BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021912
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q920N2|BPL1_MOUSE Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=1 SV=1
Length = 722
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 14/229 (6%)
Query: 87 EIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELP--VGAVCVADVQF 144
E E F +E + +L T R G++++++ +T ++ E+P +G + +A Q
Sbjct: 440 EAFSSEHFSLETYRQNLQTTRLGKVILFAEVTSTTMSLLDGLMFEMPQEMGLIAIAVRQT 499
Query: 145 KGRGRSKNAWESPKGC----LMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLP 200
+G+GR NAW SP GC L+ ++ + G+ +P +Q++ SLA+ EA+ + G
Sbjct: 500 QGKGRGPNAWLSPVGCALSTLLVFIPLRSQLGQRIPFVQHLMSLAVVEAVRSI---PGYE 556
Query: 201 CLDIKIKWPNDLYLNGI-KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVL--- 256
+++++KWPND+Y + + K+GG+L ST + F + IG G NV N PT C+N ++
Sbjct: 557 DINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLIEEH 616
Query: 257 -RKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304
++ R + +IA E D F +QG + LYYK W+H
Sbjct: 617 NKQHGAGLKPLRADCLIARAVTVLEKLIDRFQDQGPDGVLPLYYKYWVH 665
>sp|P50747|BPL1_HUMAN Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=1 SV=1
Length = 726
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 14/229 (6%)
Query: 87 EIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELP--VGAVCVADVQF 144
E E F++E++ +L T + G++++++ P+T ++ + P +G + +A Q
Sbjct: 444 EAFSSEHFNLEIYRQNLQTKQLGKVILFAEVTPTTMRLLDGLMFQTPQEMGLIVIAARQT 503
Query: 145 KGRGRSKNAWESPKGC----LMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLP 200
+G+GR N W SP GC L+ S ++ + G+ +P +Q++ S+A+ EA+ + +
Sbjct: 504 EGKGRGGNVWLSPVGCALSTLLISIPLRSQLGQRIPFVQHLMSVAVVEAVRSIPEYQDI- 562
Query: 201 CLDIKIKWPNDLYLNGI-KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVL--- 256
++++KWPND+Y + + K+GG+L ST + F + IG G NV N PT C+N ++
Sbjct: 563 --NLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLITEY 620
Query: 257 -RKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304
++ R + +IA E F ++G ++ LYY+ W+H
Sbjct: 621 NKQHKAELKPLRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVH 669
>sp|O14353|BPL1_SCHPO Biotin--protein ligase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=bpl1 PE=3 SV=1
Length = 631
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 33/277 (11%)
Query: 57 LAENEIAESLKSNSTLKLPDNSEVSIHLQSE--IVKQE--SFDVELFMNSLATNRFGRLL 112
+ E+++A +L ++ L DN V I E I K+ SFD+EL+ + RFG +
Sbjct: 298 IPEHQLA-NLDISADLSDSDNEIVKIWYGDEEKICKKAKPSFDLELYAKLINGCRFGLPI 356
Query: 113 IWSPRLPSTHDVVSHNFCELP---VGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQM 169
I +P + ST ++ N+ L G + + Q GRGR +N W SP G L FSF I +
Sbjct: 357 IVAPVIRSTQTLLDKNYRFLDSTNTGFTVLGNYQTAGRGRGQNMWVSPYGTLAFSFIINV 416
Query: 170 EDGRV----VPLLQYVASLALTEAI-NYVCSRDGLPCLDIKIKWPNDLYL----NGI--- 217
+ + L QY+ +LA+ I Y + +P IKWPND+Y+ GI
Sbjct: 417 DAKNFSTTPIALFQYLMALAVVRGIREYAPGYENIPAF---IKWPNDVYVRVDKGGINFQ 473
Query: 218 -----KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVL---RKLSDSTY--QFR 267
K+ GI+ TS YR ++ +G G+NV+N PT LN ++ K SD+ +F
Sbjct: 474 GKQYMKLSGIIVTSNYRKNVLHLVVGCGINVSNLGPTVSLNTLVDEWNKNSDNPRLEKFS 533
Query: 268 REDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304
E ++A+ N+F+ ++ + +GF + YY+ WLH
Sbjct: 534 FEKLLASVLNQFDRYHRLLLEEGFSLILPEYYQYWLH 570
>sp|P48445|BPL1_YEAST Biotin--protein ligase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BPL1 PE=1 SV=1
Length = 690
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 52/262 (19%)
Query: 93 SFDVELFMNSL-ATNRFGRLLIWSPRLPSTHDVVSHN---FCELPVGAVC-VADVQFKGR 147
+FD++ + L N G LL++ + ST ++++N +P + V +Q GR
Sbjct: 364 NFDMKEYFKYLNVQNTIGSLLLYGEVVTSTSTILNNNKSLLSSIPESTLLHVGTIQVSGR 423
Query: 148 GRSKNAWESPKGCLMFSFTIQM-------EDGRVVPLLQYVASLALTEAINYVCSRDGLP 200
GR N W +PKG + + M V +QY++ LA +AI + G
Sbjct: 424 GRGGNTWINPKGVCASTAVVTMPLQSPVTNRNISVVFVQYLSMLAYCKAI--LSYAPGFS 481
Query: 201 CLDIKIKWPNDLY-------------------------LNGI-----KVGGILCTSTYRT 230
+ ++IKWPNDLY L I K+ G+L + +
Sbjct: 482 DIPVRIKWPNDLYALSPTYYKRKNLKLVNTGFEHTKLPLGDIEPAYLKISGLLVNTHFIN 541
Query: 231 KKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQF--------RREDVIAAFFNKFETF 282
K+ + +G G+N+ ++ PTT L + L++ Q + E + A + N E
Sbjct: 542 NKYCLLLGCGINLTSDGPTTSLQTWIDILNEERQQLHLDLLPAIKAEKLQALYMNNLEVI 601
Query: 283 YDTFINQGFQTLEELYYKTWLH 304
FIN G + YY+ WLH
Sbjct: 602 LKQFINYGAAEILPSYYELWLH 623
>sp|P46363|BIRA_HAEIN Bifunctional protein BirA OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=birA PE=3 SV=1
Length = 302
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 17/203 (8%)
Query: 101 NSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESP-KG 159
++T F + + P + ST++ + N L G +CVA+ Q GRGR W SP G
Sbjct: 61 QQISTALFPYSIHYQPIISSTNEWILQNILSLKKGDLCVAEYQTAGRGRRGRQWLSPFAG 120
Query: 160 CLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKV 219
+MFSF + + + L V LA+ E +N +++KWPND+ + K+
Sbjct: 121 QIMFSFYWAFDPKKSIEGLSLVIGLAIAEVLN------------VQVKWPNDILFDERKL 168
Query: 220 GGILC-TSTYRTKKFNVSIGIGLNVN---NEEPTTCLNAVLRKLSDSTYQFRREDVIAAF 275
GGIL + ++ N+ IGIG+NV+ E + V D Q +I
Sbjct: 169 GGILVEIANHKNGMLNLVIGIGINVSLSKQTEISQPYAEVCEIDPDVERQTLLPKLIQHL 228
Query: 276 FNKFETFYDTFINQGFQTLEELY 298
+ + F I++ FQ + Y
Sbjct: 229 YTRLNIFEQNGIDEEFQQAWQSY 251
>sp|E0U174|BIRA_BACPZ Bifunctional protein BirA OS=Bacillus subtilis subsp. spizizenii
(strain ATCC 23059 / NRRL B-14472 / W23) GN=birA PE=3
SV=1
Length = 325
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 15/205 (7%)
Query: 102 SLATNRFGRLLIWSPRLPST----HDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESP 157
L T G+ LI+ + ST H++ ++N P G + VAD Q GRGR W S
Sbjct: 76 GLKTEVMGQHLIYQDVISSTQKTAHELANNN---APEGTLVVADKQTAGRGRMSRVWHSQ 132
Query: 158 KGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGI 217
+G ++ I D +PL Q L L A+ V + + IKWPND+ +NG
Sbjct: 133 EGNGIWMSLILRPD---IPL-QKTPQLTLLAAVAVVQGIEAAAGIQTDIKWPNDILINGK 188
Query: 218 KVGGILCTSTYRTKKF-NVSIGIGLNVNNEEPT--TCLNAVLRKLSD-STYQFRREDVIA 273
K GIL + +V IGIG+NVN + L + LS S + R VI
Sbjct: 189 KTVGILTEMQAEEDRVRSVIIGIGINVNQQSDDFPDELKDIATSLSQASGEKIDRAGVIQ 248
Query: 274 AFFNKFETFYDTFINQGFQTLEELY 298
FE Y ++ GF ++ L+
Sbjct: 249 HILLCFEKRYRDYMTHGFTPIKLLW 273
>sp|P0CI75|BIRA_BACSU Bifunctional protein BirA OS=Bacillus subtilis (strain 168) GN=birA
PE=1 SV=1
Length = 325
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 102 SLATNRFGRLLIWSPRLPST----HDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESP 157
L T G+ LI+ L ST H++ ++N P G + VAD Q GRGR W S
Sbjct: 76 GLKTEVMGQHLIYHDVLSSTQKTAHELANNN---APEGTLVVADKQTAGRGRMSRVWHSQ 132
Query: 158 KGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGI 217
+G ++ I D +PL Q L L A+ V + + IKWPND+ +NG
Sbjct: 133 EGNGVWMSLILRPD---IPL-QKTPQLTLLAAVAVVQGIEEAAGIQTDIKWPNDILINGK 188
Query: 218 KVGGILCTSTYRTKKF-NVSIGIGLNVN---NEEPTTCLNAVLRKLSDSTYQFRREDVIA 273
K GIL + +V IGIG+NVN N+ P + + + R VI
Sbjct: 189 KTVGILTEMQAEEDRVRSVIIGIGINVNQQPNDFPDELKDIATSLSQAAGEKIDRAGVIQ 248
Query: 274 AFFNKFETFYDTFINQGFQTLEELY 298
FE Y ++ GF ++ L+
Sbjct: 249 HILLCFEKRYRDYMTHGFTPIKLLW 273
>sp|P29906|BIRA_PARDE Biotin--[acetyl-CoA-carboxylase] synthetase OS=Paracoccus
denitrificans GN=birA PE=3 SV=1
Length = 240
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 20/179 (11%)
Query: 136 AVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPL-LQYVASLALTEAINYVC 194
A +A QF GRGR W P G + ++ + G + L +VA+LAL +A+ C
Sbjct: 23 AWVLAREQFAGRGRRGREWVMPAGNFAGTLVLRPQGGALAAAQLSFVAALALYDALGLAC 82
Query: 195 SRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFN-VSIGIGLNVNN-------E 246
P + IKWPND+ LNG KV GIL S+ V++GIG+N+ E
Sbjct: 83 G----PAARLAIKWPNDVLLNGGKVAGILLESSGSGPGVQAVAVGIGVNLAGAPDAGAVE 138
Query: 247 EPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHR 305
T +V + + D++A F +++ DT+ GF + WL R
Sbjct: 139 PGATPPVSVQGETGHAVDPEEFLDLLAPAFARWQAQLDTY---GFAPIR----NAWLAR 190
>sp|P06709|BIRA_ECOLI Bifunctional protein BirA OS=Escherichia coli (strain K12) GN=birA
PE=1 SV=1
Length = 321
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 32/198 (16%)
Query: 116 PRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGC-LMFSFTIQMEDGRV 174
P + ST+ + EL G C+A+ Q GRGR W SP G L S ++E G
Sbjct: 85 PVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPA 144
Query: 175 VPL-LQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRT-KK 232
+ L V + + E + + + +++KWPNDLYL K+ GIL T +T
Sbjct: 145 AAIGLSLVIGIVMAEVLRKLGAD------KVRVKWPNDLYLQDRKLAGILVELTGKTGDA 198
Query: 233 FNVSIGIGLNVN---------------------NEEPTTCLNAVLRKLSDSTYQFRREDV 271
+ IG G+N+ N + T ++R+L + F +E
Sbjct: 199 AQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEG- 257
Query: 272 IAAFFNKFETFYDTFINQ 289
+A + +++E D FIN+
Sbjct: 258 LAPYLSRWEKL-DNFINR 274
>sp|Q5F5C8|BICOA_NEIG1 Bifunctional enzyme BirA/CoaX OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=birA/coaX PE=3 SV=1
Length = 592
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 40/173 (23%)
Query: 137 VCVADVQFKGRGRSKNAWESPKG-CLMFSFTI-----QMEDGRVVPLLQYVASLALTEAI 190
+CV +Q KGRGR W G CLMFSF Q E G + P VA+LA A+
Sbjct: 112 ICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWAFDRPQYELGSLSP----VAALACRRAL 167
Query: 191 NYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNV------- 243
G L+ +IKWPNDL + K+GGIL + K +GIG+N
Sbjct: 168 -------GCLGLETQIKWPNDLVVGRDKLGGILIETVRAGGKTVAVVGIGINFVLPKEVE 220
Query: 244 ---------------NNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFET 281
N + L +L +L Q+ E+ A F N++ET
Sbjct: 221 NAASVQSLFQTASRRGNADAAVLLETLLAELGAVLEQY-AEEGFAPFLNEYET 272
>sp|Q9JXF1|BICOA_NEIMB Bifunctional enzyme BirA/CoaX OS=Neisseria meningitidis serogroup B
(strain MC58) GN=birA/coaX PE=3 SV=1
Length = 592
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 59/112 (52%), Gaps = 17/112 (15%)
Query: 137 VCVADVQFKGRGRSKNAWESPKG-CLMFSFTI-----QMEDGRVVPLLQYVASLALTEAI 190
+CV +Q KGRGR W G CLMFSF Q E G + P VA++A A+
Sbjct: 112 ICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSP----VAAVACRRAL 167
Query: 191 NYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLN 242
SR GL D++IKWPNDL + K+GGIL + K +GIG+N
Sbjct: 168 ----SRLGL---DVQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGIN 212
>sp|P37416|BIRA_SALTY Bifunctional protein BirA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=birA PE=3 SV=2
Length = 320
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 10/180 (5%)
Query: 116 PRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGC-LMFSFTIQMEDGRV 174
P + ST+ + EL G CVA+ Q GRGR W SP G L S ++E G
Sbjct: 85 PVIDSTNQYLLDRIGELRSGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMYWRLEQGPA 144
Query: 175 VPL-LQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRT-KK 232
+ L V + + E + + + +++KWPNDLYL K+ GIL T +T
Sbjct: 145 AAIGLSLVIGIVMAEVLRKLGAD------KVRVKWPNDLYLLDRKLAGILVELTGKTGDA 198
Query: 233 FNVSIGIGLNVNNEE-PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGF 291
+ IG G+N+ +N L ++ R + A K + F +G
Sbjct: 199 AQIVIGAGINMAMRRVEEDVINQGWITLQEAGITLDRNMLAAKLIYKLRAALELFEQEGL 258
>sp|Q9JWI7|BICOA_NEIMA Bifunctional enzyme BirA/CoaX OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=birA/coaX PE=3 SV=1
Length = 592
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 57/112 (50%), Gaps = 17/112 (15%)
Query: 137 VCVADVQFKGRGRSKNAWESPKG-CLMFSFTI-----QMEDGRVVPLLQYVASLALTEAI 190
+CV +Q KGRGR W G CLMFSF Q E G + P VA++A A+
Sbjct: 112 ICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSP----VAAVACRRAL 167
Query: 191 NYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLN 242
SR GL +IKWPNDL + K+GGIL + K +GIG+N
Sbjct: 168 ----SRLGL---KTQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGIN 212
>sp|Q59014|BPL_METJA Putative biotin ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1619 PE=1 SV=1
Length = 237
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 112 LIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTI--QM 169
+I + ST+D E + +AD Q G+GR W S +G L FS + ++
Sbjct: 3 IIHLSEIDSTNDYAKELAKEGKRNFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKL 62
Query: 170 EDGRVVPLLQYVASLALTEAI-NYVCSRDGLPCLDIKIKWPNDLYL----NGIKVGGILC 224
+ +V+ LL + + E + NYV GL K+PND+ + N K+GGIL
Sbjct: 63 YNPKVINLL---VPICIIEVLKNYVDKELGL-------KFPNDIMVKVNDNYKKLGGIL- 111
Query: 225 TSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284
T T + + IGIG+NVNN+ + + + + ++++ F FE++ +
Sbjct: 112 --TELTDDYMI-IGIGINVNNQIRNEIREIAISLKEITGKELDKVEILSNFLKTFESYLE 168
Query: 285 TFINQGFQTLEEL-YYKTW 302
N+ E L YK +
Sbjct: 169 KLKNKEIDDYEILKKYKKY 187
>sp|Q9TT16|CLCN6_RABIT Chloride transport protein 6 OS=Oryctolagus cuniculus GN=CLCN6 PE=2
SV=1
Length = 869
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 178 LQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNV-- 235
L +V +L I V + G+P +IK YLNG+KV GI+ T K F V
Sbjct: 138 LTFVFLASLLVLIEPVAAGSGIP--EIKC------YLNGVKVPGIVRLRTLLCKVFGVLF 189
Query: 236 SIGIGLNVNNEEPTTCLNAVL 256
S+ GL V E P AV+
Sbjct: 190 SVAGGLFVGKEGPMIHSGAVV 210
>sp|O35454|CLCN6_MOUSE Chloride transport protein 6 OS=Mus musculus GN=Clcn6 PE=1 SV=1
Length = 870
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 178 LQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNV-- 235
L +V +L I V + G+P +IK YLNG+KV GI+ T K F V
Sbjct: 138 LTFVFLASLLVLIEPVAAGSGIP--EIKC------YLNGVKVPGIVRLRTLLCKVFGVLF 189
Query: 236 SIGIGLNVNNEEPTTCLNAVL 256
S+ GL V E P AV+
Sbjct: 190 SVSGGLFVGKEGPMIHSGAVV 210
>sp|B1GZG8|PNP_UNCTG Polyribonucleotide nucleotidyltransferase OS=Uncultured termite
group 1 bacterium phylotype Rs-D17 GN=pnp PE=3 SV=1
Length = 689
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 1 MPFTT--THLRL--------ISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCML 50
+PFTT +R+ I+PLI S LV + T+ + A + + + ML
Sbjct: 142 LPFTTPIASVRIGKINGQLIINPLIAEQKLSDLDLVVSGTEEALTMVEAGARELSEAEML 201
Query: 51 V---LSGKSL-----------AENEIA-ESLKSNSTLKLPDNSEVSIHLQSEIVKQESFD 95
L+GK+L A+ +I E + NS LK +E + +V +E +
Sbjct: 202 EALNLAGKTLKGICLFQKTLPAKTKIVVEQPQHNSLLKADIEAEAVSKAEMSVVIKEKCE 261
Query: 96 VELFMNSLATNRFGRLLIWSP-RLPSTHDVVSHN-FCELPVGAVCVADVQFKGRG 148
E F +S + RLL P LPST D + + F + V ++ GRG
Sbjct: 262 REFFWDSFKKDISSRLLEKYPEELPSTIDAILEDIFYQKARDLVLNKKIRTDGRG 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,127,640
Number of Sequences: 539616
Number of extensions: 4392521
Number of successful extensions: 10796
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10753
Number of HSP's gapped (non-prelim): 23
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)