RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021913
         (305 letters)



>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score = 81.4 bits (201), Expect = 8e-20
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK S ARV+I+PG+GK ++N +  + YF     R  + +P      +   D+  T
Sbjct: 3   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 62

Query: 293 VKGGGVSGELRC 304
           VKGGG+SG+   
Sbjct: 63  VKGGGISGQAGA 74


>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
           thermophilus [TaxId: 274]}
          Length = 127

 Score = 80.4 bits (198), Expect = 2e-19
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK ++ARV+++PG+GK  VN ++F+ YF  L    A L P      LG +D   T
Sbjct: 4   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 63

Query: 293 VKGGGVSGELRC 304
           V+GGG SG++  
Sbjct: 64  VRGGGKSGQIDA 75


>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
           protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 32.6 bits (74), Expect = 0.013
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 182 EGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQ--KQEEVAKARVRQVDEKGR 231
             ++ +  LS +     E   R +      R   ++ ++  A V+ V   G 
Sbjct: 30  SRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGA 81


>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex
           RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId:
           56636]}
          Length = 88

 Score = 31.0 bits (70), Expect = 0.038
 Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 4/50 (8%)

Query: 182 EGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGR 231
                +  + +     +               K  +  KA+V   D+   
Sbjct: 29  SPYVAVLSVQDFLGRPFNPAVDDM----QSLLKVGDYIKAKVVAFDKTRS 74


>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of
           polyribonucleotide phosphorylase, PNPase {Streptomyces
           antibioticus [TaxId: 1890]}
          Length = 62

 Score = 26.6 bits (59), Expect = 0.69
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 182 EGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGR 231
            G +GL  +S+I ++   K        E      ++V +  + ++D +G+
Sbjct: 17  PGKDGLLHISQIRKLAGGKRVEN---VEDVLGVGQKV-QVEIAEIDSRGK 62


>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 519

 Score = 28.1 bits (62), Expect = 1.7
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 105 FEIGESAGTFDETGRESGEADEESKEELSE----EELRMLQLEEKQLTAELQGPSRAFGD 160
           FE  E    F    +     D +  +E+       E   L    + LT +     +  G 
Sbjct: 14  FEQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRREALTVDPAKACQPLGA 73

Query: 161 LIAASGITDAM 171
           ++ + G  + +
Sbjct: 74  VLCSLGFANTL 84


>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
           channel {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 136

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 205 STRAEIERQKQEEVAKARVRQVDEKGRA 232
           S R E+E Q Q+++ +A+ + V    R 
Sbjct: 1   SARREVESQAQQQLERAKHKPVAFAVRT 28


>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 26.2 bits (57), Expect = 4.8
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 196 MRYEKNTRKSTRAEIERQKQEEVAKARVRQ 225
           MR + +       EI R++  EVA   + +
Sbjct: 1   MRPDLSRVPGVLGEIARKRASEVAPYPLPE 30


>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 124

 Score = 25.7 bits (56), Expect = 4.9
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 225 QVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKE--FD 262
           +V+++G A  TG R C    +    GD   +  D    FD
Sbjct: 87  KVEQEGGACHTGYRSCFYRSI---DGDELKVREDAVKVFD 123


>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 522

 Score = 26.6 bits (58), Expect = 5.1
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 124 ADEESKEELSE----EELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAM 171
             ++  +E+ +    +E + L  + + LT       +  G ++ A G    M
Sbjct: 34  YPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKACQPLGAVLCALGFEKTM 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,135,168
Number of extensions: 53729
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 15
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.5 bits)