BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021914
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRLLG 304
+ D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++LG
Sbjct: 451 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 510
>pdb|1URQ|D Chain D, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 69
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRL 302
+++ D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++
Sbjct: 8 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 67
Query: 303 LG 304
LG
Sbjct: 68 LG 69
>pdb|3HD7|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|H Chain H, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|H Chain H, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 68
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRL 302
+++ D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++
Sbjct: 7 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 66
Query: 303 LG 304
LG
Sbjct: 67 LG 68
>pdb|1N7S|D Chain D, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 66
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRL 302
+++ D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++
Sbjct: 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64
Query: 303 LG 304
LG
Sbjct: 65 LG 66
>pdb|1SFC|D Chain D, Neuronal Synaptic Fusion Complex
pdb|1SFC|H Chain H, Neuronal Synaptic Fusion Complex
pdb|1SFC|L Chain L, Neuronal Synaptic Fusion Complex
Length = 87
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRL 302
+++ D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++
Sbjct: 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83
Query: 303 LG 304
LG
Sbjct: 84 LG 85
>pdb|1XTG|B Chain B, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH
Synaptosomal-Associated Protein 25
Length = 59
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 247 DDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRLLG 304
D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++LG
Sbjct: 2 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 59
>pdb|1KIL|D Chain D, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRL 302
+++ D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++
Sbjct: 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64
Query: 303 L 303
L
Sbjct: 65 L 65
>pdb|3RK2|D Chain D, Truncated Snare Complex
pdb|3RK2|H Chain H, Truncated Snare Complex
pdb|3RK3|D Chain D, Truncated Snare Complex With Complexin
pdb|3RL0|D Chain D, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|H Chain H, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|L Chain L, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|P Chain P, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|T Chain T, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|X Chain X, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|BB Chain b, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|FF Chain f, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRL 302
+++ D+ L ++SGI+G L++MA DMG+EID QN+ R+ +AN R ++
Sbjct: 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64
Query: 303 L 303
L
Sbjct: 65 L 65
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXXNIRVKDANLRGRRLL 303
+ ++ L+++ ILG LK+MA ++G+EID QN+ R+ AN R ++L+
Sbjct: 434 EMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDKADTNRDRIDIANARAKKLI 492
>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 87
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 232 PTDAYQKIEVEKSKQDDA---LSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXX 288
P+ Y +++DD + E+S ++G L+NMA DMG+EI QN+
Sbjct: 11 PSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESN 70
Query: 289 NIRVKDANLRGRRLL 303
R+ +AN + +LL
Sbjct: 71 ESRIDEANKKATKLL 85
>pdb|1N7S|C Chain C, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 79
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 96 GGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYT 155
G + N+ ++E++ A A+++ + L++ EE ++ +TLV L +QGEQ+ R
Sbjct: 1 GSMRNE-LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEG 59
Query: 156 AASIDHDLSRGEKLLGSLG 174
I+ D+ EK L LG
Sbjct: 60 MNHINQDMKEAEKNLKDLG 78
>pdb|1SFC|C Chain C, Neuronal Synaptic Fusion Complex
pdb|1SFC|G Chain G, Neuronal Synaptic Fusion Complex
pdb|1SFC|K Chain K, Neuronal Synaptic Fusion Complex
Length = 83
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 103 VQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHD 162
++E++ A A+++ + L++ EE ++ +TLV L +QGEQ+ R I+ D
Sbjct: 11 LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 70
Query: 163 LSRGEKLLGSLG 174
+ EK L LG
Sbjct: 71 MKEAEKNLKDLG 82
>pdb|1URQ|C Chain C, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
pdb|3HD7|C Chain C, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|G Chain G, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|C Chain C, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|G Chain G, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 80
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 103 VQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHD 162
++E++ A A+++ + L++ EE ++ +TLV L +QGEQ+ R I+ D
Sbjct: 8 LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 67
Query: 163 LSRGEKLLGSLG 174
+ EK L LG
Sbjct: 68 MKEAEKNLKDLG 79
>pdb|3RK2|C Chain C, Truncated Snare Complex
pdb|3RK2|G Chain G, Truncated Snare Complex
pdb|3RK3|C Chain C, Truncated Snare Complex With Complexin
pdb|3RL0|C Chain C, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|G Chain G, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|K Chain K, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|O Chain O, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|S Chain S, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|W Chain W, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|AA Chain a, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|EE Chain e, Truncated Snare Complex With Complexin (P1)
Length = 81
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 103 VQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHD 162
++E++ A A+++ + L++ EE ++ +TLV L +QGEQ+ R I+ D
Sbjct: 9 LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 68
Query: 163 LSRGEKLLGSLG 174
+ EK L LG
Sbjct: 69 MKEAEKNLKDLG 80
>pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 82
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 103 VQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHD 162
++E++ A A+++ + L++ EE ++ +TLV L +QGEQ+ R I+ D
Sbjct: 11 LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKD 70
Query: 163 LSRGEKLLGSLG 174
+ EK L LG
Sbjct: 71 MKEAEKNLTDLG 82
>pdb|1KIL|C Chain C, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 74
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 102 SVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDH 161
S++E++ A A+++ + L++ EE ++ +TLV L +QGEQ+ R I+
Sbjct: 2 SLEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQ 61
Query: 162 DLSRGEKLLGSL 173
D+ EK L L
Sbjct: 62 DMKEAEKNLKDL 73
>pdb|1L4A|C Chain C, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 83
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 103 VQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHD 162
++E++ +D+ + L + EE +E +TLV L +QGEQ+ R I+ D
Sbjct: 11 LEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70
Query: 163 LSRGEKLLGSLGGM 176
+ EK +L GM
Sbjct: 71 MKDAEK---NLEGM 81
>pdb|1N7U|A Chain A, The Receptor-Binding Protein P2 Of Bacteriophage Prd1:
Crystal Form I
Length = 554
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 18 DPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTA-VS 76
+P + V+ R P+ D +D T K + P L +++ N F DD++KENT +
Sbjct: 290 NPMNAVAGRLVPYVEDIAVDIFLT---GKFFTLNPPL---RITNNYFADDEVKENTVTIG 343
Query: 77 SY--SLTSAARNKYRND-------FRDSGGLENQSVQELEDYAV 111
+Y +L+SA Y+ D F SGG ++ +L+D +V
Sbjct: 344 NYTTTLSSAYYAVYKTDGYGGATCFIASGGAGISALVQLQDNSV 387
>pdb|1N7V|A Chain A, The Receptor-Binding Protein P2 Of Bacteriophage Prd1:
Crystal Form Iii
Length = 555
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 18 DPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTA-VS 76
+P + V+ R P+ D +D T K + P L +++ N F DD++KENT +
Sbjct: 290 NPMNAVAGRLVPYVEDIAVDIFLT---GKFFTLNPPL---RITNNYFADDEVKENTVTIG 343
Query: 77 SY--SLTSAARNKYRND-------FRDSGGLENQSVQELEDYAV 111
+Y +L+SA Y+ D F SGG ++ +L+D +V
Sbjct: 344 NYTTTLSSAYYAVYKTDGYGGATCFIASGGAGISALVQLQDNSV 387
>pdb|1N00|A Chain A, Annexin Gh1 From Cotton
Length = 321
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 50 SEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDF 92
+E L K+S + DDD+ A S + +A N Y+N++
Sbjct: 175 TEAKLLHEKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEY 217
>pdb|3BRX|A Chain A, Crystal Structure Of Calcium-Bound Cotton Annexin Gh1
Length = 317
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 50 SEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDF 92
+E L K+S + DDD+ A S + +A N Y+N++
Sbjct: 171 TEAKLLHEKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEY 213
>pdb|2NPS|D Chain D, Crystal Structure Of The Early Endosomal Snare Complex
Length = 82
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 246 QDDALSELSGILGELKNMATDMGSEIDRQ 274
QD+ L +SG +G LKNM+ +G E++ Q
Sbjct: 17 QDEQLELVSGSIGVLKNMSQRIGGELEEQ 45
>pdb|1GL2|D Chain D, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 245 KQDDALSELSGILGELKNMATDMGSEIDRQNK 276
+QD L LS I+ K M ++G+E+D QN+
Sbjct: 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNE 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,489,837
Number of Sequences: 62578
Number of extensions: 334171
Number of successful extensions: 562
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 24
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)