensus 67 ~~~~~~~~-~~~gv~~~~~~~--~~l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~ 143 (305)
.++.+++| +++|||+...++ +.|+|+|++|+.++|+|+.+.+.++ |||+|||++|+|++.+|.+|+.+.+++
T Consensus 2 ~~~~v~~~~~~~gvy~~~~~dg~~~l~T~nl~pg~~VYGE~ii~~~~~-----eYR~Wnp~RSKLaAaIl~Gl~~~pi~~ 76 (231)
T COG1889 2 AMVEVKPHERFEGVYIVRFKDGSDRLATKNLVPGERVYGERIIKVEGE-----EYREWNPRRSKLAAAILKGLKNFPIKE 76 (231)
T ss_pred ceeecccccccCCeEEEEcccccceeeeecCCCCccccCceeEEecCc-----ceeeeCcchhHHHHHHHcCcccCCcCC
Confidence 35778999 799999999876 7789999999999999999999997 999999999999999999999999999
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+++||+||+++|++.+|++++++ ++.|||||+|++..++++.++++|+||.++..|++.+..|+++.+++|+|+.|+++
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQ 155 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQ 155 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecCC
Confidence 99999999999999999999996 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 224 PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
|+|++++..|+..|||++|++++++|+.|++++.++.++|.+++++|++.+|+++++++++||++||++++++++
T Consensus 156 p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~~~~ 230 (231)
T COG1889 156 PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAKYK 230 (231)
T ss_pred chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccceEEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>PRK04266 fibrillarin; Provisional
Probab=100.00 E-value=3.1e-34 Score=252.90 Aligned_cols=221 Identities=52% Similarity=0.821 Sum_probs=191.3
Q ss_pred cccccCceEEEeCCcce--eeeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEE
Q 021911 72 EPHRHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY 149 (305)
Q Consensus 72 ~~~~~~gv~~~~~~~~~--l~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLD 149 (305)
.+|+++|+|+.+++++. |+|+|++|++++|.+........ +|+.|+|+++++++.++..++.+.++++.+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD 78 (226)
T PRK04266 4 KKEIFEGVYEVEFEDGSKRLATKNLVPGKRVYGERLIKWEGV-----EYREWNPRRSKLAAAILKGLKNFPIKKGSKVLY 78 (226)
T ss_pred cccccCCEEEEecCCCcceEeeecCCCCCCCCCceEEecCCc-----EEEEECCCccchHHHHHhhHhhCCCCCCCEEEE
Confidence 58999999999986666 79999999999999988665543 899999999999999997665568899999999
Q ss_pred EecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHH
Q 021911 150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 229 (305)
Q Consensus 150 lG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~ 229 (305)
+|||+|.++.++++.++ .++||++|+++.+++.+.+.+++++||.++.+|+..+..+..+..+||+|+++++.+++..+
T Consensus 79 ~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~ 157 (226)
T PRK04266 79 LGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEI 157 (226)
T ss_pred EccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChhHHHH
Confidence 99999999999999985 67999999999888888888877789999999997643222234679999999998888766
Q ss_pred HHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 230 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
+..++.++|||||+|++++++.+++...++...+..++++++++||++++.+++.||.++|+.++++|+
T Consensus 158 ~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred HHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 555999999999999998877677777777777777889999999999999999999999999999985
No 6
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.2e-21 Score=180.91 Aligned_cols=146 Identities=35% Similarity=0.381 Sum_probs=124.5
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCc-EEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYA 173 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~-~V~a 173 (305)
+.....|.+++|++||. .|++++.+| +++|+++|||+||++|.+|.|+|+.+...+ .|+|
T Consensus 127 ~~~~~~~~~G~~~vQd~-------------sS~l~a~~L------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A 187 (355)
T COG0144 127 IGRLPEFAEGLIYVQDE-------------ASQLPALVL------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVA 187 (355)
T ss_pred cccChhhhceEEEEcCH-------------HHHHHHHHc------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEE
Confidence 44566899999999998 999999998 799999999999999999999999986544 4699
Q ss_pred EeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hH
Q 021911 174 VEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQ 226 (305)
Q Consensus 174 vD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~ 226 (305)
+|+|+++++.+.++++.. .|+..++.|............+||.|++|+||. .|
T Consensus 188 ~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ 267 (355)
T COG0144 188 VDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQ 267 (355)
T ss_pred EcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHH
Confidence 999999988888888765 678889999876654322233699999999952 48
Q ss_pred HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 227 ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 227 ~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
.++|. ++.++|||||.|+||| |++...+|+.++
T Consensus 268 ~~iL~-~a~~~lk~GG~LVYST--CS~~~eENE~vV 300 (355)
T COG0144 268 KEILA-AALKLLKPGGVLVYST--CSLTPEENEEVV 300 (355)
T ss_pred HHHHH-HHHHhcCCCCEEEEEc--cCCchhcCHHHH
Confidence 99998 9999999999999999 888888888776
No 7
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.85 E-value=2.6e-20 Score=179.64 Aligned_cols=202 Identities=21% Similarity=0.282 Sum_probs=146.3
Q ss_pred ccccCceEEEeC--Cccee-eec--cccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEE
Q 021911 73 PHRHEGVFIAKG--KEDAL-VTK--NLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARV 147 (305)
Q Consensus 73 ~~~~~gv~~~~~--~~~~l-~t~--~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~V 147 (305)
.+..+|+-+.+. .++.+ +.. +.+...+.|.++.+.+||. .|++++.++ .++++.+|
T Consensus 196 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~-------------~s~l~~~~l------~~~~g~~V 256 (434)
T PRK14901 196 ALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDR-------------SAQLVAPLL------DPQPGEVI 256 (434)
T ss_pred HHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEE
Confidence 344566655543 24444 322 2245667899999999998 889988877 57889999
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccc-cCCCcEeEEEEeCCCh
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQP 224 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~~~ 224 (305)
||+|||+|.++.++++.+.+.++|+++|+++.++..+.++++.. .||++++.|++...... ....+||+|++|+||.
T Consensus 257 LDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCS 336 (434)
T PRK14901 257 LDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCS 336 (434)
T ss_pred EEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCC
Confidence 99999999999999999877789999999998887777776654 57999999998764211 1246899999999852
Q ss_pred -------------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHC-CCcEe
Q 021911 225 -------------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQD-QFKPF 278 (305)
Q Consensus 225 -------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~-Gf~~~ 278 (305)
.|.+++. ++.++|||||+|+|+| |++...+++.++ ...|+++ +|++.
T Consensus 337 g~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~-~a~~~lkpgG~lvyst--csi~~~Ene~~v----~~~l~~~~~~~~~ 409 (434)
T PRK14901 337 GLGTLHRHPDARWRQTPEKIQELAPLQAELLE-SLAPLLKPGGTLVYAT--CTLHPAENEAQI----EQFLARHPDWKLE 409 (434)
T ss_pred cccccccCcchhhhCCHHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEe--CCCChhhHHHHH----HHHHHhCCCcEec
Confidence 2778887 9999999999999999 777777766554 2333333 57654
Q ss_pred EEee-cCCCC-CceEEEEEEEcCC
Q 021911 279 EQVT-LEPFE-RDHACVVGGYRMP 300 (305)
Q Consensus 279 e~~~-l~p~~-~~~~~vv~~~~~~ 300 (305)
.... +.|+. ....+++++.++.
T Consensus 410 ~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 410 PPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred CCCCccCCCCCCCCcEEEEEEEeC
Confidence 3222 34543 3355566666554
No 8
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.84 E-value=5.3e-20 Score=177.03 Aligned_cols=167 Identities=25% Similarity=0.314 Sum_probs=131.6
Q ss_pred cccccCceEEEeC--Cccee-eec--cccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCE
Q 021911 72 EPHRHEGVFIAKG--KEDAL-VTK--NLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR 146 (305)
Q Consensus 72 ~~~~~~gv~~~~~--~~~~l-~t~--~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~ 146 (305)
+.+..+|+-+.+. .++.+ +.. ..+.....|.++.+.+||. .|++++.++ .+.++.+
T Consensus 180 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~-------------~s~~~~~~l------~~~~g~~ 240 (431)
T PRK14903 180 KILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGE-------------SSQIVPLLM------ELEPGLR 240 (431)
T ss_pred HHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECH-------------HHHHHHHHh------CCCCCCE
Confidence 3345566655554 23444 221 2245667899999999998 888888887 6888999
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ- 223 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~- 223 (305)
|||+|||+|.+|.++++.+++.++|+|+|+|+.+++.+.+++++. ++|++++.|++.+... ...+||+|++|+||
T Consensus 241 VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 241 VLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRILVDAPCT 318 (431)
T ss_pred EEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEEEECCCCC
Confidence 999999999999999999877889999999998887777777654 5789999999875422 24689999999996
Q ss_pred ------------------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 224 ------------------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 224 ------------------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
..|.++|. ++.++|||||+|+|+| |++...+++.++
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~-~a~~~LkpGG~LvYsT--Cs~~~eEne~vv 378 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVS-QAWKLLEKGGILLYST--CTVTKEENTEVV 378 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEE--CCCChhhCHHHH
Confidence 14778887 9999999999999999 777777777665
No 9
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.84 E-value=4.7e-20 Score=178.00 Aligned_cols=146 Identities=23% Similarity=0.212 Sum_probs=123.8
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.....|.++.+++||+ +|++++.+|. ..++++++|||+|||+|.+|+|+|+.+++.+.|+|+
T Consensus 82 ~~~~~~~~~G~~yvQd~-------------sS~l~~~~L~----~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~ 144 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEA-------------SSMLPVAALF----ADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVAN 144 (470)
T ss_pred cccChHHHCCcEEEECH-------------HHHHHHHHhc----cCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEE
Confidence 45677899999999998 9999988762 146899999999999999999999999888899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~ 227 (305)
|+++.++..+.+++++. .||.+...|.+.+... ....||.|++|+||. .|.
T Consensus 145 D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~ 222 (470)
T PRK11933 145 EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQR 222 (470)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHH
Confidence 99999888888887765 6888889998765432 246899999999953 488
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++|. +|.++|||||+|+||| |++...+|+.++
T Consensus 223 ~iL~-~A~~~LkpGG~LVYST--CT~~~eENE~vV 254 (470)
T PRK11933 223 ELIE-SAFHALKPGGTLVYST--CTLNREENQAVC 254 (470)
T ss_pred HHHH-HHHHHcCCCcEEEEEC--CCCCHHHHHHHH
Confidence 8998 9999999999999999 777777777665
No 10
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.84 E-value=2.5e-20 Score=168.63 Aligned_cols=143 Identities=24% Similarity=0.268 Sum_probs=119.9
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+...+.|.++.+++||. .|++++.++ .++++.+|||+|||+|.++.++++.+.+.+.|+++
T Consensus 42 ~~~~~~~~~G~~~~qd~-------------~s~~~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~ 102 (264)
T TIGR00446 42 IGSTPEYLSGLYYIQEA-------------SSMIPPLAL------EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVAN 102 (264)
T ss_pred cccChhHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEE
Confidence 56678899999999998 899888887 68899999999999999999999998777899999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~ 227 (305)
|+++.+++.+.+.++.. .+|++++.|++..... ...||+|++|+||. .|.
T Consensus 103 D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 179 (264)
T TIGR00446 103 EFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQK 179 (264)
T ss_pred cCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHH
Confidence 99998887777776654 5789999998765322 35699999999943 366
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++|. ++.++|||||+|+|+| |++...+++.++
T Consensus 180 ~iL~-~a~~~lkpgG~lvYst--cs~~~~Ene~vv 211 (264)
T TIGR00446 180 ELID-SAFDALKPGGVLVYST--CSLEPEENEAVV 211 (264)
T ss_pred HHHH-HHHHhcCCCCEEEEEe--CCCChHHHHHHH
Confidence 7887 9999999999999999 777777766554
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.81 E-value=1.2e-18 Score=168.56 Aligned_cols=164 Identities=28% Similarity=0.360 Sum_probs=126.3
Q ss_pred cccCceEEEeC--Cccee-eeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEE
Q 021911 74 HRHEGVFIAKG--KEDAL-VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYL 150 (305)
Q Consensus 74 ~~~~gv~~~~~--~~~~l-~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDl 150 (305)
+..+|+-+.+. .++.+ +....+.....|.++.+++||. .+++++.++ .+.++.+|||+
T Consensus 197 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~-------------~s~lv~~~l------~~~~g~~VLDl 257 (444)
T PRK14902 197 LEEEGYEVEESLLSPEALVIEKGNIAGTDLFKDGLITIQDE-------------SSMLVAPAL------DPKGGDTVLDA 257 (444)
T ss_pred HHHcCceeEEcCCCCCeEEEeCCCcccChHHhCceEEEECh-------------HHHHHHHHh------CCCCCCEEEEe
Confidence 34445544443 23344 3333466778999999999998 888888877 57788999999
Q ss_pred ecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh----
Q 021911 151 GAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP---- 224 (305)
Q Consensus 151 G~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~---- 224 (305)
|||+|.++.++++.+++.++|+++|+++.++..+.+++++. .+|.+++.|+...... ...+||+|++|+||.
T Consensus 258 gaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 258 CAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKILVDAPCSGLGV 335 (444)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEEEcCCCCCCee
Confidence 99999999999998866789999999998777777666654 5799999999775421 136899999999842
Q ss_pred ---------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh
Q 021911 225 ---------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA 261 (305)
Q Consensus 225 ---------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~ 261 (305)
.|.+++. ++.++|||||+|+|+| |++...+++.+
T Consensus 336 ~~~~p~~~~~~~~~~~~~l~~~q~~iL~-~a~~~LkpGG~lvyst--cs~~~~Ene~v 390 (444)
T PRK14902 336 IRRKPDIKYNKTKEDIESLQEIQLEILE-SVAQYLKKGGILVYST--CTIEKEENEEV 390 (444)
T ss_pred eccCcchhhcCCHHHHHHHHHHHHHHHH-HHHHHcCCCCEEEEEc--CCCChhhhHHH
Confidence 2456777 9999999999999999 77776666553
No 12
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.80 E-value=2.9e-18 Score=165.94 Aligned_cols=139 Identities=27% Similarity=0.295 Sum_probs=115.2
Q ss_pred ccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCC
Q 021911 98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS 177 (305)
Q Consensus 98 ~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s 177 (305)
.+.|.++.+++||+ .+.++..++ .+.++.+|||+|||+|.++.++++.+...++|+++|+|
T Consensus 224 ~~~~~~G~~~vqd~-------------~s~l~~~~l------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s 284 (445)
T PRK14904 224 EPFLKLGLVSVQNP-------------TQALACLLL------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRY 284 (445)
T ss_pred ChHHhCcEEEEeCH-------------HHHHHHHhc------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECC
Confidence 36899999999997 788888776 57789999999999999999999988667799999999
Q ss_pred hHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHHHHH
Q 021911 178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQARIL 230 (305)
Q Consensus 178 ~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~~~l 230 (305)
+.++..+.+.++.. .+|++++.|+....+ ..+||+|++|+||. .|.++|
T Consensus 285 ~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL 360 (445)
T PRK14904 285 PQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELL 360 (445)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHH
Confidence 98777776666554 578999999977542 35899999999851 356677
Q ss_pred HHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 231 ALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 231 ~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
. ++.++|||||+|+|+| |++...+|+.++
T Consensus 361 ~-~a~~~lkpgG~lvyst--cs~~~~Ene~~v 389 (445)
T PRK14904 361 D-HAASLLKPGGVLVYAT--CSIEPEENELQI 389 (445)
T ss_pred H-HHHHhcCCCcEEEEEe--CCCChhhHHHHH
Confidence 7 9999999999999999 777777776554
No 13
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.79 E-value=3.1e-18 Score=164.91 Aligned_cols=167 Identities=19% Similarity=0.202 Sum_probs=124.4
Q ss_pred cccccCceEEEeC--Cccee-ee-ccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEE
Q 021911 72 EPHRHEGVFIAKG--KEDAL-VT-KNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARV 147 (305)
Q Consensus 72 ~~~~~~gv~~~~~--~~~~l-~t-~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~V 147 (305)
+.+..+|+.+.+. .++++ +. ...+...+.|.++++++||. +|++++.++ .+.++.+|
T Consensus 182 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~-------------~s~~~~~~L------~~~~g~~V 242 (426)
T TIGR00563 182 ALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDA-------------SAQWVATWL------APQNEETI 242 (426)
T ss_pred HHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECH-------------HHHHHHHHh------CCCCCCeE
Confidence 3444555555443 23333 22 11255677899999999998 899988887 57889999
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeE--EEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVI--PIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~--~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
||+|||+|.++.++++.++ .++|+++|+++.++..+.+++++.. .+. ++..|....... ....+||+|++|+||.
T Consensus 243 LDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPcS 320 (426)
T TIGR00563 243 LDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRILLDAPCS 320 (426)
T ss_pred EEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEEEcCCCC
Confidence 9999999999999999875 6899999999988777776666541 233 355666543321 1246899999999842
Q ss_pred -------------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 225 -------------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 225 -------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
.|.++|. +++++|||||+|+|+| |++...+++.++
T Consensus 321 g~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~-~a~~~LkpgG~lvyst--cs~~~~Ene~~v 380 (426)
T TIGR00563 321 ATGVIRRHPDIKWLRKPRDIAELAELQSEILD-AIWPLLKTGGTLVYAT--CSVLPEENSEQI 380 (426)
T ss_pred CCcccccCcchhhcCCHHHHHHHHHHHHHHHH-HHHHhcCCCcEEEEEe--CCCChhhCHHHH
Confidence 2778887 9999999999999999 888888887765
No 14
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.78 E-value=2.3e-17 Score=158.93 Aligned_cols=144 Identities=25% Similarity=0.289 Sum_probs=116.1
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.....|.++.+++||. .|++++.++ .+.++.+|||+|||+|.++.++++.+. .++|+++
T Consensus 215 ~~~~~~~~~G~~~iQd~-------------~s~~~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~ 274 (427)
T PRK10901 215 VHQLPGFAEGWVSVQDA-------------AAQLAATLL------APQNGERVLDACAAPGGKTAHILELAP-QAQVVAL 274 (427)
T ss_pred cccCchhhCceEEEECH-------------HHHHHHHHc------CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEE
Confidence 45567899999999998 889998887 578899999999999999999999863 3799999
Q ss_pred eCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-------------------------hHHH
Q 021911 175 EFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP-------------------------DQAR 228 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~~ 228 (305)
|+|+.++..+.+.+++. .++.+++.|+..+... ....+||.|++|+||. .|.+
T Consensus 275 D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~ 353 (427)
T PRK10901 275 DIDAQRLERVRENLQRLGLKATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSE 353 (427)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHH
Confidence 99997777777666654 3578889999865321 1235799999999853 1456
Q ss_pred HHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 229 ILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 229 ~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++. ++.++|||||+|+|+| |++...+++.++
T Consensus 354 iL~-~a~~~LkpGG~lvyst--cs~~~~Ene~~v 384 (427)
T PRK10901 354 ILD-ALWPLLKPGGTLLYAT--CSILPEENEQQI 384 (427)
T ss_pred HHH-HHHHhcCCCCEEEEEe--CCCChhhCHHHH
Confidence 776 9999999999999999 777777777644
No 15
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.77 E-value=8.3e-19 Score=159.94 Aligned_cols=169 Identities=30% Similarity=0.359 Sum_probs=137.0
Q ss_pred ecccccCceEEEeC--Cccee---ee-ccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCC
Q 021911 71 VEPHRHEGVFIAKG--KEDAL---VT-KNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG 144 (305)
Q Consensus 71 ~~~~~~~gv~~~~~--~~~~l---~t-~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g 144 (305)
.+.+...|+-+.+. .++.+ .. ...+.....|.++.+.+||. +|++++.+| .+.++
T Consensus 26 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~-------------sS~l~~~~L------~~~~~ 86 (283)
T PF01189_consen 26 LEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDE-------------SSQLVALAL------DPQPG 86 (283)
T ss_dssp HHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHH-------------HHHHHHHHH------TTTTT
T ss_pred HHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEeccc-------------ccccccccc------ccccc
Confidence 34456667776653 34442 22 23355678899999999998 999999998 68999
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.|||+||++|++|.|+|+.+...+.|+|+|+++.++..+.+.+++. .+|..+..|++...... ....||.|++|+|
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~-~~~~fd~VlvDaP 165 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK-PESKFDRVLVDAP 165 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-HTTTEEEEEEECS
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-cccccchhhcCCC
Confidence 99999999999999999999988899999999999988888887765 68888888887764321 2346999999999
Q ss_pred Ch-------------------------hHHHHHHHHHhccC----CCCcEEEEEEcccccCCCCchhhh
Q 021911 223 QP-------------------------DQARILALNASYFL----KAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 223 ~~-------------------------~~~~~l~~~a~~~L----kpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
|. .|.++|. ++.++| ||||+|+|+| |++...+|+.++
T Consensus 166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~-~a~~~~~~~~k~gG~lvYsT--CS~~~eENE~vV 231 (283)
T PF01189_consen 166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILD-NAAKLLNIDFKPGGRLVYST--CSLSPEENEEVV 231 (283)
T ss_dssp CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHH-HHHHCEHHHBEEEEEEEEEE--SHHHGGGTHHHH
T ss_pred ccchhhhhhccchhhcccccccchHHHHHHHHHH-HHHHhhcccccCCCeEEEEe--ccHHHHHHHHHH
Confidence 42 4888998 999999 9999999999 888888887765
No 16
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.73 E-value=1.3e-17 Score=154.38 Aligned_cols=145 Identities=26% Similarity=0.305 Sum_probs=125.2
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
++....|.++...+|+. .|.|....| .++|+.+|||+||+||.+|+|+|..+...+.|||.
T Consensus 212 igat~e~lag~~~LQ~~-------------sS~Lpv~aL------~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~An 272 (460)
T KOG1122|consen 212 IGATPEYLAGHYMLQNA-------------SSFLPVMAL------DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFAN 272 (460)
T ss_pred cCCchhhcccceeeccC-------------cccceeeec------CCCCCCeecchhcCCCchHHHHHHHHcCCceEEec
Confidence 45667888999999997 888888887 79999999999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------------------------hhHH
Q 021911 175 EFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------------------------PDQA 227 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------------------------~~~~ 227 (305)
|.+..+++.+.+++... .|......|...++.-.+ ..+||.|++|+|| +.|.
T Consensus 273 D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr 351 (460)
T KOG1122|consen 273 DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQR 351 (460)
T ss_pred ccchHHHHHHHHHHHHhCCCceEEEccCccccccccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHH
Confidence 99998888888888765 677888889887653322 3489999999994 3588
Q ss_pred HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 228 RILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 228 ~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
++|. .|.+++++||+|+||| |+|...+|+++|
T Consensus 352 ~Lll-sAi~lv~~GGvLVYST--CSI~~~ENE~vV 383 (460)
T KOG1122|consen 352 ELLL-SAIDLVKAGGVLVYST--CSITVEENEAVV 383 (460)
T ss_pred HHHH-HHHhhccCCcEEEEEe--eecchhhhHHHH
Confidence 8887 9999999999999999 889999888776
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.64 E-value=1.2e-14 Score=128.64 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=84.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|.++..+++.+++.++|+++|+|+..++.+.+..+.. +++++++.|+.+.+. ...+||+|
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V 118 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF---DDNSFDYV 118 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC---CCCCccEE
Confidence 5778899999999999999999998877789999999996655554444332 579999999876542 24689999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.. .++..+++. ++.++|||||+|++.+
T Consensus 119 ~~~~~l~~~~~~~~~l~-~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLR-EMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEecccccCCCHHHHHH-HHHHHcCcCeEEEEEE
Confidence 98765 455667777 9999999999999876
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=1.3e-15 Score=134.43 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
.+.++.+|||+|||||-.+..+++.++ .++|+++|+|+ .|++.++++ .+|+++++|+.+++ +.+++
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~----~ML~~a~~k~~~~~~~~i~fv~~dAe~LP---f~D~s 119 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISE----SMLEVAREKLKKKGVQNVEFVVGDAENLP---FPDNS 119 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCH----HHHHHHHHHhhccCccceEEEEechhhCC---CCCCc
Confidence 355899999999999999999999987 88999999999 666666554 34999999999987 34789
Q ss_pred EeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+|.+... .++....|. +++|+|||||++++..
T Consensus 120 FD~vt~~fglrnv~d~~~aL~-E~~RVlKpgG~~~vle 156 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALK-EMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHH-HHHHhhcCCeEEEEEE
Confidence 999998776 567788888 9999999999988865
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=2.7e-15 Score=133.12 Aligned_cols=105 Identities=28% Similarity=0.354 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||||..+..+++.+++.++|+++|+|+.+++...+.++.. .+|+++++|+.+.+. .+++||+|
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~---~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF---PDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S----TT-EEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC---CCCceeEE
Confidence 4678899999999999999999999888899999999994444443333332 589999999988763 36899999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++... .+++.+.+. +++++|||||+|++..
T Consensus 121 ~~~fglrn~~d~~~~l~-E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 121 TCSFGLRNFPDRERALR-EMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEES-GGG-SSHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EHHhhHHhhCCHHHHHH-HHHHHcCCCeEEEEee
Confidence 98775 567888887 9999999999999865
No 20
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=5.9e-14 Score=126.81 Aligned_cols=106 Identities=25% Similarity=0.172 Sum_probs=83.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----CCCeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----~~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.+.++.+|||+|||+|.++..+++.+++.++|+++|+|+.+++.+.+.+.. .++|.+++.|+.+.+. ..++|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~---~~~sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF---DDCYF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC---CCCCE
Confidence 467789999999999999999998877778999999999544443322211 1479999999987642 35789
Q ss_pred eEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 215 DVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 215 D~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+|++... .++..+++. +++++|||||+|++.+.
T Consensus 147 D~V~~~~~l~~~~d~~~~l~-ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQ-EMYRVLKPGSRVSILDF 183 (261)
T ss_pred eEEEEecccccCCCHHHHHH-HHHHHcCcCcEEEEEEC
Confidence 99998665 457777887 99999999999999863
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=1.5e-14 Score=113.12 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=80.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC-CCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA-RHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~-~~~~~~~~~~~~fD~V~ 218 (305)
|+.+|||||||+|.++..+++.. +..+|++||+|+.+++.+.+.+.+. ++|.+++.|+ .... ....||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCEEE
Confidence 57899999999999999999954 5679999999998877777777332 7999999999 2222 246799999
Q ss_pred EeC-C----C--hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDV-A----Q--PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~-~----~--~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++. . . +++.+++. ++.+.|+|||+|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLE-RIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 987 2 2 24556666 9999999999999986
No 22
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=8.1e-14 Score=123.27 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=107.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+....+|||||||+|..++.+|.+.. ...|++||+++++...+.+..+.+ .+|++++.|+.+..+.. ...+||+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~-~~~~fD~ 118 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL-VFASFDL 118 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-cccccCE
Confidence 455589999999999999999999964 489999999995544444443333 68999999998876542 2347999
Q ss_pred EEEeCCC--------h-------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC
Q 021911 217 IFSDVAQ--------P-------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 217 V~~d~~~--------~-------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
|+||+|. + +...++. .+.++|||+|+|++.. +...+.+.++.|++.+|
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~-~a~~~lk~~G~l~~V~----------r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIR-AAAKLLKPGGRLAFVH----------RPERLAEIIELLKSYNL 187 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHH-HHHHHccCCCEEEEEe----------cHHHHHHHHHHHHhcCC
Confidence 9999991 1 2334444 7899999999999998 33445666788888899
Q ss_pred cEeEEeecCCCC--CceEEEEE
Q 021911 276 KPFEQVTLEPFE--RDHACVVG 295 (305)
Q Consensus 276 ~~~e~~~l~p~~--~~~~~vv~ 295 (305)
.+.++..+.|.. ..+.+++-
T Consensus 188 ~~k~i~~V~p~~~k~A~~vLv~ 209 (248)
T COG4123 188 EPKRIQFVYPKIGKAANRVLVE 209 (248)
T ss_pred CceEEEEecCCCCCcceEEEEE
Confidence 999988877754 34444443
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.56 E-value=2.2e-13 Score=116.90 Aligned_cols=138 Identities=20% Similarity=0.169 Sum_probs=97.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
++++.+|||+|||+|..+..++... +.++|+++|+|+.++..+.+.+++. +++++++.|+.+... ..+||+|+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~ 117 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVT 117 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEE
Confidence 4458999999999999999999864 5789999999996665555555444 569999999977542 46899999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHH-HHCCCcEeEEeec--CCCCCceEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL-QQDQFKPFEQVTL--EPFERDHACVVG 295 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l-~~~Gf~~~e~~~l--~p~~~~~~~vv~ 295 (305)
++.. .+...++. .+.++|||||+|++.... . +..++..+ +++|+.+.+++.+ +-......++|-
T Consensus 118 ~~~~-~~~~~~l~-~~~~~LkpGG~lv~~~~~-------~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
T PRK00107 118 SRAV-ASLSDLVE-LCLPLLKPGGRFLALKGR-------D----PEEEIAELPKALGGKVEEVIELTLPGLDGERHLVII 184 (187)
T ss_pred Eccc-cCHHHHHH-HHHHhcCCCeEEEEEeCC-------C----hHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEE
Confidence 9753 33445555 899999999999998621 1 12223333 5679998887644 444444444444
Q ss_pred E
Q 021911 296 G 296 (305)
Q Consensus 296 ~ 296 (305)
+
T Consensus 185 ~ 185 (187)
T PRK00107 185 R 185 (187)
T ss_pred e
Confidence 3
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.56 E-value=1.3e-13 Score=124.74 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=98.9
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.+.++.+|||+|||+|..+..++... .++|+++|+|+.++..+.+.+....+|.+++.|+...+ ....+||+|+
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~---~~~~~FD~V~ 122 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD---FPENTFDMIY 122 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC---CCCCCeEEEE
Confidence 367899999999999999999998764 46999999999554444443333357999999987543 2246899999
Q ss_pred EeCC---C--hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh------------hHHHHHHHHHHCCCcEeEEe
Q 021911 219 SDVA---Q--PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA------------VFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 219 ~d~~---~--~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~------------v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+... . .+...++. +++++|||||+|+++.............. -.....+.|+++||+.++..
T Consensus 123 s~~~l~h~~~~d~~~~l~-~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 123 SRDAILHLSYADKKKLFE-KCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred EhhhHHhCCHHHHHHHHH-HHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 8432 1 25666776 99999999999999863211111111100 01223466789999999988
Q ss_pred ecCCC
Q 021911 282 TLEPF 286 (305)
Q Consensus 282 ~l~p~ 286 (305)
++.++
T Consensus 202 d~~~~ 206 (263)
T PTZ00098 202 DISDY 206 (263)
T ss_pred eCcHH
Confidence 77665
No 25
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.56 E-value=7.9e-14 Score=124.16 Aligned_cols=132 Identities=30% Similarity=0.439 Sum_probs=98.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
++.||++|||.|+|+|.+|..||..+++.+.|+.+|+.+.+.+.+.++.+.. .||.+.+.|+............||.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 7999999999999999999999999999999999999997777666666554 5899999999653221112468999
Q ss_pred EEEeCCChhHHHHHHHHHhccC-CCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 217 IFSDVAQPDQARILALNASYFL-KAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~L-kpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
||+|+|.|+.. +. ++.+.| |+||+|++.. .| .+.+ .+.++.|++.||..++++++
T Consensus 117 vfLDlp~Pw~~--i~-~~~~~L~~~gG~i~~fs--P~------ieQv-~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 117 VFLDLPDPWEA--IP-HAKRALKKPGGRICCFS--PC------IEQV-QKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp EEEESSSGGGG--HH-HHHHHE-EEEEEEEEEE--SS------HHHH-HHHHHHHHHTTEEEEEEEEE
T ss_pred EEEeCCCHHHH--HH-HHHHHHhcCCceEEEEC--CC------HHHH-HHHHHHHHHCCCeeeEEEEE
Confidence 99999999865 44 788999 8999998887 34 2222 45578888899988776653
No 26
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=1.5e-13 Score=128.79 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=99.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||||||+|.++.++++.+ ..+|++||+|+.++..+.+.+++. ++|.+++.|+.+.+. ..++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~---~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF---EDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC---CCCCccEEE
Confidence 678899999999999999999985 369999999996666555555443 479999999977542 357999999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccc-cCCC---Cchh--hh---------------HHHHHHHHHHCC
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANC-IDST---VPAE--AV---------------FQSEVKKLQQDQ 274 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~---~~~~--~v---------------~~~~~~~l~~~G 274 (305)
+... .++..+.+. +++++|||||+|++++.... .... .... .+ ..+..+.+++.|
T Consensus 192 s~~~~~h~~d~~~~l~-e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 192 SMESGEHMPDKRKFVQ-ELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred ECCchhccCCHHHHHH-HHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 8655 456777777 99999999999999873111 1111 0000 00 112245668999
Q ss_pred CcEeEEeecCCC
Q 021911 275 FKPFEQVTLEPF 286 (305)
Q Consensus 275 f~~~e~~~l~p~ 286 (305)
|+.++..++..+
T Consensus 271 f~~v~~~d~s~~ 282 (340)
T PLN02244 271 LQDIKTEDWSEH 282 (340)
T ss_pred CCeeEeeeCcHH
Confidence 999888766543
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=2.3e-13 Score=116.36 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=91.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|||+|||+|..+..++.. .+.++|++||+|+.++..+.+.+++. +||++++.|+.+.. ...+||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~----~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ----HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----ccCCccEEEeh
Confidence 3789999999999999999865 35679999999996655544444433 57999999997752 24689999998
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
. ..+...++. .+.++|+|||.+++... .. .........+.+...||++++.-.+
T Consensus 117 ~-~~~~~~~~~-~~~~~LkpgG~lvi~~~------~~-~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 117 A-LASLNVLLE-LTLNLLKVGGYFLAYKG------KK-YLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred h-hhCHHHHHH-HHHHhcCCCCEEEEEcC------CC-cHHHHHHHHHhhhhcCceEeecccc
Confidence 7 444555665 78999999999998751 11 1222222235555679998876543
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=4.2e-14 Score=119.70 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=79.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..+..+|||+|||+|..+..++... +..+|+++|+|+.++..+.++++.+ .+++++..|+.+..+ ..+||+|+
T Consensus 29 ~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv 103 (170)
T PF05175_consen 29 KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIV 103 (170)
T ss_dssp HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEE
T ss_pred hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEE
Confidence 3377899999999999999999875 6668999999997776666666555 348999999876542 47999999
Q ss_pred EeCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|.. ...+++. .+.++|||+|.|++..
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~-~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIE-QARRYLKPGGRLFLVI 140 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred EccchhcccccchhhHHHHHH-HHHHhccCCCEEEEEe
Confidence 999932 2455565 8999999999998876
No 29
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.3e-14 Score=128.77 Aligned_cols=127 Identities=26% Similarity=0.293 Sum_probs=97.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccc------
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR------ 208 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~------ 208 (305)
.++|+++|||+||+||.+|..+.+.+.. .+.|+|-|+++.++..++..++.. +++.....|+...+...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 6899999999999999999999887642 348999999998888888887433 56666666665544321
Q ss_pred cCCCcEeEEEEeCCC--------------------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 209 MLVGMVDVIFSDVAQ--------------------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~--------------------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
....+||.|++|+|| ..|.+|+. +..++||+||+||||| |++...+++.++
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~-rgl~lLk~GG~lVYST--CSLnpieNEaVV 308 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILR-RGLRLLKVGGRLVYST--CSLNPIENEAVV 308 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHH-HHHHHhcCCCEEEEec--cCCCchhhHHHH
Confidence 134589999999994 25889998 9999999999999999 666666655544
Q ss_pred HHHHHHHH
Q 021911 263 FQSEVKKL 270 (305)
Q Consensus 263 ~~~~~~~l 270 (305)
...++.+
T Consensus 309 -~~~L~~~ 315 (375)
T KOG2198|consen 309 -QEALQKV 315 (375)
T ss_pred -HHHHHHh
Confidence 5555544
No 30
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.54 E-value=2.8e-13 Score=117.40 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=96.2
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
+.+.++.+|||+|||+|.++..++..+++.++|+++|+++.+++.+.+.++.. .++.++..|+.+.... ....||
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--~~~~~D 113 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--INEKFD 113 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--cCCCCC
Confidence 36788999999999999999999988766779999999997666555555443 4788888888654321 236899
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 277 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~ 277 (305)
+|+++....+...++. .+.++|||+|+|++.+ +. ...+.+....|++.||..
T Consensus 114 ~V~~~~~~~~~~~~l~-~~~~~LkpgG~lv~~~--~~-------~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 114 RIFIGGGSEKLKEIIS-ASWEIIKKGGRIVIDA--IL-------LETVNNALSALENIGFNL 165 (198)
T ss_pred EEEECCCcccHHHHHH-HHHHHcCCCcEEEEEe--ec-------HHHHHHHHHHHHHcCCCe
Confidence 9999877667777787 9999999999999865 11 112344456777888853
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.54 E-value=1.1e-13 Score=114.81 Aligned_cols=104 Identities=26% Similarity=0.350 Sum_probs=84.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.+.+|||+|||+|.++..+++.+.+..+|++||+|+.++..+.+.+++. +|+++++.|+.+.+.. ...+||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEE
Confidence 45789999999999999999976667789999999997666666655543 6899999999985432 1279999999
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+ .++...++. ++.++||++|.++++.
T Consensus 80 ~~~l~~~~~~~~~l~-~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLK-NIIRLLKPGGILIISD 110 (152)
T ss_dssp ESTGGGTSHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred cCchhhccCHHHHHH-HHHHHcCCCcEEEEEE
Confidence 876 456667777 9999999999999987
No 32
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.53 E-value=9e-14 Score=120.93 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=94.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccC-CCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA-RHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~-~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||+|||+|..+..+++.+ +..+|++||+|+.++..+.+.++.. +|+.+++.|+ ...+.. ....+||+|+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~D~V~ 116 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-FPDGSLDRIY 116 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-cCccccceEE
Confidence 367899999999999999999875 5678999999997766666555443 6899999998 443311 2346899999
Q ss_pred EeCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 219 SDVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 219 ~d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
++.+.+. +..++. +++++|||+|.|++++ +....+...++.+++.|+...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~-~i~~~LkpgG~l~i~~---------~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLA-LYARKLKPGGEIHFAT---------DWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EECCCCCCCccccccccCCHHHHH-HHHHHcCCCCEEEEEc---------CCHHHHHHHHHHHHhCccccc
Confidence 9876432 355666 9999999999999987 233445556677788887665
No 33
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=5.4e-13 Score=114.49 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=92.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..++... +..+|+++|+|+.++..+.+.+++. .++.+++.|+... ...+||+|
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~D~v 101 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-----LPGKADAI 101 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-----cCcCCCEE
Confidence 46678999999999999999999875 5679999999997666655555433 5788888887422 23589999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
+++.......+++. .+.+.|||||+|++... + ..-..+....+++.||+..+.
T Consensus 102 ~~~~~~~~~~~~l~-~~~~~Lk~gG~lv~~~~--~-------~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 102 FIGGSGGNLTAIID-WSLAHLHPGGRLVLTFI--L-------LENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred EECCCccCHHHHHH-HHHHhcCCCeEEEEEEe--c-------HhhHHHHHHHHHHCCCCcceE
Confidence 99876555556666 89999999999988751 1 011233356678889986664
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=7.4e-14 Score=125.65 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=87.7
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
+......++.. +.+.++.+|||+|||+|.++..+++.+ +..+|+++|+|+ .|++.+++ .++.+++.|+.+.
T Consensus 14 ~~~~~~~ll~~---l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~----~~~~~a~~-~~~~~~~~d~~~~ 84 (255)
T PRK14103 14 RGRPFYDLLAR---VGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSP----EMVAAARE-RGVDARTGDVRDW 84 (255)
T ss_pred hhCHHHHHHHh---CCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCH----HHHHHHHh-cCCcEEEcChhhC
Confidence 33444444433 346778999999999999999999986 567999999999 67777765 4789999998765
Q ss_pred cccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 205 AKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. ...+||+|+++.. .+++..++. ++++.|||||+|++.++
T Consensus 85 ~----~~~~fD~v~~~~~l~~~~d~~~~l~-~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 85 K----PKPDTDVVVSNAALQWVPEHADLLV-RWVDELAPGSWIAVQVP 127 (255)
T ss_pred C----CCCCceEEEEehhhhhCCCHHHHHH-HHHHhCCCCcEEEEEcC
Confidence 3 2468999999877 467777787 99999999999999753
No 35
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=3.1e-13 Score=121.63 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=99.8
Q ss_pred eeccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCc
Q 021911 90 VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG 169 (305)
Q Consensus 90 ~t~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~ 169 (305)
+.+++.+....|.+...+++.. . .+.+-..++++.++||++|||||||+|.++.++|+.+ ..
T Consensus 35 Ld~~~~Yscayf~~~~~tL~eA-------------Q---~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v 96 (283)
T COG2230 35 LDPSMTYSCAYFEDPDMTLEEA-------------Q---RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GV 96 (283)
T ss_pred cCCCCceeeEEeCCCCCChHHH-------------H---HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CC
Confidence 5677776666666665555442 1 1112122455689999999999999999999999997 46
Q ss_pred EEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCC
Q 021911 170 VVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAG 241 (305)
Q Consensus 170 ~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpG 241 (305)
+|++|++|+.......+.+++. .+|+++..|.+++. +.||.|++--. .......+. ++.++|+|+
T Consensus 97 ~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~-~~~~~L~~~ 169 (283)
T COG2230 97 TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFK-KVYALLKPG 169 (283)
T ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHH-HHHhhcCCC
Confidence 9999999996666666655555 48999999988774 45999998443 344556666 999999999
Q ss_pred cEEEEEE
Q 021911 242 GHFVISI 248 (305)
Q Consensus 242 G~lv~s~ 248 (305)
|.+++.+
T Consensus 170 G~~llh~ 176 (283)
T COG2230 170 GRMLLHS 176 (283)
T ss_pred ceEEEEE
Confidence 9999976
No 36
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.50 E-value=1.1e-12 Score=122.16 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=97.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||+|||+|.++..+++.+ +..+|+++|+|+ .+++.++++ .++.++..|+.+.+. ..++||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~----~mL~~A~~k~~~~~i~~i~gD~e~lp~---~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECKIIEGDAEDLPF---PTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCH----HHHHHHHHhhhccCCeEEeccHHhCCC---CCCceeEEE
Confidence 467899999999999999999876 346899999999 444444443 578899999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC-CC---chhh---hHHHHHHHHHHCCCcEeEEeecCCCC
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDS-TV---PAEA---VFQSEVKKLQQDQFKPFEQVTLEPFE 287 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~-~~---~~~~---v~~~~~~~l~~~Gf~~~e~~~l~p~~ 287 (305)
++.. .++..+++. ++.++|||||+|++......... .. +... ...+..+.|++.||+.+++.++.++.
T Consensus 184 s~~~L~~~~d~~~~L~-e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 184 SAGSIEYWPDPQRGIK-EAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred EcChhhhCCCHHHHHH-HHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 8654 456667777 99999999999988642111000 00 0000 11233577789999999988887764
No 37
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.50 E-value=3.9e-13 Score=117.56 Aligned_cols=114 Identities=28% Similarity=0.298 Sum_probs=83.9
Q ss_pred hhHHHHHHHccccccC-CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~-~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~ 203 (305)
++..+-.+++..+.+. ++++.+|||||||||.++..+++.+++.+.|++||+++ + ...++|+++++|+++
T Consensus 32 ~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~----~~~~~v~~i~~D~~~ 102 (209)
T PRK11188 32 RSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----M----DPIVGVDFLQGDFRD 102 (209)
T ss_pred chhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----c----cCCCCcEEEecCCCC
Confidence 4444444444333333 57889999999999999999999987778999999998 1 122679999999988
Q ss_pred Cccc-----ccCCCcEeEEEEeCCC-----h--hH-------HHHHHHHHhccCCCCcEEEEEE
Q 021911 204 PAKY-----RMLVGMVDVIFSDVAQ-----P--DQ-------ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 204 ~~~~-----~~~~~~fD~V~~d~~~-----~--~~-------~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .....+||+|++|++. + ++ ..++. ++.++|||||.|++.+
T Consensus 103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~-~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 103 ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALD-MCRDVLAPGGSFVVKV 165 (209)
T ss_pred hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHH-HHHHHcCCCCEEEEEE
Confidence 5311 1235689999998741 1 21 34555 8999999999999976
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.50 E-value=5e-13 Score=106.01 Aligned_cols=105 Identities=26% Similarity=0.352 Sum_probs=82.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..+++.+ +..+|+++|+|+.++..+.+.++.. ++++++..|+...... ...+||+|
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v 92 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--SLPEPDRV 92 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh--hcCCCCEE
Confidence 56677899999999999999999986 4579999999996666555554433 5788888887643221 23689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.+.....+++. ++.++|||+|+|++..
T Consensus 93 ~~~~~~~~~~~~l~-~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 93 FIGGSGGLLQEILE-AIWRRLRPGGRIVLNA 122 (124)
T ss_pred EECCcchhHHHHHH-HHHHHcCCCCEEEEEe
Confidence 99876555566776 9999999999999975
No 39
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.50 E-value=1.1e-12 Score=110.63 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=101.3
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCc
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
|..+.++|+++++|+|||+|+.+..+| +++|.++|||+|-++.+++....++++. +|++.+..|+.+..+. ...
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~---~~~ 102 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD---LPS 102 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC---CCC
Confidence 334469999999999999999999999 6789999999999997766555555544 8999999999776432 238
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC-cEeEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF-KPFEQ 280 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf-~~~e~ 280 (305)
+|+||..-. -....++. .+...|||||+|++.. . ..+.....++++++.|+ +++++
T Consensus 103 ~daiFIGGg-~~i~~ile-~~~~~l~~ggrlV~na--i-------tlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 103 PDAIFIGGG-GNIEEILE-AAWERLKPGGRLVANA--I-------TLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred CCEEEECCC-CCHHHHHH-HHHHHcCcCCeEEEEe--e-------cHHHHHHHHHHHHHcCCceEEEE
Confidence 999999888 66777777 9999999999999975 1 11223455688888999 55543
No 40
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.49 E-value=1.6e-12 Score=116.79 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=104.4
Q ss_pred cCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE
Q 021911 95 VAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (305)
Q Consensus 95 ~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av 174 (305)
+.++..|..-.+.+... .| ...+-...++..++..+. ...+..+|||+|||+|.++..++... +..+|+++
T Consensus 46 i~g~~~f~g~~~~v~~~-----vf-~pr~~Te~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~v 116 (251)
T TIGR03704 46 VLGWAEFCGLRIAVDPG-----VF-VPRRRTEFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAA 116 (251)
T ss_pred hcccCeEcCeEEEECCC-----Cc-CCCccHHHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEE
Confidence 34445555545555442 11 112224455555544322 11234689999999999999999875 45689999
Q ss_pred eCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh----------h-------------------
Q 021911 175 EFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP----------D------------------- 225 (305)
Q Consensus 175 D~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~----------~------------------- 225 (305)
|+|+.+++.+.++++. .++.+++.|+.+.... .....||+|++|+|.. +
T Consensus 117 Dis~~al~~A~~N~~~-~~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~ 194 (251)
T TIGR03704 117 DIDPAAVRCARRNLAD-AGGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDV 194 (251)
T ss_pred ECCHHHHHHHHHHHHH-cCCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHH
Confidence 9999666655555543 3468889998654321 1235799999999831 0
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 226 QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 226 ~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+.+++. ++.++|||+|+|++.+.. .. ..+....|++.+|+..-..
T Consensus 195 ~~~i~~-~a~~~L~~gG~l~l~~~~------~~----~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 195 LRRVAA-GAPDWLAPGGHLLVETSE------RQ----APLAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHH-HHHHhcCCCCEEEEEECc------ch----HHHHHHHHHHCCCCceeeE
Confidence 234555 889999999999998721 11 1233566778888876444
No 41
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.49 E-value=1.3e-12 Score=118.66 Aligned_cols=137 Identities=28% Similarity=0.340 Sum_probs=98.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|..+..++..+++.++|+++|+|+.+++.+.+..... +++.+++.|+...+. ....||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~---~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV---ADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC---CCCceeEE
Confidence 5678999999999999999988888877789999999996555554444332 588999999876542 24689999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh---------------hHHHHHHHHHHCCCcEeE
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA---------------VFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~---------------v~~~~~~~l~~~Gf~~~e 279 (305)
+++.. .++...++. ++.++|||||+|+++.... ....+... ...+..+.|++.||..++
T Consensus 151 i~~~v~~~~~d~~~~l~-~~~r~LkpGG~l~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 151 ISNCVINLSPDKERVFK-EAFRVLKPGGRFAISDVVL--RGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred EEcCcccCCCCHHHHHH-HHHHHcCCCcEEEEEEeec--cCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 98765 456667777 9999999999999975211 11111100 012234666888999877
Q ss_pred Eee
Q 021911 280 QVT 282 (305)
Q Consensus 280 ~~~ 282 (305)
+..
T Consensus 228 i~~ 230 (272)
T PRK11873 228 IQP 230 (272)
T ss_pred EEe
Confidence 644
No 42
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=2.4e-13 Score=122.33 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=87.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
+.+..++. .+.+.++.+|||+|||+|.++..+++.+ +..+|++||+|+ .+++.++++ +++.++..|+....
T Consensus 18 ~~~~~ll~---~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~----~~i~~a~~~~~~~~~~~~d~~~~~ 89 (258)
T PRK01683 18 RPARDLLA---RVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSP----AMLAEARSRLPDCQFVEADIASWQ 89 (258)
T ss_pred cHHHHHHh---hCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCH----HHHHHHHHhCCCCeEEECchhccC
Confidence 34555543 3356778999999999999999999886 567999999999 666666655 67999999987653
Q ss_pred ccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 206 KYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ..+||+|+++.. .+++..++. ++.+.|||||.|++++
T Consensus 90 ~----~~~fD~v~~~~~l~~~~d~~~~l~-~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 P----PQALDLIFANASLQWLPDHLELFP-RLVSLLAPGGVLAVQM 130 (258)
T ss_pred C----CCCccEEEEccChhhCCCHHHHHH-HHHHhcCCCcEEEEEC
Confidence 2 358999999877 356777777 9999999999999976
No 43
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=7.4e-13 Score=116.46 Aligned_cols=126 Identities=29% Similarity=0.381 Sum_probs=100.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.|+++|||.|+|+|.++..||..+++.++|+.+|+.+.+++.+.++.++- ++|.+...|+.+... ...||+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~----~~~vDa 166 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID----EEDVDA 166 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc----ccccCE
Confidence 6899999999999999999999999999999999999996666666666553 458888999987753 349999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
|++|+|.|+.. +. ++...|||||.+++.. .|+ + -..+.++.|++.||.-++.+
T Consensus 167 v~LDmp~PW~~--le-~~~~~Lkpgg~~~~y~--P~v------e-Qv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 167 VFLDLPDPWNV--LE-HVSDALKPGGVVVVYS--PTV------E-QVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEEcCCChHHH--HH-HHHHHhCCCcEEEEEc--CCH------H-HHHHHHHHHHhcCccchhhh
Confidence 99999988744 55 8999999999999887 231 1 22445677777777765543
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.48 E-value=5.7e-13 Score=120.89 Aligned_cols=104 Identities=23% Similarity=0.317 Sum_probs=75.6
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCC
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~ 212 (305)
++++.++|+++|||||||+|.++.++|+..+ ++|++|.+|+...+.+.+.+++. .+|++.+.|.++.+ .
T Consensus 55 ~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~ 126 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------G 126 (273)
T ss_dssp HTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------C
Confidence 4556899999999999999999999999974 69999999997777776666665 46899999987653 4
Q ss_pred cEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+||.|++--. ..+....+. ++.++|||||.+++.+
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~-~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFR-KISRLLKPGGRLVLQT 166 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHH-HHHHHSETTEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHH-HHHHhcCCCcEEEEEe
Confidence 9999998433 245566666 9999999999999865
No 45
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.47 E-value=4.4e-13 Score=115.86 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=92.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
....+|||||||+|.++..+|... +...|++||+++.+++.+.+.+.+. .||.+++.|+.+..........+|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 345799999999999999999875 6789999999997766666555543 6899999999765432122458999999
Q ss_pred eCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC-CcEeE
Q 021911 220 DVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ-FKPFE 279 (305)
Q Consensus 220 d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G-f~~~e 279 (305)
+.|.|. +.+++. .++++|||||.|++++ +....+...++.+.+.+ |+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~-~~~r~LkpgG~l~~~t---------d~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLK-EYANVLKKGGVIHFKT---------DNEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHH-HHHHHhCCCCEEEEEe---------CCHHHHHHHHHHHHhCCCeEecc
Confidence 987542 135665 8999999999999987 12233444455665554 66543
No 46
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.47 E-value=1.8e-12 Score=110.36 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
...-.++||+||+.|.+|..||.++. .++++|+|+.++....+..+..++|.+++.|+.... +.++||+|++.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~----P~~~FDLIV~S 113 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEFW----PEGRFDLIVLS 113 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-------SS-EEEEEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC----CCCCeeEEEEe
Confidence 34457999999999999999999963 899999999776666666665589999999997764 35799999875
Q ss_pred CC-----Ch-hHHHHHHHHHhccCCCCcEEEEEEc--ccccCCCCchhhhH-HHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 221 VA-----QP-DQARILALNASYFLKAGGHFVISIK--ANCIDSTVPAEAVF-QSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 221 ~~-----~~-~~~~~l~~~a~~~LkpGG~lv~s~~--~~~i~~~~~~~~v~-~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
.. .. +....+. ++...|+|||.||+.+. ..|..+. ..| ++.+..+-++-|..++.+...-...+.-
T Consensus 114 EVlYYL~~~~~L~~~l~-~l~~~L~pgG~LV~g~~rd~~c~~wg----h~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~ 188 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALD-RLVAALAPGGHLVFGHARDANCRRWG----HAAGAETVLEMLQEHLTEVERVECRGGSPNED 188 (201)
T ss_dssp S-GGGSSSHHHHHHHHH-HHHHTEEEEEEEEEEEE-HHHHHHTT-----S--HHHHHHHHHHHSEEEEEEEEE-SSTTSE
T ss_pred hHhHcCCCHHHHHHHHH-HHHHHhCCCCEEEEEEecCCcccccC----cccchHHHHHHHHHHhhheeEEEEcCCCCCCc
Confidence 54 22 3444555 89999999999999873 1231111 011 1223333334488888888888888889
Q ss_pred EEEEEEcCCCCC
Q 021911 292 CVVGGYRMPKKQ 303 (305)
Q Consensus 292 ~vv~~~~~~~~~ 303 (305)
+++++++++...
T Consensus 189 ~~~~~~~~~~~~ 200 (201)
T PF05401_consen 189 CLLARFRNPVSA 200 (201)
T ss_dssp EEEEEEE--SSS
T ss_pred eEeeeecCCcCC
Confidence 999999987643
No 47
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.47 E-value=1.4e-12 Score=126.36 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=106.8
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCC
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~ 203 (305)
..+...++..+ .+.++.+|||+|||+|.++..+|+.. .+|+++|+|+.+++.+.++++.. .|+.+++.|+.+
T Consensus 283 e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 283 QKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 34555554433 45678999999999999999999874 48999999997777776666544 579999999865
Q ss_pred Ccc-cccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 204 PAK-YRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 204 ~~~-~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
... ......+||+|++|+|.....+.+. .+.+ |+|.+.+++|. ....++..+..|.+.||++.++..
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~-~l~~-~~~~~ivyvSC----------np~tlaRDl~~L~~~gY~l~~i~~ 424 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPRAGAAEVMQ-ALAK-LGPKRIVYVSC----------NPATLARDAGVLVEAGYRLKRAGM 424 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCCcChHHHHH-HHHh-cCCCeEEEEEe----------ChHHhhccHHHHhhCCcEEEEEEE
Confidence 421 1112357999999999654444553 4444 68988877774 123356677888888999999888
Q ss_pred cCCCCCceE
Q 021911 283 LEPFERDHA 291 (305)
Q Consensus 283 l~p~~~~~~ 291 (305)
++.|.+.+.
T Consensus 425 ~DmFP~T~H 433 (443)
T PRK13168 425 LDMFPHTGH 433 (443)
T ss_pred eccCCCCCc
Confidence 887776443
No 48
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.46 E-value=7.3e-13 Score=116.24 Aligned_cols=111 Identities=27% Similarity=0.378 Sum_probs=84.8
Q ss_pred HHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCc
Q 021911 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPA 205 (305)
Q Consensus 128 l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~ 205 (305)
+.+.+++.+ .++++.+|||+|||+|.++..+++.+++.++|++||+++..+..+.+.+++. +|+++++.|+....
T Consensus 65 ~~~~~~~~l---~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELL---ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHh---CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 444444433 5788999999999999999999999876778999999996665555555443 58999999987643
Q ss_pred ccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 206 KYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ..+||+|+++.+.+.... .+.+.|||||+|++.+
T Consensus 142 ~~---~~~fD~Ii~~~~~~~~~~----~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EP---LAPYDRIYVTAAGPKIPE----ALIDQLKEGGILVMPV 177 (215)
T ss_pred cc---cCCCCEEEEcCCcccccH----HHHHhcCcCcEEEEEE
Confidence 21 358999999887654432 4557899999999986
No 49
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.44 E-value=7.4e-12 Score=118.64 Aligned_cols=155 Identities=21% Similarity=0.184 Sum_probs=101.8
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccC
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDA 201 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~ 201 (305)
|....++..++. .+.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+.++++.. .++.+++.|+
T Consensus 236 peTE~LVe~aL~-----~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl 309 (423)
T PRK14966 236 PETEHLVEAVLA-----RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSW 309 (423)
T ss_pred ccHHHHHHHhhh-----ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch
Confidence 344556666653 23456799999999999999998764 5679999999997766666665543 4799999998
Q ss_pred CCCcccccCCCcEeEEEEeCCC----------------h------------hHHHHHHHHHhccCCCCcEEEEEEccccc
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQ----------------P------------DQARILALNASYFLKAGGHFVISIKANCI 253 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~----------------~------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i 253 (305)
.+.... ...+||+|++|+|. | ...+++. ++.++|+|+|++++.+..
T Consensus 310 ~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~-~a~~~LkpgG~lilEiG~--- 383 (423)
T PRK14966 310 FDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQ-GAPDRLAEGGFLLLEHGF--- 383 (423)
T ss_pred hccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHH-HHHHhcCCCcEEEEEECc---
Confidence 654211 13579999999982 0 1223444 788999999999987611
Q ss_pred CCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEc
Q 021911 254 DSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 298 (305)
Q Consensus 254 ~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~ 298 (305)
...+ ...+.+++.||..++.. -+-..++.+ +++++.
T Consensus 384 ---~Q~e----~V~~ll~~~Gf~~v~v~-kDl~G~dR~-v~~~~~ 419 (423)
T PRK14966 384 ---DQGA----AVRGVLAENGFSGVETL-PDLAGLDRV-TLGKYM 419 (423)
T ss_pred ---cHHH----HHHHHHHHCCCcEEEEE-EcCCCCcEE-EEEEEh
Confidence 1111 22345567888866543 222333444 445543
No 50
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=1.5e-12 Score=114.01 Aligned_cols=112 Identities=29% Similarity=0.329 Sum_probs=84.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.++..+ .++++.+|||+|||+|..+..+++.+++.++|+++|+++..++.+.+.+++. .||.+++.|+...
T Consensus 63 ~~~~~~~~~l---~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELL---DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHc---CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 4445554433 5788999999999999999999999877789999999996655555444433 5899999998765
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ....||+|+++...+...+ .+.+.|||||+|++..
T Consensus 140 ~~---~~~~fD~I~~~~~~~~~~~----~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YE---ENAPYDRIYVTAAGPDIPK----PLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC---cCCCcCEEEECCCcccchH----HHHHhhCCCcEEEEEE
Confidence 32 2368999999877654443 4456899999999975
No 51
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.43 E-value=5.7e-13 Score=100.32 Aligned_cols=92 Identities=23% Similarity=0.258 Sum_probs=70.8
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC---Ch
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---QP 224 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~ 224 (305)
||+|||+|.++..+++. +..+|+++|+|+.+++.+.+.... .++.+++.|+.+.+ +.+++||+|++... .+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP---FPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS---S-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc---cccccccccccccceeecc
Confidence 89999999999999998 567999999999544444443332 56779999998874 23689999999666 35
Q ss_pred hHHHHHHHHHhccCCCCcEEEE
Q 021911 225 DQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
++.+++. ++.++|||||++++
T Consensus 75 ~~~~~l~-e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALR-EIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHH-HHHHHEEEEEEEEE
T ss_pred CHHHHHH-HHHHHcCcCeEEeC
Confidence 7777777 99999999999986
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.43 E-value=8.9e-12 Score=106.16 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=91.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||+|||+|.++..++... + +|+++|+|+.+++.+.+.++.. .+++++..|+.... ..+||+|++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~fD~Vi~ 88 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-----RGKFDVILF 88 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----CCcccEEEE
Confidence 4456799999999999999999873 2 8999999996665555544433 46888888986542 358999999
Q ss_pred eCCCh---h---------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC
Q 021911 220 DVAQP---D---------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 220 d~~~~---~---------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
++|.. + ...++. ++.++|||||.+++.+ .+.. +. .+.+..|++.||
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~Lk~gG~~~~~~--~~~~---~~----~~~~~~l~~~gf 158 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLD-ELPEILKEGGRVQLIQ--SSLN---GE----PDTFDKLDERGF 158 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHH-hHHHhhCCCCEEEEEE--eccC---Ch----HHHHHHHHhCCC
Confidence 98831 0 233454 8999999999999987 2211 11 223577788999
Q ss_pred cEeEEeecCCC
Q 021911 276 KPFEQVTLEPF 286 (305)
Q Consensus 276 ~~~e~~~l~p~ 286 (305)
+.+.+....-+
T Consensus 159 ~~~~~~~~~~~ 169 (179)
T TIGR00537 159 RYEIVAERGLF 169 (179)
T ss_pred eEEEEEEeecC
Confidence 88876654333
No 53
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.43 E-value=4.6e-12 Score=123.83 Aligned_cols=137 Identities=21% Similarity=0.196 Sum_probs=95.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|..+..+++.+ ..+|+++|+|+.++..+.+.+... .++.+++.|+...+. ...+||+|+
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I~ 337 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTY---PDNSFDVIY 337 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCC---CCCCEEEEE
Confidence 45778899999999999999999875 468999999995544443333222 478999999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh-h----------HHHHHHHHHHCCCcEeEEee
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA-V----------FQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~-v----------~~~~~~~l~~~Gf~~~e~~~ 282 (305)
+... .++...++. +++++|||||+|++++............. . .....+.|+++||+.++..+
T Consensus 338 s~~~l~h~~d~~~~l~-~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 338 SRDTILHIQDKPALFR-SFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred ECCcccccCCHHHHHH-HHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 9644 456777777 99999999999999873211111111110 1 11224667889999886654
No 54
>PRK08317 hypothetical protein; Provisional
Probab=99.42 E-value=9.1e-12 Score=109.76 Aligned_cols=105 Identities=30% Similarity=0.330 Sum_probs=82.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-cCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.++..+++.+++.++|+++|+|+..+..+.+... ...++.+++.|+...+. ....||+|+
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~ 92 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF---PDGSFDAVR 92 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC---CCCCceEEE
Confidence 57788999999999999999999987667899999999954444333311 12578999999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++.. .+++..++. ++.++|||||+|+++.
T Consensus 93 ~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 93 SDRVLQHLEDPARALA-EIARVLRPGGRVVVLD 124 (241)
T ss_pred EechhhccCCHHHHHH-HHHHHhcCCcEEEEEe
Confidence 8765 356777776 9999999999999876
No 55
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=4.2e-12 Score=109.96 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=75.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..++.+|||+|||+|..+.+||+. ..+|+++|+|+.+++.+.+.++.. .+|.+++.|+...+ ...+||+|+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~ 100 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT----FDGEYDFIL 100 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC----cCCCcCEEE
Confidence 456689999999999999999986 248999999996666555544443 56888999987653 235799999
Q ss_pred EeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA----QP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+... .+ +...++. ++.++|||||++++.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~-~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIA-NMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCHHHHHHHHH-HHHHHcCCCcEEEEEE
Confidence 8765 22 3455555 9999999999976644
No 56
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=1.1e-12 Score=117.51 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=83.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
..+..++..| ...+..+|||+|||+|.++..++.. ..+|+++|+|+ .+++.++++ ..+.+++.|+...+
T Consensus 29 ~~a~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~----~~l~~a~~~~~~~~~~~~d~~~~~ 98 (251)
T PRK10258 29 QSADALLAML---PQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSP----PMLAQARQKDAADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHhc---CccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCH----HHHHHHHhhCCCCCEEEcCcccCc
Confidence 3444444433 3345689999999999999998875 35899999999 666666654 34678889987754
Q ss_pred ccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 206 KYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. ...+||+|+++.+ .++...++. ++.++|||||.|++++.
T Consensus 99 ~---~~~~fD~V~s~~~l~~~~d~~~~l~-~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 99 L---ATATFDLAWSNLAVQWCGNLSTALR-ELYRVVRPGGVVAFTTL 141 (251)
T ss_pred C---CCCcEEEEEECchhhhcCCHHHHHH-HHHHHcCCCeEEEEEeC
Confidence 2 3468999999877 456777787 99999999999999974
No 57
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=3.2e-12 Score=111.40 Aligned_cols=102 Identities=22% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++++.+|||+|||+|..+..+++.+++.++|+++|+++..+..+.+.+++. .++++++.|+....+. ..+||+
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~---~~~fD~ 145 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK---HAPFDA 145 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc---CCCccE
Confidence 4678899999999999999999998866779999999996655554444433 3589999998764322 368999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+++.+..... . ++.+.|||||+|++..
T Consensus 146 Ii~~~~~~~~~---~-~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIP---S-ALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhh---H-HHHHhcCcCcEEEEEE
Confidence 99988754333 2 5568999999999876
No 58
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.41 E-value=6.2e-13 Score=104.86 Aligned_cols=101 Identities=26% Similarity=0.252 Sum_probs=76.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
|.+|||+|||+|.++.++++.. ..+++++|+++.++.-+...+... .++.+++.|+.+.... ....+||+|++|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEEC
Confidence 4689999999999999999885 569999999996555444444433 5799999999776522 235799999999
Q ss_pred CCCh-----------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQP-----------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~-----------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|.. ...+++. ++.++|||+|.+++.+
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~-~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLE-AAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHH-HHHHHcCCCeEEEEEe
Confidence 9932 2345565 9999999999999987
No 59
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=5e-12 Score=111.56 Aligned_cols=102 Identities=25% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|.++..++.. ...+|+++|+|+.++..+.++++.. .++.+++.|+.... ...+||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~----~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV----EFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc----cCCCeeEEE
Confidence 4677899999999999999999876 3358999999996655544444432 35788888886532 246899999
Q ss_pred EeCCCh---h---------------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP---D---------------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~---~---------------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|.. . ...++. ++.++|||||+|++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCD-AAPALLAPGGSLLLVQ 159 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 998721 1 234455 8899999999999876
No 60
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.41 E-value=5.9e-12 Score=108.14 Aligned_cols=99 Identities=35% Similarity=0.355 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-----ccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-----~~~~~~f 214 (305)
.++++.+|||+|||+|.++.++++.+.+.++|+++|+|+. + ..+++.+++.|+.+.... ......|
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~----~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM----K-----PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc----c-----cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 4678999999999999999999998766678999999983 2 236789999998764311 1124579
Q ss_pred eEEEEeCCCh--------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP--------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~--------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+++.+.+ ++..++. ++.++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALD-IAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHH-HHHHHccCCCEEEEEE
Confidence 9999986411 1345665 8999999999999975
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=3.1e-12 Score=115.11 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=78.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|.++..+++. ..+|+++|+|+.++..+.+.++.. +++++++.|+.+.... ...+||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--LETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--cCCCCCEEE
Confidence 45689999999999999999987 258999999996655555544433 5789999998765422 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+... .+++..++. ++.++|||||+|++..
T Consensus 118 ~~~vl~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADPKSVLQ-TLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCHHHHHH-HHHHHcCCCeEEEEEE
Confidence 8766 345667777 9999999999998864
No 62
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.41 E-value=2.9e-13 Score=115.73 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=96.5
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~ 203 (305)
++.-+..++ +++.+.+-.+|.|||||+|+.|..|++++ |...|+++|.|+ +|++.|+.+ +++.|..+|+.+
T Consensus 15 RtRPa~dLl---a~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~----~Mla~Aa~rlp~~~f~~aDl~~ 86 (257)
T COG4106 15 RTRPARDLL---ARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSP----AMLAKAAQRLPDATFEEADLRT 86 (257)
T ss_pred ccCcHHHHH---hhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCH----HHHHHHHHhCCCCceecccHhh
Confidence 334444443 44467778999999999999999999998 688999999999 888888877 899999999998
Q ss_pred CcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccc
Q 021911 204 PAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIKANC 252 (305)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~ 252 (305)
+.+ ...+|+|++|+. .|+..++|. .....|.|||.|.+..+.+.
T Consensus 87 w~p----~~~~dllfaNAvlqWlpdH~~ll~-rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 87 WKP----EQPTDLLFANAVLQWLPDHPELLP-RLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cCC----CCccchhhhhhhhhhccccHHHHH-HHHHhhCCCceEEEECCCcc
Confidence 864 368999999998 578888887 88899999999999985443
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.41 E-value=9.4e-12 Score=117.46 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=78.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
......+|||||||+|..+..+++.. |..+|++||+|+.+++.+.++++.+ .+++++..|+.... ...+|
T Consensus 225 p~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~----~~~~f 299 (378)
T PRK15001 225 PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRF 299 (378)
T ss_pred CcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----CCCCE
Confidence 34445799999999999999999885 6789999999997666665555433 25788888875432 13589
Q ss_pred eEEEEeCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+||+|.. ...+++. .+.++|||||.|+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~-~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFH-HARRCLKINGELYIVA 340 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHH-HHHHhcccCCEEEEEE
Confidence 9999999932 2345565 8999999999999996
No 64
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.40 E-value=9.6e-13 Score=114.78 Aligned_cols=112 Identities=29% Similarity=0.368 Sum_probs=81.7
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.+++.| .++|+++|||||||+|+.+..||.++++.+.|++||.++.......+..+.. .||.+++.|....
T Consensus 59 ~~~a~~l~~L---~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 59 SMVARMLEAL---DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHT---TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHH---hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 4566665555 5899999999999999999999999988889999999994443333333321 5899999998665
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+. ..+||+|++..+.+.....+. +.||+||+|++..
T Consensus 136 ~~~---~apfD~I~v~~a~~~ip~~l~----~qL~~gGrLV~pi 172 (209)
T PF01135_consen 136 WPE---EAPFDRIIVTAAVPEIPEALL----EQLKPGGRLVAPI 172 (209)
T ss_dssp TGG---G-SEEEEEESSBBSS--HHHH----HTEEEEEEEEEEE
T ss_pred ccc---CCCcCEEEEeeccchHHHHHH----HhcCCCcEEEEEE
Confidence 432 368999999988776554444 6899999999987
No 65
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=1.4e-11 Score=109.92 Aligned_cols=140 Identities=26% Similarity=0.270 Sum_probs=96.8
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.|....+...++..+. ....+|||+|||+|.++..++..+ +...|+++|+|+.+++.+.+.++.. .++.+++.
T Consensus 70 ~~~~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 70 RPDTEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred CCChHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3444555555554332 234699999999999999999875 5679999999997766665555543 47999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCCh----------h-------------------HHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQP----------D-------------------QARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~----------~-------------------~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
|+.+.. ...+||+|++|+|.. + ...++. ++.++|+|+|.+++.+..
T Consensus 145 d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~-~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 145 DWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIA-QAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred chhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHH-HHHHhcccCCEEEEEECc
Confidence 987642 246899999998821 0 113444 899999999999998611
Q ss_pred cccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 251 NCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 251 ~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
.. .....+.|++.+|+.++..
T Consensus 220 ------~~----~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 220 ------DQ----GEAVRALFEAAGFADVETR 240 (251)
T ss_pred ------cH----HHHHHHHHHhCCCCceEEE
Confidence 11 1222455677899866543
No 66
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=3.2e-12 Score=109.59 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
-+..++||||||.|..+..||+. ...|+|+|+|+.+++.+.+.+++. -+|...+.|+.+.. ....||+|++.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~----~~~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD----FPEEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----TTTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc----ccCCcCEEEEE
Confidence 34579999999999999999998 358999999999988888887765 46899999987764 24689999985
Q ss_pred CC----Chh-HHHHHHHHHhccCCCCcEEEEEEc
Q 021911 221 VA----QPD-QARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 221 ~~----~~~-~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.. .++ ..+++. ++...++|||++++.+.
T Consensus 102 ~v~~fL~~~~~~~i~~-~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIE-NMKAATKPGGYNLIVTF 134 (192)
T ss_dssp SSGGGS-GGGHHHHHH-HHHHTEEEEEEEEEEEE
T ss_pred EEeccCCHHHHHHHHH-HHHhhcCCcEEEEEEEe
Confidence 44 344 444555 99999999999998663
No 67
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=1e-11 Score=115.50 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=95.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH---cCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~---~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
+.++.+|||||||+|.++..++.. + ...|+++|+|+..+.......+ ...+|.++..|+.+.+. ..+||+|
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----~~~FD~V 193 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----LKAFDTV 193 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----cCCcCEE
Confidence 346789999999999999999987 3 3479999999965543222221 12579999999877642 4689999
Q ss_pred EEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCC-----chh-------h----hHHHHHHHHHHCCCcEe
Q 021911 218 FSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTV-----PAE-------A----VFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 218 ~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~-----~~~-------~----v~~~~~~~l~~~Gf~~~ 278 (305)
+|... ..+....+. ++++.|||||.|++++. .++... +.. . -......+|+++||+.+
T Consensus 194 ~s~~vl~H~~dp~~~L~-~l~~~LkpGG~lvl~~~--~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLK-QLKDQLVPGGELVLETL--VIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred EECChhhccCCHHHHHH-HHHHhcCCCcEEEEEEE--EecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 98544 345667777 99999999999999752 111100 000 0 11233577899999999
Q ss_pred EEeecCC
Q 021911 279 EQVTLEP 285 (305)
Q Consensus 279 e~~~l~p 285 (305)
++++..+
T Consensus 271 ~~~~~~~ 277 (322)
T PRK15068 271 RIVDVSV 277 (322)
T ss_pred EEEeCCC
Confidence 8887655
No 68
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=3.3e-11 Score=109.23 Aligned_cols=151 Identities=25% Similarity=0.244 Sum_probs=100.9
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-c-CCCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-K-RTNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-~-~~nI~~~~~ 199 (305)
.|....++..++.. ....+..+|||+|||+|..+..++..+ +..+|+++|+|+.+++.+.+.+. . ..++.+++.
T Consensus 90 r~~te~l~~~~~~~---~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~ 165 (275)
T PRK09328 90 RPETEELVEWALEA---LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQG 165 (275)
T ss_pred CCCcHHHHHHHHHh---ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc
Confidence 34444555555422 234567899999999999999999986 56799999999977666555554 1 157999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCCh-----------------------------hHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQP-----------------------------DQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~-----------------------------~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
|+..... ..+||+|++|+|.. ....++. ++.++|||||++++.+..
T Consensus 166 d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~-~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 166 DWFEPLP----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIE-QAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred cccCcCC----CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHH-HHHHhcccCCEEEEEECc
Confidence 9865431 36899999998821 1233444 788999999999997610
Q ss_pred cccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEE
Q 021911 251 NCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHAC 292 (305)
Q Consensus 251 ~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~ 292 (305)
.. .....+.+++.||..++.. .+...++.++
T Consensus 241 -------~~---~~~~~~~l~~~gf~~v~~~-~d~~~~~r~~ 271 (275)
T PRK09328 241 -------DQ---GEAVRALLAAAGFADVETR-KDLAGRDRVV 271 (275)
T ss_pred -------hH---HHHHHHHHHhCCCceeEEe-cCCCCCceEE
Confidence 11 1122345567899855543 2333344443
No 69
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.39 E-value=1.7e-11 Score=110.10 Aligned_cols=133 Identities=19% Similarity=0.215 Sum_probs=88.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.++.+|||+|||+|..+..++.. + ...|+++|+|+.+++.+.++++.+ ++. +....... ..+||+|+++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~~~~---~~~fD~Vvan 186 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELN-GVE----LNVYLPQG---DLKADVIVAN 186 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEEccC---CCCcCEEEEc
Confidence 467899999999999988877664 3 347999999996666555555443 221 00001100 1279999999
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
........++. ++.++|||||+|+++.. . . .........+++.||++.+... ..++..+++++
T Consensus 187 i~~~~~~~l~~-~~~~~LkpgG~lilsgi--~--~-----~~~~~v~~~l~~~Gf~~~~~~~----~~~W~~~~~~~ 249 (250)
T PRK00517 187 ILANPLLELAP-DLARLLKPGGRLILSGI--L--E-----EQADEVLEAYEEAGFTLDEVLE----RGEWVALVGKK 249 (250)
T ss_pred CcHHHHHHHHH-HHHHhcCCCcEEEEEEC--c--H-----hhHHHHHHHHHHCCCEEEEEEE----eCCEEEEEEEe
Confidence 87655556665 89999999999999861 1 0 0112234667889999887654 34456666654
No 70
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.39 E-value=7.8e-12 Score=115.88 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++.+|||||||+|.++..++.. ..+|++||+|+.+++.+.+.+... .+|.+++.|+.+.+. ...+||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~---~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD---EGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh---ccCCCCEEE
Confidence 46789999999999999999864 358999999995554444333322 379999999876542 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .++...++. ++.++|||||.|++++.
T Consensus 204 ~~~vLeHv~d~~~~L~-~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVANPAEFCK-SLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcCCHHHHHH-HHHHHcCCCcEEEEEEC
Confidence 8554 346667777 99999999999999974
No 71
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=4.8e-12 Score=113.44 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=78.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.++.+|||+|||+|..+..++..+ .+..+|++||+|+.+++.+.+.+... .++.+++.|+.+.+ ...+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-----IENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----CCCCCE
Confidence 4678999999999999999998854 36789999999996655555544432 47999999987653 245899
Q ss_pred EEEeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 217 IFSDVA----QP-DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 217 V~~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+++.. .+ +...++. ++++.|||||.|+++.+
T Consensus 129 vv~~~~l~~l~~~~~~~~l~-~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLD-KIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHHHhCCHHHHHHHHH-HHHHhcCCCCEEEEEEe
Confidence 998654 22 3455665 99999999999999873
No 72
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.39 E-value=1e-11 Score=114.60 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=93.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH---cCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~---~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..++.. + ...|++||+|+.++..+....+ ...++.++..|+.+.+. ..+||+
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~----~~~FD~ 191 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE----LYAFDT 191 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC----CCCcCE
Confidence 4566899999999999999888876 2 3479999999965443222111 12567888888766543 248999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCc----hhh--------h----HHHHHHHHHHCCCcE
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVP----AEA--------V----FQSEVKKLQQDQFKP 277 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~----~~~--------v----~~~~~~~l~~~Gf~~ 277 (305)
|+|... .++....|. ++++.|||||.|++++. .++...+ +.. . ......+|++.||+.
T Consensus 192 V~s~gvL~H~~dp~~~L~-el~r~LkpGG~Lvletl--~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLK-QLKHQLVIKGELVLETL--VIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred EEEcchhhccCCHHHHHH-HHHHhcCCCCEEEEEEE--EecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 998665 356667777 99999999999999862 1211110 000 0 122246778999999
Q ss_pred eEEeecCC
Q 021911 278 FEQVTLEP 285 (305)
Q Consensus 278 ~e~~~l~p 285 (305)
++++....
T Consensus 269 V~i~~~~~ 276 (314)
T TIGR00452 269 FRILDVLK 276 (314)
T ss_pred EEEEeccC
Confidence 98876544
No 73
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.38 E-value=1.2e-11 Score=107.02 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=89.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+.++.+|||+|||+|.++..++... +.++|+++|+|+.++..+.+++++. .++++++.|+..... .....+|.|
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA--QLAPAPDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh--hCCCCCCEE
Confidence 56788999999999999999998764 5679999999997766666555443 579999999854321 122356888
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
+++... ....++. ++.++|+|||+|++.+. . ........+..+.++..+++++++
T Consensus 114 ~~~~~~-~~~~~l~-~~~~~LkpgG~li~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 114 CIEGGR-PIKEILQ-AVWQYLKPGGRLVATAS--S----LEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred EEECCc-CHHHHHH-HHHHhcCCCeEEEEEee--c----HHHHHHHHHHHHhcCCCCceEEEE
Confidence 776543 3345665 89999999999999872 1 111111223334444556776664
No 74
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=1.7e-11 Score=109.23 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=78.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.++.+|||+|||+|..+..+++.+. +.++|+++|+|+.++..+.+.++.. .++.+++.|+.+.+ ...+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----CCCCCE
Confidence 45788999999999999999998753 5789999999995555544444332 46899999998764 235888
Q ss_pred EEEeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA----QP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++..+ .+ +...++. ++++.|||||.|+++.
T Consensus 126 v~~~~~l~~~~~~~~~~~l~-~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLT-KIYEGLNPNGVLVLSE 161 (239)
T ss_pred EeeecchhhCCHHHHHHHHH-HHHHhcCCCeEEEEee
Confidence 888655 22 3455565 9999999999999986
No 75
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=3.9e-12 Score=112.30 Aligned_cols=116 Identities=25% Similarity=0.271 Sum_probs=85.9
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR 202 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~ 202 (305)
...++..++..+.........+|||+|||+|.++.++++.. +..+|+++|+|+. +++.++.+ +++.+++.|+.
T Consensus 16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~----~~~~~~~~~~~~~~~~~~d~~ 90 (240)
T TIGR02072 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAG----MLAQAKTKLSENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHH----HHHHHHHhcCCCCeEEecchh
Confidence 44455555554443332345799999999999999999985 5668999999994 44444433 47899999987
Q ss_pred CCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 203 HPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+.+. ...+||+|+++.. ..+...++. ++.++|||+|.|++++.
T Consensus 91 ~~~~---~~~~fD~vi~~~~l~~~~~~~~~l~-~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 91 KLPL---EDSSFDLIVSNLALQWCDDLSQALS-ELARVLKPGGLLAFSTF 136 (240)
T ss_pred hCCC---CCCceeEEEEhhhhhhccCHHHHHH-HHHHHcCCCcEEEEEeC
Confidence 6542 2468999999776 235666776 99999999999999873
No 76
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.36 E-value=3.5e-11 Score=109.99 Aligned_cols=101 Identities=25% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|.++..++... +..+|+++|+|+.+++.+.++++.. .+|.+++.|+.+.. ...+||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~----~~~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL----PGRKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----CCCCccEEE
Confidence 345799999999999999999875 5679999999997766666666544 46899999986532 134799999
Q ss_pred EeCCCh----------------------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP----------------------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~----------------------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|.. ....++. ++.++|+|||+|++.+
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~-~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILA-EAADHLNENGVLVVEV 251 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 998821 1234454 8999999999999987
No 77
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.35 E-value=8.1e-12 Score=109.43 Aligned_cols=106 Identities=20% Similarity=0.134 Sum_probs=86.9
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCC-----cEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccc
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPN-----GVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYR 208 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~-----~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~ 208 (305)
+.+.++++|||++||||-.+.-+.+.+... .+|+.+|+|++++....+.++++ ..+.+++.|+.+++
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp--- 172 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP--- 172 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---
Confidence 367788999999999999999999998542 79999999996555555555443 34899999999887
Q ss_pred cCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 209 MLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 209 ~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+.+||...+... +++..+.|. +|+++|||||+|.+..
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~-EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALR-EAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHH-HHHHhcCCCcEEEEEE
Confidence 34689999987665 778888888 9999999999998765
No 78
>PRK14968 putative methyltransferase; Provisional
Probab=99.35 E-value=6.5e-11 Score=100.93 Aligned_cols=124 Identities=23% Similarity=0.205 Sum_probs=87.8
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC--eEEEEccCCCCcccccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN--VIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n--I~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
..++.+|||+|||+|.++..++.. ..+|+++|+|+.++..+.+.+... .+ +.+++.|+.+.. ....||+
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~d~ 93 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----RGDKFDV 93 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----cccCceE
Confidence 467789999999999999999987 368999999996665555544433 23 888899986643 2348999
Q ss_pred EEEeCCChh------------------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH
Q 021911 217 IFSDVAQPD------------------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ 272 (305)
Q Consensus 217 V~~d~~~~~------------------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~ 272 (305)
|++++|... ...++. ++.++|||+|.+++.+. +.. .. ....+.+.+
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~Lk~gG~~~~~~~--~~~---~~----~~l~~~~~~ 163 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLD-EVGRYLKPGGRILLLQS--SLT---GE----DEVLEYLEK 163 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHH-HHHHhcCCCeEEEEEEc--ccC---CH----HHHHHHHHH
Confidence 999877211 223454 89999999999988762 211 11 223466788
Q ss_pred CCCcEeEEe
Q 021911 273 DQFKPFEQV 281 (305)
Q Consensus 273 ~Gf~~~e~~ 281 (305)
.||++....
T Consensus 164 ~g~~~~~~~ 172 (188)
T PRK14968 164 LGFEAEVVA 172 (188)
T ss_pred CCCeeeeee
Confidence 899876544
No 79
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.3e-12 Score=108.69 Aligned_cols=105 Identities=30% Similarity=0.393 Sum_probs=85.0
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIED 200 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D 200 (305)
.+++.+++.| .++++++|||||||+|+.+..||++++ +|+++|..+ .+.+.|+++ .||.+++.|
T Consensus 59 ~~vA~m~~~L---~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~----~L~~~A~~~L~~lg~~nV~v~~gD 128 (209)
T COG2518 59 HMVARMLQLL---ELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIE----ELAEQARRNLETLGYENVTVRHGD 128 (209)
T ss_pred HHHHHHHHHh---CCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcH----HHHHHHHHHHHHcCCCceEEEECC
Confidence 3555665544 589999999999999999999999975 999999999 555555443 689999999
Q ss_pred CCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...-.+. ..+||+|++..+.+...+.|. +.||+||+|++-+
T Consensus 129 G~~G~~~---~aPyD~I~Vtaaa~~vP~~Ll----~QL~~gGrlv~Pv 169 (209)
T COG2518 129 GSKGWPE---EAPYDRIIVTAAAPEVPEALL----DQLKPGGRLVIPV 169 (209)
T ss_pred cccCCCC---CCCcCEEEEeeccCCCCHHHH----HhcccCCEEEEEE
Confidence 8765432 479999999999877766665 7999999999987
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.35 E-value=3.6e-11 Score=110.18 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||+|.++..++.. ...+|+++|+|+.++..+.+++..+ .++..+..|.... ...+||+|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-----~~~~fDlV 229 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-----IEGKADVI 229 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-----cCCCceEE
Confidence 456799999999999999888765 3458999999997766666555543 2355555553221 24689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
+++........++. ++.++|||||+|+++... . .. .....+.+++. |++.+....
T Consensus 230 van~~~~~l~~ll~-~~~~~LkpgG~li~sgi~----~-~~----~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 230 VANILAEVIKELYP-QFSRLVKPGGWLILSGIL----E-TQ----AQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred EEecCHHHHHHHHH-HHHHHcCCCcEEEEEeCc----H-hH----HHHHHHHHHcc-CceeeEecc
Confidence 99987665556666 899999999999998611 1 01 12223445555 887766543
No 81
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.35 E-value=5e-11 Score=105.32 Aligned_cols=105 Identities=25% Similarity=0.279 Sum_probs=81.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...++.+|||+|||+|.++..++..+....+|+++|+++..++.+.+.+.. ..++.++..|+..... ....||+
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~ 124 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF---PDNSFDA 124 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC---CCCCccE
Confidence 355778999999999999999999874367999999999666555555433 2568899999877542 2468999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++... .++...++. ++.++|+|+|.+++..
T Consensus 125 I~~~~~l~~~~~~~~~l~-~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALR-EMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEecccccCCCHHHHHH-HHHHhccCCcEEEEEE
Confidence 998554 345666776 9999999999998875
No 82
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.34 E-value=7.4e-11 Score=107.91 Aligned_cols=117 Identities=26% Similarity=0.251 Sum_probs=84.3
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEcc
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIED 200 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D 200 (305)
....++..++..+. ...+..+|||+|||+|..+..++... +..+|+++|+|+.++..+.++++.. .++.+++.|
T Consensus 97 ete~lv~~~l~~~~--~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 97 ETEELVEKALASLI--SQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred ccHHHHHHHHHHhh--hcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 34555555543221 12233699999999999999999885 4579999999997766666665543 249999999
Q ss_pred CCCCcccccCCCcEeEEEEeCCC----------------h------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQ----------------P------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~----------------~------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+.. ...+||+|++|+|. | ....++. ++.++|+|||+|++.+
T Consensus 174 ~~~~~----~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~-~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 174 LFEPL----AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIE-LAPDYLKPNGFLVCEI 244 (284)
T ss_pred hhccC----cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHH-HHHHhccCCCEEEEEE
Confidence 86542 12389999999881 1 2334555 8999999999999987
No 83
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.3e-11 Score=110.52 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=94.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEE-EEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP-IIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~-~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+++.+|||+|||||.++..+++. ....|+|+|++|.+++...+++..+ +|.. +..-....... ....+||+|++
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~~~~~~~~-~~~~~~DvIVA 235 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLN-GVELLVQAKGFLLLEV-PENGPFDVIVA 235 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHc-CCchhhhcccccchhh-cccCcccEEEe
Confidence 458899999999999999998887 4568999999998888888877765 3332 11111111111 11259999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
|....- ...|...+.++|||||++++|= |..+. .+ ...+.+.+.||++.++... .+++.+++++
T Consensus 236 NILA~v-l~~La~~~~~~lkpgg~lIlSG----Il~~q-~~----~V~~a~~~~gf~v~~~~~~----~eW~~i~~kr 299 (300)
T COG2264 236 NILAEV-LVELAPDIKRLLKPGGRLILSG----ILEDQ-AE----SVAEAYEQAGFEVVEVLER----EEWVAIVGKR 299 (300)
T ss_pred hhhHHH-HHHHHHHHHHHcCCCceEEEEe----ehHhH-HH----HHHHHHHhCCCeEeEEEec----CCEEEEEEEc
Confidence 995443 3344458999999999999985 21111 11 2246667889999988754 4456666654
No 84
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.34 E-value=2.3e-11 Score=107.00 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=93.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
++|||+|||+|.++..+++.+ +..+|+++|+|+..+..+.+..+.. .++.++..|+...+. ..+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCCEeehHH
Confidence 379999999999999999886 4579999999995555444444332 578999999865421 35899999744
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCc-----hhh-hHHHHHHHHHHCCCcEeEEeecCCC
Q 021911 222 A---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVP-----AEA-VFQSEVKKLQQDQFKPFEQVTLEPF 286 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~-----~~~-v~~~~~~~l~~~Gf~~~e~~~l~p~ 286 (305)
. .++...++. ++.++|||||+|+++........... ... ...+..+.+.+.||++++..++.+.
T Consensus 76 ~l~~~~~~~~~l~-~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 76 VIHHIKDKMDLFS-NISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHhCCCHHHHHH-HHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 3 345667776 99999999999999863211110000 000 1122345668899999988876553
No 85
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.34 E-value=1.1e-11 Score=119.71 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcc-cccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAK-YRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~-~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.++..+|+.. ..|+++|+++.+++.+.++++.. .|+++++.|+.+..+ ......+||+
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~ 365 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDV 365 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence 45677899999999999999999874 38999999998777777666554 689999999865321 1112357999
Q ss_pred EEEeCCChh-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 217 IFSDVAQPD-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 217 V~~d~~~~~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
|++|+|... ...++. .+. .|+|++.+++| | ++ ..++..+..|.+.||++..+..++.|...+.
T Consensus 366 vi~dPPr~G~~~~~l~-~l~-~l~~~~ivyvs----c-----~p-~tlard~~~l~~~gy~~~~~~~~DmFP~T~H 429 (431)
T TIGR00479 366 LLLDPPRKGCAAEVLR-TII-ELKPERIVYVS----C-----NP-ATLARDLEFLCKEGYGITWVQPVDMFPHTAH 429 (431)
T ss_pred EEECcCCCCCCHHHHH-HHH-hcCCCEEEEEc----C-----CH-HHHHHHHHHHHHCCeeEEEEEEeccCCCCCC
Confidence 999999644 344443 333 48898766665 3 22 2356667788888999998888877766543
No 86
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.34 E-value=1.6e-11 Score=106.13 Aligned_cols=100 Identities=23% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+.+..+|||+|||+|..+..+|+. ..+|+++|+|+.++..+.+.++.. -++.+.+.|+...+ ...+||+|++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~~ 100 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA----LNEDYDFIFS 100 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc----ccCCCCEEEE
Confidence 445679999999999999999986 258999999996666555554432 24677777875433 2358999998
Q ss_pred eCCC-----hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ-----PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+. .+...++. ++.++|||||++++.+
T Consensus 101 ~~~~~~~~~~~~~~~l~-~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIA-NMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHHHHH-HHHHHhCCCcEEEEEE
Confidence 7652 23455665 9999999999976654
No 87
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.34 E-value=5.1e-12 Score=97.39 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=67.1
Q ss_pred EEEEecCCCccHHHHHhhh--CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC-
Q 021911 147 VLYLGAASGTTVSHVSDIV--GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA- 222 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~--~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~- 222 (305)
|||+|||+|..+..+++.+ ++..++++||+|+.++..+.+..+.. .++++++.|+.+.+.. .++||+|++...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~---~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS---DGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH---SSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc---CCCeeEEEEcCCc
Confidence 7999999999999999987 33469999999996555555444433 5899999999886533 579999999432
Q ss_pred ----ChhHHHHHHHHHhccCCCCc
Q 021911 223 ----QPDQARILALNASYFLKAGG 242 (305)
Q Consensus 223 ----~~~~~~~l~~~a~~~LkpGG 242 (305)
.+++.+.+..++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44455555559999999987
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.33 E-value=1.5e-11 Score=115.89 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=86.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
....+..+||||||+|.++.++|... |...++|+|+++.++..+.+.+... +||.+++.|+...... ...+++|.|
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I 196 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKI 196 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEE
Confidence 34456799999999999999999986 7789999999998887777777665 6999999999764322 345799999
Q ss_pred EEeCCChh---------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPD---------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~---------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.|.|+ +...+. .++++|+|||.+.+.|
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~-e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLN-EALRVLKPGGTLELRT 235 (390)
T ss_pred EEeCCCCccccchhhccHHHHHH-HHHHHcCCCcEEEEEE
Confidence 99988664 245565 8999999999999998
No 89
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.33 E-value=2.1e-11 Score=100.98 Aligned_cols=95 Identities=32% Similarity=0.422 Sum_probs=73.7
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..++.+|||+|||+|.++..+++. + .+|+++|+|+ .+++. .++.....+...... ...+||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~----~~~~~----~~~~~~~~~~~~~~~---~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISP----QMIEK----RNVVFDNFDAQDPPF---PDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSH----HHHHH----TTSEEEEEECHTHHC---HSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCH----HHHhh----hhhhhhhhhhhhhhc---cccchhhHhhH
Confidence 567899999999999999999776 2 3999999999 44444 345555554443322 35799999997
Q ss_pred CC---ChhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 221 VA---QPDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
.. .++...+|. ++.++|||||+++++++.
T Consensus 86 ~~l~~~~d~~~~l~-~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 86 DVLEHLPDPEEFLK-ELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSGGGSSHHHHHHH-HHHHCEEEEEEEEEEEEB
T ss_pred HHHhhcccHHHHHH-HHHHhcCCCCEEEEEEcC
Confidence 76 567777887 999999999999999854
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.33 E-value=1.5e-11 Score=114.72 Aligned_cols=136 Identities=16% Similarity=0.089 Sum_probs=96.4
Q ss_pred hhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccC
Q 021911 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA 201 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~ 201 (305)
....++..++... .++++.+|||+|||+|+++..++.. ...|+++|+++.+++.+..+++.. .++.+++.|+
T Consensus 166 l~~~la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~ 239 (329)
T TIGR01177 166 MDPKLARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA 239 (329)
T ss_pred CCHHHHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch
Confidence 3445666655322 4678999999999999998887664 358999999997766655555443 4688899999
Q ss_pred CCCcccccCCCcEeEEEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHH
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQ------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKK 269 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~ 269 (305)
++.+.. ..+||+|++|+|. ..+.+++. ++.++|||||++++.++... . ..+.
T Consensus 240 ~~l~~~---~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~-~~~r~Lk~gG~lv~~~~~~~------~------~~~~ 303 (329)
T TIGR01177 240 TKLPLS---SESVDAIATDPPYGRSTTAAGDGLESLYERSLE-EFHEVLKSEGWIVYAVPTRI------D------LESL 303 (329)
T ss_pred hcCCcc---cCCCCEEEECCCCcCcccccCCchHHHHHHHHH-HHHHHccCCcEEEEEEcCCC------C------HHHH
Confidence 876432 4689999999982 11456666 89999999999999873210 0 1234
Q ss_pred HHHCCCcEeEEee
Q 021911 270 LQQDQFKPFEQVT 282 (305)
Q Consensus 270 l~~~Gf~~~e~~~ 282 (305)
+++.|| ++....
T Consensus 304 ~~~~g~-i~~~~~ 315 (329)
T TIGR01177 304 AEDAFR-VVKRFE 315 (329)
T ss_pred HhhcCc-chheee
Confidence 577888 665543
No 91
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4e-12 Score=114.84 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=80.7
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcE
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
+++...+..+|||+|||.|..++.+++.. |..+|+-+|+|.++++...++++.+ ++.+++..|..... .++|
T Consensus 152 ~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kf 225 (300)
T COG2813 152 ETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKF 225 (300)
T ss_pred HhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccc
Confidence 33355666699999999999999999986 6789999999997776666666655 44445556654432 3499
Q ss_pred eEEEEeCCCh--------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP--------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~--------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+||+|.. .-.+++. .|.++|++||.|.++.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~-~A~~~L~~gGeL~iVa 266 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIA-AAARHLKPGGELWIVA 266 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHH-HHHHhhccCCEEEEEE
Confidence 9999999932 1235665 9999999999999998
No 92
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1e-10 Score=106.57 Aligned_cols=115 Identities=29% Similarity=0.338 Sum_probs=82.7
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEcc
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIED 200 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D 200 (305)
|....|+..++..+. ..+. +|||+|||||..++.++... +..+|+|+|+|+.++.-+.++++.. .++.+++.|
T Consensus 94 ~dTe~Lve~~l~~~~---~~~~-~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d 168 (280)
T COG2890 94 PDTELLVEAALALLL---QLDK-RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD 168 (280)
T ss_pred CchHHHHHHHHHhhh---hcCC-cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee
Confidence 335566666542121 1111 89999999999999999986 5679999999997766666666654 456666667
Q ss_pred CCCCcccccCCCcEeEEEEeCCC----------------h------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVAQ----------------P------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~~----------------~------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.... ..+||+|++|+|. | ...+++. ++..+|+|+|.+++.+
T Consensus 169 lf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~-~a~~~l~~~g~l~le~ 238 (280)
T COG2890 169 LFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILG-EAPDILKPGGVLILEI 238 (280)
T ss_pred ccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHH-hhHHHcCCCcEEEEEE
Confidence 65543 3599999999991 0 2344454 8999999999999987
No 93
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.33 E-value=3.3e-11 Score=110.16 Aligned_cols=134 Identities=18% Similarity=0.250 Sum_probs=93.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||||.+++..+.. ...+|+|+|+++.+++.+.++++.+ .++.. ....+. ...+||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~-----~~~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDL-----VEGKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCT-----CCS-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEeccc-----ccccCCEE
Confidence 567899999999999999988886 3568999999998888888888776 33332 211111 23799999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
++|....-...++. .+.++|+|+|+|++|=- ... ... ...+.+++ ||++.+... ..++..++++|
T Consensus 230 vANI~~~vL~~l~~-~~~~~l~~~G~lIlSGI----l~~-~~~----~v~~a~~~-g~~~~~~~~----~~~W~~l~~~K 294 (295)
T PF06325_consen 230 VANILADVLLELAP-DIASLLKPGGYLILSGI----LEE-QED----EVIEAYKQ-GFELVEERE----EGEWVALVFKK 294 (295)
T ss_dssp EEES-HHHHHHHHH-HCHHHEEEEEEEEEEEE----EGG-GHH----HHHHHHHT-TEEEEEEEE----ETTEEEEEEEE
T ss_pred EECCCHHHHHHHHH-HHHHhhCCCCEEEEccc----cHH-HHH----HHHHHHHC-CCEEEEEEE----ECCEEEEEEEe
Confidence 99999777777776 88899999999999851 111 111 12345555 999887764 35566677766
Q ss_pred c
Q 021911 298 R 298 (305)
Q Consensus 298 ~ 298 (305)
+
T Consensus 295 k 295 (295)
T PF06325_consen 295 K 295 (295)
T ss_dssp -
T ss_pred C
Confidence 4
No 94
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=2.7e-11 Score=115.37 Aligned_cols=104 Identities=17% Similarity=0.026 Sum_probs=77.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccc-ccCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~-~~~~~~fD~ 216 (305)
.++.+|||+|||+|.++.+++.. ...+|++||+|+.++..+.++++.+ .+++++++|+.+.... .....+||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 45789999999999998876643 4558999999998877766666654 2689999999765321 111358999
Q ss_pred EEEeCCC--h----------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQ--P----------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~--~----------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++|+|. . ...+++. .+.++|+|||.|++++
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~-~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINM-LAIQLLNPGGILLTFS 339 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHH-HHHHHcCCCeEEEEEe
Confidence 9999993 1 1223333 6889999999999887
No 95
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.32 E-value=1.8e-11 Score=113.55 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=92.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|||+|||+|.++..+|+. ..+|+++|+|+.+++.+.+.++.. +|+++++.|+.+.... ....||+|++|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--QGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--cCCCCeEEEEC
Confidence 4689999999999999999985 258999999998877777666554 5799999999765321 23479999999
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
+|.......+. .+...++|...+++| |-..+ ++..+..| .+|++.+...++.|...+.
T Consensus 248 PPr~G~~~~~~-~~l~~~~~~~ivyvs----c~p~t------~~rd~~~l--~~y~~~~~~~~DmFP~T~H 305 (315)
T PRK03522 248 PPRRGIGKELC-DYLSQMAPRFILYSS----CNAQT------MAKDLAHL--PGYRIERVQLFDMFPHTAH 305 (315)
T ss_pred CCCCCccHHHH-HHHHHcCCCeEEEEE----CCccc------chhHHhhc--cCcEEEEEEEeccCCCCCe
Confidence 99554333333 333446777555555 32222 34445556 5899998887777776444
No 96
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.32 E-value=7.4e-11 Score=103.12 Aligned_cols=105 Identities=21% Similarity=0.181 Sum_probs=79.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
...++.+|||+|||+|.++..++..+....+++++|+++..+..+.+......++.++..|+.+.+. ..+.||+|++
T Consensus 36 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~i~~ 112 (223)
T TIGR01934 36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF---EDNSFDAVTI 112 (223)
T ss_pred ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC---CCCcEEEEEE
Confidence 3457899999999999999999998743368999999995544444433322578999999877542 2468999988
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
... .++...++. ++.++|+|||+|++..
T Consensus 113 ~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 113 AFGLRNVTDIQKALR-EMYRVLKPGGRLVILE 143 (223)
T ss_pred eeeeCCcccHHHHHH-HHHHHcCCCcEEEEEE
Confidence 654 345556666 9999999999999875
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.31 E-value=8.4e-11 Score=110.06 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
....+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.++.+ ....++..|+... ..+.||+|++|
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-----~~~~fDlIvsN 268 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-----IKGRFDMIISN 268 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-----cCCCccEEEEC
Confidence 345689999999999999999874 5678999999997766665555544 2345666776542 24689999999
Q ss_pred CCCh-------hH-HHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQP-------DQ-ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~-------~~-~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|.. .. .+++. ++.++|||||.|+++.
T Consensus 269 PPFH~g~~~~~~~~~~~i~-~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIR-GAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccCCccccHHHHHHHHH-HHHHhcCcCCEEEEEE
Confidence 9832 22 44454 9999999999999987
No 98
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.5e-11 Score=102.28 Aligned_cols=157 Identities=27% Similarity=0.279 Sum_probs=104.8
Q ss_pred hhhHHHHHHHcccccc-CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC
Q 021911 124 FRSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR 202 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~-~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~ 202 (305)
|+|..+-.+++..++. .+++++.|+||||+||.++..+++.+++...|++||+.| .+..++|.+++.|++
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~ 95 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDIT 95 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeecc
Confidence 4777777777655544 457789999999999999999999998888899999998 233368999999998
Q ss_pred CCcccc-----cCCCcEeEEEEeCCC-------hhHHHH------HHHHHhccCCCCcEEEEEEcccccCCCCchhhhHH
Q 021911 203 HPAKYR-----MLVGMVDVIFSDVAQ-------PDQARI------LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQ 264 (305)
Q Consensus 203 ~~~~~~-----~~~~~fD~V~~d~~~-------~~~~~~------l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~ 264 (305)
...... .....+|+|++|++. .|+.+. ...-+..+|+|+|.+++.+. ...+..
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f-----qg~~~~---- 166 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF-----QGEDFE---- 166 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE-----eCCCHH----
Confidence 876432 122458999999983 122222 22246679999999999862 122222
Q ss_pred HHHHHHHHCCCcEeEEeecCCC--CCceEEEEEEEcC
Q 021911 265 SEVKKLQQDQFKPFEQVTLEPF--ERDHACVVGGYRM 299 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e~~~l~p~--~~~~~~vv~~~~~ 299 (305)
+.+..+++. |+.++....... +....++++...+
T Consensus 167 ~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~ 202 (205)
T COG0293 167 DLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFK 202 (205)
T ss_pred HHHHHHHHh-hceeEEecCccccCCCceEEEEEeccc
Confidence 223444433 666655432221 2235666666544
No 99
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=7.2e-11 Score=103.46 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=86.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------------CCCeEEEEccCCCCcc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPAK 206 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------------~~nI~~~~~D~~~~~~ 206 (305)
+.++.+|||+|||.|..+..||++ ...|+|||+|+.+++.+.+.+.. ..+|+++++|+.++..
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 356789999999999999999986 35899999999777754332211 1468899999987653
Q ss_pred cccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccc-cCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 207 YRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANC-IDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
. ....||.|+.... .+++...+..++.++|||||++++.+.... .....++..+-.+++..+-...|++...
T Consensus 109 ~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~ 185 (213)
T TIGR03840 109 A--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELL 185 (213)
T ss_pred c--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEE
Confidence 2 1246787774322 344444344499999999998777653211 1111233334455555554444555443
No 100
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=1.6e-11 Score=111.60 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCC--cEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~--~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||+|||+|.++..+++.+... ..|+++|+|+ .+++.++++ +++.+++.|+.+.+. ..++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~----~~l~~A~~~~~~~~~~~~d~~~lp~---~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK----VAIKYAAKRYPQVTFCVASSHRLPF---ADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH----HHHHHHHHhCCCCeEEEeecccCCC---cCCceeEEE
Confidence 456789999999999999999876422 3799999999 666666655 789999999877542 357999999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+..... .+. ++.++|||||+|+++++
T Consensus 157 ~~~~~~----~~~-e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 157 RIYAPC----KAE-ELARVVKPGGIVITVTP 182 (272)
T ss_pred EecCCC----CHH-HHHhhccCCCEEEEEeC
Confidence 865422 233 77899999999999874
No 101
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.30 E-value=1.1e-11 Score=108.43 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCCcEeE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
-++.+|||+|||-|.++..+|+. + .+|+++|+|+ ++++.|+.. -+|.+.+..+.+.... .++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G--a~VtgiD~se----~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~---~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G--ASVTGIDASE----KPIEVAKLHALESGVNIDYRQATVEDLASA---GGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C--CeeEEecCCh----HHHHHHHHhhhhccccccchhhhHHHHHhc---CCCccE
Confidence 47899999999999999999987 2 6999999999 555555533 2344555555444321 269999
Q ss_pred EEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 217 IFSDVA---QPDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 217 V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
|+|.-. .|+...++. ++.+++||+|.+++||..
T Consensus 128 V~cmEVlEHv~dp~~~~~-~c~~lvkP~G~lf~STin 163 (243)
T COG2227 128 VTCMEVLEHVPDPESFLR-ACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EEEhhHHHccCCHHHHHH-HHHHHcCCCcEEEEeccc
Confidence 998443 455556666 999999999999999843
No 102
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.30 E-value=5.2e-11 Score=113.16 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=76.8
Q ss_pred cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeE
Q 021911 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
+.+.++++.+|||+|||+|.++.++++.. ..+|+++|+|+..++.+.+.++ ..++++...|+... .++||+
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l------~~~fD~ 231 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDL------NGQFDR 231 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhc------CCCCCE
Confidence 34467899999999999999999999875 3689999999955444443332 13577888887543 368999
Q ss_pred EEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++... ..+....+. ++.++|||||++++.+
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~-~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFE-VVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEeCchhhCChHHHHHHHH-HHHHHcCCCcEEEEEE
Confidence 998544 233455666 9999999999999976
No 103
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.29 E-value=4e-11 Score=109.80 Aligned_cols=97 Identities=23% Similarity=0.251 Sum_probs=75.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..+|||+|||+|..+..+++. ..+|+++|+|+.+++.+.+.++.. .++.+.+.|+.... +.++||+|++...
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~----~~~~fD~I~~~~v 193 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS----IQEEYDFILSTVV 193 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc----ccCCccEEEEcch
Confidence 459999999999999999986 258999999997777766666543 47888888886643 2478999998765
Q ss_pred ----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 ----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. .+...++. ++.++|+|||++++..
T Consensus 194 l~~l~~~~~~~~l~-~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 194 LMFLNRERIPAIIK-NMQEHTNPGGYNLIVC 223 (287)
T ss_pred hhhCCHHHHHHHHH-HHHHhcCCCcEEEEEE
Confidence 2 24455665 9999999999977654
No 104
>PRK04457 spermidine synthase; Provisional
Probab=99.29 E-value=8.2e-11 Score=106.34 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=94.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+|||||||+|.++..++... +..+|++||+++..++.+.+.... .+++++++.|+.+.... ...+||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~--~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV--HRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh--CCCCCCEEE
Confidence 445799999999999999999886 678999999999444433333221 15799999998765332 246899999
Q ss_pred EeCCCh-------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 219 SDVAQP-------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 219 ~d~~~~-------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
+|.... ...+++. ++.+.|+|+|.|++... ... ..+...++.|++. |... .+.+......+.
T Consensus 142 ~D~~~~~~~~~~l~t~efl~-~~~~~L~pgGvlvin~~----~~~----~~~~~~l~~l~~~-F~~~-~~~~~~~~~~N~ 210 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFD-DCRNALSSDGIFVVNLW----SRD----KRYDRYLERLESS-FEGR-VLELPAESHGNV 210 (262)
T ss_pred EeCCCCCCCccccCcHHHHH-HHHHhcCCCcEEEEEcC----CCc----hhHHHHHHHHHHh-cCCc-EEEEecCCCccE
Confidence 986421 1256666 89999999999999641 111 1123345556544 6421 122223344567
Q ss_pred EEEEEEcCC
Q 021911 292 CVVGGYRMP 300 (305)
Q Consensus 292 ~vv~~~~~~ 300 (305)
++++.+..+
T Consensus 211 v~~a~~~~~ 219 (262)
T PRK04457 211 AVFAFKSAP 219 (262)
T ss_pred EEEEECCCC
Confidence 777766433
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.29 E-value=1.2e-10 Score=114.35 Aligned_cols=122 Identities=21% Similarity=0.159 Sum_probs=86.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+..+|||+|||+|..+..++..+ +..+|+++|+|+.++..+.++++.. .+|.+++.|+.... ...+||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----~~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----EKQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----cCCCccEEEE
Confidence 34689999999999999999875 5679999999997766666665543 36889999975432 1358999999
Q ss_pred eCCC-----------------h-----------h-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHH
Q 021911 220 DVAQ-----------------P-----------D-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL 270 (305)
Q Consensus 220 d~~~-----------------~-----------~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l 270 (305)
|+|. | + ...++. ++.++|+|+|.|++.+-. .... ...+.+
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~-~a~~~L~~gG~l~lEig~------~q~~----~v~~~~ 281 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAE-NAKQFLKPNGKIILEIGF------KQEE----AVTQIF 281 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHH-HHHHhccCCCEEEEEECC------chHH----HHHHHH
Confidence 9981 0 1 122344 788999999999987611 1111 123445
Q ss_pred HHCCCcEeEE
Q 021911 271 QQDQFKPFEQ 280 (305)
Q Consensus 271 ~~~Gf~~~e~ 280 (305)
.+.+|..+++
T Consensus 282 ~~~g~~~~~~ 291 (506)
T PRK01544 282 LDHGYNIESV 291 (506)
T ss_pred HhcCCCceEE
Confidence 6778886654
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=7.9e-11 Score=108.78 Aligned_cols=98 Identities=24% Similarity=0.214 Sum_probs=77.2
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+|||+|||+|.++..++... +..+|+++|+|+.+++.+.++++.. .+|.+++.|+.+..+ ..+||+|++|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEECC
Confidence 689999999999999999875 5679999999997777666666544 359999999865321 35799999998
Q ss_pred CCh----------------------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQP----------------------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~----------------------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|.. ....++. ++.++|+|||+|++.+
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~-~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILA-EAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 721 0134455 8999999999999987
No 107
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.26 E-value=6.2e-11 Score=112.45 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=96.7
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++.+|||++||+|.+++.+|.. ...|++||+++.+++.+.++++.. +|+.+++.|+.+.... ....||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEEE
Confidence 35689999999999999999965 248999999998888777777655 5899999999664321 1246999999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
|+|.......+. .+...++|++.+++|. ....++..+..| .||++.+...++.|...+.
T Consensus 307 DPPr~G~~~~~l-~~l~~~~p~~ivyvsc----------~p~TlaRDl~~L--~gy~l~~~~~~DmFPqT~H 365 (374)
T TIGR02085 307 NPPRRGIGKELC-DYLSQMAPKFILYSSC----------NAQTMAKDIAEL--SGYQIERVQLFDMFPHTSH 365 (374)
T ss_pred CCCCCCCcHHHH-HHHHhcCCCeEEEEEe----------CHHHHHHHHHHh--cCceEEEEEEeccCCCCCc
Confidence 999543333332 2223578987777774 233467777777 6899999888887776443
No 108
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=2e-11 Score=112.44 Aligned_cols=147 Identities=25% Similarity=0.295 Sum_probs=118.1
Q ss_pred ccccCCccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEE
Q 021911 92 KNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVV 171 (305)
Q Consensus 92 ~~~~~~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V 171 (305)
.|.+.....|..+.+++||. .|++.+.+| ++.++.+|+|.||++|.+|+|+|.++.+.+++
T Consensus 181 ~n~i~~~~ly~~g~~ilqd~-------------asclpA~ll------~p~~g~~v~d~caapg~KTsH~a~i~~n~gki 241 (413)
T KOG2360|consen 181 SNFIVEHELYKNGKFILQDK-------------ASCLPAHLL------DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKI 241 (413)
T ss_pred CcceeeccccccCceEEech-------------hhcchhhhc------CCCCCCceeeeccccccchhhHHHHhhccCCc
Confidence 45566678999999999998 899999998 68889999999999999999999999889999
Q ss_pred EEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC--------------------------
Q 021911 172 YAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------------------------- 223 (305)
Q Consensus 172 ~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------------------------- 223 (305)
+|+|.++.+++.+.++.+.. .+++.+.+|+... .+......+..|++|++|
T Consensus 242 ~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L 320 (413)
T KOG2360|consen 242 YAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENL 320 (413)
T ss_pred chhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHH
Confidence 99999999988888877654 6778889999775 332334678899999983
Q ss_pred -hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhh
Q 021911 224 -PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAV 262 (305)
Q Consensus 224 -~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v 262 (305)
..|..++. ++..+-+.. .++++| |++...+++.++
T Consensus 321 ~~fq~~~~~-hal~fp~~k-~vvyst--cs~~reene~vv 356 (413)
T KOG2360|consen 321 QSFQIRILK-HALTFPNLK-RLVYST--CSLHREENEQVV 356 (413)
T ss_pred HHHHHHHHH-HHhcCCchh-heeeec--chhhhhhhhHHH
Confidence 14566665 555554444 789998 777777777665
No 109
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=1.5e-10 Score=101.85 Aligned_cols=138 Identities=15% Similarity=0.071 Sum_probs=88.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------------CCCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------------~~nI~~~~~D~~~~~ 205 (305)
.+.++.+|||+|||.|..+.+||+. ...|+|||+|+.+++.+.+.... ..+|.+.++|+.++.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 3456789999999999999999986 35899999999777765332110 146888999998875
Q ss_pred ccccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccc-cCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 206 KYRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANC-IDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
.. ....||+|+-... .+.....+...+.++|||||++++.+.... .....++..+-.+++..+-...|+++..
T Consensus 111 ~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~ 188 (218)
T PRK13255 111 AA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELL 188 (218)
T ss_pred cc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEe
Confidence 33 2358899984222 344434444499999999997665442111 1111223334455555554444666654
Q ss_pred ee
Q 021911 281 VT 282 (305)
Q Consensus 281 ~~ 282 (305)
..
T Consensus 189 ~~ 190 (218)
T PRK13255 189 ER 190 (218)
T ss_pred ee
Confidence 43
No 110
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.9e-11 Score=113.89 Aligned_cols=148 Identities=22% Similarity=0.153 Sum_probs=108.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
+|...+++.+ ...++++|||+-||.|++++++|..+ .+|++||+++.+++.+.++|+.+ .|++++..|+.+.
T Consensus 280 kl~~~a~~~~---~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 280 KLYETALEWL---ELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHH---hhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 4444444333 46678999999999999999999775 48999999999999998888887 7899999999777
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
.........+|+||+|+|-.-..+.+. +....++|-..+++| | |+ ..++..+..|.+.||++.++..++
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~~~~~l-k~l~~~~p~~IvYVS----C-----NP-~TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGADREVL-KQLAKLKPKRIVYVS----C-----NP-ATLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred hhhccccCCCCEEEECCCCCCCCHHHH-HHHHhcCCCcEEEEe----C-----CH-HHHHHHHHHHHhCCeEEEEEEEec
Confidence 544222358899999999433222222 333467777677776 3 23 345778888999999988887777
Q ss_pred CCCCceE
Q 021911 285 PFERDHA 291 (305)
Q Consensus 285 p~~~~~~ 291 (305)
.|...|.
T Consensus 423 mFP~T~H 429 (432)
T COG2265 423 MFPHTHH 429 (432)
T ss_pred cCCCccc
Confidence 6665543
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=5.9e-11 Score=116.02 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=77.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
...++.+|||+|||+|.++..+++.. .+|+++|+|+.++....+.....+++.+++.|+..... .....+||+|++
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~ 109 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL-NISDGSVDLIFS 109 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc-CCCCCCEEEEeh
Confidence 34567899999999999999999874 38999999996655433322223689999999964321 123468999999
Q ss_pred eCCC---h--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ---P--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~---~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+. + +..+++. ++.++|||+|+|++..
T Consensus 110 ~~~l~~l~~~~~~~~l~-~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 110 NWLLMYLSDKEVENLAE-RMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhhHHhCCHHHHHHHHH-HHHHhcCCCeEEEEEe
Confidence 7762 2 2356666 9999999999999976
No 112
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.25 E-value=1.2e-10 Score=101.91 Aligned_cols=99 Identities=26% Similarity=0.280 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.++++.+|||+|||+|.++..++... .+|+++|+++..+..+.+.+++. .++.+++.|+..... ...+||+|
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I 148 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP---AYAPFDRI 148 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC---cCCCcCEE
Confidence 57788999999999999999888874 38999999996655555554433 579999999865422 13689999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++.+.+... . .+.+.|+|||.|++.+
T Consensus 149 ~~~~~~~~~~---~-~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAPEIP---R-ALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCchhhh---H-HHHHhcCCCcEEEEEE
Confidence 9988755433 2 5568999999999987
No 113
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=1e-10 Score=108.39 Aligned_cols=112 Identities=28% Similarity=0.356 Sum_probs=82.8
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
.+.+.++..+ .++++.+|||+|||+|.++..+++.++..+.|+++|+++..++.+.+.+++. +++++++.|+...
T Consensus 67 ~l~a~ll~~L---~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 67 SLMALFMEWV---GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHhc---CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc
Confidence 3444554333 5778899999999999999999998765568999999996655544444433 5799999998655
Q ss_pred cccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
... ..+||+|+++...+.... .+.+.|+|+|.+++..
T Consensus 144 ~~~---~~~fD~Ii~~~g~~~ip~----~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPE---FAPYDVIFVTVGVDEVPE----TWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccc---cCCccEEEECCchHHhHH----HHHHhcCCCCEEEEEe
Confidence 322 257999999877555443 3457899999998865
No 114
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.6e-10 Score=100.82 Aligned_cols=135 Identities=25% Similarity=0.360 Sum_probs=104.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.|+.+|||.|+|+|.++..+|..++|.+.++.+|+.+.+....++..++. +|+.+++.|+...-.. .....+|.
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~-~ks~~aDa 180 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL-IKSLKADA 180 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc-ccccccce
Confidence 6999999999999999999999999999999999999987777777776665 7999999999765422 12468999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCC
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPF 286 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~ 286 (305)
|++|+|.|+.+ + ..++..||.+|.-+++. ..||.. .....+.|.+.||.-++++.+.+-
T Consensus 181 VFLDlPaPw~A--i-Pha~~~lk~~g~r~csF-SPCIEQ-------vqrtce~l~~~gf~~i~~vEv~~~ 239 (314)
T KOG2915|consen 181 VFLDLPAPWEA--I-PHAAKILKDEGGRLCSF-SPCIEQ-------VQRTCEALRSLGFIEIETVEVLLV 239 (314)
T ss_pred EEEcCCChhhh--h-hhhHHHhhhcCceEEec-cHHHHH-------HHHHHHHHHhCCCceEEEEEeehh
Confidence 99999999866 2 36667999887544433 134322 234567778889998888877663
No 115
>PLN03075 nicotianamine synthase; Provisional
Probab=99.24 E-value=1.9e-10 Score=104.78 Aligned_cols=148 Identities=9% Similarity=0.084 Sum_probs=98.4
Q ss_pred CCCCCEEEEEecCCCccHHH-HHhhhCCCcEEEEEeCChHHHHHHHHHHHc-C---CCeEEEEccCCCCcccccCCCcEe
Q 021911 141 IKPGARVLYLGAASGTTVSH-VSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-R---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~-la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
..+.++|||||||+|.++.. ++....+.++++++|+++.++....+.++. . ++|.|++.|+.+.... ...||
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FD 197 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYD 197 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcC
Confidence 34679999999998865444 343445788999999999777666666643 1 5799999999875321 36899
Q ss_pred EEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceE
Q 021911 216 VIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 216 ~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~ 291 (305)
+|++++. .+++.+++. ++++.|+|||.|++-+.. - ....+-..++.-.-.||++...++-.+- --+-
T Consensus 198 lVF~~ALi~~dk~~k~~vL~-~l~~~LkPGG~Lvlr~~~-G------~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Ns 268 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIE-HLGKHMAPGALLMLRSAH-G------ARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINS 268 (296)
T ss_pred EEEEecccccccccHHHHHH-HHHHhcCCCcEEEEeccc-c------hHhhcCCCCChhhCCCeEEEEEECCCCC-ceee
Confidence 9999953 367888887 999999999999997610 0 1111111111111238887765543332 3566
Q ss_pred EEEEEEcCC
Q 021911 292 CVVGGYRMP 300 (305)
Q Consensus 292 ~vv~~~~~~ 300 (305)
+|+++++.-
T Consensus 269 vi~~r~~~~ 277 (296)
T PLN03075 269 VIIARKPGG 277 (296)
T ss_pred EEEEEeecC
Confidence 677777643
No 116
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=109.43 Aligned_cols=139 Identities=22% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccccc-CCCcEeEEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM-LVGMVDVIF 218 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~-~~~~fD~V~ 218 (305)
+.+|||++|=||.++.|+|.. ...+|++||+|.+++.-+.++++.+ ..+.+++.|+.+...... ...+||+||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 899999999999999999975 5569999999997777666666655 457899999987754321 224999999
Q ss_pred EeCC------------ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHH-HHHHHCCCcEeEEeecCC
Q 021911 219 SDVA------------QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEV-KKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 219 ~d~~------------~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~-~~l~~~Gf~~~e~~~l~p 285 (305)
+||| +.+...++. .+.++|+|||.+++++ |+-... ...|.+.+ ..+...+.....+ ....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~-~~~~iL~pgG~l~~~s--~~~~~~---~~~f~~~i~~a~~~~~~~~~~~-~~~~ 368 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLND-LALRLLAPGGTLVTSS--CSRHFS---SDLFLEIIARAAAAAGRRAQEI-EGEG 368 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHH-HHHHHcCCCCEEEEEe--cCCccC---HHHHHHHHHHHHHhcCCcEEEe-eccC
Confidence 9999 234556666 8999999999999998 442222 22333333 3334454444333 2344
Q ss_pred CCCceE
Q 021911 286 FERDHA 291 (305)
Q Consensus 286 ~~~~~~ 291 (305)
...||.
T Consensus 369 ~~~D~p 374 (393)
T COG1092 369 QPPDHP 374 (393)
T ss_pred CCCCcc
Confidence 445554
No 117
>PRK01581 speE spermidine synthase; Validated
Probab=99.23 E-value=3.2e-10 Score=105.62 Aligned_cols=143 Identities=24% Similarity=0.297 Sum_probs=102.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------------CCCeEEEEccCCCCcccccC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------RTNVIPIIEDARHPAKYRML 210 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------------~~nI~~~~~D~~~~~~~~~~ 210 (305)
..+||++|||.|..+..+++. .+..+|++||+++ ++++.|++ .+++++++.|+...... .
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDp----eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~ 223 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDG----SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--P 223 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCH----HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--c
Confidence 369999999999988888875 2346899999999 55555553 26899999999875432 2
Q ss_pred CCcEeEEEEeCCChh--------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 211 VGMVDVIFSDVAQPD--------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~--------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
...||+|++|.+.|. ..+.+. .+.+.|+|+|.|++.. .+. .....++......|++.++.......
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~-~~~~~LkPgGV~V~Qs--~sp---~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFA-RIATFLTEDGAFVCQS--NSP---ADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHH-HHHHhcCCCcEEEEec--CCh---hhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 468999999987542 134555 8999999999998874 221 11233445566788888888887666
Q ss_pred cCC-CCCceEEEEEEEcC
Q 021911 283 LEP-FERDHACVVGGYRM 299 (305)
Q Consensus 283 l~p-~~~~~~~vv~~~~~ 299 (305)
.-| |...+.+++|.+..
T Consensus 298 ~vPsyg~~WgF~~as~~~ 315 (374)
T PRK01581 298 IVPSFGTDWGFHIAANSA 315 (374)
T ss_pred ecCCCCCceEEEEEeCCc
Confidence 544 54448888887643
No 118
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.22 E-value=7e-11 Score=102.15 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=93.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+...+||||||.|.++.++|... |+..+++||++...+..+.+.+.+. +|+.+++.|+.........++++|.|+++
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 33499999999999999999985 7889999999998887777776654 89999999998855443445899999999
Q ss_pred CCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHH--CCCcEeE
Q 021911 221 VAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQ--DQFKPFE 279 (305)
Q Consensus 221 ~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~--~Gf~~~e 279 (305)
.|.|+ +...+. .+++.|+|||.|.+.| +...++...++.+.+ ..|+...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~-~~~~~L~~gG~l~~~T---------D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLE-LLARVLKPGGELYFAT---------DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHH-HHHHHEEEEEEEEEEE---------S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCCCCcccchhhhhcCCchHHH-HHHHHcCCCCEEEEEe---------CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 99653 555665 7889999999999998 344455555666655 4777663
No 119
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=3.8e-10 Score=104.24 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
..++..+|||+|||+|.++..+++.+ |..+++++|+ +..++...+.+.+. ++|+++..|+.+.+ .+.+|+
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-----~~~~D~ 218 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-----YPEADA 218 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-----CCCCCE
Confidence 56778899999999999999999986 6789999997 54444444444332 57999999987542 124698
Q ss_pred EEEeCC----Chh-HHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVA----QPD-QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~----~~~-~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|++... .++ ..+++. ++++.|||||+|++..
T Consensus 219 v~~~~~lh~~~~~~~~~il~-~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCK-KAFDAMRSGGRLLILD 254 (306)
T ss_pred EEeEhhhhcCChHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 875432 122 345666 9999999999999986
No 120
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.20 E-value=1.6e-10 Score=96.63 Aligned_cols=127 Identities=24% Similarity=0.363 Sum_probs=87.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC-eEEEEccCCCCcccccCCCcEeEEEE--
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN-VIPIIEDARHPAKYRMLVGMVDVIFS-- 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n-I~~~~~D~~~~~~~~~~~~~fD~V~~-- 219 (305)
.+|||||||+|.+...|++. +-.+.+++||+|+.++.-+.+.|+.+ +| |.|.+.|++.+.. ...+||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~---~~~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF---LSGQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc---cccceeEEeecC
Confidence 49999999999999999987 34456999999997766655555554 45 9999999998743 3578888773
Q ss_pred --eCC--Chh----HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCC
Q 021911 220 --DVA--QPD----QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 220 --d~~--~~~----~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p 285 (305)
|+. +|+ ...+..-.+.++|+|+|.|+|.. |-+.. .+.++.+...+|+....+....
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS---CN~T~-------dELv~~f~~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS---CNFTK-------DELVEEFENFNFEYLSTVPTPT 208 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe---cCccH-------HHHHHHHhcCCeEEEEeeccce
Confidence 222 221 11222335678999999999986 42211 1224666777788777665443
No 121
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.20 E-value=9.8e-11 Score=104.12 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc-c--cCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY-R--MLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~-~--~~~~~ 213 (305)
...+..+|||+||++|..++.++..+.+.++|+++|+++.+++.+.++.++. .+|++++.|+.+..+. . ....+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 3456789999999999999999998877889999999997766666655544 5799999999765321 0 01358
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||+||+|...+.....+. .+.++|+|||.+++.
T Consensus 145 fD~VfiDa~k~~y~~~~~-~~~~ll~~GG~ii~d 177 (234)
T PLN02781 145 FDFAFVDADKPNYVHFHE-QLLKLVKVGGIIAFD 177 (234)
T ss_pred CCEEEECCCHHHHHHHHH-HHHHhcCCCeEEEEE
Confidence 999999998776667776 889999999998875
No 122
>PRK03612 spermidine synthase; Provisional
Probab=99.20 E-value=2.4e-10 Score=112.86 Aligned_cols=144 Identities=20% Similarity=0.195 Sum_probs=100.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-------------CCCeEEEEccCCCCcccc
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------RTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-------------~~nI~~~~~D~~~~~~~~ 208 (305)
++..+|||+|||+|..+..+++. .+..+|++||+++ ++++.+++ .+++++++.|+.+....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~----~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDP----AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCH----HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-
Confidence 34579999999999999999875 2226999999999 45555444 15799999999765332
Q ss_pred cCCCcEeEEEEeCCChh--------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 209 MLVGMVDVIFSDVAQPD--------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~~~--------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
..++||+|++|.+.+. ..+.+. ++.+.|||+|.+++.. .+. ......+.+..+.+++.||.+...
T Consensus 370 -~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~-~~~~~L~pgG~lv~~~--~~~---~~~~~~~~~i~~~l~~~gf~v~~~ 442 (521)
T PRK03612 370 -LAEKFDVIIVDLPDPSNPALGKLYSVEFYR-LLKRRLAPDGLLVVQS--TSP---YFAPKAFWSIEATLEAAGLATTPY 442 (521)
T ss_pred -CCCCCCEEEEeCCCCCCcchhccchHHHHH-HHHHhcCCCeEEEEec--CCc---ccchHHHHHHHHHHHHcCCEEEEE
Confidence 2468999999988543 123455 8899999999999875 221 112334566678888899955444
Q ss_pred eecCCCCCceEEEEEEEc
Q 021911 281 VTLEPFERDHACVVGGYR 298 (305)
Q Consensus 281 ~~l~p~~~~~~~vv~~~~ 298 (305)
....|.-..+.++++.+.
T Consensus 443 ~~~vps~g~w~f~~as~~ 460 (521)
T PRK03612 443 HVNVPSFGEWGFVLAGAG 460 (521)
T ss_pred EeCCCCcchhHHHeeeCC
Confidence 433343356667777554
No 123
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=2e-10 Score=117.15 Aligned_cols=124 Identities=20% Similarity=0.104 Sum_probs=90.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
++.+|||+|||+|.++++++.. ...+|++||+|+.++..+.++++.+ .++++++.|+.++... ...+||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCEEE
Confidence 5789999999999999999986 3457999999997777776666654 3689999998765321 246899999
Q ss_pred EeCCCh--------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 219 SDVAQP--------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 219 ~d~~~~--------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+|+|.- +...++. .+.++|+|||.|++++ |...- ....+.+.+.|+++..+.
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~-~a~~lL~~gG~l~~~~---~~~~~-------~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIK-DAKRLLRPGGTLYFSN---NKRGF-------KMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHH-HHHHHcCCCCEEEEEe---CCccC-------ChhHHHHHhCCCeEEEEe
Confidence 999931 2344555 7889999999999886 32111 112455667788776543
No 124
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=5.3e-10 Score=93.77 Aligned_cols=159 Identities=28% Similarity=0.358 Sum_probs=103.1
Q ss_pred hhhHHHHHHHcccccc-CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEc-cC
Q 021911 124 FRSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DA 201 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~-~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~-D~ 201 (305)
|++..+-.+++.=++. .++|+++|||+||+||.++..+-+.++|.+.|.+||+-+ ..--+.+.+++. |+
T Consensus 49 yR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dv 119 (232)
T KOG4589|consen 49 YRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDV 119 (232)
T ss_pred hhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCccccccccc
Confidence 4666666666533322 568899999999999999999999999999999999976 111245666666 88
Q ss_pred CCCcccc-----cCCCcEeEEEEeCCC-------hhHHHHHHHH------HhccCCCCcEEEEEEcccccCCCCchhhhH
Q 021911 202 RHPAKYR-----MLVGMVDVIFSDVAQ-------PDQARILALN------ASYFLKAGGHFVISIKANCIDSTVPAEAVF 263 (305)
Q Consensus 202 ~~~~~~~-----~~~~~fD~V~~d~~~-------~~~~~~l~~~------a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~ 263 (305)
+++..+. .+...+|+|++||+. .|+.+++.++ +..+|+|+|.|++-++... +...|
T Consensus 120 tdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~------e~~~l 193 (232)
T KOG4589|consen 120 TDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS------EEALL 193 (232)
T ss_pred CCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC------chHHH
Confidence 8875432 234589999999982 3555544433 6678999999999874322 33344
Q ss_pred HHHHHHHHHCCCcEeEEeec--CCCCCceEEEEEEEcCCC
Q 021911 264 QSEVKKLQQDQFKPFEQVTL--EPFERDHACVVGGYRMPK 301 (305)
Q Consensus 264 ~~~~~~l~~~Gf~~~e~~~l--~p~~~~~~~vv~~~~~~~ 301 (305)
..++.. . |+.+..+.- .--|.....+++...+..
T Consensus 194 ~r~l~~---~-f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 194 QRRLQA---V-FTNVKKVKPDASRDESAETYLVCLNFKGN 229 (232)
T ss_pred HHHHHH---H-hhhcEeeCCccccccccceeeeeeeccCc
Confidence 444332 2 444443321 123344455666655543
No 125
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=100.84 Aligned_cols=133 Identities=20% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------CCeEEEEccCCCCcccccCC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------TNVIPIIEDARHPAKYRMLV 211 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------~nI~~~~~D~~~~~~~~~~~ 211 (305)
.++.+.+|||.|.|-|++++..++. ....|+.||.++ +.++.|+.+ .+|+++..|+.+..+. +.+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp----~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~~D 203 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDP----NVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-FDD 203 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCC----CeEEeeccCCCCccccccccEEecccHHHHHhc-CCc
Confidence 4667999999999999999998887 455899999999 677777655 3688999998665432 346
Q ss_pred CcEeEEEEeCCC-----hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 212 GMVDVIFSDVAQ-----PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 212 ~~fD~V~~d~~~-----~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
.+||+|+.|+|- ....+-|..+.+++|||||.|+-.+-+.- ...--..+.....+.|++.||+.++.+
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg--~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG--KRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC--cccccCChhHHHHHHHHhcCceeeeee
Confidence 789999999992 23444444589999999999988762111 000111233344678899999977654
No 126
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.19 E-value=2e-10 Score=104.39 Aligned_cols=134 Identities=21% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.+|||++|=+|.++.+++.. ...+|+.||.|..++....++++.+ .++++++.|+.+.........+||+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 4789999999999999998754 4558999999998877777777655 478999999876433211236999999
Q ss_pred EeCCC---------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCC
Q 021911 219 SDVAQ---------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEP 285 (305)
Q Consensus 219 ~d~~~---------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p 285 (305)
+|||. .+..+++. .+.++|+|||.|+.++ |+...+ ...|.+.+.... ..+++++.+...|
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~-~a~~ll~~gG~l~~~s--cs~~i~---~~~l~~~~~~~a-~~~~~~~~~~~p~ 269 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLR-RAMKLLKPGGLLLTCS--CSHHIS---PDFLLEAVAEAA-REVEFIERLGQPP 269 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHH-HHHHTEEEEEEEEEEE----TTS----HHHHHHHHHHHH-HHCEEEEEEE---
T ss_pred ECCCCCCCCHHHHHHHHHHHHH-HHHHhcCCCCEEEEEc--CCcccC---HHHHHHHHHHhC-ccceEeeeecccc
Confidence 99992 34555665 8999999999999887 432221 223333333332 3477777776544
No 127
>PRK06922 hypothetical protein; Provisional
Probab=99.18 E-value=1.8e-10 Score=114.07 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..++.+|||+|||+|..+..++..+ +..+|+++|+|+.+++.+.+.+... .++.+++.|+.+.+.. +.+++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~-fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS-FEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc-cCCCCEEEEEE
Confidence 4467899999999999999999875 6789999999995555544433222 4678888998765421 23578999998
Q ss_pred eCCC----------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQ----------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~----------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+. .+..+++. ++.++|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLr-eI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQ-SAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHH-HHHHHcCCCcEEEEEe
Confidence 6531 23456666 9999999999999986
No 128
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.18 E-value=2e-11 Score=93.58 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=54.2
Q ss_pred EEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
||+|||+|.++..+++.+ +..+++++|+|+ .+++.++++ .++..+..+..+..... ...+||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~----~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISP----SMLERARERLAELGNDNFERLRFDVLDLFDYD-PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSS----STTSTTCCCHHHCT---EEEEE--SSS---CC-C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCH----HHHHHHHHHhhhcCCcceeEEEeecCChhhcc-cccccceehhhh
Confidence 799999999999999987 678999999999 555444444 23444444443332221 125999999865
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEE
Q 021911 222 A---QPDQARILALNASYFLKAGGHF 244 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~l 244 (305)
. .++....+. ++.++|||||+|
T Consensus 75 vl~~l~~~~~~l~-~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLR-NIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHH-HHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHH-HHHHHcCCCCCC
Confidence 5 346667776 999999999986
No 129
>PRK00811 spermidine synthase; Provisional
Probab=99.17 E-value=2.9e-09 Score=97.37 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=97.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH-------cCCCeEEEEccCCCCcccccCCCcEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------KRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~-------~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
...+||+||||.|.++..+++.. +..+|++||+++..++.+.+... ..+++++++.|+...... ...+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCccc
Confidence 35799999999999999998763 34589999999966555444332 136799999998765432 246899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~ 286 (305)
+|++|.+.|. ..+.+. .+.+.|+|+|.|++... +... . ...+....+.|++. |...... .+..|
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~-~~~~~L~~gGvlv~~~~--~~~~--~-~~~~~~i~~tl~~~-F~~v~~~~~~vp~~ 225 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYE-NCKRALKEDGIFVAQSG--SPFY--Q-ADEIKDMHRKLKEV-FPIVRPYQAAIPTY 225 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHH-HHHHhcCCCcEEEEeCC--Cccc--C-HHHHHHHHHHHHHH-CCCEEEEEeECCcc
Confidence 9999876331 244455 88999999999988642 2111 1 23455566777666 6554433 33445
Q ss_pred C-CceEEEEEEE
Q 021911 287 E-RDHACVVGGY 297 (305)
Q Consensus 287 ~-~~~~~vv~~~ 297 (305)
. ..+.+++|.+
T Consensus 226 ~~~~w~f~~as~ 237 (283)
T PRK00811 226 PSGLWSFTFASK 237 (283)
T ss_pred cCchheeEEeec
Confidence 2 3456677776
No 130
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=1.5e-10 Score=104.82 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=73.7
Q ss_pred CCCCEEEEEecCCCc----cHHHHHhhhCC----CcEEEEEeCChHHHHHHHHHHHcC----------------------
Q 021911 142 KPGARVLYLGAASGT----TVSHVSDIVGP----NGVVYAVEFSHRSGRDLVNMAKKR---------------------- 191 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~----~t~~la~~~~~----~~~V~avD~s~~~~~~l~~~a~~~---------------------- 191 (305)
.+..+|||+|||+|. ++..+++.... ..+|+|+|+|+. +++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~----~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK----ALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH----HHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 345799999999996 45555555432 468999999994 44444431
Q ss_pred -----------CCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 -----------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 -----------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|.+.+.|+.+.+. ..++||+|+|... .+++.+++. ++++.|||||+|++..
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~~~~~~~~l~-~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFDEPTQRKLLN-RFAEALKPGGYLFLGH 242 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCCHHHHHHHHH-HHHHHhCCCeEEEEEC
Confidence 368899999987643 2478999999543 356667887 9999999999999975
No 131
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.15 E-value=6.6e-11 Score=104.31 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CC----eEEEEccCCCCcccccCCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TN----VIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~n----I~~~~~D~~~~~~~~~~~~~fD 215 (305)
+++|||+|||.|.++.+||+.- .+|+++|+++.+++.+.+.++.. .+ +++.+.|+... .+.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~------~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL------TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc------ccccc
Confidence 5889999999999999999982 59999999994443333332222 22 34444455443 35699
Q ss_pred EEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcc
Q 021911 216 VIFSDVA---QPDQARILALNASYFLKAGGHFVISIKA 250 (305)
Q Consensus 216 ~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~ 250 (305)
+|+|... ..+..+++. .+.++|||+|.|+++|-.
T Consensus 161 aVvcsevleHV~dp~~~l~-~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLN-CLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeeHHHHHHHhCHHHHHH-HHHHHhCCCCceEeeehh
Confidence 9999666 345666666 899999999999999843
No 132
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.15 E-value=4.5e-10 Score=106.14 Aligned_cols=129 Identities=18% Similarity=0.070 Sum_probs=90.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccccc-------------
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRM------------- 209 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~------------- 209 (305)
.+|||++||+|+++..+++.. ..|++||+|+.+++.+.++++.+ .|+.++..|+.+......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 579999999999999999874 38999999998887777776655 589999999866432100
Q ss_pred CCCcEeEEEEeCCChhH-HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCC
Q 021911 210 LVGMVDVIFSDVAQPDQ-ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFER 288 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~~-~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~ 288 (305)
....||+||+|+|-... ..++. .+ ++|...+++|. ++ ..++..+..|.+ ||++.+...++.|..
T Consensus 285 ~~~~~D~v~lDPPR~G~~~~~l~-~l---~~~~~ivyvSC---------~p-~tlarDl~~L~~-gY~l~~v~~~DmFPq 349 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGLDDETLK-LV---QAYERILYISC---------NP-ETLCENLETLSQ-THKVERFALFDQFPY 349 (362)
T ss_pred cCCCCCEEEECCCCCCCcHHHHH-HH---HccCCEEEEEe---------CH-HHHHHHHHHHcC-CcEEEEEEEcccCCC
Confidence 01258999999995432 22222 22 23666666663 23 335666777764 899999888887776
Q ss_pred ceE
Q 021911 289 DHA 291 (305)
Q Consensus 289 ~~~ 291 (305)
.+.
T Consensus 350 T~H 352 (362)
T PRK05031 350 THH 352 (362)
T ss_pred CCc
Confidence 443
No 133
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.15 E-value=4.6e-10 Score=97.27 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=81.3
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.|....+...++..+. ...++.+|||+|||+|.++..++... ..+|++||+++.+++.+.++++.. .++.+++.
T Consensus 34 Rp~~d~v~e~l~~~l~--~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLA--PVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHh--hhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3445666555554443 22457899999999999998655442 358999999997777666665543 57999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCCC-hhHHHHHHHHH--hccCCCCcEEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQ-PDQARILALNA--SYFLKAGGHFVISI 248 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~-~~~~~~l~~~a--~~~LkpGG~lv~s~ 248 (305)
|+...... ...+||+|++|+|. ......+...+ ..+|+|++.+++++
T Consensus 110 D~~~~l~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 110 NALSFLAQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred hHHHHHhh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 98654321 23479999999992 22222221122 34589999888886
No 134
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.14 E-value=1.6e-09 Score=96.02 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...++.+|||+|||+|.++..+++. ..+|+++|+++..+..+.+..... .++.++..|+...... ...+||+|+
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~Ii 119 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE--HPGQFDVVT 119 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh--cCCCccEEE
Confidence 3557889999999999999988876 247999999995544444333322 3577777777655322 246899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+... .++...++. ++.++|+|+|.|++++.
T Consensus 120 ~~~~l~~~~~~~~~l~-~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 120 CMEMLEHVPDPASFVR-ACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EhhHhhccCCHHHHHH-HHHHHcCCCcEEEEEec
Confidence 8544 345666776 99999999999998863
No 135
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.14 E-value=1.4e-09 Score=94.70 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+|||+|||+|..+..++..+ +..+|++||+|+ ++++.++++ +++.+++.|+.++ ....+||+|+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~----~~l~~A~~~~~~~~~~~~d~~~~----~~~~sfD~V~ 110 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINE----YAVEKAKAYLPNINIIQGSLFDP----FKDNFFDLVL 110 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCH----HHHHHHHhhCCCCcEEEeeccCC----CCCCCEEEEE
Confidence 34567899999999999999999875 457999999999 666666654 6788888898763 2357999999
Q ss_pred EeCC----Chh-HHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA----QPD-QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~----~~~-~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++.. .++ ..+.+. ++.+++ +++++++.
T Consensus 111 ~~~vL~hl~p~~~~~~l~-el~r~~--~~~v~i~e 142 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYR-ELYRCS--NRYILIAE 142 (204)
T ss_pred ECChhhhCCHHHHHHHHH-HHHhhc--CcEEEEEE
Confidence 8654 233 455555 888887 34677765
No 136
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.14 E-value=9.6e-11 Score=101.92 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=89.0
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCC
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDAR 202 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~ 202 (305)
+.....+|..|. ......+||||||++|..++++|+.+.+.++|+++|+++...+.+.++.++. .+|+++..|+.
T Consensus 30 ~~~~g~lL~~l~--~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 30 SPETGQLLQMLV--RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHH--HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred CHHHHHHHHHHH--HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 333444444333 2344579999999999999999999877899999999997766555555543 58999999987
Q ss_pred CCccc-c--cCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 203 HPAKY-R--MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 203 ~~~~~-~--~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+..+. . ...++||+||+|.........+. .+.++|+|||.+++-
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~-~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDADKRNYLEYFE-KALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEESTGGGHHHHHH-HHHHHEEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcccccchhhHHH-HHhhhccCCeEEEEc
Confidence 64321 1 11358999999999888888887 888999999999886
No 137
>PHA03411 putative methyltransferase; Provisional
Probab=99.14 E-value=7.1e-10 Score=99.74 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
..+..+|||+|||+|.++..++... +..+|++||+|+ .+++.++++ +++.+++.|+.+... ..+||+|++
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp----~al~~Ar~n~~~v~~v~~D~~e~~~----~~kFDlIIs 132 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNP----EFARIGKRLLPEAEWITSDVFEFES----NEKFDVVIS 132 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCH----HHHHHHHHhCcCCEEEECchhhhcc----cCCCcEEEE
Confidence 4456799999999999999988874 245899999999 566666554 679999999987642 358999999
Q ss_pred eCCC-----hhH------------------HHHHHHHHhccCCCCcEEEEEEcccc-cCCCCchhhhHHHHHHHHHHCCC
Q 021911 220 DVAQ-----PDQ------------------ARILALNASYFLKAGGHFVISIKANC-IDSTVPAEAVFQSEVKKLQQDQF 275 (305)
Q Consensus 220 d~~~-----~~~------------------~~~l~~~a~~~LkpGG~lv~s~~~~~-i~~~~~~~~v~~~~~~~l~~~Gf 275 (305)
|+|. .++ .+.+. .+..+|+|+|.+++..-... .+....+.+. .+.|++.||
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~-~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y----~~~l~~~g~ 207 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA-DVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY----LKWSKQTGL 207 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHh-hhHheecCCceEEEEEeccccccccCCHHHH----HHHHHhcCc
Confidence 9992 111 22333 56788999997766531111 1222222222 355577777
Q ss_pred cEe
Q 021911 276 KPF 278 (305)
Q Consensus 276 ~~~ 278 (305)
...
T Consensus 208 ~~~ 210 (279)
T PHA03411 208 VTY 210 (279)
T ss_pred Eec
Confidence 643
No 138
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.13 E-value=7.4e-10 Score=97.30 Aligned_cols=97 Identities=24% Similarity=0.237 Sum_probs=70.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||+|.++..++.. ...|+++|+|+.++..+.+.+... .++.+++.|+...+ .+||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence 456899999999999999999876 248999999996655554444332 37899999987653 689999
Q ss_pred EEeCC-----ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVA-----QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
++... .++...++. ++.++++++..+.++
T Consensus 124 i~~~~l~~~~~~~~~~~l~-~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALG-HLASLTKERVIFTFA 157 (219)
T ss_pred EEhhHHHhCCHHHHHHHHH-HHHHHhCCCEEEEEC
Confidence 87433 234455565 888888877655554
No 139
>PRK05785 hypothetical protein; Provisional
Probab=99.13 E-value=5.9e-10 Score=98.64 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.++.+|||+|||+|..+.++++.. ..+|+++|+|+ +|++.++++ ..+++.|+.+.+ +.+++||+|++..
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~----~Ml~~a~~~--~~~~~~d~~~lp---~~d~sfD~v~~~~ 118 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAE----NMLKMNLVA--DDKVVGSFEALP---FRDKSFDVVMSSF 118 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCH----HHHHHHHhc--cceEEechhhCC---CCCCCEEEEEecC
Confidence 347899999999999999999885 35899999999 777777654 345778887664 2367999999976
Q ss_pred C---ChhHHHHHHHHHhccCCCC
Q 021911 222 A---QPDQARILALNASYFLKAG 241 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpG 241 (305)
. .++..+.+. +++++|||.
T Consensus 119 ~l~~~~d~~~~l~-e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIA-EFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHH-HHHHHhcCc
Confidence 6 356677777 999999994
No 140
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=5.6e-09 Score=96.79 Aligned_cols=137 Identities=25% Similarity=0.311 Sum_probs=100.8
Q ss_pred ccccCcc-eeEeecCCCceeeee------ecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcE
Q 021911 98 EAVYNEK-RISVQNEDGTKVEYR------IWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGV 170 (305)
Q Consensus 98 ~~~y~e~-~~~~~d~~~~~~~~~------~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~ 170 (305)
+-+|++. ..++..++| +.|. .|+|..+.--..++. ...+|++|||+.||-|.+++.+|..- ..+
T Consensus 143 e~laGe~~teTihrE~G--~~f~vD~~Kv~Fsprl~~ER~Rva~-----~v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~ 213 (341)
T COG2520 143 EVLAGERRTETIHRENG--CRFKVDVAKVYFSPRLSTERARVAE-----LVKEGETVLDMFAGVGPFSIPIAKKG--RPK 213 (341)
T ss_pred EEeecCCCceEEEecCC--EEEEEchHHeEECCCchHHHHHHHh-----hhcCCCEEEEccCCcccchhhhhhcC--Cce
Confidence 4456665 555555544 2222 256655555555654 34569999999999999999999883 334
Q ss_pred EEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 171 VYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 171 V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|+|++|.+++.|.++++.+ ..|.++++|++..... ...+|.|+++.|.. ..+.+. .|...|+++|.+.+.
T Consensus 214 V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~---~~~aDrIim~~p~~-a~~fl~-~A~~~~k~~g~iHyy 288 (341)
T COG2520 214 VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE---LGVADRIIMGLPKS-AHEFLP-LALELLKDGGIIHYY 288 (341)
T ss_pred EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc---cccCCEEEeCCCCc-chhhHH-HHHHHhhcCcEEEEE
Confidence 999999999999999888877 3488999999887643 27899999877742 233344 777899999999987
Q ss_pred E
Q 021911 248 I 248 (305)
Q Consensus 248 ~ 248 (305)
+
T Consensus 289 ~ 289 (341)
T COG2520 289 E 289 (341)
T ss_pred e
Confidence 6
No 141
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.11 E-value=7.8e-10 Score=101.97 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-C--CeEEEEccCCCCcccccCC--CcEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-T--NVIPIIEDARHPAKYRMLV--GMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~--nI~~~~~D~~~~~~~~~~~--~~fD 215 (305)
+.++.+|||+|||+|.++..|++.+....+|++||+|+.++..+.+.+... + +|.++++|+.+........ ....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 456789999999999999999998643468999999996655555544332 3 4677899997643221001 1233
Q ss_pred EEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+++++.+ ..+..++|. ++++.|+|||.|++.+
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~-~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLR-RIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEecccccCCCHHHHHHHHH-HHHHhcCCCCEEEEec
Confidence 4444333 234555665 9999999999999976
No 142
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=95.56 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=79.4
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeE-EEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVI-PIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~-~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
..||++|||||..-...-.. |..+|+.+|.++.+-+-+.+.++++ .++. ++++|.++.+.. .+.++|+|++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--ADGSYDTVVCTL 153 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc--ccCCeeeEEEEE
Confidence 46899999999987776654 6789999999996655555555444 5777 889999887644 368999999865
Q ss_pred C---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 A---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. ..++.+.|. ++.++|+|||++++..
T Consensus 154 vLCSve~~~k~L~-e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 154 VLCSVEDPVKQLN-EVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEeccCCHHHHHH-HHHHhcCCCcEEEEEe
Confidence 4 678899998 9999999999999976
No 143
>PLN02476 O-methyltransferase
Probab=99.10 E-value=6.9e-10 Score=100.50 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccc---cCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYR---MLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~---~~~~~ 213 (305)
......+|||+|+++|..++++|..+.+.+.|+++|.++.+.+.+.++.++. ++|+++..|+.+..+.. ....+
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3455689999999999999999998877889999999997766655555544 58999999986643210 01358
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||+||.|.........+. .+.++|+|||.+++-
T Consensus 195 FD~VFIDa~K~~Y~~y~e-~~l~lL~~GGvIV~D 227 (278)
T PLN02476 195 YDFAFVDADKRMYQDYFE-LLLQLVRVGGVIVMD 227 (278)
T ss_pred CCEEEECCCHHHHHHHHH-HHHHhcCCCcEEEEe
Confidence 999999999877777777 888999999998875
No 144
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.09 E-value=9.6e-10 Score=96.63 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=94.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------------CCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------------TNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------------~nI~~~~~D~~~~~ 205 (305)
..+++.+||..|||.|.-...||+. ...|++||+|+.+++.+.+..... .+|++.++|+.++.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 5678889999999999999999987 258999999998777765443321 36889999998876
Q ss_pred ccccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEc-ccccCCCCchhhhHHHHHHHHHHCCCcEeEE
Q 021911 206 KYRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIK-ANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQ 280 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~-~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~ 280 (305)
.. ..++||+|+=... .|++......++.++|||+|.+++.+. .......-+|..+-.+++..+-..+|++...
T Consensus 111 ~~--~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l 188 (218)
T PF05724_consen 111 PE--DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEEL 188 (218)
T ss_dssp GS--CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEE
T ss_pred hh--hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEE
Confidence 43 2358999995332 566666666699999999999544432 1222233456667777888887788887765
Q ss_pred e
Q 021911 281 V 281 (305)
Q Consensus 281 ~ 281 (305)
.
T Consensus 189 ~ 189 (218)
T PF05724_consen 189 E 189 (218)
T ss_dssp E
T ss_pred e
Confidence 4
No 145
>PLN02366 spermidine synthase
Probab=99.09 E-value=6.8e-09 Score=95.76 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=96.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
....+||+||||.|.++..+++. .+-.+|+.||+++..++-+.+.... .+++++++.|+...... ...+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccCCCCC
Confidence 34589999999999999999987 2335899999999544443333221 25899999998665321 1135899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCC-cEeEE--eecCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQF-KPFEQ--VTLEP 285 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf-~~~e~--~~l~p 285 (305)
+|++|.+.|. ..+.+. .+++.|+|+|.|+... .+... ....+....+.|++. | ..+.. ..+..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~-~~~~~L~pgGvlv~q~--~s~~~---~~~~~~~i~~tl~~~-F~~~v~~~~~~vPs 240 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFE-SVARALRPGGVVCTQA--ESMWL---HMDLIEDLIAICRET-FKGSVNYAWTTVPT 240 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHH-HHHHhcCCCcEEEECc--CCccc---chHHHHHHHHHHHHH-CCCceeEEEecCCC
Confidence 9999887532 334555 8999999999997654 22111 123445556666666 5 34433 23444
Q ss_pred CC-CceEEEEEEEc
Q 021911 286 FE-RDHACVVGGYR 298 (305)
Q Consensus 286 ~~-~~~~~vv~~~~ 298 (305)
|. ..+.++++.+.
T Consensus 241 y~~g~w~f~~as~~ 254 (308)
T PLN02366 241 YPSGVIGFVLCSKE 254 (308)
T ss_pred cCCCceEEEEEECC
Confidence 64 35667777665
No 146
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.09 E-value=7.6e-10 Score=96.65 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=87.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE-ccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII-EDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~-~D~~~~~~~~~~~~~fD 215 (305)
......+|||+|++.|..++++|..+..+++++++|+++++.+.+.++.++. +.|+.+. .|+.+.... ...++||
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fD 134 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFD 134 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCcc
Confidence 3557799999999999999999999866889999999997766666665554 4588888 487655432 3468999
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||.|..-.+..+.+. .+.++|+|||.+++-
T Consensus 135 liFIDadK~~yp~~le-~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDADKADYPEYLE-RALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCChhhCHHHHH-HHHHHhCCCcEEEEe
Confidence 9999999888888887 888999999998885
No 147
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.09 E-value=3.2e-09 Score=93.51 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH--------------cCCCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--------------KRTNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~--------------~~~nI~~~~~D~~~~~ 205 (305)
.+.++.+||+.+||.|..+.+||+. + ..|++||+|+.+++.+.+.+. ...+|+++++|+.++.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~-G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK-G--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC-C--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3456789999999999999999997 2 479999999988777655321 0147999999998875
Q ss_pred ccccCCCcEeEEEEeCC----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 206 KYRMLVGMVDVIFSDVA----QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
........||+|+-... .|+.......++.++|+|+|.+++.+........-++..+-.+++..+-...|.+.
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 32112357999874332 45655555558999999999998887422212233455566677777655555544
No 148
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.09 E-value=1.5e-09 Score=102.27 Aligned_cols=144 Identities=22% Similarity=0.184 Sum_probs=86.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~ 204 (305)
++...+++.+ ...++ +|||+.||.|++++.||+.+. +|+|||+++.+++++.++++.+ .|++++..++.+.
T Consensus 184 ~l~~~~~~~l---~~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 184 KLYEQALEWL---DLSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHC---TT-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHh---hcCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 3444444433 34444 899999999999999999863 8999999998888888888876 7899998776432
Q ss_pred cc----------c---ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHH
Q 021911 205 AK----------Y---RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQ 271 (305)
Q Consensus 205 ~~----------~---~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~ 271 (305)
.. . ......+|+|++|||-.-..+.+...+.+ + . +++|.. | ++. .++..+..|.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~-~--~-~ivYvS---C-----nP~-tlaRDl~~L~ 323 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK-L--K-RIVYVS---C-----NPA-TLARDLKILK 323 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH-S--S-EEEEEE---S------HH-HHHHHHHHHH
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc-C--C-eEEEEE---C-----CHH-HHHHHHHHHh
Confidence 11 0 00123699999999933211111212222 2 2 666665 4 233 3466777776
Q ss_pred HCCCcEeEEeecCCCCCceE
Q 021911 272 QDQFKPFEQVTLEPFERDHA 291 (305)
Q Consensus 272 ~~Gf~~~e~~~l~p~~~~~~ 291 (305)
.+|++.++..++.|.+.+.
T Consensus 324 -~~y~~~~v~~~DmFP~T~H 342 (352)
T PF05958_consen 324 -EGYKLEKVQPVDMFPQTHH 342 (352)
T ss_dssp -CCEEEEEEEEE-SSTTSS-
T ss_pred -hcCEEEEEEEeecCCCCCc
Confidence 4899998888887776443
No 149
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=1.5e-09 Score=96.26 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=87.0
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|-...++..+++.+.+.....+..|||+|||+|..++.++..+. .++|+|||.|+.++.-+.++++.. ..|..++
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 344556666666666544334456999999999999999999884 889999999996655544444433 4566664
Q ss_pred ccCCCC--cccccCCCcEeEEEEeCCC----------------------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 199 EDARHP--AKYRMLVGMVDVIFSDVAQ----------------------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~--~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-+++.. .++..+..+.|++++|+|. .+-...+..-+.++|+|||.+.+.+
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 433221 2222356899999999991 1222223336889999999999998
No 150
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=99.08 E-value=2.7e-10 Score=97.14 Aligned_cols=114 Identities=32% Similarity=0.359 Sum_probs=74.8
Q ss_pred hhHHHHHHHccccccC-CCC--CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccC
Q 021911 125 RSKLAAAVLGGVDNIW-IKP--GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA 201 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~-~~~--g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~ 201 (305)
.|+.+-++.+.++++. +.+ ..+||||||+||.++..+++...+.+.|+|||+.+. ...+++.+++.|+
T Consensus 2 vsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~ 72 (181)
T PF01728_consen 2 VSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDI 72 (181)
T ss_dssp SSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGG
T ss_pred CCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeeccc
Confidence 4445555555555555 444 489999999999999999999756789999999982 2225777778887
Q ss_pred CCCcccc----cC---CCcEeEEEEeCCC--------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 202 RHPAKYR----ML---VGMVDVIFSDVAQ--------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~~----~~---~~~fD~V~~d~~~--------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++..... .+ ...||+|++|++. ......+. -+..+|+|||.|++.+
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~-~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLL-LALELLKPGGTFVIKV 139 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHH-HHHHHHCTTEEEEEEE
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHH-HHHhhhcCCCEEEEEe
Confidence 6543211 11 1589999999951 11222232 4667899999999987
No 151
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.07 E-value=1.7e-09 Score=101.81 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=90.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccc-----c--C-----
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-----M--L----- 210 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~-----~--~----- 210 (305)
.+|||++||+|+++..+++.. ..|++||+++.+++.+.++++.+ .|+.++..|+.+..... . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 479999999999999999885 38999999998877777776655 58999999986643210 0 0
Q ss_pred -CCcEeEEEEeCCChhH-HHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCC
Q 021911 211 -VGMVDVIFSDVAQPDQ-ARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFER 288 (305)
Q Consensus 211 -~~~fD~V~~d~~~~~~-~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~ 288 (305)
...||+|++|+|..-. ..++. .+ ++|...+|+|. ....++..+..|.+ +|++.+...++.|..
T Consensus 276 ~~~~~d~v~lDPPR~G~~~~~l~-~l---~~~~~ivYvsC----------~p~tlaRDl~~L~~-~Y~l~~v~~~DmFP~ 340 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGLDPDTCK-LV---QAYERILYISC----------NPETLKANLEQLSE-THRVERFALFDQFPY 340 (353)
T ss_pred ccCCCCEEEECCCCCCCcHHHHH-HH---HcCCcEEEEEc----------CHHHHHHHHHHHhc-CcEEEEEEEcccCCC
Confidence 1137999999994432 23333 22 34666666663 23446777777764 499998888887776
Q ss_pred ceE
Q 021911 289 DHA 291 (305)
Q Consensus 289 ~~~ 291 (305)
.+.
T Consensus 341 T~H 343 (353)
T TIGR02143 341 THH 343 (353)
T ss_pred CCc
Confidence 443
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=95.83 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=87.3
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..+||||||.|.++.++|.. .|+..+++||+....+..+++.+.+. +||.+++.|+.....+-...+++|.|+++.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999998 48889999999998888888887766 4999999999887665434459999999999
Q ss_pred Chh-----------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPD-----------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~-----------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|+ |...+. .+.+.|||||.|.+.|
T Consensus 129 DPWpKkRH~KRRl~~~~fl~-~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLK-LYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHH-HHHHHccCCCEEEEEe
Confidence 653 566666 7889999999999998
No 153
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.06 E-value=3.7e-09 Score=92.86 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-C-CeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-T-NVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~-nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.+.+|||+|||+|.++..+++.. ..|+++|+|+..+..+.+.+... . ++.+++.|+.+.... ...+||+|+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK--GAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC--CCCCccEEEeh
Confidence 47899999999999999988752 36999999996655554444333 2 588888887655422 13689999986
Q ss_pred CC---ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA---QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. ..+...++. ++.++|+|+|.+++++
T Consensus 120 ~~l~~~~~~~~~l~-~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 120 EVLEHVPDPQAFIR-ACAQLLKPGGILFFST 149 (224)
T ss_pred hHHHhCCCHHHHHH-HHHHhcCCCcEEEEEe
Confidence 54 345666676 9999999999999886
No 154
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=2.6e-09 Score=90.12 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.++.+|||+|||+|.++.++++. ..+|+++|+++.++..+.+.....+++++++.|+.+.... ...||+|++
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~---~~~~d~vi~ 83 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP---KLQPYKVVG 83 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc---ccCCCEEEE
Confidence 5677889999999999999999987 2589999999966655555544346899999999876432 236999999
Q ss_pred eCCChhHHHHHHHHHhc--cCCCCcEEEEEE
Q 021911 220 DVAQPDQARILALNASY--FLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~--~LkpGG~lv~s~ 248 (305)
|+|......++. .+.. .+.+++.|++..
T Consensus 84 n~Py~~~~~~i~-~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 84 NLPYNISTPILF-KLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCCcccHHHHHH-HHHhcCCCcceEEEEEEH
Confidence 999654455555 3332 244777777654
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=99.05 E-value=1.4e-09 Score=95.78 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC--CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~--~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.+|||+|||+|.++..+++.+. +..+|++||+++ .+++.++.+ .++.+++.|+.... ...+||+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~----~Al~~Ar~n~~~~~~~~~D~~~~~----~~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH----TYYKLGKRIVPEATWINADALTTE----FDTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH----HHHHHHHhhccCCEEEEcchhccc----ccCCccEEEE
Confidence 367999999999999999998642 346899999999 556666554 57899999997643 2458999999
Q ss_pred eCCC-----h---------h-HHHHHHHHHhccCCCCcE
Q 021911 220 DVAQ-----P---------D-QARILALNASYFLKAGGH 243 (305)
Q Consensus 220 d~~~-----~---------~-~~~~l~~~a~~~LkpGG~ 243 (305)
|+|. . . ...++. .+.++|++|..
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~-~A~~Ll~~G~~ 158 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIE-RASQIARQGTF 158 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHH-HHHHHcCCCEE
Confidence 9991 1 1 233454 77786766654
No 156
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=2.9e-09 Score=90.55 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++|+++|||||||.|.+..+|.+. .....++||+++ +.+..+.++ .+..++.|+.+... .+.+++||.||+
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~----~~v~~cv~r-Gv~Viq~Dld~gL~-~f~d~sFD~VIl 81 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDP----DNVAACVAR-GVSVIQGDLDEGLA-DFPDQSFDYVIL 81 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCH----HHHHHHHHc-CCCEEECCHHHhHh-hCCCCCccEEeh
Confidence 4689999999999999999999987 457899999999 444444443 57789999866432 245789999997
Q ss_pred eCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccc-----------------------cCCCCchhhh-HHHHHHHHHH
Q 021911 220 DVA---QPDQARILALNASYFLKAGGHFVISIKANC-----------------------IDSTVPAEAV-FQSEVKKLQQ 272 (305)
Q Consensus 220 d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-----------------------i~~~~~~~~v-~~~~~~~l~~ 272 (305)
+-. .....++|. .+|+-|...+++.++-. .-.+.|-... +.+..+..++
T Consensus 82 sqtLQ~~~~P~~vL~----EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLE----EMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred HhHHHhHhHHHHHHH----HHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 655 233445555 44666777777763111 0011122221 2222334478
Q ss_pred CCCcEeEEeecCCCC
Q 021911 273 DQFKPFEQVTLEPFE 287 (305)
Q Consensus 273 ~Gf~~~e~~~l~p~~ 287 (305)
.++++++...+....
T Consensus 158 ~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 158 LGIRIEERVFLDGGR 172 (193)
T ss_pred CCCEEEEEEEEcCCC
Confidence 899999988776654
No 157
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.04 E-value=1.6e-08 Score=91.80 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=95.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+||+||||+|.++..+++.. +..+|++||+++..++.+.+.... .+++++++.|+...... ...+||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--TENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh--CCCCccEE
Confidence 3599999999999998888763 345899999999555444443221 15688888887654322 24689999
Q ss_pred EEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC-C
Q 021911 218 FSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF-E 287 (305)
Q Consensus 218 ~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~-~ 287 (305)
++|.+.+. ..+.+. ++.+.|+|+|.+++.. ++.. .....+......+++. |...... .+..| .
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~-~~~~~L~pgG~lv~~~--~~~~---~~~~~~~~~~~tl~~~-F~~v~~~~~~vp~~~~ 222 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYE-LLKKALNEDGIFVAQS--ESPW---IQLELITDLKRDVKEA-FPITEYYTANIPTYPS 222 (270)
T ss_pred EEeCCCCCCcccchhHHHHHH-HHHHHhCCCcEEEEcC--CCcc---cCHHHHHHHHHHHHHH-CCCeEEEEEEcCcccc
Confidence 99887332 345555 8999999999999875 2211 1233445555666655 6655432 34445 3
Q ss_pred CceEEEEEEE
Q 021911 288 RDHACVVGGY 297 (305)
Q Consensus 288 ~~~~~vv~~~ 297 (305)
..+.++++.+
T Consensus 223 g~~~~~~as~ 232 (270)
T TIGR00417 223 GLWTFTIGSK 232 (270)
T ss_pred chhEEEEEEC
Confidence 4577888876
No 158
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=2.5e-09 Score=93.27 Aligned_cols=98 Identities=30% Similarity=0.431 Sum_probs=73.7
Q ss_pred EEEEEecCCCccHHHHHhhhCCC--cEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCc-ccccCCCcEeEE
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPA-KYRMLVGMVDVI 217 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~--~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~-~~~~~~~~fD~V 217 (305)
+||++|||.|.++..+.+.. ++ ..|+++|+|+++ ++..+++ .++...+.|++.+. ...+..+++|.|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~A----i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRA----IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHH----HHHHHhccccchhhhcccceeccchhccCCCCcCccceE
Confidence 89999999999999998864 34 789999999944 4444443 46777788887765 334456789987
Q ss_pred EE----eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FS----DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~----d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++ .+..|++......++.++|||||.|++..
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 65 33356655544459999999999999975
No 159
>PRK06202 hypothetical protein; Provisional
Probab=99.02 E-value=3.2e-09 Score=94.16 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
.+..+|||+|||+|.++..|++.+ ++..+|+++|+|+ ++++.++++ .++.+.+.|+...+. .+.+||
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~----~~l~~a~~~~~~~~~~~~~~~~~~l~~---~~~~fD 131 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP----RAVAFARANPRRPGVTFRQAVSDELVA---EGERFD 131 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH----HHHHHHHhccccCCCeEEEEecccccc---cCCCcc
Confidence 566899999999999999988754 3445899999999 555555544 467777766654432 246999
Q ss_pred EEEEeCC---Chh--HHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVA---QPD--QARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~---~~~--~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+++.. .++ ..+++. ++.++++ +.+++.
T Consensus 132 ~V~~~~~lhh~~d~~~~~~l~-~~~r~~~--~~~~i~ 165 (232)
T PRK06202 132 VVTSNHFLHHLDDAEVVRLLA-DSAALAR--RLVLHN 165 (232)
T ss_pred EEEECCeeecCChHHHHHHHH-HHHHhcC--eeEEEe
Confidence 9999765 222 345665 8999998 455554
No 160
>PLN02672 methionine S-methyltransferase
Probab=99.02 E-value=4.6e-09 Score=110.01 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=88.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------------------CCeEEEEccCCCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------TNVIPIIEDARHPA 205 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------------------~nI~~~~~D~~~~~ 205 (305)
+.+|||+|||+|..++.++..+ +..+|+++|+|+.++..+.++++.+ .+|.+++.|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999986 4569999999997777666666542 36899999987653
Q ss_pred ccccCCCcEeEEEEeCCC----------h-----h--------------------------HHHHHHHHHhccCCCCcEE
Q 021911 206 KYRMLVGMVDVIFSDVAQ----------P-----D--------------------------QARILALNASYFLKAGGHF 244 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~~----------~-----~--------------------------~~~~l~~~a~~~LkpGG~l 244 (305)
.. ...+||+|++|+|. + + ..+++. ++.++|+|+|.|
T Consensus 198 ~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~-~a~~~L~pgG~l 274 (1082)
T PLN02672 198 RD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE-EGISVIKPMGIM 274 (1082)
T ss_pred cc--cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHH-HHHHhccCCCEE
Confidence 21 11369999999991 0 0 134444 888999999999
Q ss_pred EEEEcccccCCCCchhhhHHHHHH--HHHHCCCcEeEEee
Q 021911 245 VISIKANCIDSTVPAEAVFQSEVK--KLQQDQFKPFEQVT 282 (305)
Q Consensus 245 v~s~~~~~i~~~~~~~~v~~~~~~--~l~~~Gf~~~e~~~ 282 (305)
++.+-. .. .+.+. .+++.||+..+...
T Consensus 275 ~lEiG~-------~q----~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 275 IFNMGG-------RP----GQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred EEEECc-------cH----HHHHHHHHHHHCCCCeeEEee
Confidence 998721 11 11222 44667888766543
No 161
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=1.3e-08 Score=89.66 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++.+|||+|||+|.++..+++.. ..|+++|+|+.++..+.+..... .+|.+++.|+... ..+||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEE
Confidence 4567899999999999999999762 36999999995555544443332 3688998884322 3689999
Q ss_pred EEeCC-----ChhHHHHHHHHHhccCCCCcEE
Q 021911 218 FSDVA-----QPDQARILALNASYFLKAGGHF 244 (305)
Q Consensus 218 ~~d~~-----~~~~~~~l~~~a~~~LkpGG~l 244 (305)
++... .++...++. ++.+.+++++.+
T Consensus 132 ~~~~~l~~~~~~~~~~~l~-~l~~~~~~~~~i 162 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLA-HLASLTRGSLIF 162 (230)
T ss_pred EEcchhhcCCHHHHHHHHH-HHHhhcCCeEEE
Confidence 98543 234445555 777766554433
No 162
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=5.2e-09 Score=78.56 Aligned_cols=97 Identities=31% Similarity=0.319 Sum_probs=73.0
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--CCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+|||+|||+|.++..++.. ...+++++|+++.....+.+.... ..++.++..|+.+... .....||+|+++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--EADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--ccCCceEEEEEccce
Confidence 4899999999999999882 456999999999655544422222 2678899999877653 124689999998884
Q ss_pred h----hHHHHHHHHHhccCCCCcEEEEE
Q 021911 224 P----DQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 224 ~----~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
. ....++. ++.++|+|+|.++++
T Consensus 77 ~~~~~~~~~~l~-~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLE-EARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHH-HHHHHcCCCCEEEEE
Confidence 3 3445555 889999999999876
No 163
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.00 E-value=3.5e-09 Score=95.87 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH--HcCCCeEEEE-ccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA--KKRTNVIPII-EDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a--~~~~nI~~~~-~D~~~~~~~~~~~~~fD~V~ 218 (305)
-.+.+||||||++|.++..++.. ....|+++|.++.....+.... ....+..+.. .-+.+.+. .+.||+||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FDtVF 187 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFDTVF 187 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcCEEE
Confidence 35899999999999999999987 4458999999986655533222 2112222222 23333332 36899999
Q ss_pred EeCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCch-----------hh-h----HHHHHHHHHHCCCcEeE
Q 021911 219 SDVA---QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPA-----------EA-V----FQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 219 ~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~-----------~~-v----~~~~~~~l~~~Gf~~~e 279 (305)
|--. ..+....|. +++..|+|||.|++.|- .++..++. .. . ......+|++.||+.++
T Consensus 188 ~MGVLYHrr~Pl~~L~-~Lk~~L~~gGeLvLETl--vi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 188 SMGVLYHRRSPLDHLK-QLKDSLRPGGELVLETL--VIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred EeeehhccCCHHHHHH-HHHHhhCCCCEEEEEEe--eecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 8554 456677777 88899999999999872 22222211 11 1 12235788999999999
Q ss_pred EeecCC
Q 021911 280 QVTLEP 285 (305)
Q Consensus 280 ~~~l~p 285 (305)
+++..+
T Consensus 265 ~v~~~~ 270 (315)
T PF08003_consen 265 CVDVSP 270 (315)
T ss_pred EecCcc
Confidence 987765
No 164
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.99 E-value=2.7e-09 Score=92.37 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=77.3
Q ss_pred ecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEE
Q 021911 120 IWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIP 196 (305)
Q Consensus 120 ~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~ 196 (305)
.|+|..+.--..+.. ..++++.|||+.||-|.+++.+|..- ....|+|+|++|.+++.|.+.++.+ .+|.+
T Consensus 83 yfs~rl~~Er~Ri~~-----~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~ 156 (200)
T PF02475_consen 83 YFSPRLSTERRRIAN-----LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEV 156 (200)
T ss_dssp ---GGGHHHHHHHHT-----C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEE
T ss_pred EEccccHHHHHHHHh-----cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEE
Confidence 356655555555553 36789999999999999999999852 4568999999999988888888776 56889
Q ss_pred EEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEE
Q 021911 197 IIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 197 ~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
++.|++.... ...||.|+++.|.... +.|. .+..++|++|.+.|
T Consensus 157 ~~~D~~~~~~----~~~~drvim~lp~~~~-~fl~-~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 157 INGDAREFLP----EGKFDRVIMNLPESSL-EFLD-AALSLLKEGGIIHY 200 (200)
T ss_dssp EES-GGG-------TT-EEEEEE--TSSGG-GGHH-HHHHHEEEEEEEEE
T ss_pred EcCCHHHhcC----ccccCEEEECChHHHH-HHHH-HHHHHhcCCcEEEC
Confidence 9999987754 4799999998884332 3444 67789999988764
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.98 E-value=7.5e-09 Score=91.41 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=87.9
Q ss_pred hhhHHHHHHHccccccCC-CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE-EEEccC
Q 021911 124 FRSKLAAAVLGGVDNIWI-KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI-PIIEDA 201 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~-~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~-~~~~D~ 201 (305)
|.|+-+..+...++.+.+ .++.+|||+|||+|.++..+++. ...+|+|||+++.. |...++..+++. +...|+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~---l~~~l~~~~~v~~~~~~ni 129 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQ---LAEKLRQDERVKVLERTNI 129 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHH---HHHHHhcCCCeeEeecCCc
Confidence 566666666665665544 36789999999999999999987 35689999999932 222344445543 444465
Q ss_pred CCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCC---------Cchhh---hHHHHHHH
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDST---------VPAEA---VFQSEVKK 269 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~---------~~~~~---v~~~~~~~ 269 (305)
+....... ..|++.+|++......++. .+..+|+| |.+++-.+....-.. .++.. +..+....
T Consensus 130 ~~~~~~~~---~~d~~~~DvsfiS~~~~l~-~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~ 204 (228)
T TIGR00478 130 RYVTPADI---FPDFATFDVSFISLISILP-ELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDK 204 (228)
T ss_pred ccCCHhHc---CCCceeeeEEEeehHhHHH-HHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHH
Confidence 53322211 1244444444333333555 88899999 888877654331111 01111 22222345
Q ss_pred HHHCCCcEeEEee
Q 021911 270 LQQDQFKPFEQVT 282 (305)
Q Consensus 270 l~~~Gf~~~e~~~ 282 (305)
+.+.||++.....
T Consensus 205 ~~~~~~~~~~~~~ 217 (228)
T TIGR00478 205 GESPDFQEKKIIF 217 (228)
T ss_pred HHcCCCeEeeEEE
Confidence 5677898876553
No 166
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.98 E-value=8.4e-09 Score=88.96 Aligned_cols=95 Identities=23% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++++.+|||+|||+|.++..+++.. ...++++|+|+ ++++.+++ .++.+++.|+.+.... ....+||+|+++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~----~~i~~a~~-~~~~~~~~d~~~~l~~-~~~~sfD~Vi~~ 82 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQ----DGVLACVA-RGVNVIQGDLDEGLEA-FPDKSFDYVILS 82 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCH----HHHHHHHH-cCCeEEEEEhhhcccc-cCCCCcCEEEEh
Confidence 4577899999999999999998763 34789999999 55555554 4688889998652110 134689999997
Q ss_pred CC---ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 221 VA---QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 221 ~~---~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+ .++...++. ++.+.++ .++++
T Consensus 83 ~~l~~~~d~~~~l~-e~~r~~~---~~ii~ 108 (194)
T TIGR02081 83 QTLQATRNPEEILD-EMLRVGR---HAIVS 108 (194)
T ss_pred hHhHcCcCHHHHHH-HHHHhCC---eEEEE
Confidence 66 356666676 6666655 44444
No 167
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=5.6e-09 Score=89.85 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=79.6
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA 201 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~ 201 (305)
.+.+-..+...|. ..-++.+|||++||+|.+++.++.+ ....|++||.++.+++.+.++++.. .+++++..|+
T Consensus 33 ~~~vrea~f~~l~--~~~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 33 TRVVRELFFNILR--PEIQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred hHHHHHHHHHHHH--HhcCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 4444444444333 1235789999999999999999988 2358999999998777666666544 3688999998
Q ss_pred CCCccc-ccCCCcEeEEEEeCCChh--HHHHHHH-HHhccCCCCcEEEEEE
Q 021911 202 RHPAKY-RMLVGMVDVIFSDVAQPD--QARILAL-NASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~-~~~~~~fD~V~~d~~~~~--~~~~l~~-~a~~~LkpGG~lv~s~ 248 (305)
...... ......||+|+.|||... ...++.. .-..+|++++.+++.+
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 553221 001124899999999421 2222221 1235799999888876
No 168
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.97 E-value=1.1e-09 Score=93.64 Aligned_cols=123 Identities=21% Similarity=0.130 Sum_probs=82.4
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|...++-..+...|... .-++.+||||+||+|.+++..+++ ....|+.||.++.++..+.++++.- .++..+.
T Consensus 22 RPT~drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred CCCcHHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 455667767776666532 246899999999999999998887 4569999999998877776666543 3588888
Q ss_pred ccCCCCcc-cccCCCcEeEEEEeCCCh--hH-HHHHHHHHh--ccCCCCcEEEEEE
Q 021911 199 EDARHPAK-YRMLVGMVDVIFSDVAQP--DQ-ARILALNAS--YFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~~~-~~~~~~~fD~V~~d~~~~--~~-~~~l~~~a~--~~LkpGG~lv~s~ 248 (305)
.|+..... .......||+|++|||.. .. .+++. .+. .+|+++|.+++.+
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~-~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLE-LLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHH-HHHHTTSEEEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHH-HHHHCCCCCCCEEEEEEe
Confidence 89754432 111257999999999943 22 34444 443 8999999999987
No 169
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=9.6e-09 Score=94.74 Aligned_cols=124 Identities=21% Similarity=0.180 Sum_probs=91.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc-cCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE-DARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~-D~~~~~~~~~~~~~fD~ 216 (305)
.+++|+.|||-.||||++...+... ...|+++|++.++++....+.+.. ....+... |++..+ . ...+||.
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l--~~~~vda 267 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-L--RDNSVDA 267 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-C--CCCccce
Confidence 6889999999999999999987765 368999999996666544444443 34434444 998876 2 2346999
Q ss_pred EEEeCCC------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 217 IFSDVAQ------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 217 V~~d~~~------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
|++|+|- ....++|. .++++||+||++++..+ .....++.+.+|+++..+...
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le-~~~evLk~gG~~vf~~p--------------~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALE-SASEVLKPGGRIVFAAP--------------RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHH-HHHHHhhcCcEEEEecC--------------CcchhhHhhcCceEEEEEEEe
Confidence 9999991 22455666 89999999999999973 112456678899998876544
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=4.5e-09 Score=88.72 Aligned_cols=88 Identities=22% Similarity=0.124 Sum_probs=66.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
.+++.++........-.+.+|||+|||||.+++..+.. ...+|++||+++++++-+.+++.+. .+|.++++|++++.
T Consensus 29 ~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~ 106 (198)
T COG2263 29 PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR 106 (198)
T ss_pred HHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC
Confidence 44555443222113445789999999999999988866 4569999999997766666666654 57999999998874
Q ss_pred ccccCCCcEeEEEEeCC
Q 021911 206 KYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 206 ~~~~~~~~fD~V~~d~~ 222 (305)
..+|.|+.|+|
T Consensus 107 ------~~~dtvimNPP 117 (198)
T COG2263 107 ------GKFDTVIMNPP 117 (198)
T ss_pred ------CccceEEECCC
Confidence 68899999999
No 171
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.3e-08 Score=83.76 Aligned_cols=126 Identities=14% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
...-+||||||+|..+..|++.+.+.....++|++|++.+..++.|+.+ -++..++.|+..-.. .+++|+++.|+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~----~~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR----NESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc----cCCccEEEECC
Confidence 3678999999999999999999988888999999999988888888766 568899999866532 37999999999
Q ss_pred CC------h-----------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEe
Q 021911 222 AQ------P-----------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPF 278 (305)
Q Consensus 222 ~~------~-----------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~ 278 (305)
|. + +-...|...+-.+|.|.|.|++.+- ... .+.++ ++.++..||...
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~----~~N-~p~ei----~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL----RAN-KPKEI----LKILEKKGYGVR 189 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh----hhc-CHHHH----HHHHhhccccee
Confidence 81 1 1122233367788999999999871 111 12222 455677788765
Q ss_pred EEe
Q 021911 279 EQV 281 (305)
Q Consensus 279 e~~ 281 (305)
...
T Consensus 190 ~~~ 192 (209)
T KOG3191|consen 190 IAM 192 (209)
T ss_pred EEE
Confidence 443
No 172
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.6e-08 Score=85.93 Aligned_cols=124 Identities=23% Similarity=0.165 Sum_probs=86.5
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
.|...++-..+...|..- --++.++||+.||+|...+..+++ ....|+.||.+.++...+.++.+.- .+...+.
T Consensus 23 RPT~drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~ 99 (187)
T COG0742 23 RPTTDRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLR 99 (187)
T ss_pred CCCchHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEe
Confidence 344555555555544410 246899999999999999999988 4568999999997777666665543 5788888
Q ss_pred ccCCCCcccccCCCcEeEEEEeCCChh-----HHHHHHHHHhccCCCCcEEEEEE
Q 021911 199 EDARHPAKYRMLVGMVDVIFSDVAQPD-----QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~~~~~~~~~~~fD~V~~d~~~~~-----~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|+...........+||+|++|+|... +..++...-..+|+|++.+++.+
T Consensus 100 ~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 100 NDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred ecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 888743222111235999999999431 23333334678899999999987
No 173
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.91 E-value=8.2e-09 Score=92.25 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccccc----CCCc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM----LVGM 213 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~----~~~~ 213 (305)
.....+|||||++.|..++++|..+.+.++|+++|.++.....+.+..++. .+|++++.|+.+..+... ..++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 344579999999999999999998877899999999996655544444433 689999999866532210 1268
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||+||.|..-......+. .+.++|+|||.|++-
T Consensus 157 fD~iFiDadK~~Y~~y~~-~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDADKDNYINYHK-RLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCCHHHhHHHHH-HHHHhcCCCeEEEEc
Confidence 999999999666666666 778999999998874
No 174
>PLN02823 spermine synthase
Probab=98.90 E-value=9.1e-08 Score=89.27 Aligned_cols=149 Identities=21% Similarity=0.185 Sum_probs=95.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc------CCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~------~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+||.||+|.|..+..+++.. +..+|++||+++..++-+.+.... .+++++++.|+...... ...+||+|
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--~~~~yDvI 180 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--RDEKFDVI 180 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh--CCCCccEE
Confidence 4799999999999999888753 345899999999444333332211 26799999999876432 24689999
Q ss_pred EEeCCChh---------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCC
Q 021911 218 FSDVAQPD---------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPF 286 (305)
Q Consensus 218 ~~d~~~~~---------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~ 286 (305)
++|.+.|. ..+.+...+.+.|+|+|.|++.. .+... ......+......|++. |...... .+..|
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~--~s~~~-~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPsf 256 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA--GPAGI-LTHKEVFSSIYNTLRQV-FKYVVPYTAHVPSF 256 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec--cCcch-hccHHHHHHHHHHHHHh-CCCEEEEEeecCCC
Confidence 99975431 22334226789999999988754 12111 11123445556666655 6544332 33445
Q ss_pred CCceEEEEEEEcC
Q 021911 287 ERDHACVVGGYRM 299 (305)
Q Consensus 287 ~~~~~~vv~~~~~ 299 (305)
...+.+++|.+..
T Consensus 257 ~~~w~f~~aS~~~ 269 (336)
T PLN02823 257 ADTWGWVMASDHP 269 (336)
T ss_pred CCceEEEEEeCCc
Confidence 4456778887653
No 175
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.89 E-value=1.3e-08 Score=86.90 Aligned_cols=111 Identities=24% Similarity=0.196 Sum_probs=74.3
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCc--------EEEEEeCChHHHHHHHHHHHcC---
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG--------VVYAVEFSHRSGRDLVNMAKKR--- 191 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~--------~V~avD~s~~~~~~l~~~a~~~--- 191 (305)
+.+..+++.++... ..+++..|||..||+|++.+..|....... .++++|+++++++.+.++++..
T Consensus 11 ~L~~~lA~~ll~la---~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLA---GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE 87 (179)
T ss_dssp SS-HHHHHHHHHHT---T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C
T ss_pred CCCHHHHHHHHHHh---CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC
Confidence 45667777776432 467889999999999999999887653222 3899999998877776666554
Q ss_pred CCeEEEEccCCCCcccccCCCcEeEEEEeCCC----------hh-HHHHHHHHHhccCCC
Q 021911 192 TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ----------PD-QARILALNASYFLKA 240 (305)
Q Consensus 192 ~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~----------~~-~~~~l~~~a~~~Lkp 240 (305)
..|.+.+.|+++.+. ..+.+|+|++|+|. .. ...++. ++.++|++
T Consensus 88 ~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~-~~~~~l~~ 143 (179)
T PF01170_consen 88 DYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLR-ELKRVLKP 143 (179)
T ss_dssp GGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHH-HHHCHSTT
T ss_pred CceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHH-HHHHHCCC
Confidence 458899999988862 35799999999992 11 223344 78899999
No 176
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.89 E-value=2.1e-08 Score=82.93 Aligned_cols=119 Identities=24% Similarity=0.196 Sum_probs=90.7
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEcc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIED 200 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D 200 (305)
-|.++.+++.++..+ ++..+.-|||+|.|+|.+|..+.++--+...++++|.|+ ++.....+. +.+.++..|
T Consensus 30 ~PsSs~lA~~M~s~I---~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~----dF~~~L~~~~p~~~ii~gd 102 (194)
T COG3963 30 LPSSSILARKMASVI---DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP----DFVCHLNQLYPGVNIINGD 102 (194)
T ss_pred cCCcHHHHHHHHhcc---CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH----HHHHHHHHhCCCccccccc
Confidence 355777888886533 577788999999999999999998755666899999999 555554443 677889999
Q ss_pred CCCCccc--ccCCCcEeEEEEeCC----Ch-hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 201 ARHPAKY--RMLVGMVDVIFSDVA----QP-DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 201 ~~~~~~~--~~~~~~fD~V~~d~~----~~-~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+...+ ....+.||.|+|.+| .+ ...+++. .+...|.+||.|+-.+
T Consensus 103 a~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile-~~~~rl~~gg~lvqft 156 (194)
T COG3963 103 AFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILE-SLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHH-HHHHhcCCCCeEEEEE
Confidence 8777522 234578999999887 22 3445555 8999999999998877
No 177
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.87 E-value=2.8e-08 Score=92.56 Aligned_cols=123 Identities=21% Similarity=0.179 Sum_probs=82.1
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc--------C---
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------R--- 191 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~--------~--- 191 (305)
+..+.|....+..+. ...++.+|||||||-|.-+.-.... .-..++++|++..++.++.+..+. .
T Consensus 44 wvKs~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~ 119 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRF 119 (331)
T ss_dssp HHHHHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEE
T ss_pred HHHHHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccc
Confidence 344555555543222 1127899999999999987777665 345899999999888887777621 1
Q ss_pred -CCeEEEEccCCCCccc-ccCC--CcEeEEEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 192 -TNVIPIIEDARHPAKY-RMLV--GMVDVIFSDVA------QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 192 -~nI~~~~~D~~~~~~~-~~~~--~~fD~V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
-...++..|....... ...+ .+||+|-|..+ ...+++.+..++...|+|||+|+.+++
T Consensus 120 ~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 120 DFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp CCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2356788887654321 1122 49999999887 456777666699999999999999983
No 178
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.86 E-value=6.7e-08 Score=89.47 Aligned_cols=94 Identities=18% Similarity=0.131 Sum_probs=62.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CCeEEEEccCCCCcccccCCCcEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++...+.++.. .++.+.+.|+... .++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCCcC
Confidence 5789999999999999999986 258999999996655555544332 3567888887543 36899
Q ss_pred EEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|... ......++. .+.. +.+++ ++++.
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~-~l~~-l~~g~-liIs~ 249 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIA-HLAS-LAEKR-LIISF 249 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHH-HHHh-hcCCE-EEEEe
Confidence 9987433 222333443 4443 45554 45543
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.83 E-value=2.8e-08 Score=97.77 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=95.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.....+||||||.|.++.++|... |+..+++||++...+..++..+.+. .|+.++..|+...... +...++|.|++
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEE
Confidence 446799999999999999999985 7889999999998877777776554 6898888887544322 34578999999
Q ss_pred eCCChh-----------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCC-CcEe
Q 021911 220 DVAQPD-----------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQ-FKPF 278 (305)
Q Consensus 220 d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~G-f~~~ 278 (305)
+.|.|+ +...+. ..++.|||||.|.+.| +....+...++.+.+.+ |+..
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~-~~~~~Lk~gG~i~~~T---------D~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLK-ILQDKLKDNGNLVFAS---------DIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHH-HHHHhcCCCCEEEEEc---------CCHHHHHHHHHHHHhCCCeEec
Confidence 999654 555565 7889999999999998 23444444456665554 6654
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-08 Score=86.66 Aligned_cols=110 Identities=27% Similarity=0.408 Sum_probs=82.3
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcE-EEEEeCChHHHHHHHHHHHcC--------------
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGV-VYAVEFSHRSGRDLVNMAKKR-------------- 191 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~-V~avD~s~~~~~~l~~~a~~~-------------- 191 (305)
.+.+.+++.|+. +++|+.+.||+|+|+|+++..++.+++..+. +++||.-+ ++++.++++
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~----eLVe~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP----ELVEYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH----HHHHHHHHHHHhhccCchhhhhh
Confidence 444555555542 4889999999999999999999988887765 49999888 444444432
Q ss_pred --CCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 --TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 --~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.++.+++.|.+..... ..+||.|++-++.+...+.+. ..|+++|.|++..
T Consensus 142 ~~~~l~ivvGDgr~g~~e---~a~YDaIhvGAaa~~~pq~l~----dqL~~gGrllip~ 193 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYAE---QAPYDAIHVGAAASELPQELL----DQLKPGGRLLIPV 193 (237)
T ss_pred ccCceEEEeCCccccCCc---cCCcceEEEccCccccHHHHH----HhhccCCeEEEee
Confidence 3577888998876543 579999999877665554343 6899999999976
No 181
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.83 E-value=2.3e-09 Score=92.75 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=89.3
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCe-EEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNV-IPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI-~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+..+-.++||||||||.+...|.++.. .+++||+|+ .|++.+.++.-- ...++|+..+... .....||+|.
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~----nMl~kA~eKg~YD~L~~Aea~~Fl~~-~~~er~DLi~ 193 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISE----NMLAKAHEKGLYDTLYVAEAVLFLED-LTQERFDLIV 193 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHHh---hccCCchhH----HHHHHHHhccchHHHHHHHHHHHhhh-ccCCcccchh
Confidence 445568999999999999999998864 789999999 888888776211 2334454333221 1246899998
Q ss_pred E-eCC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC--CCchhhhHHH---H-HHHHHHCCCcEeEEeec
Q 021911 219 S-DVA--QPDQARILALNASYFLKAGGHFVISIKANCIDS--TVPAEAVFQS---E-VKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 219 ~-d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~--~~~~~~v~~~---~-~~~l~~~Gf~~~e~~~l 283 (305)
+ |+. .-+...++. -+..+|+|||.|.+|+..-+-+. ...+...++. . ...+...||+++++.+.
T Consensus 194 AaDVl~YlG~Le~~~~-~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 194 AADVLPYLGALEGLFA-GAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhhHHHhhcchhhHHH-HHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 6 443 224555665 88899999999999984333222 1122222221 1 35567899999886543
No 182
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.82 E-value=2.9e-08 Score=89.95 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=84.3
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----C----Ce
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----T----NV 194 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~----nI 194 (305)
+..|+|.... .++++.+||||||-|.-.+-.-.. .-+.++++||++-++.++.+..+.. . .+
T Consensus 105 wIKs~LI~~y--------~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 105 WIKSVLINLY--------TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred HHHHHHHHHH--------hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 3455555544 478899999999999988776654 3458999999987666655444321 2 47
Q ss_pred EEEEccCCCCcccc---cCCCcEeEEEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 195 IPIIEDARHPAKYR---MLVGMVDVIFSDVA------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 195 ~~~~~D~~~~~~~~---~~~~~fD~V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.++.+|.+...... ..+.+||+|-|..+ ...+++++..|+...|||||+|+-++
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 89999986543211 12345999998776 46788888889999999999999987
No 183
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.81 E-value=2.5e-08 Score=94.70 Aligned_cols=100 Identities=20% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|||++||+|..++.+|...+ ...|+++|+++.+++.+.++++.+ .++++++.|+...... ...||+|++|
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lD 132 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDID 132 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEEC
Confidence 357999999999999999998754 348999999998877777766654 5677888898654321 3579999999
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
++ -.....+. .+...++++|.|+++.
T Consensus 133 P~-Gs~~~~l~-~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF-GSPAPFLD-SAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC-CCcHHHHH-HHHHHhcCCCEEEEEe
Confidence 87 23344554 6677899999999984
No 184
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.81 E-value=2.6e-08 Score=87.02 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=75.7
Q ss_pred hhHHHHHHHccccccCCCCCC-EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~-~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~ 203 (305)
.+.+...+. ...++. .++|+|||+|..+..+|.++. +|+|+|+|+ .|++.+++.+++.....-.+.
T Consensus 20 Ptdw~~~ia------~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~----~mL~~a~k~~~~~y~~t~~~m 86 (261)
T KOG3010|consen 20 PTDWFKKIA------SRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSE----AMLKVAKKHPPVTYCHTPSTM 86 (261)
T ss_pred cHHHHHHHH------hhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCH----HHHHHhhcCCCcccccCCccc
Confidence 344555554 233433 899999999999999999864 899999999 889999988766654432211
Q ss_pred C--cccccC--CCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCc-EEEEE
Q 021911 204 P--AKYRML--VGMVDVIFSDVA--QPDQARILALNASYFLKAGG-HFVIS 247 (305)
Q Consensus 204 ~--~~~~~~--~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG-~lv~s 247 (305)
. +....+ ++++|+|+|--+ .-+..+.+. ++.++||+.| .+.+-
T Consensus 87 s~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~-~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 87 SSDEMVDLLGGEESVDLITAAQAVHWFDLERFYK-EAYRVLRKDGGLIAVW 136 (261)
T ss_pred cccccccccCCCcceeeehhhhhHHhhchHHHHH-HHHHHcCCCCCEEEEE
Confidence 1 111112 579999997544 446677776 9999999888 44443
No 185
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.81 E-value=7.2e-08 Score=82.96 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=70.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+...|-|+|||.+..+..+. ..-+|++.|+.. .++ .++.+|+.+.+. .+.++|+++..
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva-----------~n~--~Vtacdia~vPL---~~~svDv~Vfc 129 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA-----------PNP--RVTACDIANVPL---EDESVDVAVFC 129 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH------S---EEEEESS------------SST--TEEES-TTS-S-----TT-EEEEEEE
T ss_pred cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC-----------CCC--CEEEecCccCcC---CCCceeEEEEE
Confidence 3446799999999987664443 334799999976 123 357799987763 36899999987
Q ss_pred CC--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 221 VA--QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 221 ~~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
.+ -.+....+. +|.++|||+|.|.|.....-+. . ...-++.++..||++...-..
T Consensus 130 LSLMGTn~~~fi~-EA~RvLK~~G~L~IAEV~SRf~----~---~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 130 LSLMGTNWPDFIR-EANRVLKPGGILKIAEVKSRFE----N---VKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp S---SS-HHHHHH-HHHHHEEEEEEEEEEEEGGG-S--------HHHHHHHHHCTTEEEEEEE--
T ss_pred hhhhCCCcHHHHH-HHHheeccCcEEEEEEecccCc----C---HHHHHHHHHHCCCeEEecccC
Confidence 77 567777887 9999999999999986321111 1 123356677889999876433
No 186
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.81 E-value=1.1e-07 Score=82.09 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=93.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCe-EEEEccCCCCcccc-----cCCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNV-IPIIEDARHPAKYR-----MLVG 212 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI-~~~~~D~~~~~~~~-----~~~~ 212 (305)
...+.+||||+||||--+.++|..+ |..+-.-.|+++.....+....... +|+ .++..|++...... ....
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 3344469999999999999999998 5666777798886544444444332 454 46778887763221 1246
Q ss_pred cEeEEEE-eCC---ChhHHHHHHHHHhccCCCCcEEEEEEcccccCC-CCchhhhH---------------HHHHHHH-H
Q 021911 213 MVDVIFS-DVA---QPDQARILALNASYFLKAGGHFVISIKANCIDS-TVPAEAVF---------------QSEVKKL-Q 271 (305)
Q Consensus 213 ~fD~V~~-d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~-~~~~~~v~---------------~~~~~~l-~ 271 (305)
+||+|++ |+. .....+.|...+.++|++||.|++.=+...-.. +.+....| .+++..+ +
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~ 181 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAA 181 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHH
Confidence 8999998 333 233444444489999999999998653222110 00111111 1224444 7
Q ss_pred HCCCcEeEEeecCCCCCceEEEEE
Q 021911 272 QDQFKPFEQVTLEPFERDHACVVG 295 (305)
Q Consensus 272 ~~Gf~~~e~~~l~p~~~~~~~vv~ 295 (305)
++|++.++.+++... ..++|-
T Consensus 182 ~~GL~l~~~~~MPAN---N~~Lvf 202 (204)
T PF06080_consen 182 AHGLELEEDIDMPAN---NLLLVF 202 (204)
T ss_pred HCCCccCcccccCCC---CeEEEE
Confidence 789998888766443 444443
No 187
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.7e-07 Score=82.04 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=108.9
Q ss_pred CchhhHHHHHHHccccccCCC-CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE-EEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI-PIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~-~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~-~~~~ 199 (305)
.+|.|+-+-.+...|+.+.+. ++..+||+|+.||.||..+.+. ....|||||+... ++-...+..++|. +...
T Consensus 57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~---Ql~~kLR~d~rV~~~E~t 131 (245)
T COG1189 57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYG---QLHWKLRNDPRVIVLERT 131 (245)
T ss_pred cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCC---ccCHhHhcCCcEEEEecC
Confidence 456777777777777766555 4789999999999999999988 4569999999862 3333344445554 4455
Q ss_pred cCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccc------c------CCCCchhhhHHHHH
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANC------I------DSTVPAEAVFQSEV 267 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~------i------~~~~~~~~v~~~~~ 267 (305)
|++...+.. ..+..|+|++|++......+|- .+..+|+|++.++.-++... + ........+..+..
T Consensus 132 N~r~l~~~~-~~~~~d~~v~DvSFISL~~iLp-~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 132 NVRYLTPED-FTEKPDLIVIDVSFISLKLILP-ALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred ChhhCCHHH-cccCCCeEEEEeehhhHHHHHH-HHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 777665443 3348899999999888888887 99999999999988775433 1 11112222344445
Q ss_pred HHHHHCCCcEeEEee
Q 021911 268 KKLQQDQFKPFEQVT 282 (305)
Q Consensus 268 ~~l~~~Gf~~~e~~~ 282 (305)
+++.+.||++.....
T Consensus 210 ~~~~~~g~~~~gl~~ 224 (245)
T COG1189 210 NFAKELGFQVKGLIK 224 (245)
T ss_pred HHHhhcCcEEeeeEc
Confidence 666788999887653
No 188
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.79 E-value=4.2e-08 Score=89.76 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~ 218 (305)
.+.|+..+||++||.|+.+..+++.+.+.++|+|+|.++.++..+.+.+.+..++++++.|+.+....... ..+||.|+
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 46788999999999999999999998667899999999944444333322224799999999877543211 12799999
Q ss_pred EeCC
Q 021911 219 SDVA 222 (305)
Q Consensus 219 ~d~~ 222 (305)
+|.-
T Consensus 96 ~DLG 99 (296)
T PRK00050 96 LDLG 99 (296)
T ss_pred ECCC
Confidence 8764
No 189
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.78 E-value=1.7e-07 Score=83.17 Aligned_cols=92 Identities=22% Similarity=0.238 Sum_probs=70.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE-eC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS-DV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~-d~ 221 (305)
...++||||||.|..|..++..+. +|+|.|+|+ .|....+++ +...+..| +... ...+||+|.| |+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~----~Mr~rL~~k-g~~vl~~~--~w~~---~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASP----PMRWRLSKK-GFTVLDID--DWQQ---TDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCH----HHHHHHHhC-CCeEEehh--hhhc---cCCceEEEeehhh
Confidence 357899999999999999999875 799999999 666666664 44433322 2221 1358999998 44
Q ss_pred C--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 A--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. |..+..+|. .+++.|+|+|++++++
T Consensus 161 LDRc~~P~~LL~-~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 161 LDRCDRPLTLLR-DIRRALKPNGRLILAV 188 (265)
T ss_pred hhccCCHHHHHH-HHHHHhCCCCEEEEEE
Confidence 4 677777777 9999999999999976
No 190
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.76 E-value=9.2e-08 Score=88.00 Aligned_cols=180 Identities=17% Similarity=0.245 Sum_probs=122.1
Q ss_pred CccccCcceeEeecCCCceeeeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEe
Q 021911 97 GEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVE 175 (305)
Q Consensus 97 ~~~~y~e~~~~~~d~~~~~~~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD 175 (305)
..++|-++-..+...| |||.. ..|+-..+. ..+...+||-+|-|.|-....+.+. | -.+|+-||
T Consensus 256 d~rLYldG~LQfsTrD----e~RYh----EsLV~pals-----~~~~a~~vLvlGGGDGLAlRellky--P~~~qI~lVd 320 (508)
T COG4262 256 DLRLYLDGGLQFSTRD----EYRYH----ESLVYPALS-----SVRGARSVLVLGGGDGLALRELLKY--PQVEQITLVD 320 (508)
T ss_pred ceEEEEcCceeeeech----hhhhh----heeeecccc-----cccccceEEEEcCCchHHHHHHHhC--CCcceEEEEe
Confidence 3567777766555432 44332 222222221 3455689999999999998888887 4 56899999
Q ss_pred CChHHHHHHHHHHHcC-------------CCeEEEEccCCCCcccccCCCcEeEEEEeCCChh--------HHHHHHHHH
Q 021911 176 FSHRSGRDLVNMAKKR-------------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD--------QARILALNA 234 (305)
Q Consensus 176 ~s~~~~~~l~~~a~~~-------------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~--------~~~~l~~~a 234 (305)
++| +|++.+++. ++++.+..|+.++... ..++||+||.|.+.|+ ..+... .+
T Consensus 321 LDP----~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY~-ll 393 (508)
T COG4262 321 LDP----RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--AADMFDVVIVDLPDPSTPSIGRLYSVEFYR-LL 393 (508)
T ss_pred cCH----HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--hcccccEEEEeCCCCCCcchhhhhhHHHHH-HH
Confidence 999 555555422 6799999999877543 2469999999998553 223333 57
Q ss_pred hccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCCCCC
Q 021911 235 SYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 303 (305)
Q Consensus 235 ~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~~~ 303 (305)
.+.|+++|.+++.. .+ +-....+|......++++||...-..-.-|--.++-++++.......+
T Consensus 394 ~~~l~e~Gl~VvQa--gs---~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~~fe 457 (508)
T COG4262 394 SRHLAETGLMVVQA--GS---PYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDADFE 457 (508)
T ss_pred HHhcCcCceEEEec--CC---CccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccCCCC
Confidence 78999999999975 11 112234566667888999999887665555557888888877655443
No 191
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.72 E-value=5.8e-08 Score=93.96 Aligned_cols=97 Identities=27% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCEEEEEecCCCccHHHHHhh---hCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~---~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
...|||+|||+|.++...++. .+...+|||||-++.+...+.+.++.+ .+|++++.|+++... +.++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----PEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----SS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----CCceeEE
Confidence 578999999999998776654 233569999999997766655553333 689999999999863 4699999
Q ss_pred EEeCC-----ChhHHHHHHHHHhccCCCCcEEE
Q 021911 218 FSDVA-----QPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 218 ~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
++... .....+.|. .+.++|||+|.++
T Consensus 263 VSElLGsfg~nEl~pE~Ld-a~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLD-AADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHH-HGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHH-HHHhhcCCCCEEe
Confidence 99665 344556776 8899999998764
No 192
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.71 E-value=1.7e-07 Score=84.52 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.++.+|||+|||+|.++..+++.. .+|+++|+++..+..+.+.+...+|+.+++.|+...+. ..||.|++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~-----~~~d~Vv~ 97 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL-----PEFNKVVS 97 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc-----hhceEEEE
Confidence 46678999999999999999999882 48999999996665555544434689999999987542 35799999
Q ss_pred eCCChh
Q 021911 220 DVAQPD 225 (305)
Q Consensus 220 d~~~~~ 225 (305)
|+|...
T Consensus 98 NlPy~i 103 (258)
T PRK14896 98 NLPYQI 103 (258)
T ss_pred cCCccc
Confidence 999443
No 193
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.69 E-value=2.3e-07 Score=84.31 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=68.6
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.++..+++.+ .+.++.+|||+|||+|.++..+++.. .+|+++|+++.++..+.+.... ++++++++|+...+.
T Consensus 29 ~i~~~i~~~l---~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAA---GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhc---CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCCH
Confidence 3444454333 46788999999999999999999984 2899999999555554443322 689999999987642
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHH
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
.. -.+|.|++|+|...-..++.
T Consensus 102 ~~---~~~~~vv~NlPY~iss~ii~ 123 (272)
T PRK00274 102 SE---LQPLKVVANLPYNITTPLLF 123 (272)
T ss_pred HH---cCcceEEEeCCccchHHHHH
Confidence 21 11599999999665566665
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.68 E-value=2.3e-07 Score=85.82 Aligned_cols=155 Identities=18% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhh------CCCcEEEEEeCChHHHHHHH-HHHHcC---CCeEEEEccCCCCccccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIV------GPNGVVYAVEFSHRSGRDLV-NMAKKR---TNVIPIIEDARHPAKYRM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~------~~~~~V~avD~s~~~~~~l~-~~a~~~---~nI~~~~~D~~~~~~~~~ 209 (305)
.+.++.+|||.+||+|.+...+.+.+ ....+++++|+++..+.-+. .+.-.. .++.+.+.|....+...
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~- 121 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI- 121 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-
Confidence 56778899999999999999988754 24568999999985533221 111111 34567788876554321
Q ss_pred CCCcEeEEEEeCCCh-----------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHH
Q 021911 210 LVGMVDVIFSDVAQP-----------------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSE 266 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~-----------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~ 266 (305)
....||+|++|+|.- ...-.+..++.+.||++|++++.++...+.... .. ...
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~-~~---~~i 197 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSS-SE---KKI 197 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGST-HH---HHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccc-hH---HHH
Confidence 246899999999910 111234448999999999999988533322211 11 112
Q ss_pred HHHHHHCCCcEeEEeecCC-----CCCceEEEEEEEcCC
Q 021911 267 VKKLQQDQFKPFEQVTLEP-----FERDHACVVGGYRMP 300 (305)
Q Consensus 267 ~~~l~~~Gf~~~e~~~l~p-----~~~~~~~vv~~~~~~ 300 (305)
.+.|.+. +.+..++.+.+ ..-.-++++..+.++
T Consensus 198 R~~ll~~-~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 198 RKYLLEN-GYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHHHHH-EEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred HHHHHhh-chhhEEeecccceecccCcCceEEEEeeccc
Confidence 3444333 34556665532 233445555665553
No 195
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.66 E-value=7.7e-07 Score=76.89 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=91.8
Q ss_pred hHHHHHHHccccccCCCC--CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC-CeEEEEccCC
Q 021911 126 SKLAAAVLGGVDNIWIKP--GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDAR 202 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~--g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~-nI~~~~~D~~ 202 (305)
..++...|+.|+ +++ ..-|||||||+|..+..+.+. .-..++||+|+ .|++.+.++. .-.++.+|+-
T Consensus 34 ~em~eRaLELLa---lp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSp----sML~~a~~~e~egdlil~DMG 103 (270)
T KOG1541|consen 34 AEMAERALELLA---LPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISP----SMLEQAVERELEGDLILCDMG 103 (270)
T ss_pred HHHHHHHHHHhh---CCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCH----HHHHHHHHhhhhcCeeeeecC
Confidence 345555444443 333 678999999999999888876 24789999999 6666666531 1357888886
Q ss_pred CCcccccCCCcEeEEEEeCC------------Ch--hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHH
Q 021911 203 HPAKYRMLVGMVDVIFSDVA------------QP--DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVK 268 (305)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~~------------~~--~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~ 268 (305)
...+. .+++||.||+-.+ .| .....+. ..+.+|+++++.++..+ .++...+ ....+
T Consensus 104 ~Glpf--rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~-tLy~~l~rg~raV~QfY------pen~~q~-d~i~~ 173 (270)
T KOG1541|consen 104 EGLPF--RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFG-TLYSCLKRGARAVLQFY------PENEAQI-DMIMQ 173 (270)
T ss_pred CCCCC--CCCccceEEEeeeeeeecccCccccChHHHHHHHhh-hhhhhhccCceeEEEec------ccchHHH-HHHHH
Confidence 54443 4789999986333 11 1223343 67889999999999873 2333332 12233
Q ss_pred HHHHCCCcEeEEeecCC--CCCceEEEE
Q 021911 269 KLQQDQFKPFEQVTLEP--FERDHACVV 294 (305)
Q Consensus 269 ~l~~~Gf~~~e~~~l~p--~~~~~~~vv 294 (305)
....+||----+++... -.+.+++|+
T Consensus 174 ~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 174 QAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred HHHhhccCCceeeecccccccceeEEEE
Confidence 44457776444444421 224555555
No 196
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=8.3e-08 Score=91.97 Aligned_cols=158 Identities=15% Similarity=0.066 Sum_probs=99.2
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
++....|...+-+++ .+..+..+||+|||||++.+.+|+.+. .|++||+++.++.++..+|+.+ .|.+|+++
T Consensus 365 t~~aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred cHHHHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 344444444443322 567789999999999999999999864 8999999998888888888877 79999999
Q ss_pred cCCCCccccc--CCCcEe-EEEEeCCChhHHHHHHHHHhccCC-CCcEEEEEEcccccCCC-CchhhhHHHHHHHHHHCC
Q 021911 200 DARHPAKYRM--LVGMVD-VIFSDVAQPDQARILALNASYFLK-AGGHFVISIKANCIDST-VPAEAVFQSEVKKLQQDQ 274 (305)
Q Consensus 200 D~~~~~~~~~--~~~~fD-~V~~d~~~~~~~~~l~~~a~~~Lk-pGG~lv~s~~~~~i~~~-~~~~~v~~~~~~~l~~~G 274 (305)
-+.++-+... ..++=+ ++++|+|.+-....+. ++.+..+ +- +|+|.+ |+.... .+....+.........-.
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~i-k~l~~~~~~~-rlvyvS--Cn~~t~ar~v~~lc~~~~~~~~~g~ 514 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVI-KALRAYKNPR-RLVYVS--CNPHTAARNVIDLCSSPKYRLKKGF 514 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCCcccccHHHH-HHHHhccCcc-ceEEEE--cCHHHhhhhHHHhhcCccccccccc
Confidence 6655433211 112445 7788999765555555 4444444 44 566665 553321 122222222222333445
Q ss_pred CcEeEEeecCCCCCc
Q 021911 275 FKPFEQVTLEPFERD 289 (305)
Q Consensus 275 f~~~e~~~l~p~~~~ 289 (305)
|++.+.+.++.|.+.
T Consensus 515 fr~~~~~~VDlfP~T 529 (534)
T KOG2187|consen 515 FRLVKAVGVDLFPHT 529 (534)
T ss_pred cceeeeeecccCCCC
Confidence 778777765555544
No 197
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.65 E-value=3.4e-07 Score=82.32 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=70.6
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.+...+++.+ .+.++.+|||+|||+|.++..+++... .|+++|+++..+..+.+.....+++++++.|+...+.
T Consensus 16 ~i~~~i~~~~---~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 16 SVIQKIVEAA---NVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHhc---CCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence 3444554333 466789999999999999999999852 6999999996655544443333689999999987653
Q ss_pred cccCCCcEe---EEEEeCCChhHHHHHHHHHhc
Q 021911 207 YRMLVGMVD---VIFSDVAQPDQARILALNASY 236 (305)
Q Consensus 207 ~~~~~~~fD---~V~~d~~~~~~~~~l~~~a~~ 236 (305)
. .+| +|++|+|...-..++. +...
T Consensus 90 ~-----~~d~~~~vvsNlPy~i~~~il~-~ll~ 116 (253)
T TIGR00755 90 P-----DFPKQLKVVSNLPYNISSPLIF-KLLE 116 (253)
T ss_pred h-----HcCCcceEEEcCChhhHHHHHH-HHhc
Confidence 2 455 9999999766666666 4443
No 198
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.62 E-value=3.4e-07 Score=77.65 Aligned_cols=133 Identities=20% Similarity=0.187 Sum_probs=72.2
Q ss_pred ceeeeeecCchhhHHHHHHHcccc---ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc
Q 021911 114 TKVEYRIWNPFRSKLAAAVLGGVD---NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK 190 (305)
Q Consensus 114 ~~~~~~~~~~~~s~l~a~ll~~l~---~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~ 190 (305)
.-...+.|+. .-.|+..++.... ......+.+|||||||+|..++.+|... ....|+..|.++ .+..+..+++.
T Consensus 14 ~~~G~~vW~a-a~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 14 DGTGGKVWPA-ALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp ---------H-HHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred cCCcEEEech-HHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence 3457888854 4455555554210 1245567899999999999999998874 456899999998 55555555544
Q ss_pred C-----CCeEEEEccCCCCccccc-CCCcEeEEEE-eCC-ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 191 R-----TNVIPIIEDARHPAKYRM-LVGMVDVIFS-DVA-QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 191 ~-----~nI~~~~~D~~~~~~~~~-~~~~fD~V~~-d~~-~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+ .++.+...|..+...... ...+||+|++ |.. .+...+.|...+.++|++++.++++.+
T Consensus 91 N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 91 NGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp T--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2 567888888765331111 2358999996 444 344444455478899999999888763
No 199
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.60 E-value=2e-06 Score=79.75 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=56.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC----CeEEEE-ccCCCCccc-ccCCCcEeE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----NVIPII-EDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~----nI~~~~-~D~~~~~~~-~~~~~~fD~ 216 (305)
+..+|||||||+|.....++... +..+++|+|+++.+++.+.++++.++ +|.+++ .|....... ......||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 46899999999998888887764 46799999999987777777766652 466654 333222111 012458999
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+||+|
T Consensus 193 ivcNPP 198 (321)
T PRK11727 193 TLCNPP 198 (321)
T ss_pred EEeCCC
Confidence 999999
No 200
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.60 E-value=2.1e-07 Score=84.87 Aligned_cols=98 Identities=23% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+..|||+|||+|.++...|.. ...+|||||.|+ +...+.+..+.+ ++|..|..-+.+.. +++++|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie----LPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE----LPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc----CchhccEEEe
Confidence 4689999999999999888877 466999999995 222222222222 56888877766653 4689999999
Q ss_pred eCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+. .....+... .|.++|||.|.++=..
T Consensus 250 EPMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYL-HARKWLKPNGKMFPTV 282 (517)
T ss_pred ccchhhhhhHHHHHHHH-HHHhhcCCCCcccCcc
Confidence 887 233445555 7889999999987654
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.60 E-value=5.2e-08 Score=81.40 Aligned_cols=75 Identities=17% Similarity=0.049 Sum_probs=51.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
..|||++||.|..+.++|..+. .|+|||+++.+++-+..+++.. ++|.++++|+.+..........+|+||+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999853 8999999997777666666655 589999999977643211112289999999
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
|
T Consensus 78 P 78 (163)
T PF09445_consen 78 P 78 (163)
T ss_dssp -
T ss_pred C
Confidence 9
No 202
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.59 E-value=2.4e-07 Score=87.64 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
+.+|||+.||+|..++.++........|+++|+++.+++.+.++++.+ .++++++.|+...... ....||+|++|+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--RNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--hCCCCCEEEeCC
Confidence 358999999999999999987533358999999998888877777655 4688999998766432 135799999999
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
. ......+. .+.+.++++|.|+++
T Consensus 123 f-Gs~~~fld-~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F-GTPAPFVD-SAIQASAERGLLLVT 146 (374)
T ss_pred C-CCcHHHHH-HHHHhcccCCEEEEE
Confidence 5 33345555 788899999999997
No 203
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.59 E-value=3.6e-07 Score=83.90 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.+.++.+|||+|||+|.+|..+++.. .+|+++|++++.+..+.+.... .+++++++.|+...+ ...||+
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-----~~~~d~ 104 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-----FPYFDV 104 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-----ccccCE
Confidence 56788999999999999999999873 4799999999666666555443 268999999997653 246899
Q ss_pred EEEeCCChhHHHHHH
Q 021911 217 IFSDVAQPDQARILA 231 (305)
Q Consensus 217 V~~d~~~~~~~~~l~ 231 (305)
|++|+|......++.
T Consensus 105 VvaNlPY~Istpil~ 119 (294)
T PTZ00338 105 CVANVPYQISSPLVF 119 (294)
T ss_pred EEecCCcccCcHHHH
Confidence 999999544444444
No 204
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=6.2e-07 Score=78.03 Aligned_cols=116 Identities=18% Similarity=0.217 Sum_probs=89.2
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA 201 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~ 201 (305)
..++.+.++ .+...+++||||.=+|..++.+|..+.+.++|+++|+++...+-..+..+.. ..|.+++.++
T Consensus 61 ~g~fl~~li------~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLI------RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred HHHHHHHHH------HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 445555554 3445689999999999999999999999999999999986655444444433 6799999887
Q ss_pred CCCccc---ccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 202 RHPAKY---RMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 202 ~~~~~~---~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+.... ....+.||++|+|.--.+....+. ++.++||+||.|++-
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e-~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYE-RLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHH-HHHhhcccccEEEEe
Confidence 654321 113579999999999777776666 899999999999885
No 205
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.56 E-value=7.5e-07 Score=79.84 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------------------------------C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------------------T 192 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------------------------------~ 192 (305)
.+.++||+||||=..-..-|.. ---+|+..|+++...+++.+..++. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4679999999994432222212 2237999999998877666555432 1
Q ss_pred CeE-EEEccCCCCccccc---CCCcEeEEEEeCC----Ch---hHHHHHHHHHhccCCCCcEEEEEEccccc----CCCC
Q 021911 193 NVI-PIIEDARHPAKYRM---LVGMVDVIFSDVA----QP---DQARILALNASYFLKAGGHFVISIKANCI----DSTV 257 (305)
Q Consensus 193 nI~-~~~~D~~~~~~~~~---~~~~fD~V~~d~~----~~---~~~~~l~~~a~~~LkpGG~lv~s~~~~~i----~~~~ 257 (305)
.|. ++.+|++..++... ++.+||+|++... ++ ...+.+. ++.++|||||+|++.....+. ....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~-ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~ 212 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALR-NISSLLKPGGHLILAGVLGSTYYMVGGHK 212 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHH-HHHTTEEEEEEEEEEEESS-SEEEETTEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHH-HHHHHcCCCcEEEEEEEcCceeEEECCEe
Confidence 233 66789988776543 2346999998665 32 3445555 999999999999997632221 1111
Q ss_pred chhhhHH-HH-HHHHHHCCCcEeEEee
Q 021911 258 PAEAVFQ-SE-VKKLQQDQFKPFEQVT 282 (305)
Q Consensus 258 ~~~~v~~-~~-~~~l~~~Gf~~~e~~~ 282 (305)
.+...+. +. .+.|+++||.+.+...
T Consensus 213 F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 213 FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 1111111 11 4667899999887764
No 206
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.55 E-value=3.2e-06 Score=78.19 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=69.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+.+++++|||||+||.+|..+++. ...|+|||..+ |.......++|+.+..|.....+. ...+|+|+||
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~~~~~V~h~~~d~fr~~p~---~~~vDwvVcD 277 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLMDTGQVEHLRADGFKFRPP---RKNVDWLVCD 277 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhhCCCCEEEEeccCcccCCC---CCCCCEEEEe
Confidence 468999999999999999999987 24999999765 334445558899999988665432 4689999999
Q ss_pred CCC-hhHHHHHHHHHhccCCCC--cEEEEEEc
Q 021911 221 VAQ-PDQARILALNASYFLKAG--GHFVISIK 249 (305)
Q Consensus 221 ~~~-~~~~~~l~~~a~~~LkpG--G~lv~s~~ 249 (305)
+.+ |. +++. -+.++|..| ..+|+..|
T Consensus 278 mve~P~--rva~-lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 278 MVEKPA--RVAE-LMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred cccCHH--HHHH-HHHHHHhcCcccEEEEEEE
Confidence 994 33 2232 344566555 35666664
No 207
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=3.5e-07 Score=80.00 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=66.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEc------------------
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIE------------------ 199 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~------------------ 199 (305)
.....+|||||-+|.+|.++|+.+++. .|++|||++ .+++.|.+. ...+..+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~----~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDP----VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccH----HHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 346789999999999999999999754 799999999 455555443 11111111
Q ss_pred --------cCCCC-------------cccccCCCcEeEEEEeCC-------C--hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 200 --------DARHP-------------AKYRMLVGMVDVIFSDVA-------Q--PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 200 --------D~~~~-------------~~~~~~~~~fD~V~~d~~-------~--~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+.+. +...+....||+|+|-.. + .-..+.+. ++.++|.|||+|++.-
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~-kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFR-KISSLLHPGGILVVEP 209 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHH-HHHHhhCcCcEEEEcC
Confidence 11000 000122458999998333 2 23556666 9999999999999974
No 208
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.53 E-value=1.1e-06 Score=77.50 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.....|.|+|||.+-.++ . ..-.|+++|+.+ .|-.++.+|++..+. .+.++|+++.+.
T Consensus 179 ~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl---~d~svDvaV~CL 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA-------------VNERVIACDMRNVPL---EDESVDVAVFCL 236 (325)
T ss_pred cCceEEEecccchhhhhh----c--cccceeeeeeec-------------CCCceeeccccCCcC---ccCcccEEEeeH
Confidence 345789999999976655 2 223799999876 244678899988763 368999998866
Q ss_pred C--ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 222 A--QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 222 ~--~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+ -.+....+. +|.++||+||.|+|... .+.-..- ...+..|...||++....
T Consensus 237 SLMgtn~~df~k-Ea~RiLk~gG~l~IAEv----~SRf~dv---~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMGTNLADFIK-EANRILKPGGLLYIAEV----KSRFSDV---KGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhcccHHHHHH-HHHHHhccCceEEEEeh----hhhcccH---HHHHHHHHHcCCeeeehh
Confidence 6 567777777 99999999999999862 1111111 123566778899887544
No 209
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.53 E-value=3.7e-06 Score=75.35 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=94.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHH------cCCCeEEEEccCCCCcccccCCC-cEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVG-MVD 215 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~------~~~nI~~~~~D~~~~~~~~~~~~-~fD 215 (305)
...+||-||-|.|..+..+.+.- +-.+|+.||+++..++-+.+... ..+++++++.|+....... .. +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~--~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET--QEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS--SST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc--cCCccc
Confidence 46899999999999999998773 34589999999944433333221 1268999999997765432 34 899
Q ss_pred EEEEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE--EeecCCC
Q 021911 216 VIFSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE--QVTLEPF 286 (305)
Q Consensus 216 ~V~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e--~~~l~p~ 286 (305)
+|++|...|. ..+.+. .+.+.|+|+|.+++.. .+.. .....+....+.+++. |.... ...+..|
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~-~~~~~L~~~Gv~v~~~--~~~~---~~~~~~~~i~~tl~~~-F~~v~~~~~~vP~~ 225 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQ-LCKRRLKPDGVLVLQA--GSPF---LHPELFKSILKTLRSV-FPQVKPYTAYVPSY 225 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHH-HHHHHEEEEEEEEEEE--EETT---TTHHHHHHHHHHHHTT-SSEEEEEEEECTTS
T ss_pred EEEEeCCCCCCCcccccCHHHHH-HHHhhcCCCcEEEEEc--cCcc---cchHHHHHHHHHHHHh-CCceEEEEEEcCee
Confidence 9999888432 345555 8999999999999976 2221 1233445556667666 44333 2345556
Q ss_pred CCc-eEEEEEEEcC
Q 021911 287 ERD-HACVVGGYRM 299 (305)
Q Consensus 287 ~~~-~~~vv~~~~~ 299 (305)
... +.++++++..
T Consensus 226 ~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 226 GSGWWSFASASKDI 239 (246)
T ss_dssp CSSEEEEEEEESST
T ss_pred cccceeEEEEeCCC
Confidence 665 4455555544
No 210
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.52 E-value=2.3e-06 Score=76.14 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+..+..+|||||+|+|.++..+++.. |..+++.+|+ | ..++.+++.++|+++..|+.+.. +. +|+|+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p----~v~~~~~~~~rv~~~~gd~f~~~-----P~-~D~~~ 163 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-P----EVIEQAKEADRVEFVPGDFFDPL-----PV-ADVYL 163 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--H----HHHCCHHHTTTEEEEES-TTTCC-----SS-ESEEE
T ss_pred ccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-H----hhhhccccccccccccccHHhhh-----cc-cccee
Confidence 355666899999999999999999986 7889999999 5 34444444679999999998332 34 99998
Q ss_pred EeCC----ChhHHHHHHHHHhccCCCC--cEEEEEE
Q 021911 219 SDVA----QPDQARILALNASYFLKAG--GHFVISI 248 (305)
Q Consensus 219 ~d~~----~~~~~~~l~~~a~~~LkpG--G~lv~s~ 248 (305)
+.-. .+++...+..+++..|+|| |+|+|..
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 7433 2344444444999999999 9999987
No 211
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.49 E-value=9.9e-07 Score=82.62 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=92.4
Q ss_pred eeeeeecC---chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC------------------------
Q 021911 115 KVEYRIWN---PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP------------------------ 167 (305)
Q Consensus 115 ~~~~~~~~---~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~------------------------ 167 (305)
+-.||+.+ |....|++.|+. |. ..+++..++|.-||+|++.+..|.+...
T Consensus 163 kRGyR~~~g~ApLketLAaAil~-la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~ 239 (381)
T COG0116 163 KRGYRVYDGPAPLKETLAAAILL-LA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK 239 (381)
T ss_pred hccccccCCCCCchHHHHHHHHH-Hc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence 33555554 667788888874 33 4566789999999999999999877421
Q ss_pred -------Cc-------EEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------
Q 021911 168 -------NG-------VVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ------- 223 (305)
Q Consensus 168 -------~~-------~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~------- 223 (305)
.. .++++|+++++++.+..++..- +.|+|.+.|++.+.+. ...+|+||||+|.
T Consensus 240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCCh
Confidence 11 3779999997777766666654 6799999999887643 2689999999991
Q ss_pred ---hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 224 ---PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 224 ---~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
....+.|...+++.++.-..+++++
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 1123334435668888888888886
No 212
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.8e-07 Score=75.60 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=71.8
Q ss_pred chhhHHHHHHHccccccC-CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEcc
Q 021911 123 PFRSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIED 200 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~-~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D 200 (305)
|.++.+++.++..+.+.. .-.+++++|||||.|.++...+.. ..-.|+++|++|.+++-+..++.+- -++.+.++|
T Consensus 27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd 104 (185)
T KOG3420|consen 27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD 104 (185)
T ss_pred CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeee
Confidence 447788888887776442 256899999999999998665543 3458999999996665555555443 478899999
Q ss_pred CCCCcccccCCCcEeEEEEeCC
Q 021911 201 ARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.++... ...||.++.|+|
T Consensus 105 ildle~~---~g~fDtaviNpp 123 (185)
T KOG3420|consen 105 ILDLELK---GGIFDTAVINPP 123 (185)
T ss_pred ccchhcc---CCeEeeEEecCC
Confidence 9887643 378999999999
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.49 E-value=3.9e-06 Score=71.80 Aligned_cols=124 Identities=22% Similarity=0.215 Sum_probs=85.5
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+|||+|+|.|.-...+|-.. |+.+|+-+|.+.+.+.-+...+.+- +|+++++..+.+. .....||+|++-+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP----EYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT----TTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc----ccCCCccEEEeehhc
Confidence 89999999999999999775 7889999999987655555444433 7899999988771 125799999998887
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 224 PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
+.. .++. -+..+|+++|++++.-- .+...-..+....++..++++..+..+
T Consensus 126 ~l~-~l~~-~~~~~l~~~G~~l~~KG-------~~~~~El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 126 PLD-KLLE-LARPLLKPGGRLLAYKG-------PDAEEELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp SHH-HHHH-HHGGGEEEEEEEEEEES-------S--HHHHHTHHHHHHCCCEEEEEEEEE
T ss_pred CHH-HHHH-HHHHhcCCCCEEEEEcC-------CChHHHHHHHHhHHHHhCCEEeeeccc
Confidence 653 4444 78899999999988751 111122222334455566666665544
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.46 E-value=5.9e-06 Score=74.52 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcC--CCe-EEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKR--TNV-IPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~--~nI-~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..-+||||+||+|...+.+...... .-+|.-.|+|+..++.-.++++++ .+| .|.+.|+.+...+..+....|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3479999999999999988877643 257888999998888888888776 555 999999999877766667789888
Q ss_pred EeCC---Chh---HHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA---QPD---QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~---~~~---~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.-. .+| -.+.+. -+...|.|||+|++.-
T Consensus 215 VsGL~ElF~Dn~lv~~sl~-gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLA-GLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHH-HHHHHhCCCcEEEEcC
Confidence 7544 222 233454 7889999999999985
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.45 E-value=3.8e-06 Score=76.49 Aligned_cols=100 Identities=27% Similarity=0.351 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----------CCeEEEEccCCCCccccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----------TNVIPIIEDARHPAKYRM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----------~nI~~~~~D~~~~~~~~~ 209 (305)
+..| .+||-||-|.|.++..++++. +--+++.||+++ ++++.+++. +++..+..|..++...
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~----~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-- 145 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDP----AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-- 145 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCH----HHHHHHHHhccCcccccCCCceEEEeccHHHHHHh--
Confidence 5566 699999999999999999985 345899999999 666666553 5788889998776543
Q ss_pred CCCcEeEEEEeCCCh-------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 210 LVGMVDVIFSDVAQP-------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~-------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+||+|++|...| ...+.+. .+++.|+++|.++..+
T Consensus 146 ~~~~fDvIi~D~tdp~gp~~~Lft~eFy~-~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 146 CEEKFDVIIVDSTDPVGPAEALFTEEFYE-GCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCcCCEEEEcCCCCCCcccccCCHHHHH-HHHHhcCCCcEEEEec
Confidence 134899999988755 2455565 9999999999999985
No 216
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.42 E-value=4.3e-06 Score=72.44 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=81.3
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE-----
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS----- 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~----- 219 (305)
.++||+||=+-......... ..|++||+++. .-.+.++|+.+.+......+.||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~-------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ-------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC-------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 69999999765544443333 36999999871 223567888665432223578999876
Q ss_pred eCCChhHHHHHHHHHhccCCCCcE-----EEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec
Q 021911 220 DVAQPDQARILALNASYFLKAGGH-----FVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL 283 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~-----lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l 283 (305)
.+|.|.+.-.+..+++++|+|.|. |+++++..|+........ ......|...||..++....
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~--~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTE--ERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCH--HHHHHHHHhCCcEEEEEEec
Confidence 445777776666699999999999 999999888543322211 12235567899998887533
No 217
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=2.8e-06 Score=72.06 Aligned_cols=141 Identities=23% Similarity=0.244 Sum_probs=83.8
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCCh------HHHHHHHHHHHc--CCCeEEEEccCCCCcccccC
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH------RSGRDLVNMAKK--RTNVIPIIEDARHPAKYRML 210 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~------~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~~ 210 (305)
..++|+++|+|+-.|.|.+|..++..+++++.||++-..+ +....+...+++ ..|++.+-.+..... .
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~----~ 119 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG----A 119 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC----C
Confidence 3689999999999999999999999999999999983322 111122222222 146665554444332 1
Q ss_pred CCcEeEEEE--------eCC-ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh----hH-HHHHHHHHHCCCc
Q 021911 211 VGMVDVIFS--------DVA-QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA----VF-QSEVKKLQQDQFK 276 (305)
Q Consensus 211 ~~~fD~V~~--------d~~-~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~----v~-~~~~~~l~~~Gf~ 276 (305)
++..|+++. +-. ++.....+...+++.|||||.+++......-.+...... +- +..+...+..||+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 234444443 111 455666666689999999999998763211111111100 00 1114555678999
Q ss_pred EeEEeec
Q 021911 277 PFEQVTL 283 (305)
Q Consensus 277 ~~e~~~l 283 (305)
+.-.-++
T Consensus 200 l~aeS~i 206 (238)
T COG4798 200 LEAESEI 206 (238)
T ss_pred eeeeehh
Confidence 8765444
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2.7e-06 Score=76.15 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.+++.|||||+|.|.+|..|++.. ..|+|||++++.+..+.+......|++.++.|+...+.... ..++.|++
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l--~~~~~vVa 101 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL--AQPYKVVA 101 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh--cCCCEEEE
Confidence 57778999999999999999999984 37999999996655555555444799999999987753211 17899999
Q ss_pred eCCChhHHHHHH
Q 021911 220 DVAQPDQARILA 231 (305)
Q Consensus 220 d~~~~~~~~~l~ 231 (305)
|.|...-..++.
T Consensus 102 NlPY~Isspii~ 113 (259)
T COG0030 102 NLPYNISSPILF 113 (259)
T ss_pred cCCCcccHHHHH
Confidence 999555555554
No 219
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.39 E-value=1.5e-06 Score=75.14 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=60.4
Q ss_pred CCCEEEEEecCCCccH----HHHHhhh----CCCcEEEEEeCChHHHHHHHHHHHcC-----------------------
Q 021911 143 PGARVLYLGAASGTTV----SHVSDIV----GPNGVVYAVEFSHRSGRDLVNMAKKR----------------------- 191 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t----~~la~~~----~~~~~V~avD~s~~~~~~l~~~a~~~----------------------- 191 (305)
+.-+|+-+||++|-=. ..+.+.. .-..+|+|+|+|+.++ +.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L----~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~ 106 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL----EKARAGIYPERSLRGLPPAYLRRYFTERD 106 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH----HHHHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH----HHHHhCCCCHHHHhhhHHHHHHHhccccC
Confidence 4579999999999733 3333311 1145999999999544 434210
Q ss_pred -----------CCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 -----------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 -----------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|.|.+.|+.+.++ ....||+|+|-.. .+.|.+++. ..++.|+|||+|++..
T Consensus 107 ~~~~~v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~CRNVlIYF~~~~~~~vl~-~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 107 GGGYRVKPELRKMVRFRRHNLLDPDP---PFGRFDLIFCRNVLIYFDPETQQRVLR-RLHRSLKPGGYLFLGH 175 (196)
T ss_dssp CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHH-HHGGGEEEEEEEEE-T
T ss_pred CCceeEChHHcCceEEEecccCCCCc---ccCCccEEEecCEEEEeCHHHHHHHHH-HHHHHcCCCCEEEEec
Confidence 468899999887222 2579999999444 456777777 9999999999999975
No 220
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.38 E-value=5e-06 Score=85.18 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=82.7
Q ss_pred CchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhC-----------------------------------
Q 021911 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG----------------------------------- 166 (305)
Q Consensus 122 ~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~----------------------------------- 166 (305)
.|.+..|++.++. +..+ .+++..++|.+||+|++.+..|.+..
T Consensus 171 Apl~etlAaa~l~-~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 171 APLKENLAAAILL-RSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCcHHHHHHHHH-HcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677889998875 2221 25678999999999999998886411
Q ss_pred ------CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEEEeCCC-------hhHHHH-
Q 021911 167 ------PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ-------PDQARI- 229 (305)
Q Consensus 167 ------~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~-------~~~~~~- 229 (305)
....++++|+++.+++.+..+++.. ..|.+++.|+.+..... ..++||+|++|+|. .+..++
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 1236999999997777766666654 35889999998764321 12479999999992 111122
Q ss_pred --HHHHHhccCCCCcEEEEEE
Q 021911 230 --LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 230 --l~~~a~~~LkpGG~lv~s~ 248 (305)
+. ...+.+.+|+.+++.+
T Consensus 328 ~~lg-~~lk~~~~g~~~~llt 347 (702)
T PRK11783 328 SQLG-RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHH-HHHHHhCCCCeEEEEe
Confidence 22 2233334787777765
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=8.7e-06 Score=71.09 Aligned_cols=141 Identities=20% Similarity=0.105 Sum_probs=91.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCc-EeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGM-VDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~-fD~V~~d 220 (305)
..+++|||+|.|--+..+| ++.|+.+|+-+|...+.+.-+....++- +|+++++..+.+.... .. ||+|++-
T Consensus 68 ~~~~~DIGSGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHH-HhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEee
Confidence 5899999999999999999 4457888999999876655554444443 7899999998877532 13 9999997
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCC--ceEEEEEEEc
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFER--DHACVVGGYR 298 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~--~~~~vv~~~~ 298 (305)
+..+.. .++. -+..+||++|.++..... .......+....+...++.......+.--.. ...+++-.++
T Consensus 143 Ava~L~-~l~e-~~~pllk~~g~~~~~k~~-------~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~ 213 (215)
T COG0357 143 AVASLN-VLLE-LCLPLLKVGGGFLAYKGL-------AGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKR 213 (215)
T ss_pred hccchH-HHHH-HHHHhcccCCcchhhhHH-------hhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEecc
Confidence 765532 2233 677999999987654310 0111222233444556777776655433222 3444544443
No 222
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.38 E-value=5.4e-07 Score=78.15 Aligned_cols=116 Identities=29% Similarity=0.315 Sum_probs=80.3
Q ss_pred hhhHHHHHHHccccccCCCCC-CEEEEEecCCCccHHHHHhhhCC----Cc----EEEEEeCChHHHHHHHHHHHcCCCe
Q 021911 124 FRSKLAAAVLGGVDNIWIKPG-ARVLYLGAASGTTVSHVSDIVGP----NG----VVYAVEFSHRSGRDLVNMAKKRTNV 194 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~~~~~g-~~VLDlG~G~G~~t~~la~~~~~----~~----~V~avD~s~~~~~~l~~~a~~~~nI 194 (305)
+++.-+-.+|..=+.+++-.+ .+|+|||+++|.|+..|++.+-. .. .|++||+.+ |+- -+.|
T Consensus 21 wRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~--------MaP-I~GV 91 (294)
T KOG1099|consen 21 WRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP--------MAP-IEGV 91 (294)
T ss_pred chHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc--------CCc-cCce
Confidence 356666666653333344333 68999999999999999987633 21 399999987 332 2578
Q ss_pred EEEEccCCCCcccc-----cCCCcEeEEEEeCC----------ChhHHHHHHH---HHhccCCCCcEEEEEE
Q 021911 195 IPIIEDARHPAKYR-----MLVGMVDVIFSDVA----------QPDQARILAL---NASYFLKAGGHFVISI 248 (305)
Q Consensus 195 ~~~~~D~~~~~~~~-----~~~~~fD~V~~d~~----------~~~~~~~l~~---~a~~~LkpGG~lv~s~ 248 (305)
.-++.|+++..... +-..+.|+|+||-+ ...|.++|.. -+..+|||||.|+--+
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 88999999876432 12358999999877 1246666551 2557899999998754
No 223
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.34 E-value=2e-06 Score=79.27 Aligned_cols=104 Identities=21% Similarity=0.187 Sum_probs=69.6
Q ss_pred ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcE
Q 021911 138 NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
+-++-.+..|||+|||+|.+++..|+. ...+|+|||.|.-+ ....+.+..+ ..|++++..+.+.. . +.+++
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-L--P~eKV 128 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-L--PVEKV 128 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-c--Cccce
Confidence 335567899999999999999998887 46799999999633 2333333333 34777777776652 1 25899
Q ss_pred eEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVA-----QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|++.-. .......+.-.=-++|+|||.++=+
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 99999665 1122222221334789999987543
No 224
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.32 E-value=7.1e-06 Score=76.04 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHH-cC-CCeE--EEEccCCCCccc---cc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAK-KR-TNVI--PIIEDARHPAKY---RM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~-~~-~nI~--~~~~D~~~~~~~---~~ 209 (305)
.+.++..|+|+|||++.++..|.+.+.. ..+.++||+|..+++..++.+. .. ++|. .+++|..+.... ..
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 3456789999999999999999987742 3578999999988887777776 33 5554 588888664321 01
Q ss_pred CCCcEeEEEE------eCCChhHHHHHHHHHhc-cCCCCcEEEEEE
Q 021911 210 LVGMVDVIFS------DVAQPDQARILALNASY-FLKAGGHFVISI 248 (305)
Q Consensus 210 ~~~~fD~V~~------d~~~~~~~~~l~~~a~~-~LkpGG~lv~s~ 248 (305)
......+|+. |+..++....|. ++++ .|+|++.|++..
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~-~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLA-GFLATALSPSDSFLIGL 197 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHH-HHHHhhCCCCCEEEEec
Confidence 1233456553 223344445554 8888 999999999976
No 225
>PRK04148 hypothetical protein; Provisional
Probab=98.32 E-value=8e-06 Score=65.99 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=65.4
Q ss_pred CCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+.+|||+|||+|. .+..|++. ...|+++|+++. .++.+++. .+.+++.|+.++... +...+|+|.+-
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~----aV~~a~~~-~~~~v~dDlf~p~~~--~y~~a~liysi 84 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEK----AVEKAKKL-GLNAFVDDLFNPNLE--IYKNAKLIYSI 84 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHH----HHHHHHHh-CCeEEECcCCCCCHH--HHhcCCEEEEe
Confidence 346899999999996 77777754 359999999994 45555543 578999999887643 34689999986
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-|.++....+. ++++-+.. -|++.+
T Consensus 85 rpp~el~~~~~-~la~~~~~--~~~i~~ 109 (134)
T PRK04148 85 RPPRDLQPFIL-ELAKKINV--PLIIKP 109 (134)
T ss_pred CCCHHHHHHHH-HHHHHcCC--CEEEEc
Confidence 66665554454 44444444 355554
No 226
>PRK00536 speE spermidine synthase; Provisional
Probab=98.30 E-value=2.1e-05 Score=70.95 Aligned_cols=135 Identities=11% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----------CCCeEEEEccCCCCccccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----------RTNVIPIIEDARHPAKYRM 209 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----------~~nI~~~~~D~~~~~~~~~ 209 (305)
++.| .+||-+|.|.|..+..++++ +. +|+-||+++ ++++.+++ .++++++.. +. . .
T Consensus 70 h~~p-k~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~----~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~---~--~ 135 (262)
T PRK00536 70 KKEL-KEVLIVDGFDLELAHQLFKY--DT-HVDFVQADE----KILDSFISFFPHFHEVKNNKNFTHAKQ-LL---D--L 135 (262)
T ss_pred CCCC-CeEEEEcCCchHHHHHHHCc--CC-eeEEEECCH----HHHHHHHHHCHHHHHhhcCCCEEEeeh-hh---h--c
Confidence 4444 89999999999999999998 44 999999999 44444444 266776651 11 1 0
Q ss_pred CCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe--ecCCCC
Q 021911 210 LVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV--TLEPFE 287 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~--~l~p~~ 287 (305)
..++||+||+|...+ .+.+. .+++.|+|+|.|+... .+... ....+....+.+++ .|...... .+.+|
T Consensus 136 ~~~~fDVIIvDs~~~--~~fy~-~~~~~L~~~Gi~v~Qs--~sp~~---~~~~~~~i~~~l~~-~F~~v~~y~~~vp~~- 205 (262)
T PRK00536 136 DIKKYDLIICLQEPD--IHKID-GLKRMLKEDGVFISVA--KHPLL---EHVSMQNALKNMGD-FFSIAMPFVAPLRIL- 205 (262)
T ss_pred cCCcCCEEEEcCCCC--hHHHH-HHHHhcCCCcEEEECC--CCccc---CHHHHHHHHHHHHh-hCCceEEEEecCCCc-
Confidence 136899999995422 33344 7789999999999865 22111 13345555667766 58855433 33344
Q ss_pred CceEEEEEEEc
Q 021911 288 RDHACVVGGYR 298 (305)
Q Consensus 288 ~~~~~vv~~~~ 298 (305)
..+.+++|.+.
T Consensus 206 g~wgf~~aS~~ 216 (262)
T PRK00536 206 SNKGYIYASFK 216 (262)
T ss_pred chhhhheecCC
Confidence 55666777654
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.29 E-value=1.2e-05 Score=72.73 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=77.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~ 206 (305)
.++..+++.+ .+.++..|||+|+|+|.+|..|++.. .+|++||+++.....+.+.....+|++++..|+..++.
T Consensus 17 ~~~~~Iv~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 17 NIADKIVDAL---DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHH---TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHhc---CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 4455554333 56689999999999999999999985 58999999996655555554445899999999998876
Q ss_pred cccCCCcEeEEEEeCCChhHHHHHHHHHhc
Q 021911 207 YRMLVGMVDVIFSDVAQPDQARILALNASY 236 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~ 236 (305)
+.........|+++.|...-..++. ++..
T Consensus 91 ~~~~~~~~~~vv~NlPy~is~~il~-~ll~ 119 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPYNISSPILR-KLLE 119 (262)
T ss_dssp GGHCSSSEEEEEEEETGTGHHHHHH-HHHH
T ss_pred HHhhcCCceEEEEEecccchHHHHH-HHhh
Confidence 6434567889999999766666666 5444
No 228
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.28 E-value=2.2e-06 Score=71.73 Aligned_cols=69 Identities=20% Similarity=0.141 Sum_probs=53.5
Q ss_pred EEEeCChHHHHHHHHHHHcC---------CCeEEEEccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCC
Q 021911 172 YAVEFSHRSGRDLVNMAKKR---------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLK 239 (305)
Q Consensus 172 ~avD~s~~~~~~l~~~a~~~---------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~Lk 239 (305)
+++|+|+ +|++.++++ .+|++++.|+.+.+. ..++||+|++... .++..+.+. +++++||
T Consensus 1 ~GvD~S~----~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~v~~~~~l~~~~d~~~~l~-ei~rvLk 72 (160)
T PLN02232 1 MGLDFSS----EQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF---DDCEFDAVTMGYGLRNVVDRLRAMK-EMYRVLK 72 (160)
T ss_pred CeEcCCH----HHHHHHHHhhhcccccCCCceEEEEechhhCCC---CCCCeeEEEecchhhcCCCHHHHHH-HHHHHcC
Confidence 4799999 555555322 369999999987652 3568999998664 457788887 9999999
Q ss_pred CCcEEEEEE
Q 021911 240 AGGHFVISI 248 (305)
Q Consensus 240 pGG~lv~s~ 248 (305)
|||+|++..
T Consensus 73 pGG~l~i~d 81 (160)
T PLN02232 73 PGSRVSILD 81 (160)
T ss_pred cCeEEEEEE
Confidence 999999875
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.28 E-value=3.2e-06 Score=73.57 Aligned_cols=108 Identities=24% Similarity=0.205 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHH---HHHHc--------CCCeEEEEccCCCCccc
Q 021911 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV---NMAKK--------RTNVIPIIEDARHPAKY 207 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~---~~a~~--------~~nI~~~~~D~~~~~~~ 207 (305)
+.+.+++..+|||||.|..+.++|...+ -..+++||+.+....... +..++ ...+.++..|+.+.+..
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3688999999999999999999997753 335999999975433222 11111 14678888998876532
Q ss_pred ccCCCcEeEEEEeCCC--hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 208 RMLVGMVDVIFSDVAQ--PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 208 ~~~~~~fD~V~~d~~~--~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.......|+|++|..+ ++....|. .....||+|-++ ++++
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L~-~~~~~lk~G~~I-Is~~ 158 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLALA-ELLLELKPGARI-ISTK 158 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHHH-HHHTTS-TT-EE-EESS
T ss_pred hhhhcCCCEEEEeccccCHHHHHHHH-HHHhcCCCCCEE-EECC
Confidence 2223568999998774 44445555 666788888665 4553
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.27 E-value=1.7e-06 Score=72.95 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=71.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
+.+.|||+|+|.++...|+.. -+|+|+|.+|...+-+-++.+-. .|++.+..|+.+.. ....|+|+|.+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-----fe~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-----FENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-----ccccceeHHHHh
Confidence 789999999999998888773 38999999995544333333222 68999999998875 357899999776
Q ss_pred -----ChhHHHHHHHHHhccCCCCcEEEE
Q 021911 223 -----QPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 223 -----~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
...|...+. .+..||+..+.++=
T Consensus 106 DTaLi~E~qVpV~n-~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVIN-AVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHH-HHHHHhhcCCcccc
Confidence 345777776 77889999988764
No 231
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.26 E-value=7.4e-06 Score=71.19 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=80.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-CCC-eEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTN-VIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~~n-I~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.-.++||.|||-|..|.++...+ --+|..||.+++.+..+.+.... ... ..+.+.-+.++.+. ..+||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~---~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE---EGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC---CCcEeEEEeh
Confidence 35799999999999999876543 23899999999555555444333 223 45566666555432 4699999986
Q ss_pred CC-----ChhHHHHHHHHHhccCCCCcEEEEEEcccc-----cCCCCchhhhH-HHHHHHHHHCCCcEeEEeecCCCCCc
Q 021911 221 VA-----QPDQARILALNASYFLKAGGHFVISIKANC-----IDSTVPAEAVF-QSEVKKLQQDQFKPFEQVTLEPFERD 289 (305)
Q Consensus 221 ~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~-----i~~~~~~~~v~-~~~~~~l~~~Gf~~~e~~~l~p~~~~ 289 (305)
-. ..+..+.|. ++...|+|+|.+++-...+. ++.....-..- ....+.++++|++++....-.-|++.
T Consensus 130 W~lghLTD~dlv~fL~-RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~ 208 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLK-RCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKE 208 (218)
T ss_dssp S-GGGS-HHHHHHHHH-HHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TT
T ss_pred HhhccCCHHHHHHHHH-HHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 55 334556665 99999999999998652111 11111111111 22245558899999987655555443
No 232
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.25 E-value=9.7e-06 Score=73.24 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCEEEEEecCCCc----cHHHHHhhhC----CCcEEEEEeCChHHHHHHHH------HH--------HcC----------
Q 021911 144 GARVLYLGAASGT----TVSHVSDIVG----PNGVVYAVEFSHRSGRDLVN------MA--------KKR---------- 191 (305)
Q Consensus 144 g~~VLDlG~G~G~----~t~~la~~~~----~~~~V~avD~s~~~~~~l~~------~a--------~~~---------- 191 (305)
.-+|+-++|++|- .+..+++.+. ...+|+|+|+|...+..+.. .. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5799999999997 3334444442 25799999999855433210 00 000
Q ss_pred -------CCeEEEEccCCCCcccccCCCcEeEEEE-eCC----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 -------TNVIPIIEDARHPAKYRMLVGMVDVIFS-DVA----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 -------~nI~~~~~D~~~~~~~~~~~~~fD~V~~-d~~----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|.|...|+.+... ....||+|+| |+. .+.|.+++. ..+..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~-~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILR-RFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHH-HHHHHhCCCCEEEEcc
Confidence 346677777766543 2578999999 444 678899998 9999999999999964
No 233
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.23 E-value=9.8e-07 Score=68.33 Aligned_cols=98 Identities=26% Similarity=0.283 Sum_probs=43.8
Q ss_pred EEEecCCCccHHHHHhhhCCCc--EEEEEeCChH--HHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 148 LYLGAASGTTVSHVSDIVGPNG--VVYAVEFSHR--SGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 148 LDlG~G~G~~t~~la~~~~~~~--~V~avD~s~~--~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
||+|+..|..+..+++.+.+.. ++++||..+. ...+.++......+++++..|..+..+. ....++|+|+.|..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~-~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPS-LPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHH-HHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHH-cCCCCEEEEEECCCC
Confidence 6899999999999998876554 7999999983 2233333333346899999998654322 124799999999985
Q ss_pred --hhHHHHHHHHHhccCCCCcEEEEE
Q 021911 224 --PDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 224 --~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+.....+. .+.+.|+|+|.+++-
T Consensus 80 ~~~~~~~dl~-~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 SYEAVLRDLE-NALPRLAPGGVIVFD 104 (106)
T ss_dssp -HHHHHHHHH-HHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHH-HHHHHcCCCeEEEEe
Confidence 44555666 899999999988874
No 234
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.20 E-value=1.1e-05 Score=80.11 Aligned_cols=80 Identities=5% Similarity=0.071 Sum_probs=52.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-------CcEEEEEeCChHHHHHHHHHHHcCC--CeEEEEccCCCCccc--ccCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-------NGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKY--RMLV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-------~~~V~avD~s~~~~~~l~~~a~~~~--nI~~~~~D~~~~~~~--~~~~ 211 (305)
...+|||.|||+|.+...+++.+.. ...++++|+++.++..+...+.... .+..++.|....... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999987631 2578999999966555444433322 344455554322111 0113
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
+.||+|++|||
T Consensus 111 ~~fD~IIgNPP 121 (524)
T TIGR02987 111 DLFDIVITNPP 121 (524)
T ss_pred CcccEEEeCCC
Confidence 58999999999
No 235
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=98.14 E-value=4.4e-06 Score=81.55 Aligned_cols=114 Identities=26% Similarity=0.276 Sum_probs=78.8
Q ss_pred hhhHHHHHHHcccccc-CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC
Q 021911 124 FRSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR 202 (305)
Q Consensus 124 ~~s~l~a~ll~~l~~~-~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~ 202 (305)
|+|..+..|+++-.++ .+.+...||||||+||.+....++.++..+.|++||+-| .+--+|+..++.|++
T Consensus 24 yrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p---------ikp~~~c~t~v~dIt 94 (780)
T KOG1098|consen 24 YRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP---------IKPIPNCDTLVEDIT 94 (780)
T ss_pred hhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee---------cccCCccchhhhhhh
Confidence 4666666666532222 577889999999999999999999998788899999987 233367777778876
Q ss_pred CCccc-----ccCCCcEeEEEEeCCCh----------hHHH----HHHHHHhccCCCCcEEEEE
Q 021911 203 HPAKY-----RMLVGMVDVIFSDVAQP----------DQAR----ILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 203 ~~~~~-----~~~~~~fD~V~~d~~~~----------~~~~----~l~~~a~~~LkpGG~lv~s 247 (305)
....- -+.....|+|+.|.+.. .|.. .+. -|..+|..+|.|+--
T Consensus 95 td~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~-LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 95 TDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALK-LATEFLAKGGTFVTK 157 (780)
T ss_pred HHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHH-HHHHHHHhcCccccc
Confidence 54211 01234679999988721 2222 232 367889999995543
No 236
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.09 E-value=8.4e-05 Score=65.59 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=71.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+.+||=+| -.-+++..+...+...+|+.+|++++.+..+.+.|++. -+|+.++.|++++.+. .+.++||++++|+
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~-~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPE-ELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---T-TTSS-BSEEEE--
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCH-HHhcCCCEEEeCC
Confidence 478898777 44444444444455679999999997766666666654 4599999999987654 2458999999999
Q ss_pred CC-hhHHHHHHHHHhccCCCCc-EEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-ecCCCCC
Q 021911 222 AQ-PDQARILALNASYFLKAGG-HFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-TLEPFER 288 (305)
Q Consensus 222 ~~-~~~~~~l~~~a~~~LkpGG-~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~l~p~~~ 288 (305)
|. ++-..++...+...||.-| ..+++. . +.+ .......+..+.+.+.||-+.+++ .++.|+.
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~---~-~~~-~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~g 185 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGF---T-HKE-ASPDKWLEVQRFLLEMGLVITDIIPDFNRYEG 185 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT---HHHHHHHHHHHHTS--EEEEEEEEEEEB--
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEE---e-cCc-CcHHHHHHHHHHHHHCCcCHHHHHhhhccccc
Confidence 94 4555666667888999766 445544 1 111 111111222334468899998876 4555654
No 237
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.07 E-value=0.00016 Score=65.84 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=90.7
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
+||||+||.|.++.-+.+. + --.|+++|+++.+ ++..+.+ ++. +++.|+.+..... ....+|+|+..+||.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a----~~~~~~N~~~~-~~~~Di~~~~~~~-~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSA----AETYEANFPNK-LIEGDITKIDEKD-FIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHH----HHHHHHhCCCC-CccCccccCchhh-cCCCCCEEEeCCCCh
Confidence 6999999999998888765 3 3468999999944 4444433 333 5678887765432 135799999999953
Q ss_pred ------------hHHH-HHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeec-----C
Q 021911 225 ------------DQAR-ILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTL-----E 284 (305)
Q Consensus 225 ------------~~~~-~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l-----~ 284 (305)
+... ++. ..+.+.++|. ++++.-. .-+. ..+....+...++.|++.||.+...+-- -
T Consensus 74 ~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV-~g~~-~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~Gv 150 (275)
T cd00315 74 PFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENV-KGLL-THDNGNTLKVILNTLEELGYNVYWKLLNASDYGV 150 (275)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcC-cchh-ccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCC
Confidence 1111 221 0344556786 4444321 1111 1122345666778889999998765422 4
Q ss_pred CCCCceEEEEEEEcC
Q 021911 285 PFERDHACVVGGYRM 299 (305)
Q Consensus 285 p~~~~~~~vv~~~~~ 299 (305)
|..|..++++|.++.
T Consensus 151 PQ~R~R~~~ia~~~~ 165 (275)
T cd00315 151 PQNRERVFIIGIRKD 165 (275)
T ss_pred CCCCcEEEEEEEeCC
Confidence 778999999998754
No 238
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.05 E-value=1.7e-05 Score=70.71 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=62.3
Q ss_pred ccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcE
Q 021911 138 NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 138 ~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
...+++.+.|||+|.|||.+|..|.+.- .+|+|+|++++++.++.+..+-- ...+++++|+...+ ...|
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-----~P~f 124 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-----LPRF 124 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-----Cccc
Confidence 3368999999999999999999999883 48999999996666665555433 36889999997764 3579
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|.+++|.|
T Consensus 125 d~cVsNlP 132 (315)
T KOG0820|consen 125 DGCVSNLP 132 (315)
T ss_pred ceeeccCC
Confidence 99999888
No 239
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.03 E-value=6e-05 Score=69.32 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=66.0
Q ss_pred HHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcc
Q 021911 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAK 206 (305)
Q Consensus 128 l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~ 206 (305)
|...+++.| .++++..++|.=+|.|..+..+++.+. .++|+|+|.++.++....+..+.. .++++++.++.+...
T Consensus 8 ll~Evl~~L---~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGL---NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhc---CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence 444444433 477889999999999999999999875 489999999995554444333332 479999999877654
Q ss_pred cc--cCCCcEeEEEEeCC
Q 021911 207 YR--MLVGMVDVIFSDVA 222 (305)
Q Consensus 207 ~~--~~~~~fD~V~~d~~ 222 (305)
+. ....+||.|++|.-
T Consensus 84 ~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 84 HLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHhcCCCcccEEEEecc
Confidence 31 12357999998764
No 240
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.00 E-value=1.9e-05 Score=72.10 Aligned_cols=102 Identities=20% Similarity=0.129 Sum_probs=68.3
Q ss_pred CCEEEEEecCCCccH----HHHHhhhC---CCcEEEEEeCChHHHHHHHHHH------------------H---------
Q 021911 144 GARVLYLGAASGTTV----SHVSDIVG---PNGVVYAVEFSHRSGRDLVNMA------------------K--------- 189 (305)
Q Consensus 144 g~~VLDlG~G~G~~t----~~la~~~~---~~~~V~avD~s~~~~~~l~~~a------------------~--------- 189 (305)
.-+|+-+||++|-=. ..+.+..+ ...+|+|+|+|+.+++.+.+-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 379999999999733 33333321 1458999999996654432210 0
Q ss_pred ------cCCCeEEEEccCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 190 ------KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 190 ------~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-+..|.|.+.|+.+.+.. ....||+|+|... .+.+.+++. ++++.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliyF~~~~~~~vl~-~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIYFDKTTQERILR-RFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhcCCHHHHHHHHH-HHHHHhCCCcEEEEeC
Confidence 003567778887663211 2468999999333 456778887 9999999999998875
No 241
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.99 E-value=0.00018 Score=62.67 Aligned_cols=139 Identities=16% Similarity=0.071 Sum_probs=91.2
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE-EeCC
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF-SDVA 222 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~-~d~~ 222 (305)
|.|+||=.|.+...|.+. +....|+|+|+++..++.+.+..++. ..|++...|-....+. .+.+|+|+ +-|-
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~---~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP---GEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G---GG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC---CCCCCEEEEecCC
Confidence 689999999999999987 33447999999997777777776665 5799999996554321 12367665 5666
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEEcCCC
Q 021911 223 QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPK 301 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~~~~~ 301 (305)
-..-.++|. +....++.--.|++.-. ... .....+|.++||.+.+..-+..-.+-|-++++.+...+
T Consensus 77 G~lI~~ILe-~~~~~~~~~~~lILqP~-------~~~----~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~ 143 (205)
T PF04816_consen 77 GELIIEILE-AGPEKLSSAKRLILQPN-------THA----YELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEK 143 (205)
T ss_dssp HHHHHHHHH-HTGGGGTT--EEEEEES-------S-H----HHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS-
T ss_pred HHHHHHHHH-hhHHHhccCCeEEEeCC-------CCh----HHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCC
Confidence 667778887 77777777667877641 111 23367889999999876666555455666666665543
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.84 E-value=0.00038 Score=63.12 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCEEEEEecCCCccH-HHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc----CCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 144 GARVLYLGAASGTTV-SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 144 g~~VLDlG~G~G~~t-~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~----~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
..+|+=||||+=-+| +.+++.......|+.+|+++.+.....+..+. ...+.+++.|+.+.... ...||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEEE
Confidence 359999999976555 45555545566899999999776555454442 26799999998765421 35899999
Q ss_pred EeCCCh----hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEE
Q 021911 219 SDVAQP----DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 294 (305)
Q Consensus 219 ~d~~~~----~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv 294 (305)
...... +..+++. ++.+.++||..+++-.. .- ....+...++.-.-.||++...++-.+- --+.+|+
T Consensus 198 lAalVg~~~e~K~~Il~-~l~~~m~~ga~l~~Rsa-~G------lR~~LYp~vd~~~l~gf~~~~~~hP~~~-ViNSvv~ 268 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILE-HLAKHMAPGARLVVRSA-HG------LRSFLYPVVDPEDLRGFEVLAVVHPTDE-VINSVVF 268 (276)
T ss_dssp E-TT-S----SHHHHHH-HHHHHS-TTSEEEEEE---G------GGGGSS----TGGGTTEEEEEEE---TT----EEEE
T ss_pred EhhhcccccchHHHHHH-HHHhhCCCCcEEEEecc-hh------hHHHcCCCCChHHCCCeEEEEEECCCCC-ceeEEEE
Confidence 866644 7788888 99999999999888641 11 0111111111111138888766543322 3456666
Q ss_pred EEEc
Q 021911 295 GGYR 298 (305)
Q Consensus 295 ~~~~ 298 (305)
++|.
T Consensus 269 ~rk~ 272 (276)
T PF03059_consen 269 ARKK 272 (276)
T ss_dssp E---
T ss_pred EEec
Confidence 6664
No 243
>PRK10742 putative methyltransferase; Provisional
Probab=97.81 E-value=0.00012 Score=65.24 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=59.5
Q ss_pred CCCCCC--EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-----------CCCeEEEEccCCCCcc
Q 021911 140 WIKPGA--RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----------RTNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g~--~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-----------~~nI~~~~~D~~~~~~ 206 (305)
.++++. +|||+.||+|..+..+|.+ .++|+.||-++....-+.+.++. ..+|++++.|+.....
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 567777 9999999999999999988 35799999998554333222222 0368888888866543
Q ss_pred cccCCCcEeEEEEeCCChh
Q 021911 207 YRMLVGMVDVIFSDVAQPD 225 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~ 225 (305)
. ...+||+|++|++.|.
T Consensus 160 ~--~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 160 D--ITPRPQVVYLDPMFPH 176 (250)
T ss_pred h--CCCCCcEEEECCCCCC
Confidence 2 2357999999999553
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.79 E-value=0.00021 Score=58.16 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=68.1
Q ss_pred EEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCC-cEeEEEEeCC-----------Chh-HHHHHHHH
Q 021911 170 VVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVG-MVDVIFSDVA-----------QPD-QARILALN 233 (305)
Q Consensus 170 ~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~-~fD~V~~d~~-----------~~~-~~~~l~~~ 233 (305)
+|||+|+.+.+++...+..++. .+|.+++.+-.....+ ... ++|+|+.|.- .++ -...+. .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~-~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE-A 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH-H
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH-H
Confidence 5999999998777776666655 5799998877766654 234 8999998765 233 334555 8
Q ss_pred HhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCC
Q 021911 234 ASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPF 286 (305)
Q Consensus 234 a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~ 286 (305)
+.++|+|||.+++....-.... ..+...+.+.+..|....|.+.....++--
T Consensus 78 al~lL~~gG~i~iv~Y~GH~gG-~eE~~av~~~~~~L~~~~~~V~~~~~~N~~ 129 (140)
T PF06962_consen 78 ALELLKPGGIITIVVYPGHPGG-KEESEAVEEFLASLDQKEFNVLKYQFINQK 129 (140)
T ss_dssp HHHHEEEEEEEEEEE--STCHH-HHHHHHHHHHHHTS-TTTEEEEEEEESS-S
T ss_pred HHHhhccCCEEEEEEeCCCCCC-HHHHHHHHHHHHhCCcceEEEEEEEccCCC
Confidence 8999999999999873211000 112223334445555556777766555443
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.77 E-value=2.6e-05 Score=75.12 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=60.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHH-HHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC-
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG-RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA- 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~-~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~- 222 (305)
..+||+|||.|+++.+|.++ .|+.+-+.+.-. ...++.|.++. |-.+..-+ ......+....||+|.|.-.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~-~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG-VPAMIGVL-GSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC-cchhhhhh-ccccccCCccchhhhhccccc
Confidence 47999999999999999987 455554443111 13455666552 32222221 11112234689999987433
Q ss_pred ---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 223 ---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 223 ---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.++.. ++..++-++|+|||+|++|.+
T Consensus 192 i~W~~~~g-~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 192 IPWHPNDG-FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccchhccc-ceeehhhhhhccCceEEecCC
Confidence 23333 344489999999999999974
No 246
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.73 E-value=0.00057 Score=61.82 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=88.3
Q ss_pred hhHHHHHHHccccccCC-----CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHH---HHHHHcC-----
Q 021911 125 RSKLAAAVLGGVDNIWI-----KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKR----- 191 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~-----~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l---~~~a~~~----- 191 (305)
+......|+..|+...+ +...+||--|||-|.++..+|.. ...|.+.|+|-.++... ++...+.
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I 109 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTI 109 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEE
Confidence 33444555555554433 33579999999999999999988 34899999997553221 1211110
Q ss_pred ----------------------------------CCeEEEEccCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHH
Q 021911 192 ----------------------------------TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNA 234 (305)
Q Consensus 192 ----------------------------------~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a 234 (305)
.++....+|+.+.........+||+|+...- .++-.+-+. .+
T Consensus 110 ~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~-tI 188 (270)
T PF07942_consen 110 YPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIE-TI 188 (270)
T ss_pred ecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHH-HH
Confidence 1234444555444322111368999987544 455666666 88
Q ss_pred hccCCCCcEEEEEEcc--cccCC---CCchhhhHHHHHHHH-HHCCCcEeEEe
Q 021911 235 SYFLKAGGHFVISIKA--NCIDS---TVPAEAVFQSEVKKL-QQDQFKPFEQV 281 (305)
Q Consensus 235 ~~~LkpGG~lv~s~~~--~~i~~---~~~~~~v~~~~~~~l-~~~Gf~~~e~~ 281 (305)
.++|||||+.|=.=+. ...+. .+..-+.-.+|+..+ +..||++++..
T Consensus 189 ~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 189 EHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 8999999955433210 00011 011122334555444 67899987644
No 247
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.73 E-value=0.00029 Score=65.02 Aligned_cols=144 Identities=18% Similarity=0.119 Sum_probs=88.9
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP- 224 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~- 224 (305)
+++||+||.|.++.-+.+. .--.|.|+|+++. +.+..+.+-. .....|++......... .+|+|+..+||.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~----a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPD----ACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHH----HHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHH----HHHhhhhccc-ccccccccccccccccc-cceEEEeccCCce
Confidence 7999999999999988876 2336899999994 4444443322 88889998887543222 699999999853
Q ss_pred -----------h----HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-e---c-C
Q 021911 225 -----------D----QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-T---L-E 284 (305)
Q Consensus 225 -----------~----~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~---l-~ 284 (305)
+ ...-+. .+...++|. +|++.-. .-+.+. .....+...++.|++.||.+...+ + + -
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~Pk-~~~~ENV-~~l~~~-~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGv 149 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFL-RIVKELKPK-YFLLENV-PGLLSS-KNGEVFKEILEELEELGYNVQWRVLNAADYGV 149 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHH-HHHHHHS-S-EEEEEEE-GGGGTG-GGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTS
T ss_pred EeccccccccccccchhhHHHH-HHHhhccce-EEEeccc-ceeecc-ccccccccccccccccceeehhccccHhhCCC
Confidence 1 222222 455668896 4555421 112221 223456667788889999876544 2 2 5
Q ss_pred CCCCceEEEEEEEcCCC
Q 021911 285 PFERDHACVVGGYRMPK 301 (305)
Q Consensus 285 p~~~~~~~vv~~~~~~~ 301 (305)
|..|..+++||.++...
T Consensus 150 PQ~R~R~fivg~r~~~~ 166 (335)
T PF00145_consen 150 PQNRERVFIVGIRKDLP 166 (335)
T ss_dssp SBE-EEEEEEEEEGGG-
T ss_pred CCceeeEEEEEECCCCC
Confidence 67899999999987653
No 248
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.68 E-value=8.9e-05 Score=63.70 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..++||||+|.|-.+.+++..+. +|||.|+|. .|+...++. -||-.+. +..+. .-++|+|.|-..
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---evyATElS~----tMr~rL~kk~ynVl~~~-ew~~t------~~k~dli~clNl 178 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE---EVYATELSW----TMRDRLKKKNYNVLTEI-EWLQT------DVKLDLILCLNL 178 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH---HHHHHHhhH----HHHHHHhhcCCceeeeh-hhhhc------CceeehHHHHHH
Confidence 47999999999999999998875 699999999 677776654 2333222 22111 247899987333
Q ss_pred ---ChhHHHHHHHHHhccCCC-CcEEEEEE
Q 021911 223 ---QPDQARILALNASYFLKA-GGHFVISI 248 (305)
Q Consensus 223 ---~~~~~~~l~~~a~~~Lkp-GG~lv~s~ 248 (305)
|.+...++. .++.+|+| .|+++++.
T Consensus 179 LDRc~~p~kLL~-Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 179 LDRCFDPFKLLE-DIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHhhcChHHHHH-HHHHHhccCCCcEEEEE
Confidence 667777777 89999999 99888875
No 249
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.65 E-value=0.00075 Score=66.40 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=79.0
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCC---CcEEEEEeCChHHHHHHHHHHHcC------C-Ce
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKR------T-NV 194 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~---~~~V~avD~s~~~~~~l~~~a~~~------~-nI 194 (305)
.++|.+.++ .+.+..+|+|.+||+|.+....++.+.. ...+|+.|+++. ....++.+ . ++
T Consensus 174 v~~liv~~l------~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~----t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 174 VSELIVELL------DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDT----TYRLAKMNLILHGIEGDA 243 (489)
T ss_pred HHHHHHHHc------CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHH----HHHHHHHHHHHhCCCccc
Confidence 345555554 3567789999999999999999988753 367999999873 33333322 2 23
Q ss_pred EEEEccCCCCccc--ccCCCcEeEEEEeCCC---------------------------hhHHHHHHHHHhccCCCCcEEE
Q 021911 195 IPIIEDARHPAKY--RMLVGMVDVIFSDVAQ---------------------------PDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 195 ~~~~~D~~~~~~~--~~~~~~fD~V~~d~~~---------------------------~~~~~~l~~~a~~~LkpGG~lv 245 (305)
.....|....+.. ......||.|++++|. +.....+.+++...|+|+|+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 3444444333222 1234689999999991 0121344448999999998888
Q ss_pred EEEcccccCCCC
Q 021911 246 ISIKANCIDSTV 257 (305)
Q Consensus 246 ~s~~~~~i~~~~ 257 (305)
+.++...+....
T Consensus 324 ivl~~gvlfr~~ 335 (489)
T COG0286 324 IVLPDGVLFRGG 335 (489)
T ss_pred EEecCCcCcCCC
Confidence 887655544443
No 250
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.59 E-value=0.0014 Score=59.73 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=67.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEE--EccCC-CCcccccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI--IEDAR-HPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~--~~D~~-~~~~~~~~~~~fD~V~~d 220 (305)
..+|||+|||+|+.+..+.+.+....++++||.|+.+.+-....++...+.... ..+.. +.. .....|+|++.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL----PFPPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc----cCCCCcEEEEe
Confidence 369999999999988888888765568999999995543333333322221111 11111 111 11234999874
Q ss_pred CC-----ChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 221 VA-----QPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 221 ~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
.. .....+++. ++...+++ .|++..+. +..-.....+..+.|.+.++.+..
T Consensus 110 ~~L~EL~~~~r~~lv~-~LW~~~~~--~LVlVEpG-----t~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 110 YVLNELPSAARAELVR-SLWNKTAP--VLVLVEPG-----TPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhhcCCchHHHHHHH-HHHHhccC--cEEEEcCC-----ChHHHHHHHHHHHHHhhCCCceEC
Confidence 33 323333443 66666766 67666521 222223334444555555555543
No 251
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.54 E-value=0.00042 Score=60.03 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCccccc---C
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM---L 210 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~~~~~---~ 210 (305)
++| +.|+|+|...|..+..+|+++ +..++|++||++.+. ....+.+. ++|+++++|..++..... .
T Consensus 31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~---~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP---HNRKAIESHPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch---hchHHHhhccccCceEEEECCCCCHHHHHHHHHh
Confidence 455 899999999999999888654 567899999996421 11222232 789999999987753321 1
Q ss_pred --CCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 211 --VGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 --~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.....+|+.|.. .......|. ....+|++|+++++..
T Consensus 107 ~~~~~~vlVilDs~H~~~hvl~eL~-~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTHEHVLAELE-AYAPLVSPGSYLIVED 147 (206)
T ss_dssp ----SSEEEEESS----SSHHHHHH-HHHHT--TT-EEEETS
T ss_pred hccCCceEEEECCCccHHHHHHHHH-HhCccCCCCCEEEEEe
Confidence 134457888887 356677777 6889999999999864
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.53 E-value=0.00041 Score=63.88 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=54.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccc--c-CC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYR--M-LV 211 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~--~-~~ 211 (305)
.++++...||.=-|.|..+..+++.+.+ ++|+++|-++ ++++.++++ .++.+++.++.+...+. . ..
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~----~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDP----EALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-H----HHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTT
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCH----HHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCC
Confidence 5788899999999999999999998855 9999999999 666666654 68999999987765432 1 24
Q ss_pred CcEeEEEEeCC
Q 021911 212 GMVDVIFSDVA 222 (305)
Q Consensus 212 ~~fD~V~~d~~ 222 (305)
..+|.|++|.-
T Consensus 92 ~~~dgiL~DLG 102 (310)
T PF01795_consen 92 NKVDGILFDLG 102 (310)
T ss_dssp S-EEEEEEE-S
T ss_pred CccCEEEEccc
Confidence 58999999875
No 253
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00022 Score=62.26 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCe--EEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNV--IPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI--~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
....++||||+-|....||... .-.+++-+|.|. +|++.++.. +.| +..+.|-...+ +..++||+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~----~M~~s~~~~qdp~i~~~~~v~DEE~Ld---f~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSY----DMIKSCRDAQDPSIETSYFVGDEEFLD---FKENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecch----HHHHHhhccCCCceEEEEEecchhccc---ccccchhhhh
Confidence 3578999999999999999866 234789999999 788877765 333 34556655444 3468999999
Q ss_pred EeCCCh---hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQP---DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~---~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.+... +...-+. +++..|||+|.|+-+.
T Consensus 143 sSlslHW~NdLPg~m~-~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 143 SSLSLHWTNDLPGSMI-QCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhhhhhccCchHHH-HHHHhcCCCccchhHH
Confidence 988732 2334444 8899999999998875
No 254
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.0014 Score=59.62 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=68.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCc
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPA 205 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~ 205 (305)
-|...++..| .++|+...||.--|.|..+..+.+.+.+.++++++|-++.++....+..+.. .++.+++..+.+..
T Consensus 10 VLl~E~i~~L---~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 10 VLLNEVVELL---APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA 86 (314)
T ss_pred hHHHHHHHhc---ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH
Confidence 3444444433 5888999999999999999999999877889999999996555555544443 68999998876654
Q ss_pred ccc--cCCCcEeEEEEeCC
Q 021911 206 KYR--MLVGMVDVIFSDVA 222 (305)
Q Consensus 206 ~~~--~~~~~fD~V~~d~~ 222 (305)
... .....||-|+.|.-
T Consensus 87 ~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 87 EALKELGIGKVDGILLDLG 105 (314)
T ss_pred HHHHhcCCCceeEEEEecc
Confidence 331 12468999998664
No 255
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.52 E-value=0.001 Score=54.26 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=64.0
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcC-----CCeEEEEccCCCCcccccCCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVG 212 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~-----~nI~~~~~D~~~~~~~~~~~~ 212 (305)
..+...|+|+|||-|.++..|+..+ .+..+|++||.++...+.+.+.+++. .++.++..++..... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS----SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc----cC
Confidence 3667899999999999999999943 35679999999987666655555432 344555544433211 34
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccC
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 254 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~ 254 (305)
..++++.==+|-+....+...+.+ ++-.+++.. .||..
T Consensus 99 ~~~~~vgLHaCG~Ls~~~l~~~~~---~~~~~l~~v-pCCyh 136 (141)
T PF13679_consen 99 PPDILVGLHACGDLSDRALRLFIR---PNARFLVLV-PCCYH 136 (141)
T ss_pred CCeEEEEeecccchHHHHHHHHHH---cCCCEEEEc-CCccc
Confidence 566666533444433333313223 554554443 37743
No 256
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.47 E-value=0.00016 Score=62.76 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=55.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-------CCeEEEEccCCCCccc-ccCCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIEDARHPAKY-RMLVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-------~nI~~~~~D~~~~~~~-~~~~~~f 214 (305)
....|+|..||-|..+...|... ..|+++|++| .-+.+|+++ +.|.|+++|+.+.... ......+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDP----ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDP----VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccH----HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhhee
Confidence 34789999999999999999874 3799999999 445555544 6899999998665322 1223468
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+..+|
T Consensus 167 ~~vf~spp 174 (263)
T KOG2730|consen 167 DCVFLSPP 174 (263)
T ss_pred eeeecCCC
Confidence 89998887
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.33 E-value=0.0033 Score=56.63 Aligned_cols=103 Identities=22% Similarity=0.198 Sum_probs=62.6
Q ss_pred CEEEEEecCCC--ccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCC--eEEEEccCCCCcccc---------cCC
Q 021911 145 ARVLYLGAASG--TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN--VIPIIEDARHPAKYR---------MLV 211 (305)
Q Consensus 145 ~~VLDlG~G~G--~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~n--I~~~~~D~~~~~~~~---------~~~ 211 (305)
...||||||-- ..+.++|+.+.|.++|+-||++|-.+..........++ ..++++|++++.... .+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 68999999944 37888999989999999999999554444444444466 889999999875321 112
Q ss_pred CcEeEEEEeCC----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 212 GMVDVIFSDVA----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 212 ~~fD~V~~d~~----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+=++++.+. . .+...++. .....|.||.+|++|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~-~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVA-RLRDALAPGSYLAISH 190 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHH-HHHCCS-TT-EEEEEE
T ss_pred CCeeeeeeeeeccCCCccCHHHHHH-HHHHhCCCCceEEEEe
Confidence 34445554332 2 45667776 9999999999999998
No 258
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00082 Score=57.42 Aligned_cols=96 Identities=21% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEE-e
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS-D 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~-d 220 (305)
.+.+|||+|+|+|..+...+.. ....|++.|+.+.....+--+++.+ -+|.++..|... . +..||+|++ |
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~-----~~~~Dl~LagD 150 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S-----PPAFDLLLAGD 150 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-----CcceeEEEeec
Confidence 3799999999999888887776 4568999999974333322223333 467777778765 2 468999997 4
Q ss_pred CC-ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 221 VA-QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 221 ~~-~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+. .......+. .....|+..|.-++.
T Consensus 151 lfy~~~~a~~l~-~~~~~l~~~g~~vlv 177 (218)
T COG3897 151 LFYNHTEADRLI-PWKDRLAEAGAAVLV 177 (218)
T ss_pred eecCchHHHHHH-HHHHHHHhCCCEEEE
Confidence 43 222333333 355566665555553
No 259
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.29 E-value=0.0013 Score=57.03 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=57.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHH----------------------c---------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAK----------------------K--------- 190 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~----------------------~--------- 190 (305)
..-++.|-|||+|++...+.-..... ..|++-|+++.+++-..++.. +
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34699999999999988887653322 379999999855432211110 0
Q ss_pred --C-----------CCeEEEEccCCCCcccc--cCCCcEeEEEEeCCC-----------hhHH-HHHHHHHhccCCCCcE
Q 021911 191 --R-----------TNVIPIIEDARHPAKYR--MLVGMVDVIFSDVAQ-----------PDQA-RILALNASYFLKAGGH 243 (305)
Q Consensus 191 --~-----------~nI~~~~~D~~~~~~~~--~~~~~fD~V~~d~~~-----------~~~~-~~l~~~a~~~LkpGG~ 243 (305)
+ ......+.|++++.... ......|+|+.|.|. .+.. .+|. +++..|-+...
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~-~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN-SLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH-HHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH-HHHhhCCCCcE
Confidence 0 12457778998865421 122357999999991 1233 4454 89999976777
Q ss_pred EEEEEc
Q 021911 244 FVISIK 249 (305)
Q Consensus 244 lv~s~~ 249 (305)
++++.+
T Consensus 210 V~v~~k 215 (246)
T PF11599_consen 210 VAVSDK 215 (246)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 777653
No 260
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.26 E-value=0.0053 Score=48.11 Aligned_cols=99 Identities=22% Similarity=0.197 Sum_probs=62.3
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCC--eEEEEccCCCC-cccccCC-CcEeEEEEeCC
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN--VIPIIEDARHP-AKYRMLV-GMVDVIFSDVA 222 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~n--I~~~~~D~~~~-~~~~~~~-~~fD~V~~d~~ 222 (305)
+||++||+|..+ .++........++++|+++..+............ +.++..|.... .+. .. ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPF--EDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCC--CCCCceeEEeeeee
Confidence 999999999987 5555432223788999999554442222211111 57788887652 211 12 37999943333
Q ss_pred C--hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 223 Q--PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 223 ~--~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
. ......+. ++.+.|+|+|.+++...
T Consensus 129 ~~~~~~~~~~~-~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 129 LHLLPPAKALR-ELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hhcCCHHHHHH-HHHHhcCCCcEEEEEec
Confidence 1 12455565 88999999999999874
No 261
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.0045 Score=57.54 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=84.9
Q ss_pred EEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh-
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP- 224 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~- 224 (305)
||||.||.|.++.-+.+. + --.|.++|+++.+ .+..+.+ ++ .+++.|+.+..... ...+|+++..+||.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a----~~ty~~N~~~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYA----QKTYEANFGN-KVPFGDITKISPSD--IPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHH----HHHHHHhCCC-CCCccChhhhhhhh--CCCcCEEEecCCCcc
Confidence 689999999999888765 2 2257789999844 3333332 33 45667887765322 24689999988852
Q ss_pred -----------hHH-HHHH--HHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe-e---c-CC
Q 021911 225 -----------DQA-RILA--LNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-T---L-EP 285 (305)
Q Consensus 225 -----------~~~-~~l~--~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~-~---l-~p 285 (305)
+.. .++. ..+.+.++|. .+++.-... +.. ......+...+..|+..||.+...+ . + -|
T Consensus 72 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~-l~~-~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvP 148 (315)
T TIGR00675 72 FSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKG-LVS-HDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVP 148 (315)
T ss_pred cchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHH-HHh-cccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCC
Confidence 222 2222 1334456786 343332111 111 1112345666788888999876543 2 2 57
Q ss_pred CCCceEEEEEEE
Q 021911 286 FERDHACVVGGY 297 (305)
Q Consensus 286 ~~~~~~~vv~~~ 297 (305)
..|..++++|.+
T Consensus 149 Q~R~R~f~ia~r 160 (315)
T TIGR00675 149 QNRERIYIVGFR 160 (315)
T ss_pred CCccEEEEEEEe
Confidence 789999999987
No 262
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.25 E-value=0.00081 Score=54.49 Aligned_cols=57 Identities=23% Similarity=0.119 Sum_probs=45.8
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~ 203 (305)
.|||+||+.|.++..++... +..+|+++|.++.....+.+..+.+ +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999874 5669999999998877777776654 568877776644
No 263
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.17 E-value=0.00094 Score=61.59 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=78.9
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHH-------HHHHHHcC--
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD-------LVNMAKKR-- 191 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~-------l~~~a~~~-- 191 (305)
+++-.|-+.+.+. ..+||+.|+|-..|||.+....|.. + +.|++.||+-+.+++ ...+.++.
T Consensus 192 mDAeLSli~AN~A------mv~pGdivyDPFVGTGslLvsaa~F-G--a~viGtDIDyr~vragrg~~~si~aNFkQYg~ 262 (421)
T KOG2671|consen 192 MDAELSLIMANQA------MVKPGDIVYDPFVGTGSLLVSAAHF-G--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS 262 (421)
T ss_pred cchhHHHHHhhhh------ccCCCCEEecCccccCceeeehhhh-c--ceeeccccchheeecccCCCcchhHhHHHhCC
Confidence 3443444444443 5789999999999999998887765 3 589999998755441 11122222
Q ss_pred --CCeEEEEccCCCCcccccCCCcEeEEEEeCC---------------------------Ch--h-------HHHHHHHH
Q 021911 192 --TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA---------------------------QP--D-------QARILALN 233 (305)
Q Consensus 192 --~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~---------------------------~~--~-------~~~~l~~~ 233 (305)
.-+.+..+|.+.++... ...||+|+||+| +| . ...+|. -
T Consensus 263 ~~~fldvl~~D~sn~~~rs--n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~-f 339 (421)
T KOG2671|consen 263 SSQFLDVLTADFSNPPLRS--NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLC-F 339 (421)
T ss_pred cchhhheeeecccCcchhh--cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHH-h
Confidence 23567788988775432 458999999999 11 1 122333 5
Q ss_pred HhccCCCCcEEEEEEc
Q 021911 234 ASYFLKAGGHFVISIK 249 (305)
Q Consensus 234 a~~~LkpGG~lv~s~~ 249 (305)
+.+.|..||+|++-.+
T Consensus 340 ss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 340 SSRRLVDGGRLVFWLP 355 (421)
T ss_pred hHhhhhcCceEEEecC
Confidence 7789999999999764
No 264
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0023 Score=61.72 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCCCCC-EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH-HcCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 140 WIKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 140 ~~~~g~-~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a-~~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
.+++-. ++|-+|||.--++.++-+- ..-.|+.+|+|+..+..++... +.++-+.+...|+.... +.+++||+|
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~---fedESFdiV 118 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV---FEDESFDIV 118 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc---CCCcceeEE
Confidence 345555 9999999998888777765 2347999999998888887666 44477889999987765 336789988
Q ss_pred EE----eCC-----C---hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FS----DVA-----Q---PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~----d~~-----~---~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+. |.. . +........+++++|+++|+++..+
T Consensus 119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 86 222 1 1233333347999999999988877
No 265
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.08 E-value=0.022 Score=55.61 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc--------------c
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR--------------M 209 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~--------------~ 209 (305)
..+++||+||.|.+..-+-.. + --.|.++|+++.+.+....+....++...+..|++...... .
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhc
Confidence 569999999999999888654 3 23688999999554443333211134455667776653210 0
Q ss_pred CCCcEeEEEEeCCChh----------------------HHHHHHHH---HhccCCCCcEEEEEEcccccCCCCchhhhHH
Q 021911 210 LVGMVDVIFSDVAQPD----------------------QARILALN---ASYFLKAGGHFVISIKANCIDSTVPAEAVFQ 264 (305)
Q Consensus 210 ~~~~fD~V~~d~~~~~----------------------~~~~l~~~---a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~ 264 (305)
....+|+++..+||.. +..++. + +...++|. .|++.-. .-+.+. +....|.
T Consensus 166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~-~~~rii~~~kPk-~fvlENV-~gl~s~-~~g~~f~ 241 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFF-DVARIIDAKRPA-IFVLENV-KNLKSH-DKGKTFR 241 (467)
T ss_pred cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHH-HHHHHHHHhCCC-EEEEeCc-Hhhhcc-cccHHHH
Confidence 1236899999888531 111222 3 33346776 4444321 112111 2233566
Q ss_pred HHHHHHHHCCCcEeE-------------EeecCCCCCceEEEEEEEcC
Q 021911 265 SEVKKLQQDQFKPFE-------------QVTLEPFERDHACVVGGYRM 299 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e-------------~~~l~p~~~~~~~vv~~~~~ 299 (305)
..++.|++.||.+.+ ..++-|..|..+++||.++.
T Consensus 242 ~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~fVPQ~R~RvfiVg~r~~ 289 (467)
T PRK10458 242 IIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRD 289 (467)
T ss_pred HHHHHHHHcCCeEEeccccCcccceEeehhhCCCccCcEEEEEEEeCC
Confidence 667888889999753 11336889999999998754
No 266
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.06 E-value=0.024 Score=49.51 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=99.5
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
+.+..+.|+||=.+.+...+... ++...++++|+++..+...+++.++. +.|...+.|...... +.+.+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~---~~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE---LEDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC---ccCCcCEEE
Confidence 45566999999999999999987 35668999999997777777777766 456666667644332 234788775
Q ss_pred -EeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 219 -SDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 219 -~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
+-|--..-.+++. +....|+.==+|++.- + ..+ ....++|.+++|.+....-++.-.+=|-++++.+
T Consensus 91 IAGMGG~lI~~ILe-e~~~~l~~~~rlILQP--n-----~~~----~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~ 158 (226)
T COG2384 91 IAGMGGTLIREILE-EGKEKLKGVERLILQP--N-----IHT----YELREWLSANSYEIKAETILEEDGKIYEILVVEK 158 (226)
T ss_pred EeCCcHHHHHHHHH-HhhhhhcCcceEEECC--C-----CCH----HHHHHHHHhCCceeeeeeeecccCeEEEEEEEec
Confidence 5666777888888 7777777544566542 1 111 2235788899999887665666556677777766
Q ss_pred cCC
Q 021911 298 RMP 300 (305)
Q Consensus 298 ~~~ 300 (305)
..+
T Consensus 159 ~~~ 161 (226)
T COG2384 159 SSK 161 (226)
T ss_pred CCc
Confidence 653
No 267
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.02 E-value=0.0032 Score=58.39 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=70.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE----
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS---- 219 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~---- 219 (305)
-...+|+|.|.|..+.++...+ | .|-+++++...+........ +.|+.+-+|..... +.-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~------P~~daI~mkWiL 246 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT------PKGDAIWMKWIL 246 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc--CCcceecccccccC------CCcCeEEEEeec
Confidence 3789999999999999999965 3 58888888754333333332 56888888886542 35578886
Q ss_pred -eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 -DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 -d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|.+..+-..+|. +++..|+|+|.+++..
T Consensus 247 hdwtDedcvkiLk-nC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 247 HDWTDEDCVKILK-NCKKSLPPGGKIIVVE 275 (342)
T ss_pred ccCChHHHHHHHH-HHHHhCCCCCEEEEEe
Confidence 444567778888 9999999999999986
No 268
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0064 Score=52.80 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=76.2
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccC
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDA 201 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~ 201 (305)
|+...+++.+. ..+.+||.+|-|-|.....+.+. .| ..=+-+|..|...+.|.+..-. +.||.+...-.
T Consensus 89 piMha~A~ai~--------tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 89 PIMHALAEAIS--------TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred HHHHHHHHHHh--------hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccccccceEEEecch
Confidence 44545555443 57899999999999888888776 23 3456689999555555444322 26888776644
Q ss_pred CCCcccccCCCcEeEEEEeCCC---hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQ---PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~---~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+..+. .++..||-|+-|.-. .+...... ++.++|||+|.|-+.-
T Consensus 159 eDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hq-h~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 159 EDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQ-HVVRLLKPEGVFSYFN 206 (271)
T ss_pred Hhhhcc-ccccCcceeEeechhhHHHHHHHHHH-HHhhhcCCCceEEEec
Confidence 333221 235689999987763 34444444 8999999999988763
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.01 E-value=0.0035 Score=58.43 Aligned_cols=100 Identities=24% Similarity=0.313 Sum_probs=65.9
Q ss_pred cccccCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEc-cCCCCcccccCCC
Q 021911 135 GVDNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DARHPAKYRMLVG 212 (305)
Q Consensus 135 ~l~~~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~-D~~~~~~~~~~~~ 212 (305)
.|.....+|+++|+-+|+| -|..+..+|..++ .+|+++|.|+ +-++.+++----.++.. |...... ...
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~----~K~e~a~~lGAd~~i~~~~~~~~~~---~~~ 228 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSE----EKLELAKKLGADHVINSSDSDALEA---VKE 228 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCCh----HHHHHHHHhCCcEEEEcCCchhhHH---hHh
Confidence 3445578999999999887 4457778888765 7999999999 44455554322223322 2211111 123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.||+|+..++ +... . .+.+.|+++|++++.=
T Consensus 229 ~~d~ii~tv~-~~~~---~-~~l~~l~~~G~~v~vG 259 (339)
T COG1064 229 IADAIIDTVG-PATL---E-PSLKALRRGGTLVLVG 259 (339)
T ss_pred hCcEEEECCC-hhhH---H-HHHHHHhcCCEEEEEC
Confidence 4999998888 3333 2 5558999999999874
No 270
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.011 Score=55.18 Aligned_cols=144 Identities=19% Similarity=0.143 Sum_probs=89.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
..+++||+||.|.+..-+... + --.+.++|+++ ..++..+.+ +.-.++..|+............+|+|+.-+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~----~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDP----PAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-C-CeEEEEEecCH----HHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCC
Confidence 368999999999999777765 2 33688999999 444444443 3356677887766543211128999999999
Q ss_pred Chh------------HH----HHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE-Eee---
Q 021911 223 QPD------------QA----RILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE-QVT--- 282 (305)
Q Consensus 223 ~~~------------~~----~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e-~~~--- 282 (305)
|.+ .. --+. ++...++| -.|++.-. .-+.+. ....+....+.|++.||.+.. ++.
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P-~~fv~ENV-~gl~~~--~~~~~~~i~~~L~~~GY~~~~~ilna~d 151 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP-KFFVLENV-KGLLSS--KGQTFDEIKKELEELGYGVEFNILNAAD 151 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHH-HHHHhhCC-CEEEEecC-chHHhc--CchHHHHHHHHHHHcCCcchHheeeHHh
Confidence 642 11 1112 34456788 24444321 111121 223556667888999997433 222
Q ss_pred -cCCCCCceEEEEEEEc
Q 021911 283 -LEPFERDHACVVGGYR 298 (305)
Q Consensus 283 -l~p~~~~~~~vv~~~~ 298 (305)
--|..|...++||..+
T Consensus 152 yGvPQ~ReRvfiig~~~ 168 (328)
T COG0270 152 YGVPQSRERVFIVGFRR 168 (328)
T ss_pred cCCCCCccEEEEEEecC
Confidence 3577899999998664
No 271
>PTZ00146 fibrillarin; Provisional
Probab=96.88 E-value=0.0023 Score=58.57 Aligned_cols=11 Identities=27% Similarity=-0.043 Sum_probs=5.2
Q ss_pred ccCCCCcEEEE
Q 021911 236 YFLKAGGHFVI 246 (305)
Q Consensus 236 ~~LkpGG~lv~ 246 (305)
+.|+..|+-.+
T Consensus 257 ~~L~~~GF~~~ 267 (293)
T PTZ00146 257 QKLKKEGLKPK 267 (293)
T ss_pred HHHHHcCCceE
Confidence 45555554433
No 272
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.86 E-value=0.0095 Score=51.30 Aligned_cols=103 Identities=14% Similarity=0.254 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChH---HHHHHHHHHHcC------CCeEEEEccCCCCcccccCCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR---SGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~---~~~~l~~~a~~~------~nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.-.+.|||||-|.+...|+..+ |+..+++.||-.. .+.+-++.+... +||.....++....+.-+...+.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3578999999999999999987 6778999998532 233333333322 56766666654433221222344
Q ss_pred eEEEEeCCCh-----------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQP-----------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~-----------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+-++...|.| ....++. +...+|+++|.++..|
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~-eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLS-EYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHH-HHHhhhhcCceEEEEe
Confidence 4444444422 2334444 7788999999999988
No 273
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.005 Score=59.86 Aligned_cols=119 Identities=24% Similarity=0.211 Sum_probs=77.1
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHH---hhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEc
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVS---DIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE 199 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la---~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~ 199 (305)
.+.+..++++....-..+.-..|+-+|+|-|-++.... +....+-++|+||-+|.++..+..+..+. ..|+++..
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEec
Confidence 55555556543221111122457778999998765544 33445668999999998877766543332 67999999
Q ss_pred cCCCCcccccCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 200 DARHPAKYRMLVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|++.+... ..+.|++++... ...-.+.|. -+.++|||.|..+=+
T Consensus 429 DMR~w~ap---~eq~DI~VSELLGSFGDNELSPECLD-G~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 429 DMRKWNAP---REQADIIVSELLGSFGDNELSPECLD-GAQKFLKPDGISIPS 477 (649)
T ss_pred cccccCCc---hhhccchHHHhhccccCccCCHHHHH-HHHhhcCCCceEccc
Confidence 99998631 368999987544 223344555 677999999765543
No 274
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0026 Score=52.82 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=73.1
Q ss_pred eecCchhhHHHHHHHccccccCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-----C
Q 021911 119 RIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----T 192 (305)
Q Consensus 119 ~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-----~ 192 (305)
.+| |....|+..+|.- .+.-.+.+||++|.|- |..++.+|... +...|.-.|-++.+++.+.+....+ +
T Consensus 9 ciw-pseeala~~~l~~---~n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~t 83 (201)
T KOG3201|consen 9 CIW-PSEEALAWTILRD---PNKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLT 83 (201)
T ss_pred Eec-ccHHHHHHHHHhc---hhHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccc
Confidence 455 3345666667631 1233468999999984 44445555544 5678998999987777766554433 1
Q ss_pred CeEEEEccCCCCcccccCCCcEeEEEEeC-C-ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDV-A-QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 193 nI~~~~~D~~~~~~~~~~~~~fD~V~~d~-~-~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.......+....... .....||.|++.- . ..+..+.|...++++|+|-|.-+++.
T Consensus 84 sc~vlrw~~~~aqsq-~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 84 SCCVLRWLIWGAQSQ-QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred eehhhHHHHhhhHHH-HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 121111222111111 1235899999733 3 33344455558999999999877765
No 275
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.70 E-value=0.044 Score=46.10 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=73.4
Q ss_pred ecCCCccHHHHHhhhCCCcEEEEEeCChHH--H------HHHHHHHHcCCCeE-EEEccCCCCcccc-cCCCcEeEEEEe
Q 021911 151 GAASGTTVSHVSDIVGPNGVVYAVEFSHRS--G------RDLVNMAKKRTNVI-PIIEDARHPAKYR-MLVGMVDVIFSD 220 (305)
Q Consensus 151 G~G~G~~t~~la~~~~~~~~V~avD~s~~~--~------~~l~~~a~~~~nI~-~~~~D~~~~~~~~-~~~~~fD~V~~d 220 (305)
|=|.=.++..|+........|+|.-+.... . ...++..++ .++. ..-.|++.+.... .....||.|+-|
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 334444666777776545577777554211 1 122222222 3333 3456888776542 134689999999
Q ss_pred CCChh----------------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecC
Q 021911 221 VAQPD----------------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLE 284 (305)
Q Consensus 221 ~~~~~----------------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~ 284 (305)
.|+.- ....+. +|.++|+++|.+.++.+... .-+.+.+ .+..++.||.+.+...++
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~-Sa~~~L~~~G~IhVTl~~~~---py~~W~i----~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFK-SASQLLKPDGEIHVTLKDGQ---PYDSWNI----EELAAEAGLVLVRKVPFD 154 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEeCCCC---CCccccH----HHHHHhcCCEEEEEecCC
Confidence 99432 122333 79999999999999983221 1122222 233367899999888665
Q ss_pred C
Q 021911 285 P 285 (305)
Q Consensus 285 p 285 (305)
+
T Consensus 155 ~ 155 (166)
T PF10354_consen 155 P 155 (166)
T ss_pred H
Confidence 4
No 276
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.64 E-value=0.0062 Score=59.06 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=77.4
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-CcccccCCCcEeEEEEeCCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~~~~~~~~fD~V~~d~~~ 223 (305)
..|+|+.++.|+|+..|.+. + |..+-+.+....+.+...-.|- +.-+..|..+ ++.| +.+||+|.++-..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTY---PRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTY---PRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCC---Ccchhheehhhhh
Confidence 58999999999999999876 2 5555444422224444444442 3334456543 3444 5799999986551
Q ss_pred h------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEeecCC-CCCceEEEEEE
Q 021911 224 P------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEP-FERDHACVVGG 296 (305)
Q Consensus 224 ~------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~l~p-~~~~~~~vv~~ 296 (305)
. +...+|. ++-+.|+|+|.+++-. ...+..+....++...|+..-. +.+. -....-+++++
T Consensus 438 s~~~~rC~~~~ill-EmDRILRP~G~~iiRD----------~~~vl~~v~~i~~~lrW~~~~~-d~e~g~~~~EkiL~~~ 505 (506)
T PF03141_consen 438 SLYKDRCEMEDILL-EMDRILRPGGWVIIRD----------TVDVLEKVKKIAKSLRWEVRIH-DTEDGPDGPEKILICQ 505 (506)
T ss_pred hhhcccccHHHHHH-HhHhhcCCCceEEEec----------cHHHHHHHHHHHHhCcceEEEE-ecCCCCCCCceEEEEE
Confidence 1 2445565 9999999999999975 1222222233345666766533 3322 11244455554
No 277
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.57 E-value=0.011 Score=60.40 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=78.0
Q ss_pred CCCCEEEEEecCCCccHHHHHhhh------CC-----CcEEEEEeCChHHHHHHHHHHH-------------cC------
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIV------GP-----NGVVYAVEFSHRSGRDLVNMAK-------------KR------ 191 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~------~~-----~~~V~avD~s~~~~~~l~~~a~-------------~~------ 191 (305)
++.-+|||+|-|+|...+.+.+.+ .+ .-+++++|..|-..+++.+..+ +.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344799999999999888777665 12 3478899975422222222211 00
Q ss_pred ---------C--CeEEEEccCCCCcccccCCCcEeEEEEeCCCh------hHHHHHHHHHhccCCCCcEEEEEEcccccC
Q 021911 192 ---------T--NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP------DQARILALNASYFLKAGGHFVISIKANCID 254 (305)
Q Consensus 192 ---------~--nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~ 254 (305)
. +++++..|+.+.... +...||+|+.|.-.| +..+++. ++.++++|+++|+-.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~--~~~~~d~~~lD~FsP~~np~~W~~~~~~-~l~~~~~~~~~~~t~t~----- 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQ--LDARADAWFLDGFAPAKNPDMWSPNLFN-ALARLARPGATLATFTS----- 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHh--ccccccEEEeCCCCCccChhhccHHHHH-HHHHHhCCCCEEEEeeh-----
Confidence 1 234556777654322 235699999997533 5777887 99999999999986551
Q ss_pred CCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 255 STVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 255 ~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
.. .....|+++||++..
T Consensus 208 ----a~----~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 208 ----AG----FVRRGLQEAGFTVRK 224 (662)
T ss_pred ----HH----HHHHHHHHcCCeeee
Confidence 11 124667788888764
No 278
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.52 E-value=0.0075 Score=56.99 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=72.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
...|+..++|++|+-+..+..++.. ..+.++++|.++..+...-..+... ..-.++..|+-+.+.. +..||.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe---dn~fd~ 181 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE---DNTFDG 181 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC---ccccCc
Confidence 5678889999999999999999987 4568999999974332222111111 2222377787666533 578999
Q ss_pred EEE-eCC--ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFS-DVA--QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~-d~~--~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|.+ +.. .++....+. +++++|||||.++...
T Consensus 182 v~~ld~~~~~~~~~~~y~-Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 182 VRFLEVVCHAPDLEKVYA-EIYRVLKPGGLFIVKE 215 (364)
T ss_pred EEEEeecccCCcHHHHHH-HHhcccCCCceEEeHH
Confidence 965 555 356666776 9999999999998864
No 279
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.48 E-value=0.023 Score=52.21 Aligned_cols=79 Identities=8% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCC-C-cccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARH-P-AKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~-~-~~~~~~~~~fD~V 217 (305)
.-++||||+|.-..--.|+... ...+++|.|+++.+++.+.++.+.+ .+|.++...-.. . .......+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5689999999876543444333 2579999999998887777776665 457777553211 1 1111123589999
Q ss_pred EEeCCC
Q 021911 218 FSDVAQ 223 (305)
Q Consensus 218 ~~d~~~ 223 (305)
+||+|.
T Consensus 182 mCNPPF 187 (299)
T PF05971_consen 182 MCNPPF 187 (299)
T ss_dssp EE----
T ss_pred ecCCcc
Confidence 999993
No 280
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.46 E-value=0.005 Score=54.47 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=46.8
Q ss_pred CCCCC--CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHH---HHHHHHHHcC--------CCeEEEEccCCCCcc
Q 021911 140 WIKPG--ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKR--------TNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g--~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~---~~l~~~a~~~--------~nI~~~~~D~~~~~~ 206 (305)
.++++ .+|||.-||-|.-+..+|.. + ++|+++|-||-.. .+-++.+... .+|++++.|..+...
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 45665 49999999999999999964 4 5899999997331 2223333322 368999999987654
Q ss_pred cccCCCcEeEEEEeCCChh
Q 021911 207 YRMLVGMVDVIFSDVAQPD 225 (305)
Q Consensus 207 ~~~~~~~fD~V~~d~~~~~ 225 (305)
....+||+|++|+..|.
T Consensus 147 --~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 147 --QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp --CHSS--SEEEE--S---
T ss_pred --hcCCCCCEEEECCCCCC
Confidence 24679999999998553
No 281
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.33 E-value=0.077 Score=47.36 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.+..+|||||||-=-++...... .+...++|+|++...++-+......- .+..+.+.|+..... ....|+.+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~----~~~~DlaL 176 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP----KEPADLAL 176 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT----TSEESEEE
T ss_pred cCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC----CCCcchhh
Confidence 3455789999999886666655544 24569999999996655544443333 678888889866532 46789998
Q ss_pred EeCC--ChhHH-HHHHHHHhccCCCCcEEEEEEcccccCCC-CchhhhHHHHHHHH-HHCCCcE
Q 021911 219 SDVA--QPDQA-RILALNASYFLKAGGHFVISIKANCIDST-VPAEAVFQSEVKKL-QQDQFKP 277 (305)
Q Consensus 219 ~d~~--~~~~~-~~l~~~a~~~LkpGG~lv~s~~~~~i~~~-~~~~~v~~~~~~~l-~~~Gf~~ 277 (305)
+--. +-+|. +-...+..+.+... ++++|.+..++... .-.+.-...+++.+ ...++.+
T Consensus 177 llK~lp~le~q~~g~g~~ll~~~~~~-~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 177 LLKTLPCLERQRRGAGLELLDALRSP-HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp EET-HHHHHHHSTTHHHHHHHHSCES-EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHHHhcchHHHHHHHhCCC-eEEEeccccccccCccccccCHHHHHHHhcccCCcee
Confidence 7443 33322 22212333445444 78888766665442 33333334444444 4556653
No 282
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.31 E-value=0.024 Score=51.09 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.+..||-+| -.-.+++++| +.+-.-+|..||++++.+.-..+.+++. .||+.++.|++++.+.. +...||+.+.|
T Consensus 152 ~gK~I~vvG-DDDLtsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~-~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED-LKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHH-hcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH-HHhhCCeeecC
Confidence 356798888 2223333333 3233347888999985444333444443 68999999999986652 45799999999
Q ss_pred CCChh-HHHHHHHHHhccCCCC---cEEEEEE
Q 021911 221 VAQPD-QARILALNASYFLKAG---GHFVISI 248 (305)
Q Consensus 221 ~~~~~-~~~~l~~~a~~~LkpG---G~lv~s~ 248 (305)
+|..- -.+++.-.-...||-- |++.++.
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 99543 2233332455566665 7888886
No 283
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.25 E-value=0.0068 Score=54.75 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=68.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
...+..+||+|||.|-.+.. .|.+.+++.|++. .++..+++........+|+.+.+.. ..+||.+++-
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~----~l~~~ak~~~~~~~~~ad~l~~p~~---~~s~d~~lsi 110 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCT----GLLGGAKRSGGDNVCRADALKLPFR---EESFDAALSI 110 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhh----hhccccccCCCceeehhhhhcCCCC---CCccccchhh
Confidence 34589999999999965433 2667899999998 7777776543226778898877632 5799998864
Q ss_pred CC-----C-hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VA-----Q-PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~-----~-~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.. . .....++. +..+.|+|||...+..
T Consensus 111 avihhlsT~~RR~~~l~-e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALE-ELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhHHHHHHHHH-HHHHHhcCCCceEEEE
Confidence 43 2 23445555 8999999999876654
No 284
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=96.19 E-value=0.47 Score=39.75 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
...|+..+++ ...+..+|+=|||=+ .-.++.+...+..+++-+|++.+. .. -..+ .++.-|...+
T Consensus 12 ~~~l~~~l~~-----~~~~~~~iaclstPs--l~~~l~~~~~~~~~~~Lle~D~RF----~~---~~~~-~F~fyD~~~p 76 (162)
T PF10237_consen 12 AEFLARELLD-----GALDDTRIACLSTPS--LYEALKKESKPRIQSFLLEYDRRF----EQ---FGGD-EFVFYDYNEP 76 (162)
T ss_pred HHHHHHHHHH-----hcCCCCEEEEEeCcH--HHHHHHhhcCCCccEEEEeecchH----Hh---cCCc-ceEECCCCCh
Confidence 3445555543 234568898888733 333333322355689999999833 21 1124 6778888776
Q ss_pred cccc-cCCCcEeEEEEeCCC--hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYR-MLVGMVDVIFSDVAQ--PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~-~~~~~fD~V~~d~~~--~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .+..+||+|++|+|. .+-...+...+..++|+++.++++|
T Consensus 77 ~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 77 EELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 5431 234799999999994 3333344435666778989999987
No 285
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.0074 Score=56.02 Aligned_cols=99 Identities=24% Similarity=0.216 Sum_probs=60.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc--cc---cCCCcEeEEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK--YR---MLVGMVDVIFS 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~--~~---~~~~~fD~V~~ 219 (305)
.+|||+|+|+|+-..++-+.+..--.++-+|.|+ ++++......+ ||.+...|.+..+- .+ .....|++|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~--nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAE--NVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHh--hcccccCCCCCCccchhccCCCccceeehhhh
Confidence 5699999999998888888774444677789887 44444444443 34333333322210 01 11246777764
Q ss_pred -eCCC------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 -DVAQ------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 -d~~~------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|-.. |.|. .+. ..+.+|.|||.|+|..
T Consensus 192 ~~eLl~d~~ek~i~~-~ie-~lw~l~~~gg~lVivE 225 (484)
T COG5459 192 LDELLPDGNEKPIQV-NIE-RLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhccccCcchHHH-HHH-HHHHhccCCCeEEEEe
Confidence 2222 2222 333 7889999999999987
No 286
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.05 E-value=0.049 Score=49.60 Aligned_cols=145 Identities=15% Similarity=0.087 Sum_probs=86.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH----HcC--CCeEEEEccCCCCcccccCCCcEeEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA----KKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a----~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
-++||-+|-|-|.+....+.+ ..-.++.-+|++...++--++.. ... +.|.++.+|-..+... ...++||+|
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-~~~~~~dVi 199 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-LKENPFDVI 199 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH-hccCCceEE
Confidence 489999999999998888876 22346788888873322222111 111 6788888987655432 125799999
Q ss_pred EEeCCChh-------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE--EeecCCCCC
Q 021911 218 FSDVAQPD-------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE--QVTLEPFER 288 (305)
Q Consensus 218 ~~d~~~~~-------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e--~~~l~p~~~ 288 (305)
+.|...|. |...+. -+.+.||++|++++.- .|++.. .-+.++...+-..-|...+ .-++..|+-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~-~v~~aLk~dgv~~~q~--ec~wl~----~~~i~e~r~~~~~~f~~t~ya~ttvPTyps 272 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFG-LVLDALKGDGVVCTQG--ECMWLH----LDYIKEGRSFCYVIFDLTAYAITTVPTYPS 272 (337)
T ss_pred EEecCCccchHHHHHHHHHHH-HHHHhhCCCcEEEEec--ceehHH----HHHHHHHHHhHHHhcCccceeeecCCCCcc
Confidence 99887442 444444 6789999999998875 443222 1223333333222244332 223445665
Q ss_pred ceEEEEEEE
Q 021911 289 DHACVVGGY 297 (305)
Q Consensus 289 ~~~~vv~~~ 297 (305)
.+..++-..
T Consensus 273 g~igf~l~s 281 (337)
T KOG1562|consen 273 GRIGFMLCS 281 (337)
T ss_pred ceEEEEEec
Confidence 555555443
No 287
>PRK13699 putative methylase; Provisional
Probab=95.92 E-value=0.023 Score=50.33 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=47.8
Q ss_pred eEEEEccCCCCcccccCCCcEeEEEEeCCCh------------------hHHHHHHHHHhccCCCCcEEEEEEcccccCC
Q 021911 194 VIPIIEDARHPAKYRMLVGMVDVIFSDVAQP------------------DQARILALNASYFLKAGGHFVISIKANCIDS 255 (305)
Q Consensus 194 I~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~------------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~ 255 (305)
+++++.|+.+.... +.++++|+||.|+|-- .....+. +++++|||+|.+++.. . ..
T Consensus 2 ~~l~~gD~le~l~~-lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~-E~~RVLKpgg~l~if~---~-~~ 75 (227)
T PRK13699 2 SRFILGNCIDVMAR-FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACN-EMYRVLKKDALMVSFY---G-WN 75 (227)
T ss_pred CeEEechHHHHHHh-CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHH-HHHHHcCCCCEEEEEe---c-cc
Confidence 35667787654322 3467999999999831 1224454 8999999999888653 1 00
Q ss_pred CCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 256 TVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 256 ~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
. .......+++.||.+...+
T Consensus 76 --~----~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 76 --R----VDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred --c----HHHHHHHHHHCCCEEeeEE
Confidence 0 1122445678899877644
No 288
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.89 E-value=0.016 Score=55.22 Aligned_cols=101 Identities=22% Similarity=0.078 Sum_probs=69.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---C-CeEEEEccCCCCcccccCCCcEeEEE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T-NVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~-nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
...+|||.=||+|.=++-.+..+.....|++-|+|+.+++.+.++++.+ . .+++.+.|+..... .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--SRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--HSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--hccccCCEEE
Confidence 3469999999999999999988655568999999998877777776655 3 47888889866532 1357899999
Q ss_pred EeCC-ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVA-QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~-~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+- .|. ..|. .|.+.+|.||.|.++.
T Consensus 127 lDPfGSp~--pfld-sA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPFGSPA--PFLD-SALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--SS--H--HHHH-HHHHHEEEEEEEEEEE
T ss_pred eCCCCCcc--HhHH-HHHHHhhcCCEEEEec
Confidence 9876 332 3344 7778999999998864
No 289
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.58 E-value=0.017 Score=52.51 Aligned_cols=131 Identities=19% Similarity=0.165 Sum_probs=80.4
Q ss_pred ccccCc-ceeEeecCCCceeeeeecCchhhHHHH----HHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEE
Q 021911 98 EAVYNE-KRISVQNEDGTKVEYRIWNPFRSKLAA----AVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVY 172 (305)
Q Consensus 98 ~~~y~e-~~~~~~d~~~~~~~~~~~~~~~s~l~a----~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~ 172 (305)
..+|++ +++..-+. .-++.|+|...++.. ..+..+. ....+..|.||-||-|++|+...-.. ....|+
T Consensus 150 ~~L~Gd~gWV~~v~N----GI~~~~d~t~~MFS~GN~~EK~Rv~~--~sc~~eviVDLYAGIGYFTlpflV~a-gAk~V~ 222 (351)
T KOG1227|consen 150 QPLYGDLGWVKHVQN----GITQIWDPTKTMFSRGNIKEKKRVLN--TSCDGEVIVDLYAGIGYFTLPFLVTA-GAKTVF 222 (351)
T ss_pred ccccccccceeehhc----CeEEEechhhhhhhcCcHHHHHHhhh--cccccchhhhhhcccceEEeehhhcc-CccEEE
Confidence 345554 44444442 466778776655432 1111111 23456899999999999999544333 456999
Q ss_pred EEeCChHHHHHHHHHHHcCCCe----EEEEccCCCCcccccCCCcEeEEEEeCC-ChhHHHHHHHHHhccCCCCcE
Q 021911 173 AVEFSHRSGRDLVNMAKKRTNV----IPIIEDARHPAKYRMLVGMVDVIFSDVA-QPDQARILALNASYFLKAGGH 243 (305)
Q Consensus 173 avD~s~~~~~~l~~~a~~~~nI----~~~~~D~~~~~~~~~~~~~fD~V~~d~~-~~~~~~~l~~~a~~~LkpGG~ 243 (305)
|+|.+|++++.+...++.+ |+ ..+.+|-+.+. +....|.|.+-+- ...+. .. .|.+.|||.|-
T Consensus 223 A~EwNp~svEaLrR~~~~N-~V~~r~~i~~gd~R~~~----~~~~AdrVnLGLlPSse~~--W~-~A~k~Lk~egg 290 (351)
T KOG1227|consen 223 ACEWNPWSVEALRRNAEAN-NVMDRCRITEGDNRNPK----PRLRADRVNLGLLPSSEQG--WP-TAIKALKPEGG 290 (351)
T ss_pred EEecCHHHHHHHHHHHHhc-chHHHHHhhhccccccC----ccccchheeeccccccccc--hH-HHHHHhhhcCC
Confidence 9999999999988888775 32 23344555443 2357888876443 22222 12 45678888665
No 290
>PHA01634 hypothetical protein
Probab=95.58 E-value=0.045 Score=43.73 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=47.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
.+.+|||+|+..|..++.++.. ....|+++|.++.....+.+..+. .||.-...-...++ -..+.||+...|--
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~-nnI~DK~v~~~eW~---~~Y~~~Di~~iDCe 101 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAY-FNICDKAVMKGEWN---GEYEDVDIFVMDCE 101 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhh-heeeeceeeccccc---ccCCCcceEEEEcc
Confidence 4689999999999999999976 567999999999544444333332 22211111111121 13478998887654
No 291
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.57 E-value=0.25 Score=44.22 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--------CCeEEEEccCCCCcccccCCCc-E
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------TNVIPIIEDARHPAKYRMLVGM-V 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--------~nI~~~~~D~~~~~~~~~~~~~-f 214 (305)
..+||++|+|+|...+.+|... ..+|.-.|+.. ....+.....++ ..+.....+..++.......+. |
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4579999999997666666653 45777777654 333333332222 2556666666555443333445 9
Q ss_pred eEEEE-eCC-Chh-HHHHHHHHHhccCCCCcEEEEEEc
Q 021911 215 DVIFS-DVA-QPD-QARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 215 D~V~~-d~~-~~~-~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+|++ |+. .+. ...++. -+..+|..++.++++++
T Consensus 164 DlilasDvvy~~~~~e~Lv~-tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVK-TLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cEEEEeeeeecCCcchhHHH-HHHHHHhcCCeEEEEEe
Confidence 99987 333 222 222222 44567777777777773
No 292
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.42 E-value=0.24 Score=38.36 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=63.7
Q ss_pred cCCCccHHHHHhhhCCCc-EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-CCCcEeEEEEeCCChhHHHH
Q 021911 152 AASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQPDQARI 229 (305)
Q Consensus 152 ~G~G~~t~~la~~~~~~~-~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~~~~~~~~~ 229 (305)
||.|..+..+++.+.... .|+.+|.++ +..+.+... .+.++.+|+++...+.. ....+|.|++..........
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~----~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDP----ERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSH----HHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCc----HHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence 788899999998876566 799999999 444445443 48899999988764421 23589999988876655544
Q ss_pred HHHHHhccCCCCcEEEEEE
Q 021911 230 LALNASYFLKAGGHFVISI 248 (305)
Q Consensus 230 l~~~a~~~LkpGG~lv~s~ 248 (305)
+. ...+-+.|..+++...
T Consensus 79 ~~-~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 79 IA-LLARELNPDIRIIARV 96 (116)
T ss_dssp HH-HHHHHHTTTSEEEEEE
T ss_pred HH-HHHHHHCCCCeEEEEE
Confidence 54 4556667777777765
No 293
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.17 E-value=0.11 Score=46.59 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=57.1
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+.+++...|||+.+|.+|-.|.++ .-.||+||.-+ |.+.......|+....|-..+.+. ...+|-.+|
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-----ma~sL~dtg~v~h~r~DGfk~~P~---r~~idWmVC 276 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-----MAQSLMDTGQVTHLREDGFKFRPT---RSNIDWMVC 276 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc---ceEEEEeccch-----hhhhhhcccceeeeeccCcccccC---CCCCceEEe
Confidence 5678999999999999999998876 35899999876 333444446788888898776543 368999999
Q ss_pred eCC
Q 021911 220 DVA 222 (305)
Q Consensus 220 d~~ 222 (305)
|+.
T Consensus 277 DmV 279 (358)
T COG2933 277 DMV 279 (358)
T ss_pred ehh
Confidence 998
No 294
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.09 E-value=0.041 Score=44.02 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=53.3
Q ss_pred CeEEEEccCCCCcccccCCCcEeEEEEeCCC------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHH
Q 021911 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSE 266 (305)
Q Consensus 193 nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~ 266 (305)
++.+...|+.+..+. +...||+|+.|.-. .+..+++. ++.++++|+|.|.-.+ + . ...
T Consensus 32 ~L~L~~gDa~~~l~~--l~~~~Da~ylDgFsP~~nPelWs~e~~~-~l~~~~~~~~~l~Tys---~------a----~~V 95 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQ--LDARFDAWYLDGFSPAKNPELWSEELFK-KLARLSKPGGTLATYS---S------A----GAV 95 (124)
T ss_dssp EEEEEES-HHHHHHH--B-T-EEEEEE-SS-TTTSGGGSSHHHHH-HHHHHEEEEEEEEES-----------B----HHH
T ss_pred EEEEEEcHHHHHHHh--CcccCCEEEecCCCCcCCcccCCHHHHH-HHHHHhCCCcEEEEee---c------h----HHH
Confidence 456777887654332 34799999998753 24677887 9999999998876654 1 1 112
Q ss_pred HHHHHHCCCcEeEEeecCCCCCceEEEEEEE
Q 021911 267 VKKLQQDQFKPFEQVTLEPFERDHACVVGGY 297 (305)
Q Consensus 267 ~~~l~~~Gf~~~e~~~l~p~~~~~~~vv~~~ 297 (305)
...|++.||.+.+.. .+.+..-+.+|.|
T Consensus 96 r~~L~~aGF~v~~~~---g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 96 RRALQQAGFEVEKVP---GFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHCTEEEEEEE----STTSSEEEEEEC
T ss_pred HHHHHHcCCEEEEcC---CCCCcchheEEEc
Confidence 467789999987654 4444455566654
No 295
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.09 E-value=0.016 Score=55.06 Aligned_cols=76 Identities=24% Similarity=0.187 Sum_probs=60.7
Q ss_pred cCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEE
Q 021911 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIP 196 (305)
Q Consensus 121 ~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~ 196 (305)
||+..+..-..+.. ..++++.|.|++||-|-++..++.. .+.||+.|+++++++-+..+++.+ .+|+.
T Consensus 232 WnsRL~~Eherlsg-----~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei 303 (495)
T KOG2078|consen 232 WNSRLSHEHERLSG-----LFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEI 303 (495)
T ss_pred eeccchhHHHHHhh-----ccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheee
Confidence 88777666666664 3578999999999999999999987 389999999998877777776655 35888
Q ss_pred EEccCCCC
Q 021911 197 IIEDARHP 204 (305)
Q Consensus 197 ~~~D~~~~ 204 (305)
+..|+..+
T Consensus 304 ~Nmda~~F 311 (495)
T KOG2078|consen 304 FNMDAKDF 311 (495)
T ss_pred ecccHHHH
Confidence 88877544
No 296
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.03 E-value=0.067 Score=47.36 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=4.8
Q ss_pred CCccHHHHHhh
Q 021911 154 SGTTVSHVSDI 164 (305)
Q Consensus 154 ~G~~t~~la~~ 164 (305)
+|...+.+|+.
T Consensus 193 sGRdL~nmAkk 203 (317)
T KOG1596|consen 193 SGRDLINMAKK 203 (317)
T ss_pred chHHHHHHhhc
Confidence 34444444443
No 297
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.96 E-value=0.021 Score=49.44 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=32.8
Q ss_pred chhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH
Q 021911 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (305)
Q Consensus 123 ~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~ 180 (305)
+....|+..++. +...+++.|||..||+|+++..+... + .+.+++|+++..
T Consensus 175 ~kP~~l~~~lI~----~~t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y 225 (231)
T PF01555_consen 175 QKPVELIERLIK----ASTNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEY 225 (231)
T ss_dssp -S-HHHHHHHHH----HHS-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHH
T ss_pred cCCHHHHHHHHH----hhhccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHH
Confidence 344556666653 24578999999999999776665554 3 479999999943
No 298
>PRK11524 putative methyltransferase; Provisional
Probab=94.73 E-value=0.066 Score=48.94 Aligned_cols=54 Identities=24% Similarity=0.155 Sum_probs=38.7
Q ss_pred CeEEEEccCCCCcccccCCCcEeEEEEeCCChh-------------------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD-------------------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 193 nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~-------------------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+..+++.|+.+.... +..++||+|++|+|... ....+. ++.++|||+|.|++..
T Consensus 8 ~~~i~~gD~~~~l~~-l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKK-IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWID-ECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHh-cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHH-HHHHHhCCCcEEEEEc
Confidence 456788888765322 23579999999999310 123455 8999999999999874
No 299
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.63 E-value=0.071 Score=50.69 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-Ccc-c-cc-CCCcE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAK-Y-RM-LVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~-~-~~-~~~~f 214 (305)
.+.++.+||.+|||+ |..+..+|+.++ ...|+++|.++ +..+.+++...+..+..+-.+ ... . .. ....+
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~----~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVP----ERLEMARSHLGAETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCH----HHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCC
Confidence 567889999999877 778888888864 23699999998 445555543223322211111 100 0 01 12368
Q ss_pred eEEEEeCC------------------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVA------------------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~------------------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+||-... .++....+. .+.+.|+++|+++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALR-EAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHH-HHHHHhccCCEEEEEc
Confidence 98886542 123344565 7889999999998864
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=94.51 E-value=0.037 Score=50.59 Aligned_cols=55 Identities=20% Similarity=0.047 Sum_probs=37.8
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHH
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM 187 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~ 187 (305)
..|...++. +.-.+++.|||..||+|+++....+. + .+.+++|+++...+-+.+.
T Consensus 195 ~~L~erlI~----~~S~~GD~VLDPF~GSGTT~~AA~~l-g--R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIIL----ASSNPGDIVLDPFAGSFTTGAVAKAS-G--RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHH----HhCCCCCEEEECCCCCcHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHH
Confidence 345555442 24578999999999999777665554 3 4799999999554444333
No 301
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.22 Score=46.80 Aligned_cols=98 Identities=21% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
..+|||.-+|+|.=.+-+|...+.. .|+.-|+||.+++-+.++++.+ .++..+..|+...... ....||+|=.|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~--~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE--LHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh--cCCCccEEecCC
Confidence 6899999999999999999876543 8999999998877776666655 3455666777554322 236899998887
Q ss_pred C-ChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 222 A-QPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 222 ~-~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
- .|. ..+. .|.+.++.+|.|.++
T Consensus 130 FGSPa--PFlD-aA~~s~~~~G~l~vT 153 (380)
T COG1867 130 FGSPA--PFLD-AALRSVRRGGLLCVT 153 (380)
T ss_pred CCCCc--hHHH-HHHHHhhcCCEEEEE
Confidence 5 332 2233 666788889999885
No 302
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.15 E-value=0.75 Score=42.45 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHHccccccCCC-----CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChH
Q 021911 127 KLAAAVLGGVDNIWIK-----PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR 179 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~-----~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~ 179 (305)
.+...++..|..+.+. ..-+||--|||.|.++..||.. +. .+-+-|+|--
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~ 183 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYF 183 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh-cc--cccccHHHHH
Confidence 4444454444433332 3468999999999999999987 33 3445577753
No 303
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.05 E-value=0.38 Score=45.06 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=16.4
Q ss_pred CCCCEEEEEecCCCccHHHHHhh
Q 021911 142 KPGARVLYLGAASGTTVSHVSDI 164 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~ 164 (305)
....+|+|+||.+|..|+.+.+.
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHH
Confidence 33479999999999998876644
No 304
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.92 E-value=0.36 Score=44.91 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC--CcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH--PAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~--~~~~~~~~~~fD~ 216 (305)
...++++||-.||| .|..+..+|+..+ ...|+++|.++.. ++.+++.. ...+ .|..+ ..........+|+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~----~~~a~~lG-a~~v-i~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRS----LSLAREMG-ADKL-VNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHH----HHHHHHcC-CcEE-ecCCcccHHHHhccCCCCCE
Confidence 45578999998864 2334455666643 2368999999844 34444331 1111 11111 1111011235899
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||-....+. .+. .+.++|+++|++++.-
T Consensus 239 vid~~G~~~---~~~-~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGHPS---SIN-TCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCCHH---HHH-HHHHHhhcCCEEEEEc
Confidence 986655543 233 5667999999998763
No 305
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=1 Score=40.32 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCC---cEEEEEeCChHHHHHHHHH-HHcCCC--eEEEEccCCCCcccccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNM-AKKRTN--VIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~---~~V~avD~s~~~~~~l~~~-a~~~~n--I~~~~~D~~~~~~~~~~~~~f 214 (305)
+......+|+|+|+-.++..|.+.+.+. .+.+.+|+|...++...+. +...+. |.-++.|....... ++..-
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~--~~~~~ 153 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAE--LPRGG 153 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhc--ccCCC
Confidence 4557899999999999999999887543 4788999998655543333 333444 44556665443221 22333
Q ss_pred eEEEEeCC------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVA------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-.+++.+- .|+....+..++...|.||-+|++-+
T Consensus 154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 34444222 46666666658999999999999976
No 306
>PTZ00357 methyltransferase; Provisional
Probab=93.78 E-value=0.45 Score=48.28 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=60.9
Q ss_pred EEEEEecCCCccHHHHHhh---hCCCcEEEEEeCChHHHHHHHHHH-H--cCC--------CeEEEEccCCCCcccc---
Q 021911 146 RVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLVNMA-K--KRT--------NVIPIIEDARHPAKYR--- 208 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~---~~~~~~V~avD~s~~~~~~l~~~a-~--~~~--------nI~~~~~D~~~~~~~~--- 208 (305)
.|+-+|||-|-++....+. .+-+.+|+|||-++.++.-++... . ... .|++|..|++.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5889999999977655543 344568999999965432222221 1 112 3899999999874320
Q ss_pred -----cCCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCC----CcE
Q 021911 209 -----MLVGMVDVIFSDVA-----QPDQARILALNASYFLKA----GGH 243 (305)
Q Consensus 209 -----~~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~Lkp----GG~ 243 (305)
....++|+||+... ...-.+.|. -+.++||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLD-GaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLE-AFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHH-HHHHhhhhhcccccc
Confidence 11237999998554 222334444 56678876 665
No 307
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.75 E-value=0.43 Score=44.48 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEecCCCc-cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~-~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.++++++||-+|||+=. .+..++..+....+|+++|.++..+ +.+++.... ....+.. . ...+|+||
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~----~~a~~~~~~-~~~~~~~----~---~~g~d~vi 227 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL----DLFSFADET-YLIDDIP----E---DLAVDHAF 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH----HHHhhcCce-eehhhhh----h---ccCCcEEE
Confidence 35789999999875322 3344455422235799999998433 233321111 1111111 0 12489888
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
-....+.....+. .+.++|+++|++++.
T Consensus 228 D~~G~~~~~~~~~-~~~~~l~~~G~iv~~ 255 (341)
T cd08237 228 ECVGGRGSQSAIN-QIIDYIRPQGTIGLM 255 (341)
T ss_pred ECCCCCccHHHHH-HHHHhCcCCcEEEEE
Confidence 5444221233455 677899999999875
No 308
>PRK13699 putative methylase; Provisional
Probab=93.53 E-value=0.21 Score=44.14 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=38.3
Q ss_pred hHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHH
Q 021911 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188 (305)
Q Consensus 126 s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a 188 (305)
..|...++. ....+++.|||..||+|++.....+. + .+.+++|+++...+...+..
T Consensus 150 ~~l~~~~i~----~~s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 150 VTSLQPLIE----SFTHPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred HHHHHHHHH----HhCCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHH
Confidence 344554442 24568999999999999877766554 3 47899999996554444443
No 309
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.49 E-value=0.044 Score=53.08 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=77.1
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCccc-ccCCCcEeE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKY-RMLVGMVDV 216 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~-~~~~~~fD~ 216 (305)
..+..+|||.=|++|.-++..|..+..-..|+|.|++++++.....+++.+ ..|+..+.|+....-. .+....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 345679999999999999999998876678999999998877666666554 4566777787554321 123468999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|=+|+--.. ...|. .|.+.+..||.|.+.
T Consensus 187 IDLDPyGs~-s~FLD-sAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 187 IDLDPYGSP-SPFLD-SAVQAVRDGGLLCVT 215 (525)
T ss_pred EecCCCCCc-cHHHH-HHHHHhhcCCEEEEE
Confidence 999886221 23344 778899999998885
No 310
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.21 E-value=0.29 Score=46.72 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=56.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCC--CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~--~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
++||-||| |...+.+|..+-. ..+|+..|-|+...+++.+... .++++++.|+.+.+....+...+|+||...|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 57899999 6666666665422 2599999999743333222221 4799999999888654344566799998888
Q ss_pred ChhHHHHHH
Q 021911 223 QPDQARILA 231 (305)
Q Consensus 223 ~~~~~~~l~ 231 (305)
..-...++.
T Consensus 78 ~~~~~~i~k 86 (389)
T COG1748 78 PFVDLTILK 86 (389)
T ss_pred chhhHHHHH
Confidence 665555554
No 311
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.01 E-value=0.17 Score=42.10 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEE-EccCCC-CcccccCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI-IEDARH-PAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~-~~D~~~-~~~~~~~~~~fD~V~~d~ 221 (305)
++++|-+|+-.- +...+|-. ....+|+.||.++- +..+..+ +++..+ ..|+.. +..+ ..+||.+.|-.
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~-~GA~~iltveyn~L---~i~~~~~--dr~ssi~p~df~~~~~~y---~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQ-HGAAKILTVEYNKL---EIQEEFR--DRLSSILPVDFAKNWQKY---AGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCc-hhhHHHHH-cCCceEEEEeeccc---ccCcccc--cccccccHHHHHHHHHHh---hccchhhheec
Confidence 456777776532 33333333 24568999998751 1111111 223222 223322 1122 46889887633
Q ss_pred C-------------Chh-HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEe
Q 021911 222 A-------------QPD-QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV 281 (305)
Q Consensus 222 ~-------------~~~-~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~ 281 (305)
+ .|. ..+.+. ++.++|||||.|+++++.-..--.-|..-++....-.+--.||+.+...
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~-~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tf 144 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMA-KIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTF 144 (177)
T ss_pred hhccccccccCCCCCccccHHHHH-HHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeee
Confidence 3 222 344555 7889999999999998532211111233333333222234677777664
No 312
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.81 E-value=1.3 Score=43.90 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=60.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC---CCcEEEEEeCChHHHHHHHHHHHcC--------CCeEEEEccCCCCcccccCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG---PNGVVYAVEFSHRSGRDLVNMAKKR--------TNVIPIIEDARHPAKYRMLV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~---~~~~V~avD~s~~~~~~l~~~a~~~--------~nI~~~~~D~~~~~~~~~~~ 211 (305)
|...|.|++||+|.+.......+. ....+|+-|..+.. ...+..+ +.......|-...+.. ...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~----~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~ 291 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTT----YNLCRMNMILHNIDYANFNIINADTLTTKEW-ENE 291 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHH----HHHHHHHHHHcCCCccccCcccCCcCCCccc-ccc
Confidence 668999999999998876554432 12368889998843 3333321 1222223333221111 113
Q ss_pred CcEeEEEEeCCC---------h------------------hHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 212 GMVDVIFSDVAQ---------P------------------DQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 212 ~~fD~V~~d~~~---------~------------------~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
..||+|++|+|. + ....++..++...|+++|+..+..+
T Consensus 292 ~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 292 NGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred ccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 469999998871 0 0122333378889999998877764
No 313
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.57 E-value=0.29 Score=46.35 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=76.4
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH---HHH-------HHHHHHcC-CCeE
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRD-------LVNMAKKR-TNVI 195 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~---~~~-------l~~~a~~~-~nI~ 195 (305)
...+++....+++.+.+++.-.|+|+|-|..+..+|...+. ..-+++++++.. ... +.++.-++ ..+.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 34455555566678999999999999999999999987542 345677765311 111 11111122 3478
Q ss_pred EEEccCCCCcccccCCCcEeEEEEeCC--ChhHHHHHHHHHhccCCCCcEEEE
Q 021911 196 PIIEDARHPAKYRMLVGMVDVIFSDVA--QPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 196 ~~~~D~~~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
.++.++..+.....+....++|+++.. .|+...-+. ++.+-+|+|=+++-
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIIS 306 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEec
Confidence 888998887655555678899998666 344333344 67778888855543
No 314
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.26 E-value=0.59 Score=45.48 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC------CCeEEEEccCCCCc----ccccCCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPA----KYRMLVGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~------~nI~~~~~D~~~~~----~~~~~~~~ 213 (305)
..++|-+|-|.|.+.+.+-..+ +...+++|+++| .+++.+... ........|..... ........
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP----~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDP----EMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEECh----hHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccC
Confidence 5678888888899988887776 567999999999 555555443 22333334432221 11113468
Q ss_pred EeEEEEeCC--------Ch---hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVA--------QP---DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~--------~~---~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||+++.|+. || --+..+.+.+...|.|.|.+++-.
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 999998765 22 123333448999999999998865
No 315
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.19 E-value=0.61 Score=36.60 Aligned_cols=84 Identities=23% Similarity=0.232 Sum_probs=52.4
Q ss_pred CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCC-CcEeEEEEeCCChhHHHHHH
Q 021911 155 GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLV-GMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 155 G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~-~~fD~V~~d~~~~~~~~~l~ 231 (305)
|..+..+|+.++ .+|+++|.++. -++.+++..--.++..+-.++.. . .... ..+|+||-....+.. +.
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~----k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~---~~ 73 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEE----KLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDT---LQ 73 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHH----HHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHH---HH
T ss_pred HHHHHHHHHHcC--CEEEEEECCHH----HHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHH---HH
Confidence 567888998876 79999999983 44455543211222222221111 1 1112 379999987775443 33
Q ss_pred HHHhccCCCCcEEEEEE
Q 021911 232 LNASYFLKAGGHFVISI 248 (305)
Q Consensus 232 ~~a~~~LkpGG~lv~s~ 248 (305)
.+..+|+++|++++.-
T Consensus 74 -~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 74 -EAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -HHHHHEEEEEEEEEES
T ss_pred -HHHHHhccCCEEEEEE
Confidence 6668999999999975
No 316
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.79 E-value=1.6 Score=43.34 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=62.1
Q ss_pred CCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-----------Cc-c-
Q 021911 141 IKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-----------PA-K- 206 (305)
Q Consensus 141 ~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-----------~~-~- 206 (305)
..++.+||-+|||+ |..+..+|..++. .|+++|.++.+ ++.+++. ..+++..|..+ .. .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~r----le~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEV----AEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHH----HHHHHHc-CCeEEEeccccccccccchhhhcchhH
Confidence 45789999999996 5566677777763 79999999944 4444443 22322222211 00 0
Q ss_pred -------cccCCCcEeEEEEeCCChhH--HHHHHHHHhccCCCCcEEEEEE
Q 021911 207 -------YRMLVGMVDVIFSDVAQPDQ--ARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 207 -------~~~~~~~fD~V~~d~~~~~~--~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+......+|+||.....|.. ..++...+.+.+||||.++...
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00001469999987765431 2333237889999999988754
No 317
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.68 E-value=3 Score=36.07 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=50.8
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+.+||-.|+. |....++++.+ ....+|+.++-++.....+.+......+++++.+|+.+...... ....+|
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5789999875 66777777654 23458999998876555444444333478899999987643210 124578
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
.|+.+..
T Consensus 84 ~ii~~ag 90 (238)
T PRK05786 84 GLVVTVG 90 (238)
T ss_pred EEEEcCC
Confidence 8887664
No 318
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.51 E-value=0.92 Score=36.25 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe-C
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD-V 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d-~ 221 (305)
...+|+|+|.|.=..+.......+ ..|+++|+.+. .+. ..+.++.-|++++... +-...|+|.+- +
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~-------~a~--~g~~~v~DDif~P~l~--iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR-------KAP--EGVNFVVDDIFNPNLE--IYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S-------------STTEE---SSS--HH--HHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc-------ccc--cCcceeeecccCCCHH--HhcCCcEEEEeCC
Confidence 345999999987665554444433 68999999983 222 5788999999987532 23689999984 4
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|...|..++. +++.+ +.-|++.+
T Consensus 80 P~El~~~il~--lA~~v--~adlii~p 102 (127)
T PF03686_consen 80 PPELQPPILE--LAKKV--GADLIIRP 102 (127)
T ss_dssp -TTSHHHHHH--HHHHH--T-EEEEE-
T ss_pred ChHHhHHHHH--HHHHh--CCCEEEEC
Confidence 4555555554 33333 33466654
No 319
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=90.38 E-value=7.3 Score=37.28 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCccHHHHHh
Q 021911 144 GARVLYLGAASGTTVSHVSD 163 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~ 163 (305)
...|+|+||++|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 56899999999988866543
No 320
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=90.29 E-value=3.5 Score=35.54 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=65.4
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhh---CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc---ccCCCcE
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGMV 214 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~---~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~---~~~~~~f 214 (305)
++| +.|+++|...|..++..|+.+ +...+|+++|++.+. +-..+.+.+.|.++..+-+++.-. +.+..-+
T Consensus 68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~---~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKP---LDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCc---CChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 344 789999999999999888764 334689999998621 222333358999999998877421 1111212
Q ss_pred eE--EEEeCCCh--hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DV--IFSDVAQP--DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~--V~~d~~~~--~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
-- |+.|..+. .-...|. ....+|..|-++++..
T Consensus 144 ~kIfvilDsdHs~~hvLAel~-~~~pllsaG~Y~vVeD 180 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELK-LLAPLLSAGDYLVVED 180 (237)
T ss_pred CcEEEEecCCchHHHHHHHHH-HhhhHhhcCceEEEec
Confidence 23 33444432 2223333 4567888998988875
No 321
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.25 E-value=2.9 Score=36.55 Aligned_cols=96 Identities=29% Similarity=0.374 Sum_probs=57.0
Q ss_pred CCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc----ccCCCcEe
Q 021911 141 IKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY----RMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~----~~~~~~fD 215 (305)
+.++.+||..|+++ |..+..++...+ .+|++++.++... +.+++.....++ |....... ......+|
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~----~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKL----ELAKELGADHVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHH----HHHHHhCCceec--cCCcCCHHHHHHHhcCCCCC
Confidence 37789999999886 556666676654 5899999987432 233222111111 21111100 01135799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+.....+. .+. .+.+.|+++|+++...
T Consensus 204 ~vi~~~~~~~---~~~-~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGGPE---TLA-QALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCCHH---HHH-HHHHhcccCCEEEEEc
Confidence 9997766532 233 5567899999998764
No 322
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.24 E-value=0.33 Score=43.45 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=34.2
Q ss_pred HHHHHccccccC-CCCCCEEEEEecCCCccHHHHHhhhCCC-------cEEEEEeCChHHH
Q 021911 129 AAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPN-------GVVYAVEFSHRSG 181 (305)
Q Consensus 129 ~a~ll~~l~~~~-~~~g~~VLDlG~G~G~~t~~la~~~~~~-------~~V~avD~s~~~~ 181 (305)
+..++..++.+. +...-+|+|+|+|+|.++..+++.+... .+++-||+|+...
T Consensus 3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 334444344332 2224799999999999999999877532 4899999998443
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.01 E-value=2.7 Score=38.40 Aligned_cols=98 Identities=27% Similarity=0.395 Sum_probs=57.4
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc---cccCCCcEe
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK---YRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~---~~~~~~~fD 215 (305)
.+.++.+||..++| .|..+.++|...+ .+|++++.++.. .+.+++. .+..+..+-..... .......+|
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~----~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEK----LELAKEL-GADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHH----HHHHHHh-CCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 46778899998765 3567777777754 579999998843 3333322 12222211111100 011234799
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+...... ..+. .+.+.|+++|+++...
T Consensus 235 ~vid~~g~~---~~~~-~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVGTQ---PTFE-DAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCCCH---HHHH-HHHHHhhcCCEEEEEC
Confidence 888654432 2344 6778999999998753
No 324
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.93 E-value=6.7 Score=34.33 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=65.8
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCc--cHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEE
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGT--TVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPII 198 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~--~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~ 198 (305)
...+.+.|..+ .....+++++|.-+. +++.||-.. ...+++++|-.+++...+..+..... +-++|++
T Consensus 29 ~aEfISAlAAG------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvv 102 (218)
T PF07279_consen 29 VAEFISALAAG------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVV 102 (218)
T ss_pred HHHHHHHHhcc------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEe
Confidence 55566666532 234678888766443 344443221 24578999977765544444443322 3468888
Q ss_pred ccCCC-CcccccCCCcEeEEEEeCCChhHH-HHHHHHHhccCCCCcEEEEEE
Q 021911 199 EDARH-PAKYRMLVGMVDVIFSDVAQPDQA-RILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 199 ~D~~~-~~~~~~~~~~fD~V~~d~~~~~~~-~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.|... ..+ ....+|.++.|--..+.. ++|. +.+ |.|.|-+++..
T Consensus 103 g~~~e~~~~---~~~~iDF~vVDc~~~d~~~~vl~--~~~-~~~~GaVVV~~ 148 (218)
T PF07279_consen 103 GEAPEEVMP---GLKGIDFVVVDCKREDFAARVLR--AAK-LSPRGAVVVCY 148 (218)
T ss_pred cCCHHHHHh---hccCCCEEEEeCCchhHHHHHHH--Hhc-cCCCceEEEEe
Confidence 77532 221 135799999998877777 5554 344 66667766654
No 325
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=89.77 E-value=0.22 Score=45.19 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=66.7
Q ss_pred eeeeecCchhhHHHHHHHccc-cccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHH------H-HH
Q 021911 116 VEYRIWNPFRSKLAAAVLGGV-DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL------V-NM 187 (305)
Q Consensus 116 ~~~~~~~~~~s~l~a~ll~~l-~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l------~-~~ 187 (305)
..+..|.+. ..+...+...+ ++ -.-.+++|||+|||++.....+... ....|+..|++...++.. + ..
T Consensus 90 Gg~k~wecS-~dl~~~l~~e~~~~-~~~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~~~t~pn~~~~~~ 165 (282)
T KOG2920|consen 90 GGLKLWECS-VDLLPYLKEEIGAQ-MSFSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLRLVTLPNILVNSH 165 (282)
T ss_pred cceEEeecH-HHHHHHHHHHhhhh-eEecCceeEecCCcccccchhhhhh--ccceeeeEecchhheeeecccceecchh
Confidence 366777763 33444443222 11 1345789999999999888877765 345788888887332100 0 00
Q ss_pred HH--cCCC---eEEEEc---cCCCCcccccCCCcEeEEEEeCC---ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 188 AK--KRTN---VIPIIE---DARHPAKYRMLVGMVDVIFSDVA---QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 188 a~--~~~n---I~~~~~---D~~~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
+. ...+ +..... |....... .-.||+|++.-. ...|..+..+....+++++|.+++.-+
T Consensus 166 ~~~~~~e~~~~~~i~~s~l~dg~~~~t~---~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 166 AGVEEKENHKVDEILNSLLSDGVFNHTE---RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred hhhhhhhcccceeccccccccchhhhcc---ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence 00 0000 111111 21100000 026788876443 333444424467788999998888653
No 326
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.47 E-value=2.4 Score=39.57 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=54.2
Q ss_pred CCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeC---ChHHHHHHHHHHHcCCCeEEEEccCCCCccc-ccCCCcEe
Q 021911 141 IKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEF---SHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLVGMVD 215 (305)
Q Consensus 141 ~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~---s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-~~~~~~fD 215 (305)
+.++.+||-+|+|+ |..+..+|+..+ .+|++++. ++. -++.+++. .+..+ |..+.... ......+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~----~~~~~~~~-Ga~~v--~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDP----KADIVEEL-GATYV--NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHH----HHHHHHHc-CCEEe--cCCccchhhhhhcCCCC
Confidence 46789999998753 445566667654 37999986 452 23333332 22222 21111000 01124689
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+||-....+. .+. .+.+.|+++|++++.
T Consensus 241 ~vid~~g~~~---~~~-~~~~~l~~~G~~v~~ 268 (355)
T cd08230 241 LIIEATGVPP---LAF-EALPALAPNGVVILF 268 (355)
T ss_pred EEEECcCCHH---HHH-HHHHHccCCcEEEEE
Confidence 9987665443 333 667899999998764
No 327
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.34 E-value=3.2 Score=41.60 Aligned_cols=96 Identities=9% Similarity=0.073 Sum_probs=62.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~ 222 (305)
.+|+= ||.|..+.++++.+.. ...|+.+|.++ +..+.+++ .....+++|+++..... ...+.+|.|++..+
T Consensus 418 ~hiiI--~G~G~~G~~la~~L~~~g~~vvvId~d~----~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALL--VGYGRVGSLLGEKLLAAGIPLVVIETSR----TRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEE--ECCChHHHHHHHHHHHCCCCEEEEECCH----HHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 45555 4556788889987643 34799999999 44444544 46889999999875432 12468898888777
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+....+...+ +.+.|.-+++...
T Consensus 491 ~~~~~~~iv~~~-~~~~~~~~iiar~ 515 (558)
T PRK10669 491 NGYEAGEIVASA-REKRPDIEIIARA 515 (558)
T ss_pred ChHHHHHHHHHH-HHHCCCCeEEEEE
Confidence 655544343243 4456766666544
No 328
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.18 E-value=1.3 Score=36.47 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC----CCeEEEEccCCCCc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPA 205 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~----~nI~~~~~D~~~~~ 205 (305)
.-.+..+.+|||+|.|..+...++.. ....++||+++..+.... ...-+ ....|.--|+...+
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysr-l~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSR-LHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHH-HHHHHHhcccchhhhhhhhhhcc
Confidence 34566799999999999999988872 346789999984432211 11111 34556666665443
No 329
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.13 E-value=0.7 Score=44.48 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=41.9
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA 201 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~ 201 (305)
-.|||+|+|+|.++...+... .-.|+|+|+-.+++.-+.+...++ ++|.+|..-.
T Consensus 68 v~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 469999999998888877763 347999999987777777777666 5677665433
No 330
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.71 E-value=1.5 Score=38.94 Aligned_cols=85 Identities=11% Similarity=-0.027 Sum_probs=47.2
Q ss_pred CCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC----CeEEEEc-cCCCCccc-ccCCCcEe
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----NVIPIIE-DARHPAKY-RMLVGMVD 215 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~----nI~~~~~-D~~~~~~~-~~~~~~fD 215 (305)
.++.++||+|.|.-..--.+-.+. -....++.|+++.++..+..+...++ .|+.... |-....+. --..+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 467799999887533221111110 12367788999977766665555553 3444432 22111111 01246899
Q ss_pred EEEEeCCChhHH
Q 021911 216 VIFSDVAQPDQA 227 (305)
Q Consensus 216 ~V~~d~~~~~~~ 227 (305)
+++||+|..+..
T Consensus 156 ~tlCNPPFh~s~ 167 (292)
T COG3129 156 ATLCNPPFHDSA 167 (292)
T ss_pred eEecCCCcchhH
Confidence 999999954433
No 331
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.59 E-value=3.2 Score=38.46 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 139 IWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..++++.+||-.|+| .|..+..+|+..+ .+|++++.++.. ++.+++.. ...+ .|..+.. ...+|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~----~~~a~~~G-a~~v-i~~~~~~-----~~~~d~~ 227 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAA----RRLALALG-AASA-GGAYDTP-----PEPLDAA 227 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHH----HHHHHHhC-Ccee-ccccccC-----cccceEE
Confidence 367889999999874 2334455666654 479999998843 34444431 1111 1111111 2357876
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+.....+ ..+. .+.+.|+++|++++.
T Consensus 228 i~~~~~~---~~~~-~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 228 ILFAPAG---GLVP-PALEALDRGGVLAVA 253 (329)
T ss_pred EECCCcH---HHHH-HHHHhhCCCcEEEEE
Confidence 6533333 2455 777899999999874
No 332
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.29 E-value=1.2 Score=42.01 Aligned_cols=54 Identities=22% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhh---CC----CcEEEEEeCChHH
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIV---GP----NGVVYAVEFSHRS 180 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~---~~----~~~V~avD~s~~~ 180 (305)
.++..++..++++..+..-.++|+|+|.|.+...++..+ .| ..+++-||+|++-
T Consensus 61 lla~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 61 LLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 445555566666555556789999999999999988765 22 4588999999844
No 333
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.27 E-value=1.4 Score=41.46 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCC-CCc--ccccC-CCcEeE
Q 021911 142 KPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR-HPA--KYRML-VGMVDV 216 (305)
Q Consensus 142 ~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~-~~~--~~~~~-~~~fD~ 216 (305)
.++.+|+=+|||+ |.++..+++.++ ..+|+++|.++ +-++.|++.-....+.-... ... ..... ...+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~----~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSP----ERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCH----HHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCE
Confidence 4455999999997 555667777764 56899999999 44555555311111111111 100 00011 136999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
||-....+. .+. .+.++++++|++++.-
T Consensus 242 vie~~G~~~---~~~-~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVGSPP---ALD-QALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCCCHH---HHH-HHHHHhcCCCEEEEEe
Confidence 997666332 444 7778999999998864
No 334
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.85 E-value=4 Score=36.67 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=50.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc------CCCcEeEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM------LVGMVDVI 217 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~------~~~~fD~V 217 (305)
..+|-.|+ +....++++.+....+|+.++.++..+.++.+..+.. .++.++.+|+.+...... ....+|+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 35565564 4788999988765568999998876555555444432 468888999987643211 12468999
Q ss_pred EEeCC
Q 021911 218 FSDVA 222 (305)
Q Consensus 218 ~~d~~ 222 (305)
+.++.
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 98765
No 335
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.42 E-value=4 Score=41.39 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=65.4
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA 222 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~~ 222 (305)
.+|+= ||-|.++..+++.+. ....++.+|.+++. ++.+++ .....+.+|+++..... ......|+|++...
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~----v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISA----VNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHH----HHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 45555 566778888887653 33479999999944 444443 35778999999876432 12458899998888
Q ss_pred ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.++....+. ...+.+.|.-+++...
T Consensus 474 d~~~n~~i~-~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 474 EPEDTMKIV-ELCQQHFPHLHILARA 498 (601)
T ss_pred CHHHHHHHH-HHHHHHCCCCeEEEEe
Confidence 776665555 4455677887777665
No 336
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.38 E-value=1.3 Score=41.03 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccc------ccC
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY------RML 210 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~------~~~ 210 (305)
..+++++||-+|||| |..+...|+.++ ...|+.+|+++ .-++.|++- +.+....... .+... .+-
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~----~Rle~Ak~~Ga~~~~~~~~~~-~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVA----NRLELAKKFGATVTDPSSHKS-SPQELAELVEKALG 239 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCH----HHHHHHHHhCCeEEeeccccc-cHHHHHHHHHhhcc
Confidence 568899999999997 556777777775 56899999999 445566653 2222221111 11111 111
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+|++|-..-. ...+. .+...|+.+|++++.-
T Consensus 240 ~~~~d~~~dCsG~---~~~~~-aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA---EVTIR-AAIKATRSGGTVVLVG 273 (354)
T ss_pred ccCCCeEEEccCc---hHHHH-HHHHHhccCCEEEEec
Confidence 2357888753332 22222 4557899999987764
No 337
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.27 E-value=4.5 Score=39.07 Aligned_cols=96 Identities=11% Similarity=0.209 Sum_probs=60.3
Q ss_pred EEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-CCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~d~~~ 223 (305)
+|+=+|+ |..+.++++.+.. ...|+.+|.++.. ++.+++...+.++..|+++....... ...+|.|++..+.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~----~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEER----LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHH----HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 5666555 8899999987643 3589999999843 33333334678888998775433222 4679999887765
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 224 PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+....+. ...+.+.|.-.++..+
T Consensus 76 ~~~n~~~~-~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 76 DETNMVAC-QIAKSLFGAPTTIARV 99 (453)
T ss_pred hHHHHHHH-HHHHHhcCCCeEEEEE
Confidence 54444444 3444454444555544
No 338
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.15 E-value=3.7 Score=37.09 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhC----CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK 206 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~----~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~ 206 (305)
.+.+...++|+|||.|.++.+++..+. +...++.||-...+. .+=...... +.++-+..|+.++..
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccch
Confidence 346778999999999999999999873 345789999853221 111111122 357778888877753
No 339
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.14 E-value=1.5 Score=41.06 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=53.8
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCc--c-cc--cCCCc
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA--K-YR--MLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~--~-~~--~~~~~ 213 (305)
.++++++||-.|||+ |..+..+|+..+ ...|+++|.++.. ++.+++..--.++ |..... . .. .....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~----~~~~~~~Ga~~~i--~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRK----LEWAREFGATHTV--NSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHH----HHHHHHcCCceEE--cCCCcCHHHHHHHHhCCCC
Confidence 567899999997642 334555666653 2259999998843 3334332111111 111111 0 00 01135
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+-....+. .+. .+...|+++|++++.
T Consensus 246 ~d~vid~~g~~~---~~~-~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVIDAVGRPE---TYK-QAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEEECCCCHH---HHH-HHHHHhccCCEEEEE
Confidence 898885444332 333 566799999999875
No 340
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.11 E-value=3.7 Score=38.59 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc-cCCCcEeE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR-MLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~-~~~~~fD~ 216 (305)
.++++++||-+|+|+ |..+..+|+..+ ...|+++|.++.. ++.+++..--.++..+-.++.. .. .....+|+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r----~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDK----LALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHH----HHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 577889999988642 334455566543 2269999999843 3344332111111111111100 00 11236899
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
||-....+. .+. .+.+.|+++|++++.
T Consensus 263 vid~~G~~~---~~~-~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEMAGSVP---ALE-TAYEITRRGGTTVTA 289 (371)
T ss_pred EEECCCChH---HHH-HHHHHHhcCCEEEEE
Confidence 986554432 233 566789999998874
No 341
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.03 E-value=2.1 Score=39.96 Aligned_cols=98 Identities=27% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEecCC--CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCC---CeEEEEccCCCCcccccCCCcE
Q 021911 140 WIKPGARVLYLGAAS--GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~--G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~---nI~~~~~D~~~~~~~~~~~~~f 214 (305)
.++++++||-.|++. |.++.+||+.++- +++++--+++. .+.+++.- -|.+...|+.+..........|
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k----~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEK----LELLKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHH----HHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 578899999999654 4578888888642 66666666522 22444331 1222233332221111112369
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+|+-.+-..... ++...|+++|+++..-
T Consensus 213 Dvv~D~vG~~~~~-----~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLDTVGGDTFA-----ASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEECCCHHHHH-----HHHHHhccCCEEEEEe
Confidence 9999666544444 3446899999998864
No 342
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.87 E-value=4.1 Score=41.51 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=63.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc-cCCCcEeEEEEeC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDV 221 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~-~~~~~fD~V~~d~ 221 (305)
..+|+=+|| |.+...+++.+.. .-.++.+|.++.+ .+.+++ .....+.+|+++++... ...+.+|+|++..
T Consensus 400 ~~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~----v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 400 QPRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDH----IETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred cCcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHH----HHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 356777665 5677777776543 3479999999954 444433 35678999999886442 1245889999888
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..++....+. ...+.+.|.-.++..+
T Consensus 473 ~d~~~n~~i~-~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 DDPQTSLQLV-ELVKEHFPHLQIIARA 498 (621)
T ss_pred CCHHHHHHHH-HHHHHhCCCCeEEEEE
Confidence 7766555555 4444556765655543
No 343
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.83 E-value=2.9 Score=34.62 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=57.6
Q ss_pred CCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHH
Q 021911 153 ASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 153 G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
|.|.....+|..+- ....|+..|.++...+++ .+. .++. ..+..+. ....|+|++.++...+.+.+.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~----~~~-g~~~-~~s~~e~------~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL----AEA-GAEV-ADSPAEA------AEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH----HHT-TEEE-ESSHHHH------HHHBSEEEE-SSSHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccchhhhhhh----HHh-hhhh-hhhhhhH------hhcccceEeecccchhhhhhh
Confidence 34677888877652 345899999998443333 222 2222 2222221 245699999999887776555
Q ss_pred HH--HhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeE
Q 021911 232 LN--ASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFE 279 (305)
Q Consensus 232 ~~--a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e 279 (305)
.. +...|++|-.++-.+ +..+... .+..+.+.+.|...++
T Consensus 76 ~~~~i~~~l~~g~iiid~s-------T~~p~~~-~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMS-------TISPETS-RELAERLAAKGVRYVD 117 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-S-------S--HHHH-HHHHHHHHHTTEEEEE
T ss_pred hhhHHhhccccceEEEecC-------Ccchhhh-hhhhhhhhhccceeee
Confidence 35 678888875554432 2222222 2233555667765554
No 344
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=86.64 E-value=1.9 Score=41.02 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=46.2
Q ss_pred EEEEecCCCccHHHHHhhhCCCc---EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 147 VLYLGAASGTTVSHVSDIVGPNG---VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~~---~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
||=+|| |.....+++.+-... +|+..|.+...++.+.+.. ...++.+++.|+.+......+....|+|+...+.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 567787 787777776653322 7899999985544443332 3368999999998876543334566999987764
Q ss_pred h
Q 021911 224 P 224 (305)
Q Consensus 224 ~ 224 (305)
.
T Consensus 78 ~ 78 (386)
T PF03435_consen 78 F 78 (386)
T ss_dssp G
T ss_pred c
Confidence 3
No 345
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=86.63 E-value=19 Score=32.56 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEecCCCc---c-HHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGAASGT---T-VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~---~-t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD 215 (305)
..+.+++||-+|||+=- - +..|.+.+.....++-.|+.+ ... +.-..+..|.+... .+.+||
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d--------~vS--Da~~~~~~Dc~t~~----~~~k~D 123 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD--------YVS--DADQSIVGDCRTYM----PPDKFD 123 (299)
T ss_dssp ---TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B---SSSEEEES-GGGEE----ESS-EE
T ss_pred eeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh--------hcc--ccCCceeccccccC----CCCccc
Confidence 45678999999987532 1 334444454445566777765 122 22345677876654 357999
Q ss_pred EEEEeCCC-------------hhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCcEeEEee
Q 021911 216 VIFSDVAQ-------------PDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVT 282 (305)
Q Consensus 216 ~V~~d~~~-------------~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~~~e~~~ 282 (305)
+||+|+-. ..-..-+..-+...|+-||.+++-+- +... ..++.+|.+. |.-.+.+.
T Consensus 124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT-------E~Sw---~~~Lyel~~~-F~~wt~Fc 192 (299)
T PF06460_consen 124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT-------EHSW---NAQLYELMGY-FSWWTCFC 192 (299)
T ss_dssp EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE--------SSS-----HHHHHHHTT-EEEEEEEE
T ss_pred EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee-------cccc---cHHHHHHHhh-cccEEEEe
Confidence 99998861 11112222245578999999999771 1111 2334444444 66666553
Q ss_pred cC-CCCCceEEEEEEEcCC
Q 021911 283 LE-PFERDHACVVGGYRMP 300 (305)
Q Consensus 283 l~-p~~~~~~~vv~~~~~~ 300 (305)
.. -....++++++..--.
T Consensus 193 T~VNtSSSEaFLigiNYLg 211 (299)
T PF06460_consen 193 TAVNTSSSEAFLIGINYLG 211 (299)
T ss_dssp EGGGTTSS-EEEEEEEE-S
T ss_pred cccCccccceeEEeeeccC
Confidence 32 2335667777665433
No 346
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.62 E-value=3.3 Score=37.30 Aligned_cols=98 Identities=21% Similarity=0.152 Sum_probs=52.8
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-cc-c-CCCcEe
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-YR-M-LVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~~-~-~~~~fD 215 (305)
...++++||-+|+|+ |..+..+|+..+ ...|+++|.++.. ++.+++.. +..+. |...... .. . ....+|
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r----~~~a~~~G-a~~~i-~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDR----RELALSFG-ATALA-EPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH----HHHHHHcC-CcEec-CchhhHHHHHHHhCCCCCC
Confidence 455889999997642 224445555543 2248899988743 33444321 11111 1111110 00 0 123589
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+-....+. .+. .+.+.|+++|++++.-
T Consensus 190 ~vid~~G~~~---~~~-~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGATA---AVR-ACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCChH---HHH-HHHHHhcCCCEEEEec
Confidence 9986554433 233 5567999999998753
No 347
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=86.62 E-value=1.4 Score=41.74 Aligned_cols=38 Identities=29% Similarity=0.183 Sum_probs=31.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~ 180 (305)
..+-..|+|+|+|.|.++..++-.++ -.|+|||-|+..
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~ 188 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRL 188 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHH
Confidence 34567999999999999999997754 589999999644
No 348
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=86.54 E-value=2.2 Score=35.94 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=39.9
Q ss_pred EeEEEEeCCCh-----------------hHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHHHHCCCc
Q 021911 214 VDVIFSDVAQP-----------------DQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFK 276 (305)
Q Consensus 214 fD~V~~d~~~~-----------------~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l~~~Gf~ 276 (305)
||+|++|+|.+ ...++..+-+.+++.+++.|++-+ .+...... ..+.|++.||+
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWv--------Tn~~~~~~-~~~l~~~WGf~ 71 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWV--------TNSQLPEA-KLELFPAWGFE 71 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEe--------ccchhhHH-HHHHHHhCCCE
Confidence 79999999922 345666667888999988888865 11222211 35667889999
Q ss_pred EeEEe
Q 021911 277 PFEQV 281 (305)
Q Consensus 277 ~~e~~ 281 (305)
..+..
T Consensus 72 ~~~~~ 76 (176)
T PF05063_consen 72 YVTEW 76 (176)
T ss_pred EEEEE
Confidence 87754
No 349
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.51 E-value=5.8 Score=33.69 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=64.7
Q ss_pred hhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC
Q 021911 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (305)
Q Consensus 125 ~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~ 204 (305)
..+|++..+. ....+.+|--+-|=+=.+-.-.-+.--|.-+|+-+|++.+. ++ . --+|+.-|...+
T Consensus 60 a~~La~e~v~-----~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--e~--y-----g~eFvfYDyN~p 125 (217)
T KOG3350|consen 60 ARKLAAERVE-----ASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--EL--Y-----GTEFVFYDYNCP 125 (217)
T ss_pred HHHHHHHHHh-----hcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--Hh--c-----cceeEEeccCCC
Confidence 4566666653 33455667666654322222222222246689999999844 11 1 146777887665
Q ss_pred cccc-cCCCcEeEEEEeCCChh---HHHHHHHHHhccCCCCcEEEEEE
Q 021911 205 AKYR-MLVGMVDVIFSDVAQPD---QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 205 ~~~~-~~~~~fD~V~~d~~~~~---~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .+...||+|++|+|.-. +...-. .+..++++.-++++.|
T Consensus 126 ~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~-tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 126 LDLPDELKAHFDIIVADPPFLSEECLAKTSE-TIKRLQRNQKKVILCT 172 (217)
T ss_pred CCCHHHHHhcccEEEeCCccccchhhhhhHH-HHHHHhcCCceEEEec
Confidence 4321 23468999999999433 233333 5678888888888876
No 350
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.36 E-value=1.9 Score=39.98 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=65.9
Q ss_pred hhhHHHHHHHc-------cccccCCCCCCEEEEEec-CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE
Q 021911 124 FRSKLAAAVLG-------GVDNIWIKPGARVLYLGA-ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI 195 (305)
Q Consensus 124 ~~s~l~a~ll~-------~l~~~~~~~g~~VLDlG~-G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~ 195 (305)
..+..+|.||- .|......|+.+|--+|. |-|.++..+|+.++ -+|+++|-+.+..+++++..-..
T Consensus 155 ~pl~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGAd---- 228 (360)
T KOG0023|consen 155 LPLASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGAD---- 228 (360)
T ss_pred CChhhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCcc----
Confidence 44555666552 244456779998888875 47889999999986 48999999975555555543321
Q ss_pred EEEccCC-CCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 196 PIIEDAR-HPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 196 ~~~~D~~-~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+ |++ +.+.........|.++-.++.- -...+. .+..+||++|++++.-
T Consensus 229 ~fv-~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~-~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 229 VFV-DSTEDPDIMKAIMKTTDGGIDTVSNL-AEHALE-PLLGLLKVNGTLVLVG 279 (360)
T ss_pred eeE-EecCCHHHHHHHHHhhcCcceeeeec-cccchH-HHHHHhhcCCEEEEEe
Confidence 111 111 1111111123344443322211 111222 4557999999999864
No 351
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=86.01 E-value=0.93 Score=37.23 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-ccCCCcEeEEEEeCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLVGMVDVIFSDVA 222 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-~~~~~~fD~V~~d~~ 222 (305)
..-|||+|=|+|.+--||.+.+ |...|+++|-.-..--+++- +.-.+++.|+.+..+. .......-++.+|.-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~hp~~~P-----~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G 102 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACHPSSTP-----PEEDLILGDIRETLPALARFGAGAALAHADIG 102 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-S-EEEEEE---
T ss_pred CCceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccCCCCCC-----chHheeeccHHHHhHHHHhcCCceEEEEeecC
Confidence 3689999999999999999998 67799999964210001111 2234677777554322 112245556666665
Q ss_pred Chh------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 223 QPD------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 223 ~~~------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+ ....+..-+..+|.|||.++-..
T Consensus 103 ~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 103 TGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp -S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 221 23334445778999999887654
No 352
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.99 E-value=4.3 Score=35.74 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=58.8
Q ss_pred EEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHH-HHcCCCeEEEEccCCCCcccccC-CCcEeEEEEeCC
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVA 222 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~-a~~~~nI~~~~~D~~~~~~~~~~-~~~fD~V~~d~~ 222 (305)
+++-+|| |.+..++|+.+-.. -.|+.+|.++. ..+. +........++.|+++....... ...+|++++...
T Consensus 2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~----~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEE----RVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHH----HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 4566666 56888888776444 38999999993 3333 33334678899999887654322 468999998887
Q ss_pred ChhHHHHHHHHHhccC
Q 021911 223 QPDQARILALNASYFL 238 (305)
Q Consensus 223 ~~~~~~~l~~~a~~~L 238 (305)
...+.-++..-+.+.+
T Consensus 76 ~d~~N~i~~~la~~~~ 91 (225)
T COG0569 76 NDEVNSVLALLALKEF 91 (225)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 7666666664444444
No 353
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.50 E-value=8.6 Score=33.45 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=58.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCCh-HHHHHHHHHHHc-CCCeEEEEccCCCCccccc-------CCCc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH-RSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~-~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
+.+||-.|+ +|....++++.+- ...+|++++.+. ...+.+.+..+. ..++.++..|+++...... ....
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 468888885 4567777776542 334788876653 222333322222 2467888999987653211 1136
Q ss_pred EeEEEEeCCCh----------------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVAQP----------------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~~~----------------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|+.++... -...++. .+...++.++.+++..
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~-~~~~~~~~~~~iv~is 134 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLAR-AALPLMPAGSRVVFVT 134 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHH-HHHhhccCCceEEEEe
Confidence 89888765311 1334444 5666666667776654
No 354
>PRK08324 short chain dehydrogenase; Validated
Probab=85.37 E-value=3.6 Score=42.38 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
++++||-.|+. |....+++..+- ...+|+.+|.++.....+.+......++.++.+|+++...... ....+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46788888864 456666665442 2358999999986554444433322478889999987643211 12368
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+||.+..
T Consensus 500 DvvI~~AG 507 (681)
T PRK08324 500 DIVVSNAG 507 (681)
T ss_pred CEEEECCC
Confidence 99998665
No 355
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=85.22 E-value=4.1 Score=36.53 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=57.9
Q ss_pred CCEEEEEecCCCccHHHHHhhh---C-CCcEEEEEeCC-------h---------------HHHHHHHHHHHcC------
Q 021911 144 GARVLYLGAASGTTVSHVSDIV---G-PNGVVYAVEFS-------H---------------RSGRDLVNMAKKR------ 191 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~---~-~~~~V~avD~s-------~---------------~~~~~l~~~a~~~------ 191 (305)
...|+|+||-.|..+..++..+ + +..+|+++|.= . ......++..+++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 4689999999998776665443 2 34578988741 0 0000112222222
Q ss_pred --CCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 192 --TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 192 --~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+++++..++.+..+. .....+-++.+|.-..+........++..|.|||++++-.
T Consensus 155 ~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPD-APIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp SSTTEEEEES-HHHHCCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CcccEEEECCcchhhhcc-CCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 4799999988544322 2345777888888766655554448999999999999865
No 356
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.80 E-value=3.6 Score=38.32 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=29.5
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHH
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS 180 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~ 180 (305)
..++++.+||-+|||+ |..+..+|...+ .+|+++|.++..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~ 202 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEK 202 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHH
Confidence 3577899999999854 455566677654 379999999844
No 357
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=84.63 E-value=1 Score=34.97 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHHHccccccCCC-CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCCh
Q 021911 127 KLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~-~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~ 178 (305)
.+++.++...+..... +-..-+|||||+|.++-.|... +- .=+++|+-.
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E-Gy--~G~GiD~R~ 90 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE-GY--PGWGIDARR 90 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC-CC--Ccccccccc
Confidence 4555665544444333 4568999999999887777665 22 347888754
No 358
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.57 E-value=0.85 Score=35.51 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=25.0
Q ss_pred cEeEEEEeCCC---------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ---------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~---------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.||+|+|-... .-....+. .++..|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~-~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFR-RIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHH-HHHHhhCCCCEEEEeC
Confidence 48999985551 22445565 8999999999999975
No 359
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=84.57 E-value=3 Score=38.94 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE-EEEccCC-CCcc-c-ccCCCc
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI-PIIEDAR-HPAK-Y-RMLVGM 213 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~-~~~~D~~-~~~~-~-~~~~~~ 213 (305)
.++++++||-.|+ +.|..+..+|+..+ .+|++++.++.. .+.+++.-.+. .+..+-. .... . ......
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k----~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQK----VDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHH----HHHHHHhcCCCEEEECCCcccHHHHHHHHCCCC
Confidence 5778999999987 36667788888864 479999988733 33332111111 1111100 1110 0 011236
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+-.... ..+. .+.+.|+++|++++.
T Consensus 229 vD~v~d~vG~----~~~~-~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDNVGG----DMLD-AALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEECCCH----HHHH-HHHHHhccCCEEEEE
Confidence 8999854442 2344 677899999999864
No 360
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=84.50 E-value=2.3 Score=35.10 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=52.3
Q ss_pred EEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHHcC---------CCeEEEEccCCCCcccccCCCcEeE
Q 021911 147 VLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKR---------TNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~~~---------~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
|.-+|+ |.+...+|..+... .+|+-...++..++.+.+.-... .++. +..|..+ .....|+
T Consensus 2 I~ViGa--G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~------a~~~ad~ 72 (157)
T PF01210_consen 2 IAVIGA--GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTDLEE------ALEDADI 72 (157)
T ss_dssp EEEESS--SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESSHHH------HHTT-SE
T ss_pred EEEECc--CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccCHHH------HhCcccE
Confidence 444455 55555555544333 37888888885554444332211 1332 2222211 1357799
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
|+...|......++. ++..+|+++=.+++.++
T Consensus 73 IiiavPs~~~~~~~~-~l~~~l~~~~~ii~~~K 104 (157)
T PF01210_consen 73 IIIAVPSQAHREVLE-QLAPYLKKGQIIISATK 104 (157)
T ss_dssp EEE-S-GGGHHHHHH-HHTTTSHTT-EEEETS-
T ss_pred EEecccHHHHHHHHH-HHhhccCCCCEEEEecC
Confidence 999999888888888 99999988866665543
No 361
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.29 E-value=5.1 Score=35.61 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=49.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
++.+||-.|+ +|....++++.+- ...+|+.++.++.....+.+..... .++.++..|+++...... ....
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4678888885 5566776665442 3458999998876555544333332 467788899987543211 1246
Q ss_pred EeEEEEeC
Q 021911 214 VDVIFSDV 221 (305)
Q Consensus 214 fD~V~~d~ 221 (305)
+|+|+.+.
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 79998765
No 362
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.23 E-value=10 Score=29.84 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=56.6
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
.+|+++|.|-=......... ..+.|+++|+.+. .+. ..+.++.-|++++... .....|+|.+--|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e--~g~dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~--iY~~A~lIYSiRppp 81 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAE--RGFDVLATDINEK-------TAP--EGLRFVVDDITNPNIS--IYEGADLIYSIRPPP 81 (129)
T ss_pred CcEEEEccchHHHHHHHHHH--cCCcEEEEecccc-------cCc--ccceEEEccCCCccHH--HhhCccceeecCCCH
Confidence 49999998653322222222 2368999999982 222 5788999999987532 246789999876766
Q ss_pred hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 225 DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+....+. .+.+.++.. +++..
T Consensus 82 El~~~il-dva~aVga~--l~I~p 102 (129)
T COG1255 82 ELQSAIL-DVAKAVGAP--LYIKP 102 (129)
T ss_pred HHHHHHH-HHHHhhCCC--EEEEe
Confidence 6555555 555555553 55543
No 363
>PRK05872 short chain dehydrogenase; Provisional
Probab=84.23 E-value=7.9 Score=35.15 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=49.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
.+.+||-.|+.. ....++++.+. ...+|+.++.++..++++.+.......+..+.+|+++...... ....+
T Consensus 8 ~gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (296)
T PRK05872 8 AGKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI 86 (296)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467888888654 56666666542 3358999998886555554444323456666789887643211 12578
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.+..
T Consensus 87 d~vI~nAG 94 (296)
T PRK05872 87 DVVVANAG 94 (296)
T ss_pred CEEEECCC
Confidence 99998765
No 364
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.14 E-value=1.8 Score=37.13 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=23.3
Q ss_pred EeEEEEeCC-----C-----------------hhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 214 VDVIFSDVA-----Q-----------------PDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 214 fD~V~~d~~-----~-----------------~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+|+|+.|+| . ......+. ++.++|||+|.+++.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLK-ECYRVLKPGGSIFIFI 56 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHH-HHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHH-HHHhhcCCCeeEEEEe
Confidence 588888888 1 12344555 8999999999999986
No 365
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=84.03 E-value=3.2 Score=38.69 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=50.6
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+++||=.|+ +|....++++.+-. ...|++++.++.....+........+++++..|+++..........+|.||..+
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 4678998884 78899999886632 347888877654333333322223568899999987654322234579888644
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
.
T Consensus 88 ~ 88 (353)
T PLN02896 88 A 88 (353)
T ss_pred c
Confidence 3
No 366
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=83.83 E-value=7 Score=35.87 Aligned_cols=97 Identities=25% Similarity=0.291 Sum_probs=52.5
Q ss_pred CCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
++.+||..+|+. |..+..+|+..+. ..|++++.+++.. +.+++..--.++..+-............+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~----~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPL----AVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHH----HHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 788999987654 4456667776532 2688998887433 233322111111111000111100123599998755
Q ss_pred CChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.... .+. .+.+.|+++|+++...
T Consensus 240 g~~~---~~~-~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 GAPA---ALA-SALRVVRPGGTVVQVG 262 (339)
T ss_pred CCHH---HHH-HHHHHHhcCCEEEEEe
Confidence 4322 233 6678999999998653
No 367
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.61 E-value=23 Score=32.59 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCCEEEEEecCCCc---cHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-------ccCCC
Q 021911 143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-------RMLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~---~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-------~~~~~ 212 (305)
.+..||--|+|+|. .++++|++ .+.++.+|+++....+..+..++...++..++|+.+..+. ....+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 37899999999885 44455554 3468888999877777777776545688999999887542 12346
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.|+.
T Consensus 114 ~V~ILVNNAG 123 (300)
T KOG1201|consen 114 DVDILVNNAG 123 (300)
T ss_pred CceEEEeccc
Confidence 8999998776
No 368
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.55 E-value=6.6 Score=34.82 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=53.1
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+.++.+||-.|||. |..+..+|+..+.. .|++++.++... +.+++..-...+ .+... .......+|+|+
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~----~~~~~~g~~~~~-~~~~~---~~~~~~~~d~vl 164 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARR----ELAEALGPADPV-AADTA---DEIGGRGADVVI 164 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHH----HHHHHcCCCccc-cccch---hhhcCCCCCEEE
Confidence 567889999987653 44556667765422 399999887432 333332100000 00000 000124689998
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
....... .+. .+.+.|+++|+++..
T Consensus 165 ~~~~~~~---~~~-~~~~~l~~~g~~~~~ 189 (277)
T cd08255 165 EASGSPS---ALE-TALRLLRDRGRVVLV 189 (277)
T ss_pred EccCChH---HHH-HHHHHhcCCcEEEEE
Confidence 6544332 233 566789999998764
No 369
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.54 E-value=6.8 Score=35.52 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChH-HHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHR-SGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~-~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
.+++||-.|+ ++....+++..+- ...+|+.++.++. ....+.+..+.. .++.++.+|+.+......+ ..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578888886 4456666665542 3457888877642 222332333222 4688899999876532111 13
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+||.++.
T Consensus 124 ~iD~lI~~Ag 133 (290)
T PRK06701 124 RLDILVNNAA 133 (290)
T ss_pred CCCEEEECCc
Confidence 6899886543
No 370
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.27 E-value=14 Score=32.76 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=49.3
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+..+|-.|+++| .....+|..+- ...+|+.++.+++..+.+.+.+++...+.++.+|+.+...... ....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 4678999998873 67777776542 2357888888754322233333332345678899887643211 1257
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 89 ld~lv~nAg 97 (258)
T PRK07533 89 LDFLLHSIA 97 (258)
T ss_pred CCEEEEcCc
Confidence 899987653
No 371
>PRK12939 short chain dehydrogenase; Provisional
Probab=83.17 E-value=8.7 Score=33.32 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
++.+||-.|+ +|....++++.+- ...+|+.++.++.....+.+..+.. .++.++++|+++......+ ...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3578887775 6778888887653 2357888888875555554443332 4688999999876532111 146
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.+..
T Consensus 85 id~vi~~ag 93 (250)
T PRK12939 85 LDGLVNNAG 93 (250)
T ss_pred CCEEEECCC
Confidence 899987654
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.69 E-value=6.5 Score=37.96 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=59.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccc-ccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY-RMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~-~~~~~~fD~V~~d 220 (305)
..+||=+|+ |.++..+++.+.. ...|+.+|.++.. .+.+.+. .++.++.+|+.+...+ ......+|.|++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~----~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPER----AEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 467777666 7788888887643 4589999999943 3333332 4678899999876543 1234688999876
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~ 246 (305)
.+......+.. ...+.+.+. .++.
T Consensus 305 ~~~~~~n~~~~-~~~~~~~~~-~ii~ 328 (453)
T PRK09496 305 TNDDEANILSS-LLAKRLGAK-KVIA 328 (453)
T ss_pred CCCcHHHHHHH-HHHHHhCCC-eEEE
Confidence 66543333333 333445554 4443
No 373
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=82.57 E-value=3.8 Score=37.89 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred ecCchhhHHHHHHHcccc----ccCC----------CCCCEEEEEecCCCccHHHHHhhh-------------------C
Q 021911 120 IWNPFRSKLAAAVLGGVD----NIWI----------KPGARVLYLGAASGTTVSHVSDIV-------------------G 166 (305)
Q Consensus 120 ~~~~~~s~l~a~ll~~l~----~~~~----------~~g~~VLDlG~G~G~~t~~la~~~-------------------~ 166 (305)
.|.|.++--.+.++..|. .+.. ++..+||-||-|.|.-...+|..+ .
T Consensus 49 RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~ 128 (315)
T PF11312_consen 49 RWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSP 128 (315)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCC
Confidence 488877655555443322 1111 123699999999998777777766 0
Q ss_pred CCcEEEEEeCChHH--HHHHHHHHHcC-------------------CCeEEEEccCCCCcccc---cCC-CcEeEEEEeC
Q 021911 167 PNGVVYAVEFSHRS--GRDLVNMAKKR-------------------TNVIPIIEDARHPAKYR---MLV-GMVDVIFSDV 221 (305)
Q Consensus 167 ~~~~V~avD~s~~~--~~~l~~~a~~~-------------------~nI~~~~~D~~~~~~~~---~~~-~~fD~V~~d~ 221 (305)
+...|+.||+.+.. +..+....... -++.|.+.|+....... .+. ...|+|.+-+
T Consensus 129 ~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlF 208 (315)
T PF11312_consen 129 PSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLF 208 (315)
T ss_pred CcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHH
Confidence 12489999998654 12222111111 25678888886664321 001 1234443211
Q ss_pred C--------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 222 A--------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 222 ~--------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. .+.-.+.|. +....++||-.|+|+.
T Consensus 209 TlNELfs~s~~kTt~FLl-~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 209 TLNELFSTSISKTTKFLL-RLTDICPPGSLLLVVD 242 (315)
T ss_pred HHHHHHhcChHHHHHHHH-HHHhhcCCCcEEEEEc
Confidence 1 234445555 8999999999988876
No 374
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.84 E-value=8 Score=41.74 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=50.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhC--CCcE-------------EEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG--PNGV-------------VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~--~~~~-------------V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~ 208 (305)
..+||=|||| ..+..+++.+. +... |+.+|.++...+ +.++..+++..+..|+.+.....
T Consensus 569 ~~rIlVLGAG--~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~---~la~~~~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 569 SQNVLILGAG--RVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK---ETVEGIENAEAVQLDVSDSESLL 643 (1042)
T ss_pred CCcEEEECCC--HHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH---HHHHhcCCCceEEeecCCHHHHH
Confidence 4689999985 44444444331 2222 777799874333 33333357888888887765443
Q ss_pred cCCCcEeEEEEeCCChhHHHHHH
Q 021911 209 MLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 209 ~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
.....+|+|++..|......+..
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAk 666 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAK 666 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHH
Confidence 22346999999888554444333
No 375
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.74 E-value=6 Score=36.41 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=53.8
Q ss_pred cccCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC--Cccc-cc-CC
Q 021911 137 DNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH--PAKY-RM-LV 211 (305)
Q Consensus 137 ~~~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~--~~~~-~~-~~ 211 (305)
....+.++++||-+|+| .|..+..+|+..+. ..|++++.++.. ++.+++.. +..+ .|..+ .... .. ..
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~----~~~~~~~g-a~~~-i~~~~~~~~~~~~~~~~ 229 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPER----LELAKALG-ADFV-INSGQDDVQEIRELTSG 229 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHH----HHHHHHhC-CCEE-EcCCcchHHHHHHHhCC
Confidence 33467789999999763 22244455666542 249999988743 33333221 1111 11111 1000 01 12
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
..+|+||-....+. .+. .+.+.|+++|++++.
T Consensus 230 ~~~d~vid~~g~~~---~~~-~~~~~l~~~G~~v~~ 261 (339)
T cd08239 230 AGADVAIECSGNTA---ARR-LALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCEEEECCCCHH---HHH-HHHHHhhcCCEEEEE
Confidence 36999986555433 222 556789999999865
No 376
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.43 E-value=12 Score=30.28 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=47.9
Q ss_pred EEEEEecCCCccHHHHHhhhCC--CcEEEEEeCC--hHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCCc
Q 021911 146 RVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFS--HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM 213 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~--~~~V~avD~s--~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~~ 213 (305)
+||-.|+. +.....++..+-. ...|+.+.-+ .....++++..+.. .++.++.+|+.+..... .....
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46666765 4455555554422 3477778877 55555565555433 68899999988764321 12368
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|++|.+..
T Consensus 81 ld~li~~ag 89 (167)
T PF00106_consen 81 LDILINNAG 89 (167)
T ss_dssp ESEEEEECS
T ss_pred ccccccccc
Confidence 999998776
No 377
>PRK07904 short chain dehydrogenase; Provisional
Probab=81.26 E-value=4.5 Score=35.80 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=51.1
Q ss_pred CCCCEEEEEecCCCccHHHHHhhh-CC-CcEEEEEeCChHH-HHHHHHHHHcC--CCeEEEEccCCCCccccc------C
Q 021911 142 KPGARVLYLGAASGTTVSHVSDIV-GP-NGVVYAVEFSHRS-GRDLVNMAKKR--TNVIPIIEDARHPAKYRM------L 210 (305)
Q Consensus 142 ~~g~~VLDlG~G~G~~t~~la~~~-~~-~~~V~avD~s~~~-~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~------~ 210 (305)
..+.+||-.|| ++....++++.+ .. ..+|+.++.++.. ..++.+..++. .+++++.+|+.+...... .
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 34568888887 556777777764 22 2589998887653 45555444432 378999999977543110 1
Q ss_pred CCcEeEEEEeCC
Q 021911 211 VGMVDVIFSDVA 222 (305)
Q Consensus 211 ~~~fD~V~~d~~ 222 (305)
...+|+++.+..
T Consensus 85 ~g~id~li~~ag 96 (253)
T PRK07904 85 GGDVDVAIVAFG 96 (253)
T ss_pred cCCCCEEEEeee
Confidence 147898887554
No 378
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=81.24 E-value=5.7 Score=40.00 Aligned_cols=82 Identities=18% Similarity=0.100 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHc----------CCCeEEEEccCCCCcccc
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK----------RTNVIPIIEDARHPAKYR 208 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~----------~~nI~~~~~D~~~~~~~~ 208 (305)
+.+.+..||-+|+ +|....++++.+ ....+|++++.+......+.+.... ..++.++.+|+.+.....
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 5567778887775 577788877665 2345799998887555444433221 135889999998765432
Q ss_pred cCCCcEeEEEEeCC
Q 021911 209 MLVGMVDVIFSDVA 222 (305)
Q Consensus 209 ~~~~~fD~V~~d~~ 222 (305)
.....+|+||+++.
T Consensus 155 ~aLggiDiVVn~AG 168 (576)
T PLN03209 155 PALGNASVVICCIG 168 (576)
T ss_pred HHhcCCCEEEEccc
Confidence 23457899988764
No 379
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=81.06 E-value=5 Score=35.44 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=49.2
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEeE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD~ 216 (305)
++||-.|++. .....+++.+. ...+|+.++.++..+.++.+..+...++.++.+|+++...... ....+|+
T Consensus 1 m~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 1 MNVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred CeEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 3678888654 46666665542 3458899998876655555554444568889999987643211 1257899
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+.++.
T Consensus 80 li~naG 85 (259)
T PRK08340 80 LVWNAG 85 (259)
T ss_pred EEECCC
Confidence 987653
No 380
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.05 E-value=4.3 Score=40.30 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCCEEEEEecCCC-ccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-----------Cc-c--
Q 021911 142 KPGARVLYLGAASG-TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-----------PA-K-- 206 (305)
Q Consensus 142 ~~g~~VLDlG~G~G-~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-----------~~-~-- 206 (305)
.++.+||-+|||.= ..+..++..++ ..|+++|.++.. ++.++.. ..+++..|..+ .. +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~r----le~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEV----KEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHH----HHHHHHc-CCeEEeccccccccccccceeecCHHHH
Confidence 35689999999853 45556666655 469999999843 3444432 23333333211 00 0
Q ss_pred ------cccCCCcEeEEEEeCCChhH--HHHHHHHHhccCCCCcEEE
Q 021911 207 ------YRMLVGMVDVIFSDVAQPDQ--ARILALNASYFLKAGGHFV 245 (305)
Q Consensus 207 ------~~~~~~~fD~V~~d~~~~~~--~~~l~~~a~~~LkpGG~lv 245 (305)
.......+|+||..+..|-. ..++..++.+.+|||+.++
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00113579999987732211 1233336678999998776
No 381
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.02 E-value=7.8 Score=36.37 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
++++++||-.|+| -|..+..+|+..+ .+|++++.++... .+.+++. .+..+. |..+..........+|+||-
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~---~~~~~~~-Ga~~vi-~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKE---DEAINRL-GADSFL-VSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchh---hhHHHhC-CCcEEE-cCCCHHHHHhhcCCCCEEEE
Confidence 4678899998764 2335556666654 4688888876322 2222222 222111 11111111111135899985
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
....+. .+. .+.+.|+++|+++..
T Consensus 254 ~~g~~~---~~~-~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 TVSAVH---ALG-PLLGLLKVNGKLITL 277 (360)
T ss_pred CCCCHH---HHH-HHHHHhcCCcEEEEe
Confidence 444332 333 566899999999865
No 382
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.96 E-value=4.5 Score=37.30 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCCC--CEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-ccCCCc
Q 021911 140 WIKPG--ARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RMLVGM 213 (305)
Q Consensus 140 ~~~~g--~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~~~~~ 213 (305)
.++++ ++||-.|+ +.|..+..+|+..+. .+|++++.++.....+.+..-. +. ++..+-.++.. . ......
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~lGa-~~--vi~~~~~~~~~~i~~~~~~g 224 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSELGF-DA--AINYKTDNVAERLRELCPEG 224 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhcCC-cE--EEECCCCCHHHHHHHHCCCC
Confidence 35555 89999886 456677778887541 2699999887433222221111 11 11111111110 0 011246
Q ss_pred EeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 214 VDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 214 fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+|+-....+. +. .+.+.|+++|+++..
T Consensus 225 vd~vid~~g~~~----~~-~~~~~l~~~G~iv~~ 253 (345)
T cd08293 225 VDVYFDNVGGEI----SD-TVISQMNENSHIILC 253 (345)
T ss_pred ceEEEECCCcHH----HH-HHHHHhccCCEEEEE
Confidence 999985444332 33 566899999999863
No 383
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=80.71 E-value=9.5 Score=35.00 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=40.0
Q ss_pred CcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHHHHHHHH-HHCCCcEeE
Q 021911 212 GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKL-QQDQFKPFE 279 (305)
Q Consensus 212 ~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~~~~~~l-~~~Gf~~~e 279 (305)
+.||+|+.... ....|......+++|++.|++.+...-++-..+....|.+.+.+| +++||++..
T Consensus 221 ~~Fd~ifvs~s---~vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 221 NFFDLIFVSCS---MVHFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred CCCCEEEEhhh---hHhhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 46676664332 233333345578999999999983222334434444566666655 889998864
No 384
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=80.70 E-value=6.1 Score=36.14 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=51.0
Q ss_pred CCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
.++.+||=+||| -|.++..+|+..+ ...|+++|.++.+ ++.+... .. .|..+. ....+|+||-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~r----l~~a~~~---~~--i~~~~~-----~~~g~Dvvid~ 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRR----RDGATGY---EV--LDPEKD-----PRRDYRAIYDA 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHH----HHhhhhc---cc--cChhhc-----cCCCCCEEEEC
Confidence 357789988765 3445666777654 2247778888743 3333321 11 121110 12468999866
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+.. +. .+.++|+++|++++.
T Consensus 208 ~G~~~~---~~-~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 208 SGDPSL---ID-TLVRRLAKGGEIVLA 230 (308)
T ss_pred CCCHHH---HH-HHHHhhhcCcEEEEE
Confidence 655432 23 566799999999875
No 385
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.48 E-value=3.9 Score=37.83 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=48.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCC---cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~---~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+++||-.|+ +|....++++.+-.. ..|++++.++.....+.+... ..++.++.+|+++..........+|+||..
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~-~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP-APCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC-CCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 567887775 688888888765322 478888876533222222221 246889999998876443233468999875
Q ss_pred CC
Q 021911 221 VA 222 (305)
Q Consensus 221 ~~ 222 (305)
+.
T Consensus 82 Ag 83 (324)
T TIGR03589 82 AA 83 (324)
T ss_pred cc
Confidence 44
No 386
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=80.29 E-value=2.4 Score=35.38 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=47.5
Q ss_pred HHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---C--CeEEEEccC
Q 021911 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T--NVIPIIEDA 201 (305)
Q Consensus 127 ~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~--nI~~~~~D~ 201 (305)
+....+...|..+ ...+.+|.=.||+.-..++.-.--+.+.--.+.||.++ .+.- + .|..+.-+.
T Consensus 52 ~~~~~l~~~L~~~-~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np---------~K~G~~~PGt~ipI~~p~~ 121 (160)
T PF08484_consen 52 QSKAELREFLEKL-KAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP---------LKQGKYLPGTHIPIVSPEE 121 (160)
T ss_dssp HHHHHHHHHHHHH-HHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-G---------GGTTEE-TTT--EEEEGGG
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh---------hhcCcccCCCCCeECCHHH
Confidence 3333444433322 23568888888877655543332222333567889988 2221 2 344333222
Q ss_pred CCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 202 RHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
. .....|+|+. +++.-..+++. +...+++.||.|++..
T Consensus 122 l-------~~~~pd~viv-law~y~~EI~~-~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 122 L-------KERKPDYVIV-LAWNYKDEIIE-KLREYLERGGKFIVPL 159 (160)
T ss_dssp ---------SS--SEEEE-S-GGGHHHHHH-HTHHHHHTT-EEEE-S
T ss_pred H-------hhCCCCEEEE-cChhhHHHHHH-HHHHHHhcCCEEEEeC
Confidence 1 2346788876 44455566666 8888999999999864
No 387
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.98 E-value=9.1 Score=33.76 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=49.6
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC------CCcEeE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML------VGMVDV 216 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~------~~~fD~ 216 (305)
+.+||=.|+.. .....++..+ ....+|+.++.++...+++.+......++.++.+|+.+....... ...+|+
T Consensus 5 ~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~ 83 (263)
T PRK09072 5 DKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV 83 (263)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence 46788887654 5666665543 234589999988766555554442235788899999876532110 246799
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+.+..
T Consensus 84 lv~~ag 89 (263)
T PRK09072 84 LINNAG 89 (263)
T ss_pred EEECCC
Confidence 988654
No 388
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=79.90 E-value=17 Score=33.10 Aligned_cols=98 Identities=22% Similarity=0.234 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEE
Q 021911 139 IWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V 217 (305)
..+.++.+||-+||| .|..+..+|+..+ ..|++++.++.. ++.+++. .+..+..+........ ....+|+|
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~----~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDK----RELARKL-GADEVVDSGAELDEQA-AAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHH----HHHHHHh-CCcEEeccCCcchHHh-ccCCCCEE
Confidence 356788999999775 4445555666644 478999888743 3333222 1211111111000000 12468999
Q ss_pred EEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 218 FSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 218 ~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+....... .+. .+.+.|+++|+++...
T Consensus 230 i~~~~~~~---~~~-~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVVSGA---AAE-AALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCCcHH---HHH-HHHHhcccCCEEEEEC
Confidence 86544332 333 6678999999988753
No 389
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.50 E-value=32 Score=28.24 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCC
Q 021911 153 ASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (305)
Q Consensus 153 G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~ 222 (305)
++|.....+++.+ ....+|+++--++....+ ..+++++..|+.+..........+|+|++..+
T Consensus 6 atG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 6 ATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp TTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred CCChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 6788888888765 234689999877743222 57899999999887654333457899998766
No 390
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.10 E-value=5.9 Score=34.77 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCCCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCC
Q 021911 141 IKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVG 212 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~ 212 (305)
.-++.+||-.|+. |....++++.+- ...+|+.++.++.....+.+.... .++.++..|+.+...... ...
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-AKVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3466899998875 667777776542 345799999887554444333322 267888999987653211 114
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.+..
T Consensus 86 ~~d~vi~~ag 95 (264)
T PRK12829 86 GLDVLVNNAG 95 (264)
T ss_pred CCCEEEECCC
Confidence 6899997554
No 391
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.10 E-value=11 Score=34.56 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=48.7
Q ss_pred CEEEEEecCCCccHHHHHhhhCCC---cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~---~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+|.=+|+|. ....++..+... ..|+++|.++... +.+.+...+..+..+ ... .....|+|+...
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~----~~a~~~g~~~~~~~~---~~~---~~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETR----ARARELGLGDRVTTS---AAE---AVKGADLVILCV 74 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHH----HHHHhCCCCceecCC---HHH---HhcCCCEEEECC
Confidence 5788888764 444444333222 3799999998443 333332111111111 111 124679999888
Q ss_pred CChhHHHHHHHHHhccCCCCcEEE
Q 021911 222 AQPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 222 ~~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
|......++. .+...++++..++
T Consensus 75 p~~~~~~v~~-~l~~~l~~~~iv~ 97 (307)
T PRK07502 75 PVGASGAVAA-EIAPHLKPGAIVT 97 (307)
T ss_pred CHHHHHHHHH-HHHhhCCCCCEEE
Confidence 8665555555 6667788886443
No 392
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=78.96 E-value=6.7 Score=32.24 Aligned_cols=104 Identities=18% Similarity=0.085 Sum_probs=55.9
Q ss_pred CCEEEEEecCCCccHHHHHhh----hCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEE----------------EccCCC
Q 021911 144 GARVLYLGAASGTTVSHVSDI----VGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI----------------IEDARH 203 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~----~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~----------------~~D~~~ 203 (305)
.-++||+-+|+|-+...|.+. +....+|..+.......+++.+..+.. .+.+. .+-++.
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~-~~~~~t~~~~~~~~g~~~i~vMc~at~ 83 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL-PVRFHTNARMRTHFGSSIIDVMCHATY 83 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-SEEEESTTSS----SSSSEEEEEHHHH
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC-CcccCceeeeccccCCCcccccccHHH
Confidence 358999999999877666643 335668999999987777777766543 12211 111100
Q ss_pred C--cccccCCCcEeEEEEeCC-ChhHHHHHHHHHhccCCCCc--EEEEEE
Q 021911 204 P--AKYRMLVGMVDVIFSDVA-QPDQARILALNASYFLKAGG--HFVISI 248 (305)
Q Consensus 204 ~--~~~~~~~~~fD~V~~d~~-~~~~~~~l~~~a~~~LkpGG--~lv~s~ 248 (305)
. .........||+||+|-. +.|...+......+.+...| .+++.+
T Consensus 84 ~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mT 133 (148)
T PF07652_consen 84 GHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMT 133 (148)
T ss_dssp HHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred HHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEe
Confidence 0 000011357999999988 34555555544444444445 666665
No 393
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.94 E-value=12 Score=34.20 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=55.9
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccC-CCCcc-c-ccCCCcE
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA-RHPAK-Y-RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~-~~~~~-~-~~~~~~f 214 (305)
.++++.+||-.|+ +.|..+..+|+..+ .+|++++.++.. .+.+++..--.++..+- ..... . ......+
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~----~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEK----VAYLKKLGFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHH----HHHHHHcCCCEEEeccccccHHHHHHHhCCCCe
Confidence 5778999999885 35667777888754 479999888743 33333221111111111 01110 0 0112469
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|+-....+ .+. .+.+.|+++|+++..
T Consensus 209 dvv~d~~G~~----~~~-~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYFDNVGGE----FSN-TVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEEECCCHH----HHH-HHHHHhCcCcEEEEe
Confidence 9998544432 233 667899999999864
No 394
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=78.84 E-value=16 Score=37.49 Aligned_cols=156 Identities=21% Similarity=0.122 Sum_probs=82.0
Q ss_pred ccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEE---eC----------ChHH-HHHHHHHHHcC-CCeEE---E
Q 021911 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAV---EF----------SHRS-GRDLVNMAKKR-TNVIP---I 197 (305)
Q Consensus 136 l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~av---D~----------s~~~-~~~l~~~a~~~-~nI~~---~ 197 (305)
|.++.+++ ...|-.|=|+|+.+..+++.. |.++++=- |+ +|+. +..+-+. +.| -|... .
T Consensus 316 L~~~~i~~-~d~l~~GDGSGGita~lLR~~-p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~-~~Rcvn~~~~W~~ 392 (675)
T PF14314_consen 316 LKNLNIKY-RDALCGGDGSGGITACLLRMN-PTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGND-KSRCVNLDTCWEH 392 (675)
T ss_pred HHhcCCCc-ceeEEEecCchHHHHHHHHhC-cccceeeeccccccCCCCCCCCCCCcHHHhccCcc-cceeecchhhhcC
Confidence 34445666 455777888999999999875 55554421 22 2322 1111111 111 11111 1
Q ss_pred EccCCCCcccc-------cCCCcEeEEEEeCCChh------HHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhhhHH
Q 021911 198 IEDARHPAKYR-------MLVGMVDVIFSDVAQPD------QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQ 264 (305)
Q Consensus 198 ~~D~~~~~~~~-------~~~~~fD~V~~d~~~~~------~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~v~~ 264 (305)
--|.++..+.. ...-++|+|++|+-..| -...+...+..+|.++|.|+|-|....+.....
T Consensus 393 pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~------ 466 (675)
T PF14314_consen 393 PSDLSDPETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDY------ 466 (675)
T ss_pred ccccCCccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchh------
Confidence 22444442211 12348999999998433 233344467788999999999985433222210
Q ss_pred HHHHHHHHCCCcEeEEee--cCCCCCceEEEEEEEcCCC
Q 021911 265 SEVKKLQQDQFKPFEQVT--LEPFERDHACVVGGYRMPK 301 (305)
Q Consensus 265 ~~~~~l~~~Gf~~~e~~~--l~p~~~~~~~vv~~~~~~~ 301 (305)
..+..+-.. |+.++.+. +..-......+|+...+..
T Consensus 467 ~il~~lg~~-F~~V~l~qT~~SSs~TSEVYlv~~~~~~~ 504 (675)
T PF14314_consen 467 NILDLLGRY-FKSVELVQTQFSSSFTSEVYLVFQKLKKF 504 (675)
T ss_pred hHHHHHHhh-cCceEEEECCCCCCCceEEEEEEecccCC
Confidence 113333333 66666553 3333345666666665543
No 395
>PRK07109 short chain dehydrogenase; Provisional
Probab=78.62 E-value=11 Score=34.93 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=51.4
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|+. +....++++.+- ...+|+.++.++..++++.+..+.. .++.++.+|+.+...... ....
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 35678888854 456666665542 3358999998886666655554433 468889999987653221 1247
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.+..
T Consensus 86 iD~lInnAg 94 (334)
T PRK07109 86 IDTWVNNAM 94 (334)
T ss_pred CCEEEECCC
Confidence 899987664
No 396
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.53 E-value=14 Score=32.69 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+.++|-.|+. +....++++.+- ...+|+.++.++....++.+.. ..++.++.+|+.+...... ....+|
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4678888854 456666666542 3458999998874433333322 2468889999987643211 124689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.++.
T Consensus 83 ~lv~~ag 89 (261)
T PRK08265 83 ILVNLAC 89 (261)
T ss_pred EEEECCC
Confidence 9887654
No 397
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=78.51 E-value=23 Score=27.08 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=25.4
Q ss_pred cEeEEEEeCCC----------------hhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 213 MVDVIFSDVAQ----------------PDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 213 ~fD~V~~d~~~----------------~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.||+|+-|||- .+....+...+.++| +|.+.+.++
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P 52 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITP 52 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeC
Confidence 58999999991 233344554777778 999988885
No 398
>PLN02427 UDP-apiose/xylose synthase
Probab=78.47 E-value=4.4 Score=38.32 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=49.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCC--cEEEEEeCChHHHHHHHHHH--HcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~--~~V~avD~s~~~~~~l~~~a--~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.++||=.| |+|....+|++.+-.. .+|+++|.+......+.... ....+++++..|+++..........+|+||.
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH 92 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN 92 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence 36899776 6899999999876432 47999997753322222111 0114699999999876543222345898886
Q ss_pred eC
Q 021911 220 DV 221 (305)
Q Consensus 220 d~ 221 (305)
.+
T Consensus 93 lA 94 (386)
T PLN02427 93 LA 94 (386)
T ss_pred cc
Confidence 44
No 399
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.23 E-value=5.4 Score=35.79 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=40.7
Q ss_pred CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEE
Q 021911 166 GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFV 245 (305)
Q Consensus 166 ~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv 245 (305)
++..+|+++|.++ ..++.+.+..-+.....+ .. ....+|+|+...|...-..++. +...+|+++..+.
T Consensus 9 g~~~~v~g~d~~~----~~~~~a~~~g~~~~~~~~---~~----~~~~~DlvvlavP~~~~~~~l~-~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 9 GPDVEVYGYDRDP----ETLEAALELGIIDEASTD---IE----AVEDADLVVLAVPVSAIEDVLE-EIAPYLKPGAIVT 76 (258)
T ss_dssp TTTSEEEEE-SSH----HHHHHHHHTTSSSEEESH---HH----HGGCCSEEEE-S-HHHHHHHHH-HHHCGS-TTSEEE
T ss_pred CCCeEEEEEeCCH----HHHHHHHHCCCeeeccCC---Hh----HhcCCCEEEEcCCHHHHHHHHH-HhhhhcCCCcEEE
Confidence 4567999999999 455555444323222222 11 1246799999998777777777 7888888875443
No 400
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.74 E-value=5.8 Score=34.75 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+.+||-.|+ +|.....++..+- ...+|+.++-++....++.+..+.. .++.++.+|+.+...... ....+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i 85 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL 85 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 578888886 4556666665542 3358999998876555555444333 468899999987643211 12467
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.+..
T Consensus 86 d~li~~ag 93 (253)
T PRK06172 86 DYAFNNAG 93 (253)
T ss_pred CEEEECCC
Confidence 99997654
No 401
>PRK07063 short chain dehydrogenase; Provisional
Probab=77.25 E-value=8 Score=34.03 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccC-------CC
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
+.+||-.|+. +....++++.+ ....+|+.++.++...+++.+.... ..++.++.+|+.+....... ..
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5788888875 45666666554 2345899999887666666555543 24688899999876432111 24
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|.++.+..
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6899987654
No 402
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.15 E-value=8.3 Score=33.26 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=51.1
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+.+||-+|+ +|....++++.+- ...+|++++.++.....+.+...+...++++.+|+.+...... ....+|
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD 84 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 578888884 7788888877552 3358999998876655555444433568889999877643211 113689
Q ss_pred EEEEeC
Q 021911 216 VIFSDV 221 (305)
Q Consensus 216 ~V~~d~ 221 (305)
+||.+.
T Consensus 85 ~vi~~a 90 (237)
T PRK07326 85 VLIANA 90 (237)
T ss_pred EEEECC
Confidence 998754
No 403
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.90 E-value=7.1 Score=34.26 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=51.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|+.. ....++++.+- ...+|+.++.++...+++.+..+.. .++.++.+|+.+...... ....
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 367899888755 45666665542 3358999998876666655554433 467888899987643211 1247
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 87 id~lv~~ag 95 (253)
T PRK05867 87 IDIAVCNAG 95 (253)
T ss_pred CCEEEECCC
Confidence 899987654
No 404
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.38 E-value=11 Score=32.90 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|+ ++....+++..+- ...+|+.++.++...+++.+..... .++.++..|+++...... ....
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 3578887776 5567777776542 3458999998886655555444332 568899999987643210 1246
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.+..
T Consensus 83 ~d~vi~~ag 91 (258)
T PRK07890 83 VDALVNNAF 91 (258)
T ss_pred ccEEEECCc
Confidence 899987653
No 405
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=76.27 E-value=17 Score=27.74 Aligned_cols=89 Identities=20% Similarity=0.180 Sum_probs=49.1
Q ss_pred EEEEEecCCCccHHHHH-hhhCCCcEEEEE-eCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 146 RVLYLGAASGTTVSHVS-DIVGPNGVVYAV-EFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la-~~~~~~~~V~av-D~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
+|.=+|+|.-......+ ....+..+++++ |.++...+.+ .+..++. ...|+.+... ...+|+|+...|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~----~~~~~~~-~~~~~~~ll~----~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF----AEKYGIP-VYTDLEELLA----DEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH----HHHTTSE-EESSHHHHHH----HTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH----HHHhccc-chhHHHHHHH----hhcCCEEEEecCC
Confidence 56777876543222211 122245677654 9888443332 3333455 4455443322 2479999998888
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEE
Q 021911 224 PDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 224 ~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
....+++. ..|+.|=.+++.
T Consensus 73 ~~h~~~~~----~~l~~g~~v~~E 92 (120)
T PF01408_consen 73 SSHAEIAK----KALEAGKHVLVE 92 (120)
T ss_dssp GGHHHHHH----HHHHTTSEEEEE
T ss_pred cchHHHHH----HHHHcCCEEEEE
Confidence 77777666 455555444444
No 406
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=76.16 E-value=7.1 Score=35.86 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=52.1
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c--ccCCCcEe
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y--RMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~--~~~~~~fD 215 (305)
.++++.+||..++| .|..+..+|+..+ ...|++++.++.. .+.+++..-..++..+-..... . ......+|
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~----~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPER----LDLAKEAGATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHH----HHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 46678899997653 2445566667653 1368888777633 2333322101111111111100 0 01124689
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+...... ..+. .+.+.|+++|+++..
T Consensus 239 ~vld~~g~~---~~~~-~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVGFE---ETFE-QAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccCCH---HHHH-HHHHHhhcCCEEEEE
Confidence 998644432 2343 667899999998753
No 407
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.02 E-value=6.6 Score=34.11 Aligned_cols=79 Identities=6% Similarity=0.092 Sum_probs=50.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccc-------cCCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~-------~~~~~ 213 (305)
++.++|-.|+ +|....++++.+. ...+|+.++.++.....+.+..... .++.+++.|+.+..... .....
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3578888886 4556777766542 3357999998876555555544432 56888899987754221 01146
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 83 id~vi~~ag 91 (253)
T PRK08217 83 LNGLINNAG 91 (253)
T ss_pred CCEEEECCC
Confidence 899987653
No 408
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.95 E-value=19 Score=31.85 Aligned_cols=79 Identities=10% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCCEEEEEecCC-CccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHc--CCCeEEEEccCCCCccccc-------CC
Q 021911 143 PGARVLYLGAAS-GTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM-------LV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~-G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~-------~~ 211 (305)
.+..+|-.|+++ +.....+++.+- ...+|+.++.+.+....+.+...+ ..++.++.+|+.+...... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 367899999874 777888887653 334787776543211122222222 2467888999987653211 12
Q ss_pred CcEeEEEEeC
Q 021911 212 GMVDVIFSDV 221 (305)
Q Consensus 212 ~~fD~V~~d~ 221 (305)
..+|+++.++
T Consensus 86 g~ld~lv~na 95 (257)
T PRK08594 86 GVIHGVAHCI 95 (257)
T ss_pred CCccEEEECc
Confidence 5789888654
No 409
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.94 E-value=10 Score=33.06 Aligned_cols=77 Identities=17% Similarity=0.013 Sum_probs=49.3
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-CCCcEeEEEEeC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-LVGMVDVIFSDV 221 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-~~~~fD~V~~d~ 221 (305)
.+||-.|+ +|....++++.+- ...+|++++-++....++.+..+.. .++.++..|+.+...... ....+|+||.+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 46887776 5567777776542 3458999888765544544443332 468888999987654321 223789999865
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
.
T Consensus 82 g 82 (257)
T PRK09291 82 G 82 (257)
T ss_pred C
Confidence 4
No 410
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.91 E-value=25 Score=30.36 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=46.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCC-hHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFS-HRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s-~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~ 212 (305)
++.+||-.|+ +|....++++.+-. ..+|+.+..+ +....++.+..... .++.++.+|+.+...... ...
T Consensus 4 ~~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 4 SNKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567888887 46677777766532 2356665443 32333343333322 568889999987643211 124
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.++.
T Consensus 83 ~id~vi~~ag 92 (245)
T PRK12937 83 RIDVLVNNAG 92 (245)
T ss_pred CCCEEEECCC
Confidence 6899987654
No 411
>PRK07454 short chain dehydrogenase; Provisional
Probab=75.71 E-value=10 Score=32.92 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=51.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML-------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~-------~~~ 213 (305)
...++|-.|+ +|.....+++.+- ....|+.++.++....++.+..+.. .++.++.+|+++....... ...
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3467888885 6777777776552 3348999999876555554444332 4688899999876532110 135
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
.|+|+.++.
T Consensus 84 id~lv~~ag 92 (241)
T PRK07454 84 PDVLINNAG 92 (241)
T ss_pred CCEEEECCC
Confidence 899987654
No 412
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=75.64 E-value=10 Score=34.99 Aligned_cols=99 Identities=21% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEE-EEc-cCCCCcccccCCCcEe
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP-IIE-DARHPAKYRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~-~~~-D~~~~~~~~~~~~~fD 215 (305)
.++++++||-.|+ +.|..+..+|+..+ .+|++++.++.....+.+..-. +.+.. ... |...... ......+|
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lGa-~~vi~~~~~~~~~~~i~-~~~~~gvd 223 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLGF-DDAFNYKEEPDLDAALK-RYFPNGID 223 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCC-ceeEEcCCcccHHHHHH-HhCCCCcE
Confidence 5788999999886 35556777777754 4788888887432222221111 11111 011 1111000 01124689
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+-.... ..+. .+.+.|+++|+++..
T Consensus 224 ~v~d~~g~----~~~~-~~~~~l~~~G~iv~~ 250 (338)
T cd08295 224 IYFDNVGG----KMLD-AVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEECCCH----HHHH-HHHHHhccCcEEEEe
Confidence 99854432 2344 677899999999864
No 413
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=75.61 E-value=12 Score=28.64 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=44.3
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
+|| ++|+.|.+|..+++.+ .+.++++ -++++......+.... ...+|+|++-+-..
T Consensus 2 ~Il-l~C~~GaSSs~la~km-------------------~~~a~~~gi~~~i~a~~~~e~~~~---~~~~Dvill~PQv~ 58 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANAL-------------------NKGAKERGVPLEAAAGAYGSHYDM---IPDYDLVILAPQMA 58 (99)
T ss_pred EEE-EECCCCCCHHHHHHHH-------------------HHHHHHCCCcEEEEEeeHHHHHHh---ccCCCEEEEcChHH
Confidence 344 6779998888888764 2333333 2455555555444332 35789888776443
Q ss_pred hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 225 DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+.. ++...+.+-|.-+..+
T Consensus 59 ~~~~----~i~~~~~~~~ipv~~I 78 (99)
T cd05565 59 SYYD----ELKKDTDRLGIKLVTT 78 (99)
T ss_pred HHHH----HHHHHhhhcCCCEEEe
Confidence 3333 4446666666655554
No 414
>PRK12746 short chain dehydrogenase; Provisional
Probab=75.56 E-value=17 Score=31.61 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCEEEEEecCCCccHHHHHhhhCCCc-EEEEE-eCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccC----------
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGPNG-VVYAV-EFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRML---------- 210 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~~~-~V~av-D~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~---------- 210 (305)
+.+||=.|+ +|....++++.+-..+ +|+.+ .-+.....+..+..... .++.++.+|+.+.......
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 84 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI 84 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence 468887785 6778888887653333 45443 34443333333333322 4688889999876532110
Q ss_pred ---CCcEeEEEEeCC
Q 021911 211 ---VGMVDVIFSDVA 222 (305)
Q Consensus 211 ---~~~fD~V~~d~~ 222 (305)
...+|+|+.++.
T Consensus 85 ~~~~~~id~vi~~ag 99 (254)
T PRK12746 85 RVGTSEIDILVNNAG 99 (254)
T ss_pred ccCCCCccEEEECCC
Confidence 135899987664
No 415
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=75.53 E-value=6.9 Score=35.62 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=47.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHH---HcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a---~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+++||-.|+ +|....++++.+-. ..+|++++.++.......... ...++++++..|+++..........+|.||.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 467887774 78888998876532 347888776542211111111 1125789999999886543323356899887
Q ss_pred eCC
Q 021911 220 DVA 222 (305)
Q Consensus 220 d~~ 222 (305)
.++
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 554
No 416
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.39 E-value=6.1 Score=35.78 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=36.5
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR 191 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~ 191 (305)
...+++.|||..+|+|++..+.... + ...+++|+++...+.+.+...+.
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~-~--r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL-G--RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc-C--CceEEEecCHHHHHHHHHHHHhh
Confidence 5678999999999999877765554 3 37899999996665555555443
No 417
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=75.26 E-value=14 Score=31.32 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
.+.+||=+|+ +|.....++..+- ...+|+.++-+....+.+.+......++.....|..+..........+|+|++..
T Consensus 27 ~~~~vlVlGg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at 105 (194)
T cd01078 27 KGKTAVVLGG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG 105 (194)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence 4578888875 3555555544332 2347888887776555555544333334444455544322111234679998876
Q ss_pred CChhH
Q 021911 222 AQPDQ 226 (305)
Q Consensus 222 ~~~~~ 226 (305)
+...+
T Consensus 106 ~~g~~ 110 (194)
T cd01078 106 AAGVE 110 (194)
T ss_pred CCCce
Confidence 65553
No 418
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.25 E-value=11 Score=32.71 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=51.3
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+.+||-.|+ +|....++++.+ ....+|+.++.++....++.+..... .++.++..|+.+...... ....+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI 85 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 467888885 677888877654 33458999998876555554444332 468889999977653211 12468
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (239)
T PRK07666 86 DILINNAG 93 (239)
T ss_pred cEEEEcCc
Confidence 99998654
No 419
>PRK06949 short chain dehydrogenase; Provisional
Probab=75.02 E-value=11 Score=32.97 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=52.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.| ++|....++++.+. ...+|++++.++..++++.+..... .++.++..|+.+...... ....
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 467888888 56677777776653 3347999999886666655544332 468888899877543211 1236
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.+..
T Consensus 87 ~d~li~~ag 95 (258)
T PRK06949 87 IDILVNNSG 95 (258)
T ss_pred CCEEEECCC
Confidence 899988664
No 420
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=75.01 E-value=5.3 Score=32.32 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=24.0
Q ss_pred EEecCCC--ccHHHHH-hhhCCCcEEEEEeCChHHHHHHHHH
Q 021911 149 YLGAASG--TTVSHVS-DIVGPNGVVYAVEFSHRSGRDLVNM 187 (305)
Q Consensus 149 DlG~G~G--~~t~~la-~~~~~~~~V~avD~s~~~~~~l~~~ 187 (305)
|+||..| ..+..++ +...+...|+++|.++.....+...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555544 2456778999999999877666666
No 421
>PRK05650 short chain dehydrogenase; Provisional
Probab=74.87 E-value=9.4 Score=33.89 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=48.8
Q ss_pred EEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcEeE
Q 021911 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMVDV 216 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~fD~ 216 (305)
+||-.|+ +|....++++.+- ...+|+.++.++...+++.+..+.. .++.++.+|+.+...... ....+|+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5776775 5567777766542 3458999998876666655544432 578889999987643211 1146899
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+.+..
T Consensus 81 lI~~ag 86 (270)
T PRK05650 81 IVNNAG 86 (270)
T ss_pred EEECCC
Confidence 988654
No 422
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.81 E-value=8.2 Score=33.51 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=50.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-------CCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-------~~~fD 215 (305)
+.+||-+|+. |....++++.+- ...+|+.++-++.....+........++.++.+|+.+....... ...+|
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 83 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD 83 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4678888754 566666665542 23579999998865555544443234588899999876543211 13689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.+..
T Consensus 84 ~vi~~ag 90 (251)
T PRK07231 84 ILVNNAG 90 (251)
T ss_pred EEEECCC
Confidence 9998664
No 423
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=74.68 E-value=17 Score=33.63 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccc--cCCCcEeE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR--MLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~--~~~~~fD~ 216 (305)
..+++.+||-+|||+ |..+..+|+..+ ...|++++.++.. ++.+++..--.++..+-....... .....+|.
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~----~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEK----LALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHH----HHHHHHcCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 567789999997642 234455566654 2247889988743 333333211111111111111000 11235774
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
++.|..-.. ..+. .+.+.|+++|++++.
T Consensus 232 ~v~d~~G~~--~~~~-~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 232 LILETAGVP--QTVE-LAIEIAGPRAQLALV 259 (347)
T ss_pred EEEECCCCH--HHHH-HHHHHhhcCCEEEEE
Confidence 444444221 2333 566899999999875
No 424
>PRK07677 short chain dehydrogenase; Provisional
Probab=74.54 E-value=12 Score=32.69 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=48.2
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcEe
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+++|-.|++. ....++++.+- ...+|+.++.++....++.+...+. .++.++.+|+.+...... ....+|
T Consensus 2 k~~lItG~s~-giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 2 KVVIITGGSS-GMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 5678777755 46666665442 3348999998876555555444432 478889999977543211 124689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
.|+.+..
T Consensus 81 ~lI~~ag 87 (252)
T PRK07677 81 ALINNAA 87 (252)
T ss_pred EEEECCC
Confidence 9987653
No 425
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.49 E-value=18 Score=34.43 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=57.7
Q ss_pred cCCCccHHHHHhhh--CCCcEEEEE---eCChHHHHHHHHHHHcC--------CCeEEEEccCCCCc------ccccCCC
Q 021911 152 AASGTTVSHVSDIV--GPNGVVYAV---EFSHRSGRDLVNMAKKR--------TNVIPIIEDARHPA------KYRMLVG 212 (305)
Q Consensus 152 ~G~G~~t~~la~~~--~~~~~V~av---D~s~~~~~~l~~~a~~~--------~nI~~~~~D~~~~~------~~~~~~~ 212 (305)
-+||.+..++...+ ....+|+|. +-.+.+...+.+.+... .+|+++.+|...+. ++..+.+
T Consensus 7 GATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~La~ 86 (382)
T COG3320 7 GATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQELAE 86 (382)
T ss_pred cCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHHhh
Confidence 36888887766543 234678887 33343444444444411 68999999997653 2334567
Q ss_pred cEeEEEEeCCC------------h---hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVAQ------------P---DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~------------~---~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+|+-+.+. + --.+++.+.+.-..|| ..++|+
T Consensus 87 ~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp--~~yVSs 135 (382)
T COG3320 87 NVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKP--LHYVSS 135 (382)
T ss_pred hcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCce--eEEEee
Confidence 99999987761 1 2445555445555665 566665
No 426
>PRK08618 ornithine cyclodeaminase; Validated
Probab=74.44 E-value=24 Score=32.74 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=53.3
Q ss_pred CCCCCEEEEEecCCCccHHHHH-hhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEE-ccCCCCcccccCCCcEeEEE
Q 021911 141 IKPGARVLYLGAASGTTVSHVS-DIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII-EDARHPAKYRMLVGMVDVIF 218 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la-~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~-~D~~~~~~~~~~~~~fD~V~ 218 (305)
.+...+|+=+|||.=......+ ..+.+-.+|+.++.++...+++.+..+++..+.+.. .|... .....|+|+
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~~aDiVi 197 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADE------AIEEADIIV 197 (325)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH------HHhcCCEEE
Confidence 3456789888887533322211 112233478888999877777776655433333222 22211 124689999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
+.-+.... +. . .+||||-+ +.++
T Consensus 198 ~aT~s~~p---~i-~--~~l~~G~h-V~~i 220 (325)
T PRK08618 198 TVTNAKTP---VF-S--EKLKKGVH-INAV 220 (325)
T ss_pred EccCCCCc---ch-H--HhcCCCcE-EEec
Confidence 87775532 22 2 57899744 4443
No 427
>PLN02253 xanthoxin dehydrogenase
Probab=74.42 E-value=8.7 Score=34.24 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=50.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccC-------CCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~-------~~~fD 215 (305)
+.+||-.|+ +|....++++.+- ...+|+.++.++...+++.+......++.++..|+++....... ...+|
T Consensus 18 ~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id 96 (280)
T PLN02253 18 GKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD 96 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 567888885 4567777776542 34589999988755444444333224688999999876532111 14689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.++.
T Consensus 97 ~li~~Ag 103 (280)
T PLN02253 97 IMVNNAG 103 (280)
T ss_pred EEEECCC
Confidence 9987654
No 428
>PRK06128 oxidoreductase; Provisional
Probab=74.38 E-value=25 Score=31.83 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=45.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCCh--HHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH--RSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVG 212 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~--~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~ 212 (305)
+.+||-.|+ ++....+++..+- ...+|+.+..+. ....++.+..+.. .++.++.+|+.+...... ...
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 133 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG 133 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 578888885 5567777776553 234676665543 1222333333322 457788899987643211 124
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+||.+..
T Consensus 134 ~iD~lV~nAg 143 (300)
T PRK06128 134 GLDILVNIAG 143 (300)
T ss_pred CCCEEEECCc
Confidence 6899998664
No 429
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.27 E-value=8 Score=33.63 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccccc----CCCcEeEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRM----LVGMVDVI 217 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~----~~~~fD~V 217 (305)
++||-.|+ +|....++++.+- ...+|++++.++....++.+..... .++.++.+|+.+...... ....+|+|
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 46787774 5667777776552 3348999999886555555444332 578999999987653211 11357999
Q ss_pred EEeCC
Q 021911 218 FSDVA 222 (305)
Q Consensus 218 ~~d~~ 222 (305)
+.+..
T Consensus 81 v~~ag 85 (243)
T PRK07102 81 LIAVG 85 (243)
T ss_pred EECCc
Confidence 87543
No 430
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.00 E-value=8.8 Score=35.53 Aligned_cols=99 Identities=21% Similarity=0.170 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-cc-CCCcEe
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-RM-LVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~~-~~~~fD 215 (305)
.++++.+||-.|+| .|..+..+|+..+ ...|+++|.++. -.+.+++..--.++..+-..... . .. ....+|
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~----~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPN----RVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHH----HHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 56788999998654 2334555666654 236889998873 33444433211111111011100 0 01 123689
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+.....+. .+. .+.+.|+++|+++..
T Consensus 238 ~vld~~g~~~---~~~-~~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGGGQD---TFE-QALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCCCHH---HHH-HHHHHhhcCCEEEEe
Confidence 9986555432 333 667889999998854
No 431
>PRK06194 hypothetical protein; Provisional
Probab=73.92 E-value=9.9 Score=33.99 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHc-CCCeEEEEccCCCCcccccC-------CCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~~-------~~~f 214 (305)
+.+||=.|+ +|....++++.+- ...+|+.+|.++....+..+.... ..++.++.+|+++....... ...+
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 467887775 4567777776543 345799999887555554444333 24678899999876432111 1357
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.++.
T Consensus 85 d~vi~~Ag 92 (287)
T PRK06194 85 HLLFNNAG 92 (287)
T ss_pred CEEEECCC
Confidence 99998665
No 432
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.92 E-value=28 Score=30.63 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCCEEEEEecCC-CccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAAS-GTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~-G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.++.+|-.|+++ +.....+|+.+- ...+|+.++.+++ ..+.++... ..++.++.+|+++...... ....
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~-~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDR-MKKSLQKLV-DEEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchH-HHHHHHhhc-cCceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 357899989875 567777776552 3457888876642 222222221 1467888999987643211 1256
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.++.
T Consensus 84 iD~lv~nAg 92 (252)
T PRK06079 84 IDGIVHAIA 92 (252)
T ss_pred CCEEEEccc
Confidence 899887653
No 433
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.90 E-value=9.9 Score=35.39 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|+. +....++++.+. ...+|+.++-++..++++.+..+.. .++.++..|+.+...... ....
T Consensus 6 ~~k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 6 HGAVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 35688888875 456666665442 3458999998887766666555443 467788889987643211 1257
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|++|.+..
T Consensus 85 iD~lVnnAG 93 (330)
T PRK06139 85 IDVWVNNVG 93 (330)
T ss_pred CCEEEECCC
Confidence 899998764
No 434
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.83 E-value=34 Score=30.60 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCCEEEEEecC-CCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAA-SGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G-~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+..+|-.|++ ++.....+|+.+- ...+|+.+..++...+.+.+.+++...+.++++|+.+...... ..+.
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 88 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGK 88 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 35688888986 4678888887653 3347776655432222232333332345678899877643211 1257
Q ss_pred EeEEEEeC
Q 021911 214 VDVIFSDV 221 (305)
Q Consensus 214 fD~V~~d~ 221 (305)
+|+++.++
T Consensus 89 iD~lv~nA 96 (272)
T PRK08159 89 LDFVVHAI 96 (272)
T ss_pred CcEEEECC
Confidence 89999765
No 435
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.82 E-value=11 Score=28.33 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=36.1
Q ss_pred CEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCC
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~ 223 (305)
.+|| ++||+|..|+.++..+ .+.++++ -++++...++.+.... ...+|+|++-+..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~~~v~a~~~~~~~~~---~~~~Dvill~pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVPVKIAAGSYGAAGEK---LDDADVVLLAPQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCcEEEEEecHHHHHhh---cCCCCEEEECchH
Confidence 4566 8899998888777543 2334433 2345555555443322 3468999887654
Q ss_pred hhHHHHH
Q 021911 224 PDQARIL 230 (305)
Q Consensus 224 ~~~~~~l 230 (305)
.....-+
T Consensus 61 ~~~~~~i 67 (95)
T TIGR00853 61 AYMLPDL 67 (95)
T ss_pred HHHHHHH
Confidence 4434333
No 436
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.82 E-value=13 Score=35.92 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=53.6
Q ss_pred CCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
-++++|+-+|+|+ |..+..++..++ .+|+.+|.++.+ +..++.. ....+ +. .. ....+|+|+..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R----~~~A~~~-G~~~~--~~---~e---~v~~aDVVI~a 264 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPIC----ALQAAME-GYEVM--TM---EE---AVKEGDIFVTT 264 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhh----HHHHHhc-CCEEc--cH---HH---HHcCCCEEEEC
Confidence 5689999999986 334444445544 479999999843 3333332 22222 11 11 12457999875
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+ .++.......+|+|++|+..-
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeC
Confidence 4433 344423478999999998765
No 437
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.78 E-value=14 Score=33.65 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=55.2
Q ss_pred CCCCCCEEEEEec--CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeE-EEEccCCCCcc--cccCCCcE
Q 021911 140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI-PIIEDARHPAK--YRMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~--G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~-~~~~D~~~~~~--~~~~~~~f 214 (305)
.++++.+||-.|+ +.|..+..+|+..+ .+|++++.++.. .+.+++. .+. ++..+-.+... .......+
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~----~~~l~~~-Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDK----VAWLKEL-GFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHH----HHHHHHc-CCCEEEeCCCccHHHHHHHHCCCCc
Confidence 5678899998875 45557777888764 479999888743 3333332 111 11111111110 00112468
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+|+-.... ..+. .+.+.|+++|+++..
T Consensus 213 d~vld~~g~----~~~~-~~~~~l~~~G~iv~~ 240 (329)
T cd08294 213 DCYFDNVGG----EFSS-TVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEEECCCH----HHHH-HHHHhhccCCEEEEE
Confidence 999854432 2334 677899999999764
No 438
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=73.75 E-value=6.9 Score=37.44 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCCCCCEEEEEec-C-CCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCC---CeEEEEccCCC---Ccc-c-c
Q 021911 140 WIKPGARVLYLGA-A-SGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARH---PAK-Y-R 208 (305)
Q Consensus 140 ~~~~g~~VLDlG~-G-~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~---nI~~~~~D~~~---~~~-~-~ 208 (305)
.++++++||=+|+ | -|..+..+|+..+ ...+|+++|.++..+..+.+...... .......|... ... . .
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHH
Confidence 5678899998874 3 4556666777643 12379999999854333322210000 11111122211 100 0 0
Q ss_pred -cCCCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 209 -MLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 209 -~~~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.....+|+|+.....+. .+. .+.++|+++|.+++.
T Consensus 252 ~t~g~g~D~vid~~g~~~---~~~-~a~~~l~~~G~~v~~ 287 (410)
T cd08238 252 LTGGQGFDDVFVFVPVPE---LVE-EADTLLAPDGCLNFF 287 (410)
T ss_pred HhCCCCCCEEEEcCCCHH---HHH-HHHHHhccCCeEEEE
Confidence 01236899987655433 344 667899988876553
No 439
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=73.46 E-value=8.5 Score=35.32 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=54.6
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc-c-c-cCCCcEe
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-Y-R-MLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~-~-~-~~~~~fD 215 (305)
.+.++.+||..+++. |..+.++|+..+ .+|+++..++.. .+.+++..--+++...-..... . . .....+|
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~----~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDER----LEFARELGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHH----HHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 567889999997542 556677777754 578888777633 2333322111111111111100 0 0 1124589
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+....... .+. .+.+.|+++|+++..
T Consensus 230 ~vld~~g~~~---~~~-~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATGNPA---SME-EAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCCCHH---HHH-HHHHHHhcCCEEEEE
Confidence 9997654322 233 566899999998864
No 440
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.42 E-value=12 Score=32.77 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=49.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+.++|-.|+. +....++++.+- ...+|+.++.++....++.+..+.. .++.++.+|+.+...... ....+
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL 84 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678877765 456666665442 2358999998876665555544433 468888899987643211 12478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.++.
T Consensus 85 d~li~~ag 92 (254)
T PRK07478 85 DIAFNNAG 92 (254)
T ss_pred CEEEECCC
Confidence 99987664
No 441
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=73.34 E-value=6.6 Score=36.59 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=48.7
Q ss_pred CCEEEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHH----c--CCCeEEEEccCCCCcccccCCCcEeE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAK----K--RTNVIPIIEDARHPAKYRMLVGMVDV 216 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~----~--~~nI~~~~~D~~~~~~~~~~~~~fD~ 216 (305)
.++||-.| |+|....+|++.+-. ..+|+++|.........+.... . ..++.++.+|+++..........+|+
T Consensus 15 ~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ 93 (348)
T PRK15181 15 PKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY 93 (348)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence 47888888 689999999987632 2489999975422111111111 1 13688999999876433223346898
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
||.-++
T Consensus 94 ViHlAa 99 (348)
T PRK15181 94 VLHQAA 99 (348)
T ss_pred EEECcc
Confidence 886443
No 442
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.19 E-value=45 Score=30.06 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHH---------HHHHHHHHHcCCCeEEEEccCCCCccc-ccCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRS---------GRDLVNMAKKRTNVIPIIEDARHPAKY-RMLV 211 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~---------~~~l~~~a~~~~nI~~~~~D~~~~~~~-~~~~ 211 (305)
...+||.+|=|.=.++..|+..++ ..+.+++..++.+- ...-++..+...-..+...|++..... +.-.
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~ 135 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRL 135 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEecccccc
Confidence 457899988777777788888876 55677777654311 111222222222223444565544321 1235
Q ss_pred CcEeEEEEeCCCh------h-----------HHHHHHHHHhccCC-CCcEEEEEEc
Q 021911 212 GMVDVIFSDVAQP------D-----------QARILALNASYFLK-AGGHFVISIK 249 (305)
Q Consensus 212 ~~fD~V~~d~~~~------~-----------~~~~l~~~a~~~Lk-pGG~lv~s~~ 249 (305)
+.||.||-+.|+. + ..+-+...|..+|+ ..|.++++.+
T Consensus 136 ~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk 191 (282)
T KOG4174|consen 136 QRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLK 191 (282)
T ss_pred cccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 7899999999931 1 11223337889999 8999999863
No 443
>PRK07024 short chain dehydrogenase; Provisional
Probab=73.17 E-value=8.2 Score=33.99 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=48.1
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEeE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD~ 216 (305)
++||-.|+ +|....++++.+. ...+|+.++.++..+.++.+......++.++.+|+++...... ....+|+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 56777776 5567777776553 2348999998875544444333222368899999987643211 1235799
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+.+..
T Consensus 82 lv~~ag 87 (257)
T PRK07024 82 VIANAG 87 (257)
T ss_pred EEECCC
Confidence 997654
No 444
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=73.06 E-value=16 Score=31.78 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=48.6
Q ss_pred CEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccc-------ccCCCcEe
Q 021911 145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKY-------RMLVGMVD 215 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~-------~~~~~~fD 215 (305)
.+||=.| ++|....++++.+ ....+|++++.++...+.+.+..... .++.++.+|+.+.... .......|
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 3566666 5677788888664 23347999998875544444433322 4688899999876521 11124689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.+..
T Consensus 81 ~vi~~a~ 87 (255)
T TIGR01963 81 ILVNNAG 87 (255)
T ss_pred EEEECCC
Confidence 9987653
No 445
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.04 E-value=27 Score=30.13 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=45.4
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+.+||-.|+. |....++++.+- ...+|+.++.++....++.+.. ..++.++.+|+.+...... ....+|
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 5677777764 566676666542 3358888888764333332222 2467788889876543210 124689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.++.
T Consensus 83 ~vi~~ag 89 (249)
T PRK06500 83 AVFINAG 89 (249)
T ss_pred EEEECCC
Confidence 9887654
No 446
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=72.99 E-value=9.5 Score=36.40 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccC-CCCcc-c-c-cCCCcE
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA-RHPAK-Y-R-MLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~-~~~~~-~-~-~~~~~f 214 (305)
.+.++++||=.|+| .|..+..+|+..+. ..|+++|.++ +-++.+++. .+..+...- ..... . . .....+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~----~r~~~a~~~-Ga~~v~~~~~~~~~~~v~~~~~~~g~ 255 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNP----ARLAQARSF-GCETVDLSKDATLPEQIEQILGEPEV 255 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCH----HHHHHHHHc-CCeEEecCCcccHHHHHHHHcCCCCC
Confidence 56788898887664 23344556666542 2466678887 334444443 222221100 01100 0 0 112368
Q ss_pred eEEEEeCCChh-----------HHHHHHHHHhccCCCCcEEEEEE
Q 021911 215 DVIFSDVAQPD-----------QARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 215 D~V~~d~~~~~-----------~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+||-....+. ....+. .+.++|+++|++++.-
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 256 DCAVDCVGFEARGHGHDGKKEAPATVLN-SLMEVTRVGGAIGIPG 299 (393)
T ss_pred cEEEECCCCccccccccccccchHHHHH-HHHHHhhCCCEEEEee
Confidence 99986554331 123455 7778999999998843
No 447
>PRK06138 short chain dehydrogenase; Provisional
Probab=72.98 E-value=12 Score=32.54 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=49.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc-------CCCcEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
+.++|-.|| +|....++++.+- ...+|+.++-++.......+......++.++.+|+.+...... ....+|
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 83 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD 83 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 467888887 4667777776542 3358999988765544444433323568889999987643211 114789
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.+..
T Consensus 84 ~vi~~ag 90 (252)
T PRK06138 84 VLVNNAG 90 (252)
T ss_pred EEEECCC
Confidence 9987654
No 448
>PRK06181 short chain dehydrogenase; Provisional
Probab=72.82 E-value=12 Score=32.97 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=48.1
Q ss_pred CEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcEe
Q 021911 145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
.+||-.|+ +|....++++.+ ....+|++++.++...+.+.+..+.. .++.++.+|+.+...... ....+|
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 46776664 556777776543 23458999998876555554444333 468888999987643211 113689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.+..
T Consensus 81 ~vi~~ag 87 (263)
T PRK06181 81 ILVNNAG 87 (263)
T ss_pred EEEECCC
Confidence 9987653
No 449
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=72.81 E-value=11 Score=32.60 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+++||-.|+ +|....+++..+- ...+|++++-++.....+.+..... .++.++.+|+.+...... ....+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 568887775 5677777776542 2347999988865444444443332 568899999987643211 11368
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.++.
T Consensus 85 d~vi~~ag 92 (251)
T PRK12826 85 DILVANAG 92 (251)
T ss_pred CEEEECCC
Confidence 99987664
No 450
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=72.79 E-value=24 Score=34.69 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=50.4
Q ss_pred EEEEecCCCccHHHHHhhhCC-CcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 147 VLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 147 VLDlG~G~G~~t~~la~~~~~-~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
|--||. |.....||..+-. ..+|++.|.++.....+.+..... .++. ...|..+... .....|+|++.++..
T Consensus 4 IgvIGL--G~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~-~~~s~~e~v~---~l~~~d~Iil~v~~~ 77 (470)
T PTZ00142 4 IGLIGL--AVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVK-GYHTLEELVN---SLKKPRKVILLIKAG 77 (470)
T ss_pred EEEEeE--hHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcce-ecCCHHHHHh---cCCCCCEEEEEeCCh
Confidence 444444 5566666655432 238999999997766665543321 1222 1112111110 012468888777766
Q ss_pred hHHHHHHHHHhccCCCCcEEEEE
Q 021911 225 DQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
.+.+.+...+...|++|- +++.
T Consensus 78 ~~v~~vi~~l~~~L~~g~-iIID 99 (470)
T PTZ00142 78 EAVDETIDNLLPLLEKGD-IIID 99 (470)
T ss_pred HHHHHHHHHHHhhCCCCC-EEEE
Confidence 555444447778898884 4443
No 451
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.61 E-value=10 Score=33.54 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=51.2
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.++|-.|+..| ...+++..+ ....+|+.++.++..++++.+..+.. .++.++.+|+++...... ....
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4578888887654 555555443 23457888888876666665555443 368889999987653211 1246
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.+..
T Consensus 88 id~li~~ag 96 (265)
T PRK07097 88 IDILVNNAG 96 (265)
T ss_pred CCEEEECCC
Confidence 899997664
No 452
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.58 E-value=21 Score=30.99 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=48.6
Q ss_pred EEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcEeE
Q 021911 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMVDV 216 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~fD~ 216 (305)
++|-.|+ +|....++++.+ ....+|+.++.++...+++.+..... .++.++.+|+++...... .....|+
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4666775 566777777654 23457888988876655655554433 468889999987653211 1236799
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
|+.+..
T Consensus 81 vi~~ag 86 (254)
T TIGR02415 81 MVNNAG 86 (254)
T ss_pred EEECCC
Confidence 887654
No 453
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.55 E-value=6.8 Score=37.41 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHH
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~ 180 (305)
.+.|+++||-|.+|--+....|+.. | .+|+|||+||..
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q 69 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQ 69 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHH
Confidence 6899999999986654444444433 3 599999999743
No 454
>CHL00194 ycf39 Ycf39; Provisional
Probab=72.20 E-value=71 Score=29.14 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=44.3
Q ss_pred EEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+||=+| |+|....++++.+ ....+|+++.-++... .... ..+++++..|+.++.........+|+|+..
T Consensus 2 kIlVtG-atG~iG~~lv~~Ll~~g~~V~~l~R~~~~~----~~l~-~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 2 SLLVIG-ATGTLGRQIVRQALDEGYQVRCLVRNLRKA----SFLK-EWGAELVYGDLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCCCeEEEEEcChHHh----hhHh-hcCCEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence 566544 7899999988765 2334799988765221 1111 247899999998875433223467998864
No 455
>PRK08339 short chain dehydrogenase; Provisional
Probab=72.04 E-value=13 Score=32.96 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=50.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHc--CCCeEEEEccCCCCcccccC------CCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRML------VGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~--~~nI~~~~~D~~~~~~~~~~------~~~ 213 (305)
.+.++|-.|+..| ....+++.+ ....+|+.++.++....++.+..++ ..++.++.+|+++....... .+.
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 3577888887654 566666544 2345899999887655555544332 24688899999876432111 246
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+++.+..
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 899887654
No 456
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=72.01 E-value=17 Score=33.36 Aligned_cols=100 Identities=20% Similarity=0.246 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccc-ccCC-CcEeE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLV-GMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~-~~~~-~~fD~ 216 (305)
.+.++.+||..+++. |..+..+|+..+- ..|++++.++... +.+++.....++..+-...... .... ..+|+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKL----AVARELGADDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHH----HHHHHcCCCEEecCccccHHHHHHHhCCCCCCE
Confidence 567888999997543 4455666666532 1388888777332 2222221111111111111100 0111 34999
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
|+......+ .+. .+.+.|+++|+++...
T Consensus 231 vld~~g~~~---~~~-~~~~~l~~~G~~v~~g 258 (343)
T cd08236 231 VIEAAGSPA---TIE-QALALARPGGKVVLVG 258 (343)
T ss_pred EEECCCCHH---HHH-HHHHHhhcCCEEEEEc
Confidence 986543322 333 6678999999987653
No 457
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=71.99 E-value=13 Score=32.25 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=50.0
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+.+||-.|+ +|....+++..+- ...+|+.++.++....++.+..+.. .++.++..|+.+...... ....+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV 81 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 567888875 5667777776543 2348999998876555554444332 468889999987543211 11357
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.+..
T Consensus 82 d~vi~~ag 89 (250)
T TIGR03206 82 DVLVNNAG 89 (250)
T ss_pred CEEEECCC
Confidence 98887664
No 458
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.93 E-value=1 Score=37.41 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=28.0
Q ss_pred CCCcEeEEEEeCC-----ChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 210 LVGMVDVIFSDVA-----QPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 210 ~~~~fD~V~~d~~-----~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
.++++|+|++.-. ..+-...+. .++++|||+|+|-++.+
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alk-echr~Lrp~G~LriAvP 87 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALK-ECHRFLRPGGKLRIAVP 87 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCcCcEEEEEcC
Confidence 3578888886333 223444555 89999999999999874
No 459
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=71.88 E-value=4.9 Score=38.18 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=49.0
Q ss_pred CCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeC
Q 021911 143 PGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (305)
Q Consensus 143 ~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~ 221 (305)
+..+|+=+|+| .|..+...+..++ .+|+.+|.++...+.+..... ..+. .+..+..........+|+|+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g--~~v~---~~~~~~~~l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFG--GRIH---TRYSNAYEIEDAVKRADLLIGAV 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcC--ceeE---eccCCHHHHHHHHccCCEEEEcc
Confidence 34679988886 3334444444443 479999999854333322211 1122 11111111111135789999865
Q ss_pred CChh--HHHHHHHHHhccCCCCcEEEE
Q 021911 222 AQPD--QARILALNASYFLKAGGHFVI 246 (305)
Q Consensus 222 ~~~~--~~~~l~~~a~~~LkpGG~lv~ 246 (305)
+.+. ...++...+...+||++.++-
T Consensus 239 ~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 239 LIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 4321 112232355567888876664
No 460
>PLN02740 Alcohol dehydrogenase-like
Probab=71.66 E-value=27 Score=32.89 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC--Ccc-c-ccCCCcE
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH--PAK-Y-RMLVGMV 214 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~--~~~-~-~~~~~~f 214 (305)
.++++++||-+|||+ |..+..+|+..+ ...|+++|.++. -++.+++..--.++..+-.+ ... . ......+
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~----r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPE----KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChH----HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 577899999998642 224445555543 226999999883 34444433111122111100 100 0 0111269
Q ss_pred eEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 215 DVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 215 D~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
|+||-....+. .+. .+...++++ |++++.
T Consensus 270 dvvid~~G~~~---~~~-~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 270 DYSFECAGNVE---VLR-EAFLSTHDGWGLTVLL 299 (381)
T ss_pred CEEEECCCChH---HHH-HHHHhhhcCCCEEEEE
Confidence 99987665443 233 555688886 887764
No 461
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.61 E-value=11 Score=33.01 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+.+||-.|+ +|....+++..+- ...+|+.++.++....++.+..... .++.++.+|+.+...... ....+
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 567886664 5567777776542 3347999998886665665554433 457888999987653211 12358
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (262)
T PRK13394 86 DILVSNAG 93 (262)
T ss_pred CEEEECCc
Confidence 99887554
No 462
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=71.50 E-value=23 Score=33.01 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 141 IKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 141 ~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
.+++.+||-+|+| .|..+.++|+..+ ..|++++.++.....++ ++. .+..+. +..+..........+|+||-
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~---~~~-Ga~~~i-~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEAL---EHL-GADDYL-VSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH---Hhc-CCcEEe-cCCChHHHHHhcCCCcEEEE
Confidence 3578899988653 3334556666654 46888887763322222 211 121111 11111111111235898886
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
....+. .+. .+.+.|+++|+++..
T Consensus 251 ~~g~~~---~~~-~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 251 TVPVFH---PLE-PYLSLLKLDGKLILM 274 (357)
T ss_pred CCCchH---HHH-HHHHHhccCCEEEEE
Confidence 554332 333 566789999998875
No 463
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.44 E-value=26 Score=32.23 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=53.2
Q ss_pred cCCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-------CcccccC
Q 021911 139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-------PAKYRML 210 (305)
Q Consensus 139 ~~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-------~~~~~~~ 210 (305)
..++++.+||-.|+|. |..+..+|+.++- ..|++++-++.... .+++...-.++..+-.. .... ..
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~----~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~ 231 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLE----FAKELGATHTVNVRTEDTPESAEKIAEL-LG 231 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHH----HHHHcCCcEEeccccccchhHHHHHHHH-hC
Confidence 3678899999976643 4455666666542 13888887764322 22221111111111111 1111 11
Q ss_pred CCcEeEEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 211 VGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 211 ~~~fD~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+|+|+-...... .+. .+.+.|+++|+++..
T Consensus 232 ~~~~d~vld~~g~~~---~~~-~~~~~l~~~G~~v~~ 264 (343)
T cd05285 232 GKGPDVVIECTGAES---CIQ-TAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCEEEECCCCHH---HHH-HHHHHhhcCCEEEEE
Confidence 235999987555322 233 667899999998864
No 464
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.24 E-value=12 Score=35.14 Aligned_cols=98 Identities=19% Similarity=0.295 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEE-EEccCCCCcc-c-ccCCCcEe
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP-IIEDARHPAK-Y-RMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~-~~~D~~~~~~-~-~~~~~~fD 215 (305)
.++++.+||-.|+|. |..+..+|+..+. ..|+++|.++.. .+.+++.. +.. +..+-..... . ......+|
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k----~~~~~~~g-~~~~i~~~~~~~~~~v~~~~~~~~d 256 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSR----LELAKELG-ATHVINPKEEDLVAAIREITGGGVD 256 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHH----HHHHHHcC-CcEEecCCCcCHHHHHHHHhCCCCc
Confidence 567789999987542 4455666676542 269999998743 33333321 221 1111111100 0 00134689
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+-....+. .+. .+.+.|+++|+++..
T Consensus 257 ~vld~~g~~~---~~~-~~~~~l~~~G~~v~~ 284 (365)
T cd08278 257 YALDTTGVPA---VIE-QAVDALAPRGTLALV 284 (365)
T ss_pred EEEECCCCcH---HHH-HHHHHhccCCEEEEe
Confidence 9986554332 233 666789999998875
No 465
>PRK07814 short chain dehydrogenase; Provisional
Probab=71.14 E-value=14 Score=32.72 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=51.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
++.+||-.|+ +|....++++.+ ....+|+.++.++....++.+..+.. ..+.++.+|+++...... ....
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678888885 566777777654 23458999998876555555444322 468888899987653211 0146
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 88 id~vi~~Ag 96 (263)
T PRK07814 88 LDIVVNNVG 96 (263)
T ss_pred CCEEEECCC
Confidence 899987553
No 466
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.07 E-value=15 Score=32.18 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=47.6
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCccccc--------CCCcEe
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM--------LVGMVD 215 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~--------~~~~fD 215 (305)
.+||-.|+. |.....+++.+- ...+|+.++.++..++++.+... ..++.++++|+.+...... ....+|
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 357777755 566666665442 33489999988755555443332 2478899999987643211 034689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.++.
T Consensus 80 ~vi~~ag 86 (260)
T PRK08267 80 VLFNNAG 86 (260)
T ss_pred EEEECCC
Confidence 9997664
No 467
>PRK07035 short chain dehydrogenase; Provisional
Probab=70.88 E-value=14 Score=32.26 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=48.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+.+||-.|++.| ...+++..+- ...+|+.++.++...+.+.+...+. .++.++.+|+.+...... ....+
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 86 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL 86 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 467888887654 5555554432 2348999998876655555554433 457788889877643211 12468
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.+..
T Consensus 87 d~li~~ag 94 (252)
T PRK07035 87 DILVNNAA 94 (252)
T ss_pred CEEEECCC
Confidence 99987553
No 468
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.86 E-value=28 Score=30.17 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=51.0
Q ss_pred EEEEEecCCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHHcC---CC--eEEEEccCCCCcccccCCCcEeEEEE
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKR---TN--VIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~~~---~n--I~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
+|.=|| |+|.....++..+-.. .+|+.++.++...+.+.+..... .. +.....+. .. .....|+||+
T Consensus 2 kI~IIG-G~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~---~e---a~~~aDvVil 74 (219)
T TIGR01915 2 KIAVLG-GTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADN---AE---AAKRADVVIL 74 (219)
T ss_pred EEEEEc-CCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeCh---HH---HHhcCCEEEE
Confidence 456665 3566666666554222 37888888876555444322111 01 11111111 11 1346799999
Q ss_pred eCCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
..+......++. .+...++. .+++++
T Consensus 75 avp~~~~~~~l~-~l~~~l~~--~vvI~~ 100 (219)
T TIGR01915 75 AVPWDHVLKTLE-SLRDELSG--KLVISP 100 (219)
T ss_pred ECCHHHHHHHHH-HHHHhccC--CEEEEe
Confidence 998877777776 55555653 677765
No 469
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.71 E-value=43 Score=29.56 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=43.5
Q ss_pred CCCEEEEEecCCC-ccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHH-HcCCCeEEEEccCCCCcccc-------cCCC
Q 021911 143 PGARVLYLGAASG-TTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYR-------MLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G-~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a-~~~~nI~~~~~D~~~~~~~~-------~~~~ 212 (305)
.+..+|-.|++.| .....+|+.+- ...+|+.++.++.. .+.++.. .+.....++.+|+.+..... ....
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~-~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVL-EKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHH-HHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567888888764 45566655442 23478777766422 2222222 22122345678988764321 0125
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+++.++.
T Consensus 86 ~iDilVnnag 95 (260)
T PRK06603 86 SFDFLLHGMA 95 (260)
T ss_pred CccEEEEccc
Confidence 7899887653
No 470
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.71 E-value=18 Score=32.72 Aligned_cols=82 Identities=15% Similarity=0.025 Sum_probs=46.2
Q ss_pred EEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCCh
Q 021911 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~ 224 (305)
+|.-+|+ |.....++..+. ...+|+++|.++... +.+.+...+.....+ .. .....|+||...|..
T Consensus 2 ~I~IIG~--G~mG~sla~~L~~~g~~V~~~d~~~~~~----~~a~~~g~~~~~~~~----~~---~~~~aDlVilavp~~ 68 (279)
T PRK07417 2 KIGIVGL--GLIGGSLGLDLRSLGHTVYGVSRRESTC----ERAIERGLVDEASTD----LS---LLKDCDLVILALPIG 68 (279)
T ss_pred eEEEEee--cHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHCCCcccccCC----Hh---HhcCCCEEEEcCCHH
Confidence 4566665 445555554432 224899999998443 333332212111111 11 134679999988866
Q ss_pred hHHHHHHHHHhccCCCC
Q 021911 225 DQARILALNASYFLKAG 241 (305)
Q Consensus 225 ~~~~~l~~~a~~~LkpG 241 (305)
...+++. .+...++++
T Consensus 69 ~~~~~~~-~l~~~l~~~ 84 (279)
T PRK07417 69 LLLPPSE-QLIPALPPE 84 (279)
T ss_pred HHHHHHH-HHHHhCCCC
Confidence 6666665 677778776
No 471
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=70.69 E-value=25 Score=33.28 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
+++++||-.|+| -|..+..+|+..+ .+|++++.++.. ..+.+++. .+..+. |..+..........+|+|+-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~---~~~~a~~l-Ga~~~i-~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEK---EREAIDRL-GADSFL-VTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHH---hHHHHHhC-CCcEEE-cCcCHHHHHHhhCCCcEEEEC
Confidence 578999988874 2334556666654 468999887532 22333322 222111 111111110011358999865
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
...+. .+. .+.+.|+++|+++..
T Consensus 250 ~G~~~---~~~-~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALL-PLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHH-HHHHhhcCCCEEEEE
Confidence 54432 233 566789999999865
No 472
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=70.68 E-value=8.7 Score=35.69 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCC--CcEeEEEEe
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV--GMVDVIFSD 220 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~--~~fD~V~~d 220 (305)
+++||-.| |+|....++++.+- ...+|++++.++..............++.++.+|+++........ ..+|+|+..
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 57888887 57788888887653 334799998765332222222222246788899998765432111 246988865
Q ss_pred CC
Q 021911 221 VA 222 (305)
Q Consensus 221 ~~ 222 (305)
..
T Consensus 83 A~ 84 (349)
T TIGR02622 83 AA 84 (349)
T ss_pred Cc
Confidence 54
No 473
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=70.61 E-value=14 Score=32.89 Aligned_cols=79 Identities=10% Similarity=0.154 Sum_probs=49.5
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|+.. ....+++..+ ....+|+.++.++...+++.+..... .++.++.+|+.+...... ....
T Consensus 9 ~~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 9 KGKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 356788777654 5666666554 23458999998875555555444332 468889999987643211 1247
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.+..
T Consensus 88 id~li~~ag 96 (278)
T PRK08277 88 CDILINGAG 96 (278)
T ss_pred CCEEEECCC
Confidence 899987643
No 474
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.48 E-value=13 Score=33.83 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcE
Q 021911 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMV 214 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~f 214 (305)
+.+||-.|++ |....++++.+ ....+|+.++.++..++++.+..... ..+.++..|+.+...... ..+.+
T Consensus 40 ~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 118 (293)
T PRK05866 40 GKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV 118 (293)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4678888864 55677776654 23458999999876655555444332 457788899987643211 12478
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+|+.++.
T Consensus 119 d~li~~AG 126 (293)
T PRK05866 119 DILINNAG 126 (293)
T ss_pred CEEEECCC
Confidence 99998654
No 475
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=70.44 E-value=38 Score=30.73 Aligned_cols=83 Identities=10% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCCccHHHHHhhhCCC-cEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEeCCChhHHHHHH
Q 021911 153 ASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILA 231 (305)
Q Consensus 153 G~G~~t~~la~~~~~~-~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d~~~~~~~~~l~ 231 (305)
|.|.....++..+-.. .+|+.+|.++.....+.+ . .+.. ..+ +.. .....|+||+.++.+.+.+.+.
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----~-g~~~-~~s---~~~---~~~~advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----A-GAQA-AAS---PAE---AAEGADRVITMLPAGQHVISVY 70 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----c-CCee-cCC---HHH---HHhcCCEEEEeCCChHHHHHHH
Confidence 6677777777665332 379999999854443322 1 2211 111 111 2346799999998766544332
Q ss_pred ---HHHhccCCCCcEEEEEE
Q 021911 232 ---LNASYFLKAGGHFVISI 248 (305)
Q Consensus 232 ---~~a~~~LkpGG~lv~s~ 248 (305)
..+...++++ .+++.+
T Consensus 71 ~g~~~l~~~~~~g-~~vid~ 89 (288)
T TIGR01692 71 SGDEGILPKVAKG-SLLIDC 89 (288)
T ss_pred cCcchHhhcCCCC-CEEEEC
Confidence 2455567766 555543
No 476
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=70.03 E-value=10 Score=35.18 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=43.5
Q ss_pred CEEEEEecCCCccHHHHHhhhCC--CcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC-CcccccCCCcEeEEEE
Q 021911 145 ARVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAKYRMLVGMVDVIFS 219 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~~--~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~-~~~~~~~~~~fD~V~~ 219 (305)
++||-.| ++|...++|+..+-. ..+|+++|.+.... ........++++..|++. ..........+|+||-
T Consensus 2 ~~ilVtG-atGfiGs~l~~~L~~~~~~~V~~~~r~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 2 KKVLILG-VNGFIGHHLSKRILETTDWEVYGMDMQTDRL----GDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred cEEEEEC-CCcHHHHHHHHHHHhCCCCeEEEEeCcHHHH----HHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 3577555 689999999987632 24899999775321 111122468999999973 2221112346898884
No 477
>PRK05599 hypothetical protein; Provisional
Probab=69.99 E-value=25 Score=30.82 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=49.6
Q ss_pred EEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CCeEEEEccCCCCccccc-------CCCcEeE
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRM-------LVGMVDV 216 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~nI~~~~~D~~~~~~~~~-------~~~~fD~ 216 (305)
.||-.|++. .....+|..+....+|+.++-++..++++.+..++. ..+.++.+|+.+...... ..+.+|+
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 577777755 467777766544567888888876666665555443 247888999987653211 1257899
Q ss_pred EEEeCC
Q 021911 217 IFSDVA 222 (305)
Q Consensus 217 V~~d~~ 222 (305)
++.++.
T Consensus 81 lv~nag 86 (246)
T PRK05599 81 AVVAFG 86 (246)
T ss_pred EEEecC
Confidence 987654
No 478
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=69.92 E-value=26 Score=31.91 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=53.2
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcE-EEEEeCChHHHHHHHHHHHcCCCeE-EEEccCCCCcc-cccCCCcEe
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGV-VYAVEFSHRSGRDLVNMAKKRTNVI-PIIEDARHPAK-YRMLVGMVD 215 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~-V~avD~s~~~~~~l~~~a~~~~nI~-~~~~D~~~~~~-~~~~~~~fD 215 (305)
.+.++.+||.+|+| .|..+.++|+..+ .+ |++++.++.. .+.+++. .+. ++..+-..... .......+|
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~----~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEK----LELAKKL-GATETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHH----HHHHHHh-CCeEEecCCCCCHHHHHHhcCCCCc
Confidence 56788999999653 1334455566543 34 8888888743 3333322 222 22211111100 001235699
Q ss_pred EEEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 216 VIFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 216 ~V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
+|+...... ..+. .+.+.|+++|+++..
T Consensus 229 ~v~~~~~~~---~~~~-~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATGVP---KTLE-QAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCCCh---HHHH-HHHHHHhcCCEEEEE
Confidence 999765432 2333 666889999998764
No 479
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=69.86 E-value=12 Score=32.80 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCCEEEEEecCCCccHHHHHhhh-CCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCc
Q 021911 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGM 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~-~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~ 213 (305)
.+.+||-.|+ ++.....+++.+ ....+|+.++.++..+..+.+..++. .++.++.+|+.+...... ....
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 4678888886 555666666554 23468999999876655555544433 468899999987643210 1246
Q ss_pred EeEEEEeCC
Q 021911 214 VDVIFSDVA 222 (305)
Q Consensus 214 fD~V~~d~~ 222 (305)
+|+|+.++.
T Consensus 89 id~vi~~ag 97 (256)
T PRK06124 89 LDILVNNVG 97 (256)
T ss_pred CCEEEECCC
Confidence 799987654
No 480
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=69.84 E-value=29 Score=32.52 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC----Ccc-c-ccCCC
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH----PAK-Y-RMLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~----~~~-~-~~~~~ 212 (305)
.++++++||=.|||+ |..+..+|+.++ ..+|+++|.++.. ++.+++.. +..+ .|..+ ... . .....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~----~~~a~~~G-a~~~-i~~~~~~~~~~~~v~~~~~~ 254 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAK----FELAKKLG-ATDC-VNPNDYDKPIQEVIVEITDG 254 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHH----HHHHHHhC-CCeE-EcccccchhHHHHHHHHhCC
Confidence 567899999998642 335556666654 2269999999843 33443321 1111 11111 000 0 00123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAG-GHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s~ 248 (305)
.+|+||-....+. .+. .+.+.|+++ |++++.-
T Consensus 255 g~d~vid~~G~~~---~~~-~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 255 GVDYSFECIGNVN---VMR-AALECCHKGWGESIIIG 287 (368)
T ss_pred CCCEEEECCCCHH---HHH-HHHHHhhcCCCeEEEEe
Confidence 6898886555433 233 556788886 8887643
No 481
>PRK09186 flagellin modification protein A; Provisional
Probab=69.66 E-value=13 Score=32.34 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHc---CCCeEEEEccCCCCcccccC-------CC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~---~~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
+++||-.|+. |....++++.+- ...+|+.++.++...+++.+.... ...+.++.+|+.+....... ..
T Consensus 4 ~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5678888864 567777776653 335788888887655555444322 13567778999876532111 13
Q ss_pred cEeEEEEeC
Q 021911 213 MVDVIFSDV 221 (305)
Q Consensus 213 ~fD~V~~d~ 221 (305)
.+|+|+.++
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 489999765
No 482
>PRK08643 acetoin reductase; Validated
Probab=69.55 E-value=15 Score=32.11 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=48.6
Q ss_pred CEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCccccc-------CCCcEe
Q 021911 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRM-------LVGMVD 215 (305)
Q Consensus 145 ~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~-------~~~~fD 215 (305)
.++|-.|+ ++....++++.+- ...+|+.++.++.....+.+..... .++.++.+|+++...... ....+|
T Consensus 3 k~~lItGa-s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 3 KVALVTGA-GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 46776674 4557777776542 3458999998876555555444332 467888999988753211 124689
Q ss_pred EEEEeCC
Q 021911 216 VIFSDVA 222 (305)
Q Consensus 216 ~V~~d~~ 222 (305)
+|+.+..
T Consensus 82 ~vi~~ag 88 (256)
T PRK08643 82 VVVNNAG 88 (256)
T ss_pred EEEECCC
Confidence 9988663
No 483
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=69.32 E-value=26 Score=32.26 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=42.6
Q ss_pred CCCccHHHHHhhhCC--CcEEEEEeCChHHHHHHHHHHHcC---CCeE----EEEccCCCCcccccCC--CcEeEEEEeC
Q 021911 153 ASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKR---TNVI----PIIEDARHPAKYRMLV--GMVDVIFSDV 221 (305)
Q Consensus 153 G~G~~t~~la~~~~~--~~~V~avD~s~~~~~~l~~~a~~~---~nI~----~~~~D~~~~~~~~~~~--~~fD~V~~d~ 221 (305)
|+|...+.|.+.+-. ..+++.+|.++..+-++....... +++. ++.+|+++........ ..+|+||.-+
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEECh
Confidence 678888888876522 248999999997777776666422 3454 4588998875433223 3899999866
Q ss_pred C
Q 021911 222 A 222 (305)
Q Consensus 222 ~ 222 (305)
+
T Consensus 86 A 86 (293)
T PF02719_consen 86 A 86 (293)
T ss_dssp -
T ss_pred h
Confidence 6
No 484
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=69.20 E-value=28 Score=31.86 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=51.7
Q ss_pred CCCCCCEEEEEecC-CCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCC--CcccccCCCcEeE
Q 021911 140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH--PAKYRMLVGMVDV 216 (305)
Q Consensus 140 ~~~~g~~VLDlG~G-~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~--~~~~~~~~~~fD~ 216 (305)
.+.++.+||-.|+| .|..+..+|..++ .+|++++.++.. ++.+++.. +..+. +... ....-.....+|+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~----~~~~~~~g-~~~~i-~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDK----ADLARKLG-AHHYI-DTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHH----HHHHHHcC-CcEEe-cCCCccHHHHHHhcCCCCE
Confidence 56778899998853 2334445556544 378999888743 33333321 21111 1111 1100000135899
Q ss_pred EEEeCCChhHHHHHHHHHhccCCCCcEEEEE
Q 021911 217 IFSDVAQPDQARILALNASYFLKAGGHFVIS 247 (305)
Q Consensus 217 V~~d~~~~~~~~~l~~~a~~~LkpGG~lv~s 247 (305)
|+.....+. .+. .+.+.|+++|+++..
T Consensus 232 vi~~~g~~~---~~~-~~~~~l~~~G~~v~~ 258 (333)
T cd08296 232 ILATAPNAK---AIS-ALVGGLAPRGKLLIL 258 (333)
T ss_pred EEECCCchH---HHH-HHHHHcccCCEEEEE
Confidence 985432222 334 667899999998864
No 485
>PRK05875 short chain dehydrogenase; Provisional
Probab=68.96 E-value=15 Score=32.55 Aligned_cols=78 Identities=10% Similarity=-0.052 Sum_probs=49.6
Q ss_pred CCEEEEEecCCCccHHHHHhhhC-CCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccC-------CC
Q 021911 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRML-------VG 212 (305)
Q Consensus 144 g~~VLDlG~G~G~~t~~la~~~~-~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~-------~~ 212 (305)
+.+||-.|+. |....++++.+- ...+|+.++-++...+.+.+..... .++.++.+|+.+....... ..
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789988854 557777776542 3348999988875555544443322 4688888999876532111 13
Q ss_pred cEeEEEEeCC
Q 021911 213 MVDVIFSDVA 222 (305)
Q Consensus 213 ~fD~V~~d~~ 222 (305)
.+|+|+.+..
T Consensus 86 ~~d~li~~ag 95 (276)
T PRK05875 86 RLHGVVHCAG 95 (276)
T ss_pred CCCEEEECCC
Confidence 6799987653
No 486
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=68.90 E-value=54 Score=30.67 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=56.6
Q ss_pred EEEEEecCCCccHHHHHhhhCCCc-EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcc------cccCCCcEeEEE
Q 021911 146 RVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK------YRMLVGMVDVIF 218 (305)
Q Consensus 146 ~VLDlG~G~G~~t~~la~~~~~~~-~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~------~~~~~~~fD~V~ 218 (305)
+|.-+|+ |.|...||..+..++ .|.-.-.++..+.++.+ .+.|..+.. ++.-++. .......+|+|+
T Consensus 3 kI~ViGa--GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~---~~~N~~yLp-~i~lp~~l~at~Dl~~a~~~ad~iv 76 (329)
T COG0240 3 KIAVIGA--GSWGTALAKVLARNGHEVRLWGRDEEIVAEINE---TRENPKYLP-GILLPPNLKATTDLAEALDGADIIV 76 (329)
T ss_pred eEEEEcC--ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHh---cCcCccccC-CccCCcccccccCHHHHHhcCCEEE
Confidence 4555665 556666666554443 56666666644444322 233443332 2221111 111124589999
Q ss_pred EeCCChhHHHHHHHHHhccCCCCcEEEEEEc
Q 021911 219 SDVAQPDQARILALNASYFLKAGGHFVISIK 249 (305)
Q Consensus 219 ~d~~~~~~~~~l~~~a~~~LkpGG~lv~s~~ 249 (305)
..+|..-..+++. +...+|+++=.++..+|
T Consensus 77 ~avPs~~~r~v~~-~l~~~l~~~~~iv~~sK 106 (329)
T COG0240 77 IAVPSQALREVLR-QLKPLLLKDAIIVSATK 106 (329)
T ss_pred EECChHHHHHHHH-HHhhhccCCCeEEEEec
Confidence 9999887777777 66678888877777775
No 487
>PLN02827 Alcohol dehydrogenase-like
Probab=68.66 E-value=15 Score=34.78 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=52.0
Q ss_pred CCCCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCC----cc-c-ccCCC
Q 021911 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP----AK-Y-RMLVG 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~----~~-~-~~~~~ 212 (305)
.++++++||-.|+|+ |..+..+|+..+ ...|+++|.++.. .+.+++.. +..+ .|..+. .. . .....
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~----~~~a~~lG-a~~~-i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEK----AEKAKTFG-VTDF-INPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHH----HHHHHHcC-CcEE-EcccccchHHHHHHHHHhCC
Confidence 567899999997632 223344555543 2258899988743 33443321 2111 121111 00 0 01123
Q ss_pred cEeEEEEeCCChhHHHHHHHHHhccCCCC-cEEEEE
Q 021911 213 MVDVIFSDVAQPDQARILALNASYFLKAG-GHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~~~~~~~~l~~~a~~~LkpG-G~lv~s 247 (305)
.+|+||-....+. .+. .+.++|+++ |++++.
T Consensus 263 g~d~vid~~G~~~---~~~-~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 263 GADYSFECVGDTG---IAT-TALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCEEEECCCChH---HHH-HHHHhhccCCCEEEEE
Confidence 6899986555433 233 556789998 999763
No 488
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.54 E-value=33 Score=33.10 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=52.4
Q ss_pred CCCCEEEEEecCC-CccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 142 KPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 142 ~~g~~VLDlG~G~-G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
..+++|+-+|+|+ |.....+++.++ .+|+++|.++... ..+... ...+. +. .. .....|+||+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~----~~A~~~-G~~v~--~l---ee---al~~aDVVIta 257 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRA----LEAAMD-GFRVM--TM---EE---AAKIGDIFITA 257 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhH----HHHHhc-CCEeC--CH---HH---HHhcCCEEEEC
Confidence 5689999999986 333334444433 5899999998431 122221 22221 11 11 12467998875
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
... ..++.......+|+|++|+...
T Consensus 258 TG~---~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 258 TGN---KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CCC---HHHHHHHHHhcCCCCcEEEEEC
Confidence 443 3344435678999999888875
No 489
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=68.42 E-value=9 Score=36.68 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=72.8
Q ss_pred eeeecCchhhHHHHHHHccccccCCCCCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcCCCeEE
Q 021911 117 EYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP 196 (305)
Q Consensus 117 ~~~~~~~~~s~l~a~ll~~l~~~~~~~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~~nI~~ 196 (305)
--|..||....+...+. .+..+..++=..+|-...+..+...+.+..+|++.+.--.-...+++....+..|+.
T Consensus 49 Y~R~gnPt~~~le~~la------~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v 122 (386)
T PF01053_consen 49 YSRYGNPTVRALEQRLA------ALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEV 122 (386)
T ss_dssp BTTTC-HHHHHHHHHHH------HHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEE
T ss_pred eeccccccHHHHHHHHH------HhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEE
Confidence 33445888888877776 345567788788887777777777777777888887543333355554444467888
Q ss_pred EEccCCCCcccc-cCCCcEeEEEEeCC------ChhHHHHHHHHHhccCCCCc-EEEEEE
Q 021911 197 IIEDARHPAKYR-MLVGMVDVIFSDVA------QPDQARILALNASYFLKAGG-HFVISI 248 (305)
Q Consensus 197 ~~~D~~~~~~~~-~~~~~fD~V~~d~~------~~~~~~~l~~~a~~~LkpGG-~lv~s~ 248 (305)
...|..+..... .+....++|++..| .+|-.+ +.++.+.-| .+++..
T Consensus 123 ~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~-----i~~~a~~~g~~~~vVD 177 (386)
T PF01053_consen 123 TFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEA-----IAKLAKEHGDILVVVD 177 (386)
T ss_dssp EEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHH-----HHHHHHHTTT-EEEEE
T ss_pred EEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHH-----HHHHHHHhCCceEEee
Confidence 888886655432 23458899999777 233333 333444445 666665
No 490
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=68.23 E-value=39 Score=34.39 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=48.6
Q ss_pred CCCCCEEEEEecCCCccHHHHHh-hhCCCcEEEEEeCCh--HH---HHHHHHHHHc-CCCeEEEEccCCCCcccccCCCc
Q 021911 141 IKPGARVLYLGAASGTTVSHVSD-IVGPNGVVYAVEFSH--RS---GRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGM 213 (305)
Q Consensus 141 ~~~g~~VLDlG~G~G~~t~~la~-~~~~~~~V~avD~s~--~~---~~~l~~~a~~-~~nI~~~~~D~~~~~~~~~~~~~ 213 (305)
.....+|+-+|.|.-...+..+- ..+ -.++.+||.+. .. +.++.+.|++ .++|.+...+.............
T Consensus 126 ~qR~akVlVlG~Gg~~s~lv~sL~~sG-~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~ 204 (637)
T TIGR03693 126 LSRNAKILAAGSGDFLTKLVRSLIDSG-FPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEP 204 (637)
T ss_pred hhhcccEEEEecCchHHHHHHHHHhcC-CCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcC
Confidence 34568999999987443332222 222 34787886542 22 2366777777 46666665554333322233578
Q ss_pred EeEEEEeCCChh
Q 021911 214 VDVIFSDVAQPD 225 (305)
Q Consensus 214 fD~V~~d~~~~~ 225 (305)
||+|++-...++
T Consensus 205 ~DiVi~vsDdy~ 216 (637)
T TIGR03693 205 ADWVLYVSDNGD 216 (637)
T ss_pred CcEEEEECCCCC
Confidence 999998555443
No 491
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.15 E-value=17 Score=31.54 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCC-------cE
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVG-------MV 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~-------~f 214 (305)
.+.+||=.|+..+.=...+........+|+.++.++.....+.+..+.. .++.++.+|+.+......... .+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV 82 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Q ss_pred eEEEEeCC
Q 021911 215 DVIFSDVA 222 (305)
Q Consensus 215 D~V~~d~~ 222 (305)
|+||.+..
T Consensus 83 d~vi~~a~ 90 (258)
T PRK12429 83 DILVNNAG 90 (258)
T ss_pred CEEEECCC
No 492
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=68.02 E-value=15 Score=33.63 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCc-------E
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGM-------V 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~-------f 214 (305)
.+.+||-.|+..|.=...+........+|+.++.++....++.+..... .++.++..|+.+.......... +
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 84 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL 84 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Q ss_pred eEEEEeC
Q 021911 215 DVIFSDV 221 (305)
Q Consensus 215 D~V~~d~ 221 (305)
|+||.++
T Consensus 85 D~li~nA 91 (322)
T PRK07453 85 DALVCNA 91 (322)
T ss_pred cEEEECC
No 493
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=68.01 E-value=42 Score=29.56 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCEEEEEecC-CCccHHHHHhhhCCCc-EEEEEeCChH--HHHHHHHHHHcC-CCeEEEEccCCCCcccccC-------
Q 021911 143 PGARVLYLGAA-SGTTVSHVSDIVGPNG-VVYAVEFSHR--SGRDLVNMAKKR-TNVIPIIEDARHPAKYRML------- 210 (305)
Q Consensus 143 ~g~~VLDlG~G-~G~~t~~la~~~~~~~-~V~avD~s~~--~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~------- 210 (305)
.+..+|-.|++ ++.....+|..+-..+ +|+.++.+.. ...+.++...+. .++.++.+|+.+.......
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK 84 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Q ss_pred CCcEeEEEEeCC--------------------------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 211 VGMVDVIFSDVA--------------------------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 211 ~~~fD~V~~d~~--------------------------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
...+|+++.++. ..-...+.. .+...|+.+|+++...
T Consensus 85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~-~~~~~m~~~g~Iv~is 147 (258)
T PRK07370 85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCK-AAKPLMSEGGSIVTLT 147 (258)
T ss_pred cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHH-HHHHHHhhCCeEEEEe
No 494
>PRK07985 oxidoreductase; Provisional
Probab=67.99 E-value=53 Score=29.66 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCC--hHHHHHHHHHHHcC-CCeEEEEccCCCCc-------ccccCCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS--HRSGRDLVNMAKKR-TNVIPIIEDARHPA-------KYRMLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s--~~~~~~l~~~a~~~-~nI~~~~~D~~~~~-------~~~~~~~ 212 (305)
.+.++|-.|+..|.=............+|+.++.+ ....+++.+..... .++.++.+|+++.. .......
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 127 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG 127 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Q ss_pred cEeEEEEeCC-----------------------ChhHHHHHHHHHhccCCCCcEEEEEE
Q 021911 213 MVDVIFSDVA-----------------------QPDQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 213 ~fD~V~~d~~-----------------------~~~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|+++.+.. ..-...++. .+...|+.+|.+++..
T Consensus 128 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~-~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 128 GLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQ-EAIPLLPKGASIITTS 185 (294)
T ss_pred CCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHH-HHHHhhhcCCEEEEEC
No 495
>PRK05876 short chain dehydrogenase; Provisional
Probab=67.74 E-value=13 Score=33.32 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC-CCeEEEEccCCCCcccccCCCcE-------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMV------- 214 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~-~nI~~~~~D~~~~~~~~~~~~~f------- 214 (305)
.+.+||-.|+.+|.=...+........+|+.++.++..++++.+..+.. .++.++.+|+++..........+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV 84 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Q ss_pred eEEEEeC
Q 021911 215 DVIFSDV 221 (305)
Q Consensus 215 D~V~~d~ 221 (305)
|+|+.++
T Consensus 85 d~li~nA 91 (275)
T PRK05876 85 DVVFSNA 91 (275)
T ss_pred CEEEECC
No 496
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.65 E-value=32 Score=31.49 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC--CC-eEEEEccCCCCcccc-------cCCC
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN-VIPIIEDARHPAKYR-------MLVG 212 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~--~n-I~~~~~D~~~~~~~~-------~~~~ 212 (305)
.++.||--||.+|.=....-+......+++-+--..+.++...+.+++. .+ +.++++|+++..... ...+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Q ss_pred cEeEEEEeCC-----------ChhHHHHHHHH----------HhccCCCC--cEEEEE
Q 021911 213 MVDVIFSDVA-----------QPDQARILALN----------ASYFLKAG--GHFVIS 247 (305)
Q Consensus 213 ~fD~V~~d~~-----------~~~~~~~l~~~----------a~~~LkpG--G~lv~s 247 (305)
.+|+++.|+- ..+...++..| +...|+.- |++++.
T Consensus 91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvi 148 (282)
T KOG1205|consen 91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVI 148 (282)
T ss_pred CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEE
No 497
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=67.57 E-value=28 Score=32.15 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCc--EEEEEeCChHHHHHHHHHHHcCCCeEEEEccCCCCcccccCCCcEeEEEEe
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNG--VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~--~V~avD~s~~~~~~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~d 220 (305)
++.+|+-+|+ |.....++..+...+ .|+.++.++...+.+.+.... ++..+.........+|+||+.
T Consensus 177 ~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~---------~~~~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 177 KGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG---------NAVPLDELLELLNEADVVISA 245 (311)
T ss_pred cCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC---------eEEeHHHHHHHHhcCCEEEEC
Q ss_pred CCChhHHHHHHHHHhccCCCCcEEEEEEcccccCCCCchhh
Q 021911 221 VAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEA 261 (305)
Q Consensus 221 ~~~~~~~~~l~~~a~~~LkpGG~lv~s~~~~~i~~~~~~~~ 261 (305)
.+.+....++. .+....+..+.+++-. ..+...++..
T Consensus 246 t~~~~~~~~~~-~~~~~~~~~~~~viDl---avPrdi~~~v 282 (311)
T cd05213 246 TGAPHYAKIVE-RAMKKRSGKPRLIVDL---AVPRDIEPEV 282 (311)
T ss_pred CCCCchHHHHH-HHHhhCCCCCeEEEEe---CCCCCCchhh
No 498
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=67.46 E-value=10 Score=36.10 Aligned_cols=82 Identities=23% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEecCCCccHHHHHhhhCCCc-EEEEEeCChHHHH---HHHHHHHcCCCeEEEEccCCCCcccccCCC---
Q 021911 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGR---DLVNMAKKRTNVIPIIEDARHPAKYRMLVG--- 212 (305)
Q Consensus 140 ~~~~g~~VLDlG~G~G~~t~~la~~~~~~~-~V~avD~s~~~~~---~l~~~a~~~~nI~~~~~D~~~~~~~~~~~~--- 212 (305)
+...+.+||-+| |+|....++++.+-..+ .|++++-++.... ...+.....++++++.+|+++.........
T Consensus 56 ~~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 56 KEPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred cCCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhC
Q ss_pred -cEeEEEEeCC
Q 021911 213 -MVDVIFSDVA 222 (305)
Q Consensus 213 -~fD~V~~d~~ 222 (305)
.+|+|+.+..
T Consensus 135 ~~~D~Vi~~aa 145 (390)
T PLN02657 135 DPVDVVVSCLA 145 (390)
T ss_pred CCCcEEEECCc
No 499
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=67.14 E-value=41 Score=32.22 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHH-------------HHHcCCCeEEEEccCCCCcccccCCCcEeEEEE
Q 021911 153 ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN-------------MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (305)
Q Consensus 153 G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~-------------~a~~~~nI~~~~~D~~~~~~~~~~~~~fD~V~~ 219 (305)
|.|...+.+|..+.....|+++|+++..+..+.+ ..+...++.......... ...|+|+.
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~-------~~ad~vii 79 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY-------RDADYVII 79 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh-------cCCCEEEE
Q ss_pred eCCCh----------hHHHHHHHHHhccCCCCcEEEEEE
Q 021911 220 DVAQP----------DQARILALNASYFLKAGGHFVISI 248 (305)
Q Consensus 220 d~~~~----------~~~~~l~~~a~~~LkpGG~lv~s~ 248 (305)
.+|.+ ...+.....+.+ ++++-.+++.+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S 117 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS 117 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
No 500
>PRK05854 short chain dehydrogenase; Provisional
Probab=66.96 E-value=16 Score=33.53 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCccHHHHHhhhCCCcEEEEEeCChHHHHHHHHHHHcC---CCeEEEEccCCCCcccccCCCc------
Q 021911 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM------ 213 (305)
Q Consensus 143 ~g~~VLDlG~G~G~~t~~la~~~~~~~~V~avD~s~~~~~~l~~~a~~~---~nI~~~~~D~~~~~~~~~~~~~------ 213 (305)
.+.++|-.|+..|.=...+........+|+.+.-++...+++++..... .++.++.+|+.+..........
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Q ss_pred -EeEEEEeC
Q 021911 214 -VDVIFSDV 221 (305)
Q Consensus 214 -fD~V~~d~ 221 (305)
+|+++.++
T Consensus 93 ~iD~li~nA 101 (313)
T PRK05854 93 PIHLLINNA 101 (313)
T ss_pred CccEEEECC
Done!