RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021913
(305 letters)
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 197
Score = 133 bits (337), Expect = 2e-38
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 185 EGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIAR 244
L + ++ + + + E E+ K+R+ GTGRRKC+IAR
Sbjct: 25 FSLSNPAVVKPLVITATSATAPVEVAETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIAR 84
Query: 245 VWIQPGDGKFIVNDKEFDVYFPMLD-HRAALLRPFSETKTLGLWDVDCTVKGGGVSG 300
V +Q G GKFI+N ++ Y + P + +DV GGG+SG
Sbjct: 85 VVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSG 141
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_I 3fih_I* 3iy8_I 2wwl_I 3oar_I 3oaq_I
3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I
2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I ...
Length = 127
Score = 115 bits (290), Expect = 3e-32
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVD 290
+ YGTGRRK S ARV+I+PG+GK ++N + + YF R + +P + D+
Sbjct: 2 QYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLY 61
Query: 291 CTVKGGGVSG 300
TVKGGG+SG
Sbjct: 62 ITVKGGGISG 71
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1
PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I*
1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I
1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I
...
Length = 128
Score = 112 bits (284), Expect = 3e-31
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
YGTGRRK ++ARV+++PG+GK VN ++F+ YF L A L P LG +D T
Sbjct: 5 YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 64
Query: 293 VKGGGVSG 300
V+GGG SG
Sbjct: 65 VRGGGKSG 72
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 146
Score = 96.9 bits (242), Expect = 4e-25
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 227 DEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--L 284
GR+K + A + G+G VN + ++ P + LL P
Sbjct: 5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEP-RTLQYKLLEPVLLLGKERF 63
Query: 285 GLWDVDCTVKGGGVSG 300
D+ VKGGG
Sbjct: 64 AGVDIRVRVKGGGHVA 79
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 149
Score = 96.2 bits (240), Expect = 1e-24
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 221 ARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSE 280
A G GR+K ++A + +PG G VN ++ P + R P
Sbjct: 2 AAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEM-LRLKAFEPILL 60
Query: 281 TKT--LGLWDVDCTVKGGGVSG 300
D+ V+GGG +
Sbjct: 61 AGRSRFKDIDMRIRVRGGGKTS 82
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_I
Length = 145
Score = 91.9 bits (229), Expect = 4e-23
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFS--ETKTLGLWDVD 290
GR+K ++A ++PG G VN D+ P + +A + P + D+
Sbjct: 10 QTFGRKKNAVAVASVRPGKGLLKVNGSPIDMINPQI-LQAKIYEPILLLGQQKFANLDIR 68
Query: 291 CTVKGGGVSG 300
V+G G +
Sbjct: 69 IRVRGSGYTS 78
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I
3jyv_I*
Length = 143
Score = 88.8 bits (221), Expect = 4e-22
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPF--SETKTLGLWDVD 290
G++K + A ++ G G VN + P + R + P D+
Sbjct: 8 QTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEI-LRFKVYEPLLLVGLDKFSNIDIR 66
Query: 291 CTVKGGGVSG 300
V GGG
Sbjct: 67 VRVTGGGHVS 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 41/298 (13%), Positives = 91/298 (30%), Gaps = 63/298 (21%)
Query: 27 QNPGVPPLISFSRFFSSNNNSNDNNQSSSNVWNLSREIDGKFDQLFGDTEAKDVGQDELF 86
+ V + F F+ + N N + L +ID + + + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 87 NAEEN--QSWSFEEG------VKDGSFEIGESAGTFDE------TGRESGEADEESKEEL 132
+S +E V++ ++ F+ T R D L
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTTRFKQVTD-----FL 281
Query: 133 SEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIAL------KDL--EGV 184
S + L+ +T ++SL+ +DL E +
Sbjct: 282 SAATTTHISLDHHS------------------MTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 185 EGLP-PLSEI-EEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVD--EKGRAYGTGRRKC 240
P LS I E +R T + + + K + ++ + ++ E + + +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMF----DRL 378
Query: 241 SIAR--VWIQPGDGKFIVNDKEFDVYFPMLD--HRAALLRPFSETKTLGLWDVDCTVK 294
S+ I I D +++ H+ +L+ + T+ + + +K
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Score = 35.2 bits (80), Expect = 0.027
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 35/152 (23%)
Query: 148 TAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPP--LS--EIEEMRYEKNTR 203
T E Q + D++ ++ + D + V+ +P LS EI+ + K+
Sbjct: 11 TGEHQ---YQYKDIL------SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 204 KSTRA--EIERQKQEEVAKARVRQVDEKGRAYG--------TGRRKCSIARVWIQPGDGK 253
T KQEE+ + V +V Y R+ + R++I+ D
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 254 FIVNDKE-FDVYF-----PMLDHRAAL--LRP 277
+ ND + F Y P L R AL LRP
Sbjct: 120 Y--NDNQVFAKYNVSRLQPYLKLRQALLELRP 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 62/356 (17%), Positives = 109/356 (30%), Gaps = 121/356 (33%)
Query: 2 LARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNNSNDNNQSSSNVWNLS 61
LA LL+ + L+ I ++ +R + + +S+S ++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYIT-----------ARIMA---KRPFDKKSNSALFRAV 149
Query: 62 REIDGKFDQLFGDTEAKDVGQ-------DEL---FNAEENQSWSFEEGVKDGSFEIGESA 111
E + + +FG GQ +EL + ++ V D I SA
Sbjct: 150 GEGNAQLVAIFG-------GQGNTDDYFEELRDLYQ-------TYHVLVGD--L-IKFSA 192
Query: 112 GTFDETGRESGEADE------------ESKEELSEEE----------------------- 136
T E R + +A++ E+ +++
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 137 LRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAM-LESL--IALKDLE-----GVEG-- 186
++L +L + L+G + L+ A I + ES K + GV
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 187 ------LPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKC 240
LPP S +E+ S I QE+V V + ++ ++
Sbjct: 313 AYPNTSLPP-SILEDSLENNEGVPSPMLSISNLTQEQVQD-YVNKT----NSHLPAGKQV 366
Query: 241 SIARVWIQPGDGKFIVNDKEFDVYFPM-LDHRAALLR-------------PFSETK 282
I+ V G +V+ P L LR PFSE K
Sbjct: 367 EISLV---NGAKNLVVSG------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 28.5 bits (63), Expect = 3.4
Identities = 34/216 (15%), Positives = 65/216 (30%), Gaps = 65/216 (30%)
Query: 92 QSWSFEEGVKDGSFEIGESAGTFDETGRESGEADEESKEELSEEEL--RMLQLEEKQLTA 149
S+ +++ F E DE + + EL + L +
Sbjct: 25 ASFFIASQLQE-QF-----NKILPEPTEGFAADDEPT----TPAELVGKFL-----GYVS 69
Query: 150 ELQGPSRAFGDLIAASGITDAMLESLIALKD-----LEG------VEGLPPLSEIEEMRY 198
L PS+ G D +L + L + LEG L ++ ++
Sbjct: 70 SLVEPSKV--------GQFDQVLN--LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 199 EKNTRK--STRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQ-PGDGKFI 255
++ + + R +R ++ A R V E A++ G G
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGN------------AQLVAIFGGQG--N 165
Query: 256 VND--KE----FDVYFPMLD---HRAA-LLRPFSET 281
+D +E + Y ++ +A L T
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.76
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 193 IEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRK 239
I + R E+ R + ++E + + ++E + K
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Score = 27.8 bits (61), Expect = 3.5
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 192 EIEEMRYEKNTRKSTRAEIE-----RQKQEEVAKARVRQVDEK 229
+ E+ R+ + ++E + +Q E K R D+
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.8 bits (67), Expect = 1.3
Identities = 33/194 (17%), Positives = 79/194 (40%), Gaps = 14/194 (7%)
Query: 49 DNNQSSSNVWNLSREIDGKFDQLFGDTEAKDVGQDELFNAEENQSWSFEEGVKDGSFEIG 108
+ + + + +I DQ T+ + + ++ + + N + EE K+ +
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA-EEEEKAKNLTKLKN 1035
Query: 109 ESAGTFDETGRESGEADEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGIT 168
+ E + +E+S++EL E+ R L+ E L ++ +L A
Sbjct: 1036 KHESMISEL-EVRLKKEEKSRQEL-EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 169 DAMLESLIALKDLEGVEGLPPL-------SEIEEMRYEKNTRKSTRAEIERQK---QEEV 218
+ L++ +A + E + L S I +++ + + K+ R + E+QK EE+
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 219 AKARVRQVDEKGRA 232
+ ++++
Sbjct: 1154 EALK-TELEDTLDT 1166
Score = 29.4 bits (66), Expect = 1.7
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 123 EADEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLE 182
E +EE ++L + E + +Q + L +L+ A L D ++ + D+
Sbjct: 937 EEEEERSQQL-QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM--EDDIL 993
Query: 183 GVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKAR 222
+E + ++ E+ + +++ EE KA+
Sbjct: 994 IME-----DQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A
{Saccharomyces cerevisiae}
Length = 95
Score = 27.0 bits (59), Expect = 2.7
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 109 ESAGTFDETGRESGEADEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGIT 168
+S ++E + E K + +E LQ + QL +LQ + L++
Sbjct: 17 DSERIYNEYVQSQYEFASLDKPKKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQ 76
Query: 169 DAMLES 174
A+ +S
Sbjct: 77 KALYQS 82
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown
function, PSI, protein structure initiative; 2.50A
{Bacillus subtilis} SCOP: c.116.1.3
Length = 167
Score = 27.5 bits (62), Expect = 4.0
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 192 EIEEMRYEKNTRKSTRAEIERQKQEEVAK--------ARVRQVDEKGRAYGT 235
+I E+ EK + +++ K +E + A V + +G+ +
Sbjct: 34 DIIELPDEKAPENLSDQDMKIIKDKEGDRILSKISPDAHVIALAIEGKMKTS 85
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 27.8 bits (63), Expect = 4.5
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 20/114 (17%)
Query: 116 ETGRESGEADEE------SKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITD 169
+ GRE G EE E E+ + E + S + L+ + D
Sbjct: 477 KLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLD 536
Query: 170 AMLESLIALKDLEGVEGLPPLSEIE-EMRYEKNTRKSTRAEIERQKQEEVAKAR 222
+ E E+E +++YE IER+ ++ K +
Sbjct: 537 DVKEKFGYEVPQHPYV----KEEVEIQLKYE--------PYIERE-RKLNEKLK 577
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta
methyltransferase rossmann fold, rRNA methylation rRNA,
ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus
aureus} PDB: 1vh0_A
Length = 163
Score = 27.1 bits (61), Expect = 4.8
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 192 EIEEMRYEKNTRKSTRAEIERQKQEEVAK--------ARVRQVDEKGRAYGT 235
+I E+ EK + EIE+ K++E + + V ++ +G+ +
Sbjct: 38 DIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSS 89
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 27.7 bits (62), Expect = 5.5
Identities = 15/61 (24%), Positives = 23/61 (37%)
Query: 112 GTFDETGRESGEADEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAM 171
G F G E E + K + R+ + + K + Q + A G +I I D
Sbjct: 230 GAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIF 289
Query: 172 L 172
L
Sbjct: 290 L 290
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 27.3 bits (61), Expect = 8.0
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 127 ESKEELSEEELRMLQLEE-KQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDL 181
E E S +EL+ LQLE K + A+G+ L+SL L
Sbjct: 15 EPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLAKF 70
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 26.4 bits (57), Expect = 8.8
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 76 EAKDVGQDELFNAEENQSWSFEEGVKDGSFEIGESAGTFDETGRESGEADEESKEELSEE 135
+ K + AE++ + EE +G + E+ ++ + + D++ ++E EE
Sbjct: 12 QLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEE 71
Query: 136 EL 137
E+
Sbjct: 72 EV 73
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 27.0 bits (60), Expect = 9.6
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 118 GRESGEADEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAM 171
+ +E + E L + LT + + G ++ + G + +
Sbjct: 31 EAHDAQRVQEVFAWTTTAEYEALNFRREALTVDPAKACQPLGAVLCSLGFANTL 84
>4en6_B Hemagglutinin components HA-22/23/53; carbohydrate/sugar binding,
sugar binding protein; HET: SIA GAL BGC; 2.56A
{Clostridium botulinum} PDB: 2zoe_B* 2zs6_B 2z5a_B*
4en7_B* 4en8_B* 4en9_B*
Length = 420
Score = 26.7 bits (58), Expect = 9.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 16 TNLSPISHFFPQNPGVPPLISFSRFFSSNNNSNDNNQSSSNVWNLSREIDGKFDQLFGDT 75
T + I+ +PPLI + SSN N N NN S+ N+ + K+ +
Sbjct: 209 TGVYKIT----TKNNLPPLIIYEAIGSSNRNMNSNNLSNDNIKAI------KYITGLNRS 258
Query: 76 EAKD 79
+AK
Sbjct: 259 DAKS 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.381
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,742,232
Number of extensions: 290794
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 54
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)