Query 021912
Match_columns 305
No_of_seqs 208 out of 1330
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkx_A Biotin-[acetyl-COA-carb 100.0 1.2E-51 4.2E-56 392.7 19.1 206 91-304 64-277 (323)
2 2dxu_A Biotin--[acetyl-COA-car 100.0 1.1E-50 3.8E-55 370.6 21.5 183 101-303 2-187 (235)
3 2eay_A Biotin [acetyl-COA-carb 100.0 3.4E-50 1.2E-54 366.7 16.3 177 110-304 3-186 (233)
4 3rux_A BIRA bifunctional prote 100.0 2.7E-49 9.3E-54 368.2 19.1 199 91-304 12-222 (270)
5 2ej9_A Putative biotin ligase; 100.0 4.6E-49 1.6E-53 360.0 17.1 176 111-304 2-190 (237)
6 1bia_A BIRA bifunctional prote 100.0 2.2E-48 7.6E-53 369.1 20.7 203 92-304 65-271 (321)
7 3bfm_A Biotin protein ligase-l 100.0 2.9E-38 9.8E-43 287.8 14.9 170 110-304 12-192 (235)
8 2qhs_A Lipoyltransferase; glob 98.4 5.4E-06 1.9E-10 75.1 13.9 119 146-284 92-226 (237)
9 1w66_A Lipoyltransferase; lipo 97.4 0.0027 9.3E-08 57.3 14.1 120 146-284 75-214 (232)
10 2p5i_A BH3822 protein; PFAM030 97.1 0.0046 1.6E-07 57.1 12.3 121 146-283 89-247 (288)
11 2p0l_A Lipoate-protein ligase 96.8 0.0083 2.8E-07 55.5 10.9 122 146-284 86-247 (288)
12 2c8m_A Lipoate-protein ligase 96.7 0.028 9.6E-07 50.9 13.6 128 146-284 71-223 (262)
13 1vqz_A Lipoate-protein ligase, 96.6 0.021 7.1E-07 54.1 12.2 124 146-284 79-222 (341)
14 3a7r_A Lipoate-protein ligase 96.0 0.044 1.5E-06 51.7 11.1 123 146-284 69-212 (337)
15 2e5a_A Lipoyltransferase 1; li 95.9 0.032 1.1E-06 52.9 9.6 125 146-284 72-214 (347)
16 2ddz_A 190AA long hypothetical 79.5 6.6 0.00022 34.2 7.8 106 160-286 66-179 (190)
No 1
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=100.00 E-value=1.2e-51 Score=392.67 Aligned_cols=206 Identities=19% Similarity=0.300 Sum_probs=166.7
Q ss_pred CCCCCHHHHHhcccccccCCcEEEcccCCcHHHHHHHhcC-CCCcceEEEeCcccccccCCCCeeecCCC-CceeEEEee
Q 021912 91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQ 168 (305)
Q Consensus 91 ~~~fd~~~~~~~L~t~~~G~~i~~~~~v~STn~~~~~~~~-~~~~gtvviA~~QTaGRGR~gr~W~Sp~G-~L~fS~~l~ 168 (305)
+..++++++...|+|..+|+.++|+++++|||+++ +.+. +.++|+||+|++||+||||+||+|.||+| +||||++++
T Consensus 64 ~~~l~~~~i~~~l~~~~~g~~i~~~~~~~STn~~a-~~~~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~l~ 142 (323)
T 3rkx_A 64 PDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAA-KKSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLR 142 (323)
T ss_dssp CSSCCHHHHHHHHHTCSSCSEEEEEEEESCHHHHH-HHHTTTCCCCEEEEEEEEC------------CTTCEEEEEEEEC
T ss_pred cccCCHHHHHhhcccccCCceEEEEcCCCCHHHHH-HHHhcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEEEec
Confidence 46799999999999999999999999999999999 6543 57899999999999999999999999999 899999998
Q ss_pred cC-CCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeeeeeecCCce-EEEEeeccCCCCC
Q 021912 169 ME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKF-NVSIGIGLNVNNE 246 (305)
Q Consensus 169 ~~-~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE~~~~~~~~-~vvIGIGINvn~~ 246 (305)
++ ....++.+++++|+||++||++++ +++++||||||||++||||||||+|...+++.. ++||||||||+++
T Consensus 143 p~~~~~~~~~lsl~~avAv~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv~~~ 216 (323)
T 3rkx_A 143 PNVAFSMISKFNLFIALGIRDAIQHFS------QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQ 216 (323)
T ss_dssp CCCCTTSGGGHHHHHHHHHHHHHHTTC------SSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhc------CCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEecCC
Confidence 86 556788999999999999999874 368999999999999999999999998876654 6999999999983
Q ss_pred ---CccchHHH-HHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Q 021912 247 ---EPTTCLNA-VLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304 (305)
Q Consensus 247 ---~p~~sl~~-~~~~~~~~~~~i~r~eLla~il~~fe~~~~~~~~~gf~~l~~~Y~~~WlH 304 (305)
.|. .+.. +.+...+.+..++|++|++.++++|+.+|..|.+.||.+++++|+++|.|
T Consensus 217 ~~~~p~-~l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (323)
T 3rkx_A 217 LENFDE-SIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNI 277 (323)
T ss_dssp GGGSCT-TTGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSC
T ss_pred cccCCc-ccCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhh
Confidence 232 1111 11111234678999999999999999999999999999999999999876
No 2
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=100.00 E-value=1.1e-50 Score=370.59 Aligned_cols=183 Identities=28% Similarity=0.486 Sum_probs=163.2
Q ss_pred hcccccccCCcEEEcccCCcHHHHHHHhcCCCCcceEEEeCcccccccCCCCeeecCCCCceeEEEeecC-CCCCchhHH
Q 021912 101 NSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQ 179 (305)
Q Consensus 101 ~~L~t~~~G~~i~~~~~v~STn~~~~~~~~~~~~gtvviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~-~~~~l~~ls 179 (305)
..|+|..+|+.++|+++++|||++++++ +.++|++|+|++||+||||+||+|.||+|+||||++++++ +...+++++
T Consensus 2 ~~l~t~~~g~~i~~~~~~~STn~~~~~~--~~~~~~vv~A~~QtaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~ 79 (235)
T 2dxu_A 2 LGLKTSIIGRRVIYFQEITSTNEFAKTS--YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIV 79 (235)
T ss_dssp CCCCCSSTTSEEEEESSBSCHHHHHHHS--CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHH
T ss_pred CCcccccCCCeEEEECCCCCHHHHHHhc--CCCCCeEEEECccccCcCCCcCcccCCCCCeEEEEEeecCCCHHHHHHHH
Confidence 4678999999999999999999999987 6789999999999999999999999999999999999876 445678999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeeeeeecCCceEEEEeeccCCCCCCc--cchHHHHHH
Q 021912 180 YVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP--TTCLNAVLR 257 (305)
Q Consensus 180 ~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE~~~~~~~~~vvIGIGINvn~~~p--~~sl~~~~~ 257 (305)
+++|+||++||+++ | ++++||||||||++|+||||||+|. ....+||||||||++..| .+++...
T Consensus 80 l~~alAv~~al~~~----~---~~~~iKWPNDi~~~gkKl~GIL~E~----~~~~vViGiGiNv~~~~p~~atsL~~~-- 146 (235)
T 2dxu_A 80 FLGAVGVVETLKEF----S---IDGRIKWPNDVLVNYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGATSMKLE-- 146 (235)
T ss_dssp HHHHHHHHHHHHHT----T---CCCEEETTTEEEETTEEEEEEEEEE----CSSCEEEEEEECSSSCCCTTBCCHHHH--
T ss_pred HHHHHHHHHHHHHh----C---CCeeeeCCCEEEECCEEEEEEEEee----cCCEEEEEEEEEeCCCCCCchhhHHHh--
Confidence 99999999999986 2 5799999999999999999999998 234689999999998644 4566532
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcC
Q 021912 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWL 303 (305)
Q Consensus 258 ~~~~~~~~i~r~eLla~il~~fe~~~~~~~~~gf~~l~~~Y~~~Wl 303 (305)
.+..++|++|++.++++|+++|..|. +||++++++|+++|.
T Consensus 147 ----~~~~~~r~~ll~~ll~~l~~~~~~~~-~g~~~~~~~~~~~~~ 187 (235)
T 2dxu_A 147 ----LGSEVPLLSVFRSLITNLDRLYLNFL-KNPMDILNLVRDNMI 187 (235)
T ss_dssp ----HTSCCCHHHHHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHBC
T ss_pred ----hCCCCCHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhcc
Confidence 24579999999999999999999999 899999999999885
No 3
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=100.00 E-value=3.4e-50 Score=366.68 Aligned_cols=177 Identities=30% Similarity=0.533 Sum_probs=144.3
Q ss_pred CcEEEcccCCcHHHHHHHhcCCCCcceEEEeCcccccccCCCCeeecCCCCceeEEEeecCCCCCchhHHHHHHHHHHHH
Q 021912 110 RLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEA 189 (305)
Q Consensus 110 ~~i~~~~~v~STn~~~~~~~~~~~~gtvviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~a 189 (305)
..++|+++++|||+++++ .+.++|++|+|++||+||||+||+|+||+|+||||++++++....++++++++|+||++|
T Consensus 3 ~~i~~~~~~~STn~~~~~--~~~~~g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~lsl~~~lAv~~a 80 (233)
T 2eay_A 3 KNLIWLKEVDSTQERLKE--WNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPKEFENLLQLPLVLGLSVSEA 80 (233)
T ss_dssp CEEEEEEEBSCHHHHHHH--SCCCTTEEEEESCBCC------------CCEEEEEEEECTTTCCCTTHHHHHHHHHHHHH
T ss_pred ccEEEEcccCCHHHHHHh--cCCCCCeEEEECCcCCCCCCCCCeeeCCCCCcEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999998 567899999999999999999999999999999999998775567889999999999999
Q ss_pred HHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeeeeeecCCceEEEEeeccCCCC-CCc------cchHHHHHHhhhcC
Q 021912 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN-EEP------TTCLNAVLRKLSDS 262 (305)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE~~~~~~~~~vvIGIGINvn~-~~p------~~sl~~~~~~~~~~ 262 (305)
|++++ +++++||||||||++|+||||||+|...+.+ ||||||||++ +.| .+++... .
T Consensus 81 l~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~----ViGIGiNv~~~~~p~~~~~~atsL~~~------~ 144 (233)
T 2eay_A 81 LEEIT------EIPFSLKWPNDVYFQEKKVSGVLCELSKDKL----IVGIGINVNQREIPEEIKDRATTLYEI------T 144 (233)
T ss_dssp HHHHH------CCCCEEETTTEEEETTEEEEEEEEEEETTEE----EEEEEEECSCCCCCTTTTTTBCCHHHH------H
T ss_pred HHHhc------CCCccEeCcceEEECCeEEEEEEEEeecCCC----EEEEEEEcccccCcchhhhhhhhhHHh------H
Confidence 99975 2579999999999999999999999875432 8999999996 333 3455432 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Q 021912 263 TYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304 (305)
Q Consensus 263 ~~~i~r~eLla~il~~fe~~~~~~~~~gf~~l~~~Y~~~WlH 304 (305)
+..++|++|++.++++|+++|..|.++||++++++|+++|+|
T Consensus 145 ~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 186 (233)
T 2eay_A 145 GKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLY 186 (233)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHHBTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhcc
Confidence 467999999999999999999999999999999999999986
No 4
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=100.00 E-value=2.7e-49 Score=368.17 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=169.8
Q ss_pred CCCCCHHHHHhcc-cccccCCcEEEcccCCcHHHHHHHhcC-CC-CcceEEEeCcccccccCCCCeeecCCC-CceeEEE
Q 021912 91 QESFDVELFMNSL-ATNRFGRLLIWSPRLPSTHDVVSHNFC-EL-PVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFT 166 (305)
Q Consensus 91 ~~~fd~~~~~~~L-~t~~~G~~i~~~~~v~STn~~~~~~~~-~~-~~gtvviA~~QTaGRGR~gr~W~Sp~G-~L~fS~~ 166 (305)
.+.+|++.+...| .+...++.++++++++|||+++++++. +. ++|+||+|++||+||||+||.|.||+| +||||++
T Consensus 12 ~~~L~~~~i~~~l~~~~~~~~~i~~~~~~~STN~~~~~~~~~g~~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~ 91 (270)
T 3rux_A 12 RPPLDERSLRDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVG 91 (270)
T ss_dssp CCCCCHHHHHHHHSSTTCCCCEEEEEEEESCHHHHHHHHHHTTCCCBTEEEEEEEESSEECGGGCEECCCTTSEEEEEEE
T ss_pred CCCCCHHHHHHhhccccccCceEEEEccCCcHHHHHHHHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCCeEEEEE
Confidence 3569999999999 455667789999999999999998754 34 799999999999999999999999999 8999999
Q ss_pred eecC--CCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeeeeeecCCceEEEEeeccCCC
Q 021912 167 IQME--DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVN 244 (305)
Q Consensus 167 l~~~--~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE~~~~~~~~~vvIGIGINvn 244 (305)
++++ +...++++++++|+||++||+.++.. .+++++||||||||++|+||||||+|... ..+||||||||+
T Consensus 92 l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~---~~~~~~iKWPNDI~~~gkKl~GIL~E~~~----~~vViGIGiNv~ 164 (270)
T 3rux_A 92 VRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAV---PPAETGLKWPNDVLARGGKLAGILAEVAQ----PFVVLGVGLNVT 164 (270)
T ss_dssp EECTTSCGGGTHHHHHHHHHHHHHHHGGGSSS---CCSSCEEETTTEEEETTEEEEEEEEEEET----TEEEEEEEEESS
T ss_pred EccCCCChHHHHHHHHHHHHHHHHHHHHhccc---CCCceEEECCCeEEECCEEEEEEEEEeeC----CeEEEEEEEecc
Confidence 9986 33567899999999999999965421 24689999999999999999999999873 368999999999
Q ss_pred CCC------ccchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Q 021912 245 NEE------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304 (305)
Q Consensus 245 ~~~------p~~sl~~~~~~~~~~~~~i~r~eLla~il~~fe~~~~~~~~~gf~~l~~~Y~~~WlH 304 (305)
+.. +.+||.. ..+.. +|++|++.++++|+++|..|.++ |.+++++|+++|.|
T Consensus 165 ~~~~~~~~~~atSL~~------~~~~~-~r~~ll~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (270)
T 3rux_A 165 QAPEEVDPDATSLLDL------GVAAP-DRNRIASRLLRELEARIIQWRNA-NPQLAADYRARSLT 222 (270)
T ss_dssp CCHHHHCTTBCCTGGG------TCSSC-CHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHTBSS
T ss_pred CCccccCchhhccHHH------hcCCC-CHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHhcc
Confidence 752 2455532 22334 99999999999999999999887 99999999999986
No 5
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.6e-49 Score=360.04 Aligned_cols=176 Identities=23% Similarity=0.391 Sum_probs=152.5
Q ss_pred cEEEcccCCcHHHHHHHhcC-CCCcceEEEeCcccccccCCCCeeecCCCCceeEEEeecCCCCCchhHHHHHHHHHHHH
Q 021912 111 LLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEA 189 (305)
Q Consensus 111 ~i~~~~~v~STn~~~~~~~~-~~~~gtvviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~a 189 (305)
.++|+++++|||+++++++. +.+ |++|+|++||+||||+||+|+||+|+||||+++++.+... +++++++|+||++|
T Consensus 2 ~i~~~~~~~STn~~~~~~~~~~~~-g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~-~~l~l~~~lAv~~a 79 (237)
T 2ej9_A 2 EIIHLSEIDSTNDYAKELAKEGKR-NFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNP-KVINLLVPICIIEV 79 (237)
T ss_dssp EEEEESCBSCHHHHHHHHHHTTCC-SEEEEESCBSSCBCGGGCBCCCCTTSEEEEEEEETTSSCH-HHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCHHHHHHHHHhCCCC-CEEEEECccCCCCCCCCCeeeCCCCCeEEEeEEccccCCH-HHHHHHHHHHHHHH
Confidence 47899999999999998764 356 9999999999999999999999999999999998722222 88999999999999
Q ss_pred HHHhhhcCCCCCCcceeeecCcEEECC----EEEEEeeeeeeecCCceEEEEeeccCCCCCCc------cchHHHHHHhh
Q 021912 190 INYVCSRDGLPCLDIKIKWPNDLYLNG----IKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP------TTCLNAVLRKL 259 (305)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDIyv~g----kKigGILiE~~~~~~~~~vvIGIGINvn~~~p------~~sl~~~~~~~ 259 (305)
|++++ +++++||||||||++| +||||||+|+ ....+||||||||++..| .+++...
T Consensus 80 l~~~~------~~~~~iKWPNDi~~~g~~~~kKl~GIL~E~----~~~~vViGiGiNv~~~~p~~l~~~atsL~~~---- 145 (237)
T 2ej9_A 80 LKNYV------DKELGLKFPNDIMVKVNDNYKKLGGILTEL----TDDYMIIGIGINVNNQIRNEIREIAISLKEI---- 145 (237)
T ss_dssp HTTTC------CSCEEEETTTEEEEEETTEEEEEEEEEEEE----CSSEEEEEEEECSSSCCCGGGGGTBCCHHHH----
T ss_pred HHHhh------CCCcceeCCCEEEECCCcCccEeeEEEEec----CCCeEEEEEEEecCCCCcchhhhhhccHhHh----
Confidence 99864 3579999999999999 9999999998 235799999999998533 3444322
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHhcCC
Q 021912 260 SDSTYQFRREDVIAAFFNKFETFYDTFINQ--GFQTLEELYYKTWLH 304 (305)
Q Consensus 260 ~~~~~~i~r~eLla~il~~fe~~~~~~~~~--gf~~l~~~Y~~~WlH 304 (305)
.+..++|++|++.++++|+++|..|.++ ||.+++++|+++|+|
T Consensus 146 --~~~~~~r~~ll~~ll~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~ 190 (237)
T 2ej9_A 146 --TGKELDKVEILSNFLKTFESYLEKLKNKEIDDYEILKKYKKYSIT 190 (237)
T ss_dssp --HSSCCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHBSS
T ss_pred --HCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCc
Confidence 2457999999999999999999999988 999999999999986
No 6
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=100.00 E-value=2.2e-48 Score=369.11 Aligned_cols=203 Identities=25% Similarity=0.402 Sum_probs=157.8
Q ss_pred CCCCHHHHHhcccccccCCcEEEcccCCcHHHHHHHhcCCCCcceEEEeCcccccccCCCCeeecCCC-CceeEEEeecC
Q 021912 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQME 170 (305)
Q Consensus 92 ~~fd~~~~~~~L~t~~~G~~i~~~~~v~STn~~~~~~~~~~~~gtvviA~~QTaGRGR~gr~W~Sp~G-~L~fS~~l~~~ 170 (305)
..+++.++...+.+ ..++++++++|||+++++++...++|+||+|++||+||||+||+|+||+| +||||++++++
T Consensus 65 ~~L~~~eI~~~L~~----~~~~~~~~~~STn~~~~~~~~~~~~g~vv~A~~QtaGRGR~gr~W~Sp~g~~l~~S~~l~~~ 140 (321)
T 1bia_A 65 QLLNAKQILGQLDG----GSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLE 140 (321)
T ss_dssp CCCCHHHHHHTCCS----SCEEECSSBSCHHHHHHTTGGGCCTTCEEEESCBTTC---------CCTTSEEEEEEEEEEC
T ss_pred ccCCHHHHHHhcCC----ceEEEEEeeCChhHHHHHHHhcCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEEEccC
Confidence 56999999888865 56999999999999999887666689999999999999999999999999 79999999876
Q ss_pred -CCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeeeeeecCC-ceEEEEeeccCCCCCCc
Q 021912 171 -DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEP 248 (305)
Q Consensus 171 -~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE~~~~~~-~~~vvIGIGINvn~~~p 248 (305)
....++.+++++|+||++||+++ |. .+++||||||||++|+||||||+|...+.+ ...+||||||||++..+
T Consensus 141 ~~~~~~~~l~l~~~~av~~al~~~----~~--~~~~iKWPNDi~~~g~Kl~GIL~E~~~~~~~~~~~viGiGiNv~~~~~ 214 (321)
T 1bia_A 141 QGPAAAIGLSLVIGIVMAEVLRKL----GA--DKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRV 214 (321)
T ss_dssp C-CCCTHHHHHHHHHHHHHHHHHT----TC--TTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC---
T ss_pred CChHHHhhHHHHHHHHHHHHHHHh----CC--CCccEeCcceeeECCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCcc
Confidence 45567899999999999999986 22 269999999999999999999999987654 35799999999998532
Q ss_pred -cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Q 021912 249 -TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304 (305)
Q Consensus 249 -~~sl~~~~~~~~~~~~~i~r~eLla~il~~fe~~~~~~~~~gf~~l~~~Y~~~WlH 304 (305)
..++......+...+..++|++|++.++++|+++|..|.++||.+++++|+++|.|
T Consensus 215 ~~~~~~~~atsL~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 271 (321)
T 1bia_A 215 EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNF 271 (321)
T ss_dssp --------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHBTT
T ss_pred ccchhccccccHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhh
Confidence 11232221112223567999999999999999999999999999999999999886
No 7
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=100.00 E-value=2.9e-38 Score=287.81 Aligned_cols=170 Identities=11% Similarity=0.132 Sum_probs=141.4
Q ss_pred CcEEEcccCCcHHHHHHHhcC-CCCcceEEEeCcccccccCCCCeeecCCCCceeEEEeecC-CCCCchhHHHHHHHHHH
Q 021912 110 RLLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQYVASLALT 187 (305)
Q Consensus 110 ~~i~~~~~v~STn~~~~~~~~-~~~~gtvviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~-~~~~l~~ls~~~~lAV~ 187 (305)
..+.+.++++|||+++++.+. +.++|+||+|+ |.|+||||++++++ ....++++++++|+||+
T Consensus 12 ~~~~~l~~~~STN~~a~~~a~~g~~~g~vv~A~---------------~g~~L~~S~~l~~~~~~~~~~~lsl~~alAv~ 76 (235)
T 3bfm_A 12 MTGEAAGPGQDPFDLACQKAELGVDAGLVVYEL---------------GTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQ 76 (235)
T ss_dssp CEEEECCTTCCHHHHHHHHHHTTCCTTEEEEEE---------------CSSEEEEEEEECCSSCHHHHTTHHHHHHHHHH
T ss_pred cceeecCCCCCHHHHHHHHHhcCCCCCEEEEEc---------------CCCCEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 457889999999999998754 45789999999 34589999999876 33456789999999999
Q ss_pred HHHHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeeeeeec--CC-ceEEEEeeccCCCCCCc------cchHHHHHHh
Q 021912 188 EAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYR--TK-KFNVSIGIGLNVNNEEP------TTCLNAVLRK 258 (305)
Q Consensus 188 ~aL~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE~~~~--~~-~~~vvIGIGINvn~~~p------~~sl~~~~~~ 258 (305)
+||++++. ++.+++||||||||++|||+||||+|...+ ++ ..++||||||||++..| .+++.
T Consensus 77 ~aL~~~~~----~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~~~vViGIGiNv~~~~~~~~~~~atsL~----- 147 (235)
T 3bfm_A 77 NALGALAP----PEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALY----- 147 (235)
T ss_dssp HHHHHHSC----TTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSSCCCCCSCCGG-----
T ss_pred HHHHHhcC----CCcceEecCCCeEEECCeEEEEEEEEeeccCCCCCccEEEEEEEEEcCCCCcccccccccchh-----
Confidence 99998752 122399999999999999999999999874 33 34799999999998643 23442
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Q 021912 259 LSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLH 304 (305)
Q Consensus 259 ~~~~~~~i~r~eLla~il~~fe~~~~~~~~~gf~~l~~~Y~~~WlH 304 (305)
...+..++|++|++.++++|+++|..|.+.||++++++|+++|.|
T Consensus 148 -~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 192 (235)
T 3bfm_A 148 -AEGCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHG 192 (235)
T ss_dssp -GTTCTTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHBTT
T ss_pred -HhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhh
Confidence 223568999999999999999999999999999999999999986
No 8
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=98.38 E-value=5.4e-06 Score=75.12 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=78.9
Q ss_pred cccCCCCeeecCCCCc-eeEEEeecCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCccee-eecCcEEECCEEEEEee
Q 021912 146 GRGRSKNAWESPKGCL-MFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI-KWPNDLYLNGIKVGGIL 223 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L-~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~I-KWPNDIyv~gkKigGIL 223 (305)
.|-|+|..-.--+|++ .++++ .... .....--...-+|.++++++ | ++... ++.|||+++|+|||||-
T Consensus 92 rr~rGGgavyH~pGqlv~Y~i~-~~~~--~~~~~~~~l~~~ii~~L~~l----G---i~a~~~~g~~dv~v~grKIag~g 161 (237)
T 2qhs_A 92 WVERGGDVTYHGPGQLVGYPIF-PVGR--EVRRFLRQIEEAIVRVAAGY----G---ISAYPTPGYAGVWVGEDKLCAIG 161 (237)
T ss_dssp ECCSSSSEEEECTTEEEEEEEC-CCTT--CHHHHHHHHHHHHHHHHHHT----T---CCCBCCSSSSSEEETTEEEEEEE
T ss_pred EEcCCCEEEEECCCCEEEEEEE-ECCc--CHHHHHHHHHHHHHHHHHHc----C---CcEEEeCCCCCEEECCcEEEEEe
Confidence 5678888888888886 44444 3322 11111112345667777654 5 45666 68999999999999999
Q ss_pred eeeeecCCceEEEEeeccCCCCCC--------------ccchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 021912 224 CTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (305)
Q Consensus 224 iE~~~~~~~~~vvIGIGINvn~~~--------------p~~sl~~~~~~~~~~~~~i~r~eLla~il~~fe~~~~ 284 (305)
+... .+ .+.-|+.||++.+. ..+++.+.+ +..++.+++...+++.|.+.|.
T Consensus 162 ~~~~--~~--~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l------~~~~~~~ev~~~l~~~f~~~~~ 226 (237)
T 2qhs_A 162 VAVK--EG--VSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLL------GRKVPMEEAKARVVAAFAEVFG 226 (237)
T ss_dssp EEEE--TT--EEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHH------TSCCCHHHHHHHHHHHHHHHHT
T ss_pred EEee--CC--eEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhh------CCCCCHHHHHHHHHHHHHHHhC
Confidence 8732 22 35579999998641 234554322 4578999999999999988763
No 9
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=97.43 E-value=0.0027 Score=57.29 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=79.8
Q ss_pred cccCCCCeeecCCCCceeEEEeecCCCCCchhHHH--HHHHHHHHHHHHhhhcCCCCCCcceeee-cCcEEEC---CEEE
Q 021912 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQY--VASLALTEAINYVCSRDGLPCLDIKIKW-PNDLYLN---GIKV 219 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~--~~~lAV~~aL~~~~~~~G~~~~~v~IKW-PNDIyv~---gkKi 219 (305)
.|.|+|..-.--+|++.+.+++.... ......+ ...-+|.++|+++ | ++...+= .|||+++ |+||
T Consensus 75 r~~rGG~~tYHgPGQlv~Y~Il~l~~--~~~v~~~v~~le~~vI~~L~~~----G---i~a~~~~g~~gV~v~~~~~rKI 145 (232)
T 1w66_A 75 DTDRGGKITWHGPGQLVGYPIIGLAE--PLDVVNYVRRLEESLIQVCADL----G---LHAGRVDGRSGVWLPGRPARKV 145 (232)
T ss_dssp ECSSSSSEEEECTTEEEEEEECBBCS--SCCHHHHHHHHHHHHHHHHHHT----T---CCCEEETTEEEEEECSSSCEEE
T ss_pred EecCCCceEEECCCCeEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHc----C---CCeEecCCCCeEEecCCCCCEE
Confidence 57888888888889988888876543 2222222 2345667777654 4 4555542 4899999 9999
Q ss_pred EEeeeeeeecCCceEEEEeeccCCCCCC-------c-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 021912 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (305)
Q Consensus 220 gGILiE~~~~~~~~~vvIGIGINvn~~~-------p-------~~sl~~~~~~~~~~~~~i~r~eLla~il~~fe~~~~ 284 (305)
|||=+-.. .+ ...=|+-+|++++. | .+|+.+. .+..++.+++...+.++|.+.+.
T Consensus 146 aaig~r~~--~~--vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~------lg~~~~~~ev~~~l~~~f~~~~~ 214 (232)
T 1w66_A 146 AAIGVRVS--RA--TTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAE------LGRTVTVDEVRATVAAAVCAALD 214 (232)
T ss_dssp EEEEEEEE--TT--EEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHH------HTSCCCHHHHHHHHHHHHHHHHT
T ss_pred EEeeeeee--CC--EEEcceEEecCcChHHhcCccccccCCCceeeeHHH------hCCCCCHHHHHHHHHHHHHHHhC
Confidence 99877422 22 23378888998741 1 2445422 14578999999999999988764
No 10
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=97.12 E-value=0.0046 Score=57.11 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=70.0
Q ss_pred cccCCCCeeecCCCCceeEEEeecCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCccee--------eecCcEEECCE
Q 021912 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLNGI 217 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~I--------KWPNDIyv~gk 217 (305)
.|-|+|+.=...+|++.||++.+......+-..--...-.|.+++++ +| +++.. .=.|||.++|+
T Consensus 89 RR~sGGgaVyHdpG~l~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~----lG---i~a~~~~~~~~~c~g~~dl~v~gr 161 (288)
T 2p5i_A 89 VRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQD----HR---EQIEAREIVGSYCPGSYDLSIDGK 161 (288)
T ss_dssp EESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC----------CCCEECCCTTSSSCCTTCEEETTE
T ss_pred EEcCCCceEEECCCcEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHH----cC---CcEEEeccccCCCCCCccEEECCE
Confidence 56778887777788999999975431111111111233445555544 34 23333 22599999999
Q ss_pred EEEEeeeeeeecCCceEEEEeeccCCCCCCcc------------------------------chHHHHHHhhhcCCCCCC
Q 021912 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT------------------------------TCLNAVLRKLSDSTYQFR 267 (305)
Q Consensus 218 KigGILiE~~~~~~~~~vvIGIGINvn~~~p~------------------------------~sl~~~~~~~~~~~~~i~ 267 (305)
||||+=.-.. .+ .+..|+-||++.+... ++|.+. .+..++
T Consensus 162 KI~G~Aqr~~--~~--~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~------l~~~~~ 231 (288)
T 2p5i_A 162 KFAGISQRRI--RG--GVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSEL------LGQPHN 231 (288)
T ss_dssp EEEEEEEEEE--TT--EEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHH------HTSCCC
T ss_pred EEEEEEEEEe--CC--EEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHH------cCCCCC
Confidence 9999854432 11 3456777888754210 111111 133688
Q ss_pred HHHHHHHHHHHHHHHH
Q 021912 268 REDVIAAFFNKFETFY 283 (305)
Q Consensus 268 r~eLla~il~~fe~~~ 283 (305)
.+++...+.+.|.+.+
T Consensus 232 ~~~v~~~l~~~f~~~~ 247 (288)
T 2p5i_A 232 VSDVLLKALMTLQQHG 247 (288)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999888754
No 11
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=96.78 E-value=0.0083 Score=55.45 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=71.0
Q ss_pred cccCCCCeeecCCCCceeEEEeecCCCCCchhHH-H-HHHHHHHHHHHHhhhcCCCCCCccee--------eecCcEEEC
Q 021912 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQ-Y-VASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLN 215 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls-~-~~~lAV~~aL~~~~~~~G~~~~~v~I--------KWPNDIyv~ 215 (305)
.|-|+|..=.-.+|++.||++.+.........-. + ...-.|.++|++ +| +++.. .=.|||.++
T Consensus 86 RR~sGGgaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~----lG---i~a~~~~~~~~~c~g~~Dl~v~ 158 (288)
T 2p0l_A 86 VRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD----FY---QPIEHFEVETSYCPGKFDLSIN 158 (288)
T ss_dssp ECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT----SC---SCCEECCCTTSSSCCTTCEEET
T ss_pred EEcCCCCeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHH----cC---CcEEEccccCCCCCCCccEEEC
Confidence 5667777777778899999997643111111111 1 233444555443 45 23333 225999999
Q ss_pred CEEEEEeeeeeeecCCceEEEEeeccCCCCCCcc------------------------------chHHHHHHhhhcCCCC
Q 021912 216 GIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT------------------------------TCLNAVLRKLSDSTYQ 265 (305)
Q Consensus 216 gkKigGILiE~~~~~~~~~vvIGIGINvn~~~p~------------------------------~sl~~~~~~~~~~~~~ 265 (305)
|+||||+=.-.. .+ .+..|+=||++.+... ++|.+. .+..
T Consensus 159 grKI~G~Aqr~~--~~--~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~------l~~~ 228 (288)
T 2p0l_A 159 GKKFAGLAQRRI--KN--GIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDL------LDCP 228 (288)
T ss_dssp TEEEEEEEEEEE--TT--EEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHH------TTCC
T ss_pred CEEEEEEeEEEe--CC--EEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHH------cCCC
Confidence 999999854432 11 3456777888754210 111111 1235
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 021912 266 FRREDVIAAFFNKFETFYD 284 (305)
Q Consensus 266 i~r~eLla~il~~fe~~~~ 284 (305)
++.+++...+.+.|.+.|.
T Consensus 229 ~~~~~v~~~l~~~f~~~~~ 247 (288)
T 2p0l_A 229 MTVEDVIDRMLISLKQVGF 247 (288)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 8899999999998887764
No 12
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=96.69 E-value=0.028 Score=50.95 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=73.5
Q ss_pred cccCCCCeeecCCCCceeEEEeecCCCCCch-hHHHHHHHHHHHHHHHhhhcCCCC-------CCcceeeecCcEEECCE
Q 021912 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVP-LLQYVASLALTEAINYVCSRDGLP-------CLDIKIKWPNDLYLNGI 217 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~-~ls~~~~lAV~~aL~~~~~~~G~~-------~~~v~IKWPNDIyv~gk 217 (305)
.|-|+|..=...+|+|.+|++.+.... ... ... ...-.|.++++++ |.+ ..+....=.|||+++|+
T Consensus 71 rR~sGGgavyhd~G~l~ys~i~~~~~~-~~~~~y~-~l~~~ii~~l~~l----Gi~~~~~~~~~~~a~~~g~~dv~v~g~ 144 (262)
T 2c8m_A 71 RRYTGGGAVYHDLGDLNFSVVRSSDDM-DITSMFR-TMNEAVVNSLRIL----GLDARPGELNDVSIPVNKKTDIMAGEK 144 (262)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECSSC-CHHHHHH-HHHHHHHHHHHHT----TCCCEECCBCCTTSSSSBTTSEEETTE
T ss_pred EECCCCceEEeCCCcEEEEEEEcCCCC-CHHHHHH-HHHHHHHHHHHHc----CCCcccccccCCcceECCcCcEEECCe
Confidence 456667666666699999999764321 111 122 2455566666654 431 00334444699999999
Q ss_pred EEEEeeeeeeecCCceEEEEeeccCCCCCC--------ccch-HHHH--------HHhhhcCCCCCCHHHHHHHHHHHHH
Q 021912 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------PTTC-LNAV--------LRKLSDSTYQFRREDVIAAFFNKFE 280 (305)
Q Consensus 218 KigGILiE~~~~~~~~~vvIGIGINvn~~~--------p~~s-l~~~--------~~~~~~~~~~i~r~eLla~il~~fe 280 (305)
||||+=.-.. . -.+..|.-||++.+. +..| +... ...+.+.. .++.+++...+.+.|.
T Consensus 145 Ki~G~aqr~~--~--~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~ 219 (262)
T 2c8m_A 145 KIMGAAGAMR--K--GAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFS 219 (262)
T ss_dssp EEEEEEEEEE--T--TEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHH
T ss_pred EEEEeeeEEe--C--CEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHH
Confidence 9999854432 1 235677778887541 0001 1000 00011112 5889999999999998
Q ss_pred HHHH
Q 021912 281 TFYD 284 (305)
Q Consensus 281 ~~~~ 284 (305)
+.+.
T Consensus 220 ~~~~ 223 (262)
T 2c8m_A 220 ETLH 223 (262)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8774
No 13
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=96.57 E-value=0.021 Score=54.15 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=76.2
Q ss_pred cccCCCCeeecCCCCceeEEEeecCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeee
Q 021912 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCT 225 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE 225 (305)
.|-|+|..=...+|++.||++.+........ .. ...-.|.++|+++ | +++.+.=.|||+++|+||||+=.-
T Consensus 79 RR~sGGgaVyHd~G~l~ys~i~~~~~~~~~~-y~-~l~~~ii~aL~~l----G---i~a~~~gr~Di~v~grKIsG~Aqr 149 (341)
T 1vqz_A 79 RRISGGGAVYHDLNNLNYTIISKEDENKAFD-FK-SFSTPVINTLAQL----G---VKAEFTGRNDLEIDGKKFCGNAQA 149 (341)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECCTTCCCS-HH-HHHHHHHHHHHHT----T---CCEEEETTTEEEETTEEEEEEEEE
T ss_pred EECCCCCeEEECCCceEEEEEEcCcccCCcc-HH-HHHHHHHHHHHHc----C---CeEEECCCCCEEEeCEEEEEEEEE
Confidence 5667777777778899999987543210111 22 2356677777654 4 466666679999999999998544
Q ss_pred eeecCCceEEEEeeccCCCCCCccchHHHHH-------------------Hhhhc-CCCCCCHHHHHHHHHHHHHHHHH
Q 021912 226 STYRTKKFNVSIGIGLNVNNEEPTTCLNAVL-------------------RKLSD-STYQFRREDVIAAFFNKFETFYD 284 (305)
Q Consensus 226 ~~~~~~~~~vvIGIGINvn~~~p~~sl~~~~-------------------~~~~~-~~~~i~r~eLla~il~~fe~~~~ 284 (305)
.. .+ .+..|.-||++.+.. .+...+ ..+.+ .+..++.+++...+.+.|.+.+.
T Consensus 150 ~~--~~--~~lhhgtllvd~Dl~--~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~ 222 (341)
T 1vqz_A 150 YI--NG--RIMHHGCLLFDVDLS--VLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP 222 (341)
T ss_dssp EE--TT--EEEEEEEEESSCCTT--HHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCT
T ss_pred EE--CC--EEEEEEEEEecCCHH--HHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 32 11 345676677764310 010000 00111 12368999999999999988763
No 14
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=96.00 E-value=0.044 Score=51.65 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=74.8
Q ss_pred cccCCCCeeecCCCCceeEEEeecCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEE---CC-EEEEE
Q 021912 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL---NG-IKVGG 221 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv---~g-kKigG 221 (305)
.|-|+|..=...+|++.||++.+... ... . ...-.|.++++++ | +++.+.=.|||++ +| +||||
T Consensus 69 RR~sGGgaVyHd~G~l~ys~i~~~~~---~~y-~-~l~~~ii~~L~~l----G---i~a~~~g~~di~v~~~~g~rKIsG 136 (337)
T 3a7r_A 69 RRSSGGGAVFHDLGNTCFTFMAGKPE---YDK-T-ISTSIVLNALNAL----G---VSAEASGRNDLVVKTVEGDRKVSG 136 (337)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEETTT---CCH-H-HHHHHHHHHHHHT----T---CCEEEETTTEEEECCTTSCEEEEE
T ss_pred EEcCCCccEEECCCcEEEEEEECCcc---cCH-H-HHHHHHHHHHHHc----C---CeEEECCCCcEEEEeCCCceEEEE
Confidence 56677777777789999999875432 112 2 2455666777654 4 4566666799999 89 99999
Q ss_pred eeeeeeecCCceEEEEeeccCCCCCC----------cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 021912 222 ILCTSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (305)
Q Consensus 222 ILiE~~~~~~~~~vvIGIGINvn~~~----------p~-------~sl~~~~~~~~~~~~~i~r~eLla~il~~fe~~~~ 284 (305)
+=.-.. . -.+.-|.-||++.+. |. +++......+.+....++.+++...+++.|.+.|.
T Consensus 137 ~Aqr~~--~--~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~ 212 (337)
T 3a7r_A 137 SAYRET--K--DRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (337)
T ss_dssp EEEEEC--S--SEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEE--C--CEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcC
Confidence 844322 1 234567667776431 10 00000000011112348899999999999988764
No 15
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=95.90 E-value=0.032 Score=52.90 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=71.6
Q ss_pred cccCCCCeeecCCCCceeEEEeecCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEECC-EEEEEeee
Q 021912 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILC 224 (305)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv~g-kKigGILi 224 (305)
.|-|+|..=...+|++.||++.+... .... ...-.|.++++++ |. ++++...=.|||+++| +||||+=.
T Consensus 72 RR~sGGgaVyHd~G~l~ys~i~~~~~---~~~~--~~~~~ii~~L~~l----G~-~i~a~~~g~~di~v~g~~KIsG~Aq 141 (347)
T 2e5a_A 72 RRRSGGGTVYHDMGNINLTFFTTKKK---YDRM--ENLKLVVRALKAV----HP-HLDVQATKRFDLLLDGQFKISGTAS 141 (347)
T ss_dssp ECSSCSCCEEECTTEEEEEEEECGGG---CCHH--HHHHHHHHHHHHH----ST-TCCEEECTTSCEEETTTEEEECEEE
T ss_pred EECCCCCcEEECCCcEEEEEEecccc---CCHH--HHHHHHHHHHHHh----CC-ceEEEECCCCcEEECCCcEEEEEeE
Confidence 55677777777788899999874322 1221 2355667777765 31 2456666569999998 99999833
Q ss_pred eeeecCCceEEEEeeccCCCCCC----------c-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 021912 225 TSTYRTKKFNVSIGIGLNVNNEE----------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (305)
Q Consensus 225 E~~~~~~~~~vvIGIGINvn~~~----------p-------~~sl~~~~~~~~~~~~~i~r~eLla~il~~fe~~~~ 284 (305)
.... + .+.-+.-||++.+. | .+++...+..+.+-.+.++.+++...+++.|.+.|.
T Consensus 142 -~~~~-~--~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~ 214 (347)
T 2e5a_A 142 -KIGR-N--AAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQ 214 (347)
T ss_dssp -EECS-S--CEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -EeeC-C--eEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 2221 2 12334445554320 1 011110000000012358899999999999988875
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=79.49 E-value=6.6 Score=34.17 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=59.2
Q ss_pred CceeEEEee-cCCCC--CchhHHHHHHHHHHHHHHHhhhcCCCCCCcceeeecCcEEECCEEEEEeeeeeeecCCceEEE
Q 021912 160 CLMFSFTIQ-MEDGR--VVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVS 236 (305)
Q Consensus 160 ~L~fS~~l~-~~~~~--~l~~ls~~~~lAV~~aL~~~~~~~G~~~~~v~IKWPNDIyv~gkKigGILiE~~~~~~~~~vv 236 (305)
.-|.-|++. ++.+. .....|-+...-+.+.|++ +| +++ .+=-.|||++|+|+.=-...... ...-
T Consensus 66 ~dmlhFIvEhFD~~dl~~~y~rQRLlv~i~kE~L~~----~g---~~~-~R~GDDLy~~~~KLSVSIAt~s~----vS~k 133 (190)
T 2ddz_A 66 DDMVHYILELFWHPDILLASSLQKLLIARLVELLWN----YG---IEA-SRRGDDIYVNGRKLSISIATVSP----VSIK 133 (190)
T ss_dssp EEEEEEEEEECSCCCHHHHHHHHHHHHHHHHHHHHT----TT---CCE-EEETTEEEETTEECEEEEEEECS----SCEE
T ss_pred ccceEEEEeeCCCccHHHHHHHHHHHHHHHHHHHHH----cC---Cee-eeccCeeeECCCEEEEEEEecCc----chhe
Confidence 356677774 33211 1223454444445555553 34 222 34589999999999633333222 1234
Q ss_pred EeeccCCCCC-C----ccchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021912 237 IGIGLNVNNE-E----PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTF 286 (305)
Q Consensus 237 IGIGINvn~~-~----p~~sl~~~~~~~~~~~~~i~r~eLla~il~~fe~~~~~~ 286 (305)
|=+||||... . |+..|.+. + ++..++...+..++.+-++..
T Consensus 134 IH~GiNV~s~g~P~~V~aigL~dl-------G--i~i~~~~~~i~~~y~~E~~~I 179 (190)
T 2ddz_A 134 IHIGLNVKTVGVPPGVDAIGLEEL-------G--IDPTEFMERSAKALVEEIEKV 179 (190)
T ss_dssp EEEEEESCCSSCCSSSCBCCHHHH-------T--CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccCCCCCccccCHHHc-------C--CCHHHHHHHHHHHHHHHHHHH
Confidence 6778899763 2 34456543 2 377888887777766655443
Done!