Query 021914
Match_columns 305
No_of_seqs 231 out of 638
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3065 SNAP-25 (synaptosome-a 100.0 4.9E-46 1.1E-50 347.4 23.1 256 23-303 3-273 (273)
2 PF05739 SNARE: SNARE domain; 99.1 1.9E-10 4.1E-15 84.6 8.1 60 245-304 1-60 (63)
3 cd00193 t_SNARE Soluble NSF (N 98.9 7.3E-09 1.6E-13 74.3 7.9 59 244-302 2-60 (60)
4 KOG3202 SNARE protein TLG1/Syn 98.8 2E-08 4.4E-13 92.8 8.4 62 243-304 147-208 (235)
5 smart00397 t_SNARE Helical reg 98.8 5.4E-08 1.2E-12 70.8 8.4 60 243-302 7-66 (66)
6 PF12352 V-SNARE_C: Snare regi 98.7 8.4E-08 1.8E-12 71.5 8.0 60 115-174 4-63 (66)
7 KOG3385 V-SNARE [Intracellular 97.9 3.3E-05 7.1E-10 64.1 6.8 61 244-304 32-92 (118)
8 KOG1666 V-SNARE [Intracellular 97.8 8E-05 1.7E-09 67.9 7.8 61 114-174 130-190 (220)
9 smart00397 t_SNARE Helical reg 97.5 0.0011 2.4E-08 47.9 8.6 58 115-172 8-65 (66)
10 cd00193 t_SNARE Soluble NSF (N 96.8 0.011 2.4E-07 41.9 8.3 54 119-172 6-59 (60)
11 PF03908 Sec20: Sec20; InterP 96.6 0.016 3.5E-07 46.0 8.3 61 114-174 3-63 (92)
12 PF05739 SNARE: SNARE domain; 95.9 0.063 1.4E-06 39.0 8.0 48 126-173 11-58 (63)
13 PF09753 Use1: Membrane fusion 94.6 0.19 4.2E-06 46.7 8.8 63 243-305 162-224 (251)
14 PF12352 V-SNARE_C: Snare regi 94.3 0.31 6.8E-06 35.9 7.7 58 247-304 7-64 (66)
15 KOG3065 SNAP-25 (synaptosome-a 93.1 7.1 0.00015 37.4 16.3 171 109-294 83-271 (273)
16 KOG0810 SNARE protein Syntaxin 91.8 0.73 1.6E-05 44.5 8.0 56 247-302 205-260 (297)
17 COG5325 t-SNARE complex subuni 90.6 1.1 2.4E-05 42.7 7.7 59 244-302 191-249 (283)
18 KOG0811 SNARE protein PEP12/VA 83.1 6.7 0.00014 37.5 8.4 60 244-303 176-235 (269)
19 PRK11637 AmiB activator; Provi 82.9 54 0.0012 32.8 16.1 54 240-293 183-236 (428)
20 PF07889 DUF1664: Protein of u 79.5 23 0.00049 30.1 9.6 66 239-304 59-124 (126)
21 PF15456 Uds1: Up-regulated Du 79.5 30 0.00066 29.2 10.3 76 98-174 19-108 (124)
22 KOG2546 Abl interactor ABI-1, 77.4 9.8 0.00021 38.6 7.7 53 126-178 62-119 (483)
23 PRK00846 hypothetical protein; 75.3 22 0.00047 27.8 7.6 53 244-296 9-61 (77)
24 COG5325 t-SNARE complex subuni 74.0 28 0.0006 33.5 9.4 98 61-173 152-249 (283)
25 KOG0809 SNARE protein TLG2/Syn 72.4 15 0.00033 35.6 7.4 58 245-302 215-272 (305)
26 KOG0810 SNARE protein Syntaxin 72.4 41 0.00089 32.6 10.5 46 127-172 214-259 (297)
27 KOG0811 SNARE protein PEP12/VA 72.3 35 0.00076 32.6 9.8 59 114-172 175-233 (269)
28 PRK02793 phi X174 lysis protei 68.4 32 0.00069 26.2 7.1 50 246-295 6-55 (72)
29 KOG3202 SNARE protein TLG1/Syn 68.2 61 0.0013 30.4 10.3 71 101-174 137-207 (235)
30 KOG0812 SNARE protein SED5/Syn 67.9 18 0.00038 35.0 6.8 53 250-302 229-281 (311)
31 PRK00736 hypothetical protein; 66.4 41 0.00089 25.3 7.3 48 248-295 5-52 (68)
32 PF04102 SlyX: SlyX; InterPro 66.2 29 0.00063 26.1 6.4 50 247-296 3-52 (69)
33 KOG2678 Predicted membrane pro 65.5 29 0.00063 32.5 7.5 56 247-302 154-209 (244)
34 PRK04325 hypothetical protein; 64.8 48 0.001 25.4 7.5 50 246-295 7-56 (74)
35 PRK04406 hypothetical protein; 64.1 53 0.0012 25.3 7.6 51 245-295 8-58 (75)
36 PRK02119 hypothetical protein; 63.9 52 0.0011 25.2 7.5 52 244-295 5-56 (73)
37 PRK00295 hypothetical protein; 63.0 55 0.0012 24.7 7.4 49 248-296 5-53 (68)
38 cd00179 SynN Syntaxin N-termin 63.0 34 0.00073 28.6 7.0 58 244-301 9-66 (151)
39 PF10046 BLOC1_2: Biogenesis o 62.8 61 0.0013 26.0 8.2 54 244-301 38-91 (99)
40 PF01519 DUF16: Protein of unk 62.0 85 0.0018 25.9 8.8 49 245-293 50-98 (102)
41 PF04728 LPP: Lipoprotein leuc 61.5 44 0.00096 24.6 6.4 39 244-282 13-51 (56)
42 smart00503 SynN Syntaxin N-ter 60.6 64 0.0014 25.5 8.0 29 244-272 11-39 (117)
43 KOG3894 SNARE protein Syntaxin 56.0 60 0.0013 31.7 8.1 59 246-304 230-288 (316)
44 PF03670 UPF0184: Uncharacteri 55.5 24 0.00052 28.0 4.4 19 244-262 29-47 (83)
45 KOG0812 SNARE protein SED5/Syn 53.9 1.1E+02 0.0023 29.8 9.3 55 115-169 223-277 (311)
46 COG5074 t-SNARE complex subuni 52.9 48 0.001 31.4 6.6 68 232-303 173-240 (280)
47 COG1538 TolC Outer membrane pr 52.1 59 0.0013 32.4 7.8 69 109-177 168-236 (457)
48 PF10046 BLOC1_2: Biogenesis o 50.4 1.3E+02 0.0028 24.1 9.8 30 272-301 69-98 (99)
49 PF05531 NPV_P10: Nucleopolyhe 49.0 67 0.0015 25.0 5.9 49 244-292 14-65 (75)
50 PF03908 Sec20: Sec20; InterP 48.8 1.3E+02 0.0028 23.5 8.5 59 245-303 5-63 (92)
51 PF01519 DUF16: Protein of unk 48.6 1.5E+02 0.0033 24.4 8.9 57 246-302 42-100 (102)
52 PF10475 DUF2450: Protein of u 48.6 1.9E+02 0.0041 27.4 10.3 71 101-173 67-137 (291)
53 PRK11637 AmiB activator; Provi 48.4 1.2E+02 0.0027 30.2 9.4 37 266-302 93-129 (428)
54 PF08650 DASH_Dad4: DASH compl 47.6 35 0.00075 26.4 4.1 30 273-302 8-37 (72)
55 PF14523 Syntaxin_2: Syntaxin- 47.5 61 0.0013 25.3 5.8 55 247-302 2-56 (102)
56 KOG3208 SNARE protein GS28 [In 46.3 56 0.0012 30.5 6.0 56 118-173 148-203 (231)
57 PRK09973 putative outer membra 45.3 1E+02 0.0022 24.5 6.6 39 244-282 34-72 (85)
58 PF08614 ATG16: Autophagy prot 45.0 1.6E+02 0.0035 26.2 8.7 63 240-302 108-170 (194)
59 PF00957 Synaptobrevin: Synapt 44.4 1.4E+02 0.0031 22.9 7.4 53 249-301 4-56 (89)
60 PF00957 Synaptobrevin: Synapt 40.5 1.7E+02 0.0036 22.5 8.2 49 126-174 10-58 (89)
61 PF05837 CENP-H: Centromere pr 40.3 2E+02 0.0043 23.3 8.9 61 118-178 20-82 (106)
62 PF00015 MCPsignal: Methyl-acc 39.0 2.5E+02 0.0055 24.1 10.0 60 105-164 79-138 (213)
63 COG4768 Uncharacterized protei 38.9 1.1E+02 0.0023 26.6 6.1 48 244-291 27-78 (139)
64 PRK10803 tol-pal system protei 38.3 1.6E+02 0.0035 27.7 8.0 12 250-261 63-74 (263)
65 COG1382 GimC Prefoldin, chaper 37.3 1.8E+02 0.0039 24.6 7.2 65 238-302 24-96 (119)
66 PF04728 LPP: Lipoprotein leuc 34.5 1.9E+02 0.0041 21.3 7.5 47 249-295 4-50 (56)
67 PF06120 Phage_HK97_TLTM: Tail 33.8 1.4E+02 0.0031 29.0 7.0 52 247-298 54-110 (301)
68 PF13747 DUF4164: Domain of un 33.1 2.5E+02 0.0053 22.2 8.3 55 251-305 35-89 (89)
69 PRK09837 copper/silver efflux 32.9 1.6E+02 0.0034 29.2 7.3 65 112-176 185-249 (461)
70 KOG0809 SNARE protein TLG2/Syn 32.9 1.2E+02 0.0026 29.5 6.1 51 124-174 223-273 (305)
71 PF10241 KxDL: Uncharacterized 32.8 2.4E+02 0.0052 22.1 8.5 57 119-181 28-84 (88)
72 PRK09915 putative outer membra 32.8 1.8E+02 0.004 29.2 7.9 65 112-176 205-269 (488)
73 PRK15396 murein lipoprotein; P 31.5 2.5E+02 0.0055 21.9 7.1 39 244-282 35-73 (78)
74 PF07851 TMPIT: TMPIT-like pro 31.1 4.3E+02 0.0093 26.1 9.7 55 101-159 4-58 (330)
75 PF05103 DivIVA: DivIVA protei 30.9 63 0.0014 26.3 3.5 58 244-301 21-78 (131)
76 PRK09973 putative outer membra 30.8 2.8E+02 0.006 22.1 7.0 48 249-296 25-72 (85)
77 PF11945 WASH_WAHD: WAHD domai 29.7 2.5E+02 0.0054 27.2 7.8 54 248-304 18-71 (297)
78 TIGR01005 eps_transp_fam exopo 29.3 3.6E+02 0.0077 28.9 9.7 68 106-173 328-395 (754)
79 KOG4421 Uncharacterized conser 29.2 52 0.0011 33.2 3.1 20 19-38 444-464 (637)
80 PF05565 Sipho_Gp157: Siphovir 28.4 3.5E+02 0.0077 23.4 8.0 56 244-299 36-91 (162)
81 PF05266 DUF724: Protein of un 27.4 4.6E+02 0.01 23.6 8.9 61 242-302 125-185 (190)
82 PF14712 Snapin_Pallidin: Snap 26.4 3E+02 0.0065 21.1 8.0 57 246-302 33-90 (92)
83 KOG3251 Golgi SNAP receptor co 26.1 2.2E+02 0.0048 26.4 6.4 56 119-174 129-184 (213)
84 TIGR03017 EpsF chain length de 25.3 6.6E+02 0.014 24.7 10.6 75 99-173 280-361 (444)
85 PF10779 XhlA: Haemolysin XhlA 25.2 2.9E+02 0.0062 20.6 6.0 29 274-302 18-46 (71)
86 PF09753 Use1: Membrane fusion 25.1 5.5E+02 0.012 23.7 9.4 55 120-174 168-222 (251)
87 COG3883 Uncharacterized protei 25.0 4.7E+02 0.01 25.0 8.6 54 247-300 44-97 (265)
88 PF04111 APG6: Autophagy prote 24.8 6.4E+02 0.014 24.4 9.9 66 239-304 69-134 (314)
89 PF12718 Tropomyosin_1: Tropom 24.5 4.5E+02 0.0097 22.5 10.0 70 101-171 35-104 (143)
90 PF03670 UPF0184: Uncharacteri 23.9 1.3E+02 0.0029 23.9 3.9 28 267-294 31-58 (83)
91 PRK04654 sec-independent trans 23.7 5.3E+02 0.011 24.0 8.4 45 248-293 27-71 (214)
92 PF00804 Syntaxin: Syntaxin; 23.7 3.2E+02 0.007 20.5 7.7 29 244-272 10-38 (103)
93 COG4942 Membrane-bound metallo 23.5 4.4E+02 0.0095 26.9 8.5 42 246-287 43-84 (420)
94 smart00502 BBC B-Box C-termina 23.1 3.7E+02 0.0079 20.9 7.5 28 245-272 18-45 (127)
95 PF04102 SlyX: SlyX; InterPro 22.7 2.8E+02 0.006 20.7 5.4 42 248-289 11-52 (69)
96 PF05377 FlaC_arch: Flagella a 22.5 3.2E+02 0.0069 20.1 5.9 38 244-281 3-40 (55)
97 PF10152 DUF2360: Predicted co 22.5 2E+02 0.0043 24.8 5.2 44 136-179 6-53 (148)
98 PHA03395 p10 fibrous body prot 22.5 2.9E+02 0.0063 22.1 5.7 47 244-290 14-63 (87)
99 KOG3088 Secretory carrier memb 22.3 5E+02 0.011 25.4 8.2 10 26-35 5-14 (313)
100 PF10805 DUF2730: Protein of u 21.8 4.3E+02 0.0094 21.3 8.4 49 243-291 44-94 (106)
101 KOG3208 SNARE protein GS28 [In 21.5 2.4E+02 0.0053 26.4 5.8 50 254-303 155-204 (231)
102 PF07195 FliD_C: Flagellar hoo 21.4 2.4E+02 0.0051 25.9 5.8 61 244-304 174-235 (239)
103 PF06009 Laminin_II: Laminin D 21.0 32 0.0007 29.1 0.0 58 245-302 49-109 (138)
104 PF05791 Bacillus_HBL: Bacillu 20.8 5.6E+02 0.012 22.7 7.9 55 247-301 102-156 (184)
105 COG3883 Uncharacterized protei 20.7 6.2E+02 0.013 24.3 8.5 55 244-298 48-102 (265)
106 PF04568 IATP: Mitochondrial A 20.6 1.7E+02 0.0036 23.9 4.1 29 258-286 72-100 (100)
107 PF00261 Tropomyosin: Tropomyo 20.5 6.6E+02 0.014 23.0 15.6 36 265-300 144-179 (237)
108 PRK15344 type III secretion sy 20.4 1.4E+02 0.003 23.1 3.3 26 252-277 2-27 (71)
109 TIGR01845 outer_NodT efflux tr 20.3 3.6E+02 0.0079 26.2 7.2 65 112-176 180-244 (454)
110 PHA03386 P10 fibrous body prot 20.0 2.4E+02 0.0052 22.9 4.8 44 244-291 15-58 (94)
111 PF11932 DUF3450: Protein of u 20.0 6.9E+02 0.015 22.9 9.4 49 242-290 50-98 (251)
No 1
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-46 Score=347.35 Aligned_cols=256 Identities=36% Similarity=0.476 Sum_probs=197.3
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCCCCCccCCCCCCCCCCCCccccccccccchhchHHHhhhhhhccCCCCccchh
Q 021914 23 VSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQS 102 (305)
Q Consensus 23 ~~~~~npf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~r~~y~~~~~~~~~~e~q~ 102 (305)
.|+..|||+..+++++.+++.+ . -....+||+++....+. .+. +.+.....++++.++|+
T Consensus 3 ~~~~~~~~~~~e~~~~~~~~~~--------~---~~~~~~d~~~~~~~~~~-------~~~--~~d~~~~~~~~~~~~~~ 62 (273)
T KOG3065|consen 3 RPSKNNAFDTEEHSWRELALSQ--------G---LMRGSNDRDDDYARVFA-------HSG--QLDKMELVDSGEEEDEE 62 (273)
T ss_pred CcccccccccchhhhHhhccch--------h---hhccCCCcccccccccc-------chh--hHHHhccccccccchHH
Confidence 5788999998888877766654 0 12356777776432222 112 45577889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcccccCCCC
Q 021914 103 VQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWK 182 (305)
Q Consensus 103 v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~F~~~~k 182 (305)
|++|++++.+++++|++||+|||++|+|++++|++|+++|++|+|||+|||.+||.|+.++++++++|++|++||+..|+
T Consensus 63 ~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g~~~~ 142 (273)
T KOG3065|consen 63 VDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFGLLVK 142 (273)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCCCCCCCCcccCCC---cchhhccchhHHhhhc--CCCCCCCCCCC-----CCCC-----CCCCcHHHHhHHHhHHHH
Q 021914 183 PKKTRPIMGPVITRDD---PVQRRGNHLEQREKLG--LNNTSKGQSNT-----RAQL-----PEPTDAYQKIEVEKSKQD 247 (305)
Q Consensus 183 pkk~~~~~g~v~s~~~---~~~r~~~~~~~R~~lg--~s~~p~g~~~~-----r~~~-----~~~~nd~ee~e~e~~eqD 247 (305)
|+++..+.+|...... ..++...+..-+.+.+ .+...++.+.. +.+. .+.+++.++ ++||
T Consensus 143 p~~~~~~~~p~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~e-----deiD 217 (273)
T KOG3065|consen 143 PFKKKRVREPTETSLKQRSISKRRMDETLIRAKPGELRSAAERSPSEKRTGLQGARSSLKARAYQTEPAAE-----DEID 217 (273)
T ss_pred ccccCCCCCcchhcccccCcchhhhhHHHHhhhcccccccccccccccCcCCcccchhhhhhhhccCChhh-----hHHH
Confidence 9888776555443321 1111111222233332 11111111111 1111 334444333 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
.||++|+.+|++||+||++||+||+.||++||+|+++||+++.+|+.+|+||++||
T Consensus 218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999986
No 2
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.15 E-value=1.9e-10 Score=84.56 Aligned_cols=60 Identities=37% Similarity=0.577 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 245 eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
++|+.|+.|+..|.+||.|+.+||.||+.|+.+||+|+..|+.+..+|..+++++.++++
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999875
No 3
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=98.90 E-value=7.3e-09 Score=74.33 Aligned_cols=59 Identities=36% Similarity=0.628 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.++++.|+.|+..+.+|+.|+.+|+.||..|+++||+|++.++.+..++..+++++.++
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999998763
No 4
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2e-08 Score=92.84 Aligned_cols=62 Identities=32% Similarity=0.443 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 243 ~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
.++||+.|+.|+..+++||+||..||+||+.|+.+||++...+|.++.+|..+.+++.++.+
T Consensus 147 ~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 147 LQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999988654
No 5
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.75 E-value=5.4e-08 Score=70.82 Aligned_cols=60 Identities=35% Similarity=0.626 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 243 ~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
..++|..|+.|+..+.+|++|+.+|+.+|+.|+++||+|.+.++.+...+..++++++++
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 378899999999999999999999999999999999999999999999999999988763
No 6
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=98.70 E-value=8.4e-08 Score=71.46 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 115 EDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 115 qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
..+.++..+|.+++.|++++|.+|+..|..|+|+|.++...|+.|...+..+.+.|+.|.
T Consensus 4 ~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 4 LRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999875
No 7
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=3.3e-05 Score=64.14 Aligned_cols=61 Identities=28% Similarity=0.362 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
.|-|+.++.|.+-|..||.++++||.||+.||+.||.+++..|.+..-+..+..|++.+-+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar 92 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMAR 92 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHh
Confidence 5568899999999999999999999999999999999999999999999999999987654
No 8
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=8e-05 Score=67.89 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 114 AEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 114 ~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
-+.|++....+-|+|-|++++|..-+..|+.|+|+|.|...+|-+++.+|.+|-|.|++|.
T Consensus 130 LeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~ 190 (220)
T KOG1666|consen 130 LERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMT 190 (220)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 3678888889999999999999999999999999999999999999999999999999996
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.46 E-value=0.0011 Score=47.85 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 115 EDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 115 qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
++......+....+.+...++.....+|..|++.|.+++.+++.+...++.+.+.|..
T Consensus 8 ~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 8 EERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 5667788888899999999999999999999999999999999999999999998864
No 10
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=96.82 E-value=0.011 Score=41.90 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 119 KQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 119 ~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
+.+......+.+...++.....++..|++.|++|+.+++.+...++.+.+.|..
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455567778888899999999999999999999999999999999998864
No 11
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.55 E-value=0.016 Score=45.97 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 114 AEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 114 ~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
+.+.+++.+|..+++.+.-+-+..|+.+|..|.+.|..+...++.+...+..+.+.|+.|+
T Consensus 3 s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 3 SSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999997
No 12
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=95.91 E-value=0.063 Score=38.97 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
..+.+-.+++..-..++..|++.|.+++.+++.....++.+-+.|..+
T Consensus 11 ~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 11 QSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888899999999999999999999999999999988754
No 13
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=94.61 E-value=0.19 Score=46.75 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 021914 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK 305 (305)
Q Consensus 243 ~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~k 305 (305)
...||+=.++|......||.-++.|++-|...+..|++....+|.+-..|...+.|++...+|
T Consensus 162 ~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~ 224 (251)
T PF09753_consen 162 RNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK 224 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788889999999999999999999999999999999999999999999999999987653
No 14
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=94.33 E-value=0.31 Score=35.90 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
.+-|..-...+.....+|.++-.+|..|.+.|.++..+++.++..|...++=+++|-+
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 4567777888889999999999999999999999999999999999999988887653
No 15
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.12 E-value=7.1 Score=37.36 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcccccCCCCCCCCCC
Q 021914 109 YAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRP 188 (305)
Q Consensus 109 ~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~F~~~~kpkk~~~ 188 (305)
.+...+.++-...-+.|.++.+-.+.=.+|-..|..=-..+.+++++|.. |+++.+.|.+||+.++.+.
T Consensus 83 ~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~-----------l~~~~g~~~~p~~~~~~~~ 151 (273)
T KOG3065|consen 83 RMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE-----------LKGLFGLLVKPFKKKRVRE 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH-----------HHHHhcccCCccccCCCCC
Confidence 34455566666667777777777778888888888888888888888876 5567778888887776432
Q ss_pred CC---CC------------cccCCCcchhhccchhHHhhhcCCCCCCCCCC---CCCCCCCCCcHHHHhHHHhHHHHHHH
Q 021914 189 IM---GP------------VITRDDPVQRRGNHLEQREKLGLNNTSKGQSN---TRAQLPEPTDAYQKIEVEKSKQDDAL 250 (305)
Q Consensus 189 ~~---g~------------v~s~~~~~~r~~~~~~~R~~lg~s~~p~g~~~---~r~~~~~~~nd~ee~e~e~~eqD~nL 250 (305)
.. .+ ++.. .+.. ..++..|...+....+.+++. .+.|...+.-..+-++.- .++...|
T Consensus 152 p~e~~~~~~~~~~~~~~e~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~edeiD~NL-~qis~~l 227 (273)
T KOG3065|consen 152 PTETSLKQRSISKRRMDETLIRA-KPGE--LRSAAERSPSEKRTGLQGARSSLKARAYQTEPAAEDEIDENL-DQLSAIL 227 (273)
T ss_pred cchhcccccCcchhhhhHHHHhh-hccc--ccccccccccccCcCCcccchhhhhhhhccCChhhhHHHhhH-HHHHHHH
Confidence 21 01 1110 1100 011222222111112223332 122333333222323222 3445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 021914 251 SELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKD 294 (305)
Q Consensus 251 deLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~ 294 (305)
..|-.+--.+..==-.-+..|++=+.-.|+++..|+.++.|++.
T Consensus 228 g~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 228 GRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 55544443333333334566888888888888888888888865
No 16
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.84 E-value=0.73 Score=44.48 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
=+++-.|...|..|+.|=++|...++.|-++||+|+..|..+..-+..++..+++-
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kA 260 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKA 260 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999988877753
No 17
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=90.57 E-value=1.1 Score=42.73 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.+-|+++..|..+|-.|..+=.+||.=+-+|-.++|+|+..++.+.+.++.|++.+.|.
T Consensus 191 ~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA 249 (283)
T COG5325 191 TERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKA 249 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHh
Confidence 45589999999999999999999999999999999999999999999999999998875
No 18
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.15 E-value=6.7 Score=37.45 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
++-++.+.+|...|..|..|=.++|.=+.+|-+++|.|+..|+.+...+..+++.+.|-.
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~ 235 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAA 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788889999999999999999999999999999999999999999999999888743
No 19
>PRK11637 AmiB activator; Provisional
Probab=82.94 E-value=54 Score=32.76 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 021914 240 EVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVK 293 (305)
Q Consensus 240 e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~ 293 (305)
.....+++..+.++...+..+...-..+..+..+++..|..|..........|.
T Consensus 183 ~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~ 236 (428)
T PRK11637 183 AAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLS 236 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666667777777777777777777777766666666655554443333
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.54 E-value=23 Score=30.14 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=57.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 239 IEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 239 ~e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
+...+.++-..|+.|..-|.+...+...|.+|+..=-.-|++|..+++.+...|....-++..|-.
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344567788999999999999999999999999999999999999999999999999988887754
No 21
>PF15456 Uds1: Up-regulated During Septation
Probab=79.46 E-value=30 Score=29.22 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=54.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHHHHHHHHhHHhhhhhH
Q 021914 98 LENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTL--------------VSLHQQGEQITRTHYTAASIDHDL 163 (305)
Q Consensus 98 ~e~q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl--------------~~L~~QgEQL~rtE~~LD~I~~dL 163 (305)
+.-+||++|++++..-... +.++++-|.+-.-.++.+..-+ ..+..|.|.|.-.++.+|+...+|
T Consensus 19 Ls~eEVe~LKkEl~~L~~R-~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL 97 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSR-LEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQEL 97 (124)
T ss_pred cCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 4458999999998665544 5566666654444433222211 346889999999999999999999
Q ss_pred HHHHHHhhhhc
Q 021914 164 SRGEKLLGSLG 174 (305)
Q Consensus 164 k~aek~L~~Lk 174 (305)
-.++..+..+.
T Consensus 98 ~~le~R~~~~~ 108 (124)
T PF15456_consen 98 WKLENRLAEVR 108 (124)
T ss_pred HHHHHHHHHHH
Confidence 99999877764
No 22
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=77.44 E-value=9.8 Score=38.62 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHH-----HHHHhhhhccccc
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSR-----GEKLLGSLGGMFS 178 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~-----aek~L~~Lks~F~ 178 (305)
..||.+...+..++.+|..|.-||.+.|.+++.|.++..+ |-+.|+.|+..|+
T Consensus 62 svaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ihkekvArreIg~lttnk~ 119 (483)
T KOG2546|consen 62 SVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDIHKEKVARREIGNLTTNKG 119 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheecchhhhhhhccceeeccc
Confidence 4679999999999999999999999999999999988754 5666777765544
No 23
>PRK00846 hypothetical protein; Provisional
Probab=75.30 E-value=22 Score=27.81 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDAN 296 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~n 296 (305)
..+++.|++|..-|.-+-..--.++..|-.|...|+++...+..+..+++...
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678889999988888899999999999999999999999999988888754
No 24
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=73.96 E-value=28 Score=33.48 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=56.3
Q ss_pred CCCCCCCccccccccccchhchHHHhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021914 61 TNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLV 140 (305)
Q Consensus 61 ~~~f~~~~~~~~~~~~~~~~~~~~r~~y~~~~~~~~~~e~q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~ 140 (305)
+.|-++. +...+++++|+..+-+++...+.-. +.|- .-+...-++...=+ +-++|-.++=..--.
T Consensus 152 ~~~l~ee-e~e~~~~~~~sq~~lqq~~l~~ee~-----~~qq-----~l~~er~~eI~~l~----~gI~Eln~IF~dL~~ 216 (283)
T COG5325 152 QHPLEEE-EDEESLSSLGSQQTLQQQGLSNEEL-----EYQQ-----ILITERDEEIKNLA----RGIYELNEIFRDLGS 216 (283)
T ss_pred cCchhhh-hhhhhhhccchhhHHHHhhhhhhhH-----HHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444442 2223444677778888876663221 1111 01222222222222 223333333333333
Q ss_pred HHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 141 SLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 141 ~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
-..+||++.+||+-+++.+..+++-|.+.|...
T Consensus 217 lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA 249 (283)
T COG5325 217 LVGEQGELVDRIDFNIENTSDNLKNANKELEKA 249 (283)
T ss_pred HHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHh
Confidence 467999999999999999999999999988655
No 25
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.45 E-value=15 Score=35.55 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 245 eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
+=+....+|..+|..|..+=.+|+.=|-.|--.||||+..++.+..++..+.+.+.|.
T Consensus 215 erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 215 EREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999999999988764
No 26
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.36 E-value=41 Score=32.56 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 127 IAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 127 laeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
.+.|-.++=..-++.-..|||+|++||.++.....+...|..+++.
T Consensus 214 si~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~k 259 (297)
T KOG0810|consen 214 SIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKK 259 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666667799999999999999998888888777763
No 27
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.30 E-value=35 Score=32.62 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 114 AEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 114 ~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
.++-..+.++.=+-+.|-+++=..=..+.++||++++.||.+++....+...|.++|..
T Consensus 175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777788888899999999999999999999999999999999888887764
No 28
>PRK02793 phi X174 lysis protein; Provisional
Probab=68.39 E-value=32 Score=26.23 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDA 295 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~ 295 (305)
+++.|.+|..-|.-+-..--.++..|-+|...|+++...+..+..++...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55777788888888888888888888899999988888888887777654
No 29
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.23 E-value=61 Score=30.43 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 101 QSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 101 q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
++...+++++..-..+-++-...+ +--...+|..--.+|+.|+.-|+.-...+|..+.-|++..+.|..+.
T Consensus 137 ~~~~~~qqqm~~eQDe~Ld~ls~t---i~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~ 207 (235)
T KOG3202|consen 137 QEIVQLQQQMLQEQDEGLDGLSAT---VQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVN 207 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555422222 22223334444589999999999999999999999999999887664
No 30
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.94 E-value=18 Score=35.03 Aligned_cols=53 Identities=17% Similarity=0.371 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 250 LSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 250 LdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
+.-|+..|.+|.++=..+..=+.+|.+.+-||++.||..+..|..+..-|.|-
T Consensus 229 ~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy 281 (311)
T KOG0812|consen 229 MQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKY 281 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHH
Confidence 34455555555555555555699999999999999999999999998777654
No 31
>PRK00736 hypothetical protein; Provisional
Probab=66.38 E-value=41 Score=25.35 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 021914 248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDA 295 (305)
Q Consensus 248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~ 295 (305)
+.|.+|..-|.-+-..--.++..|-+|.+.|+.|...+..+..++...
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777777777777778888899999999988888888887654
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.18 E-value=29 Score=26.08 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDAN 296 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~n 296 (305)
++-|.+|..-|.-+-..--.++..|-+|...|++|...+..+..+|....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666677777778888888888877777777776653
No 33
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=65.54 E-value=29 Score=32.45 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
++--..|....+-||.+|++.++-|+.-|..|.+...-+|.+-..+..++.|+.+-
T Consensus 154 eeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y 209 (244)
T KOG2678|consen 154 EELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKY 209 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 44446688888999999999999999999999999999999999999999998763
No 34
>PRK04325 hypothetical protein; Provisional
Probab=64.75 E-value=48 Score=25.39 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDA 295 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~ 295 (305)
+++.|.+|..-|.-+-..--.++..|-+|...|+++...+..+..+|...
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777777777777778888888899999998888888887777654
No 35
>PRK04406 hypothetical protein; Provisional
Probab=64.08 E-value=53 Score=25.31 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 021914 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDA 295 (305)
Q Consensus 245 eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~ 295 (305)
.+++.|.+|..-|.-+-..--.++..|-+|...|+.+...+..+..+|...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888888888888888889999999999999998888887777654
No 36
>PRK02119 hypothetical protein; Provisional
Probab=63.93 E-value=52 Score=25.15 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDA 295 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~ 295 (305)
..+++.|.+|..-|.-+-..--.++..|-+|.+.|+++...+..+..++...
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888888888888888888889999999999988888887777654
No 37
>PRK00295 hypothetical protein; Provisional
Probab=62.96 E-value=55 Score=24.65 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 021914 248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDAN 296 (305)
Q Consensus 248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~n 296 (305)
+.|.+|..-|.-+-..--.++..|-+|.+.|+.+...+..+..++....
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677767777777777777888888888888888888877777643
No 38
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=62.96 E-value=34 Score=28.58 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
+.+..+|..|...|..|..+-..+++..+.....=+.|+.-++.+...+...+.+++.
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~ 66 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKE 66 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877888777633334445555555555555555555444
No 39
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=62.80 E-value=61 Score=25.97 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
.++.+.+..|+..+..|+.. ..+|..+-.+||.|+..|..+..-+.....-.++
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k----~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQK----YEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666654 3667778888888887777776666555544443
No 40
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=62.05 E-value=85 Score=25.85 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 021914 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVK 293 (305)
Q Consensus 245 eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~ 293 (305)
.+.+.++.|...+..+-..=..+..|++.|.+.|+.|..-....+.||.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666777666666666777777777777777665555555544
No 41
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=61.46 E-value=44 Score=24.60 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLD 282 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~ 282 (305)
..+....++|+.-+.-|+.=+.+.-.|..+.|..||.+.
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455667777777777777777777778888888877764
No 42
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=60.58 E-value=64 Score=25.49 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEID 272 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd 272 (305)
+++..+|..|...|..|..+-..+++..+
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~ 39 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPD 39 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 45667777777777777777666665554
No 43
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.02 E-value=60 Score=31.73 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
+.+....+-.-|-.+-.|-..|.+-+-.|...||.|.+.+..++..|...|.-++++..
T Consensus 230 ~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~ 288 (316)
T KOG3894|consen 230 LLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKR 288 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 34444445555555556667788999999999999999999999999999999998763
No 44
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=55.51 E-value=24 Score=27.98 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKN 262 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~ 262 (305)
..++..||.|...|..|..
T Consensus 29 ~~ins~LD~Lns~LD~LE~ 47 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQ 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666665544443
No 45
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.91 E-value=1.1e+02 Score=29.85 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHH
Q 021914 115 EDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKL 169 (305)
Q Consensus 115 qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~ 169 (305)
|+=..+.++.=.-+-|.-.+-..-+-|..+|||-+.||+.++|+++-+..-|...
T Consensus 223 Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~e 277 (311)
T KOG0812|consen 223 QERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSE 277 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHH
Confidence 3334455555555666666667778888999999999999999999999988773
No 46
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=52.85 E-value=48 Score=31.38 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCcHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 232 PTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 232 ~~nd~ee~e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
......+++.- -.+|-.|...+..|-.|=.+|.+++-+|.+..|-|+..+..+...+...+.-+.+-+
T Consensus 173 AktaL~Evq~R----h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Av 240 (280)
T COG5074 173 AKTALAEVQAR----HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAV 240 (280)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHH
Confidence 44444455443 356777888888888899999999999999999999999999988888877776654
No 47
>COG1538 TolC Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=52.07 E-value=59 Score=32.41 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcccc
Q 021914 109 YAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMF 177 (305)
Q Consensus 109 ~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~F 177 (305)
+.....++++...+..+++++.--+.|..|...+.+..-+|..++..+-....++..+...|..|-|..
T Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~r~~~G~~~~~dv~qa~a~~~~a~~~l~~~~~~~~~a~~~L~~L~G~~ 236 (457)
T COG1538 168 EQLALAEETLAAAEEQLELAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLAQARNALARLLGLE 236 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 455678899999999999999999999999999999999999999999999999999999998886543
No 48
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=50.44 E-value=1.3e+02 Score=24.05 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=14.5
Q ss_pred HHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 272 DRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 272 d~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
+.=...+..|+.-|+.+|.-.+..-.|+++
T Consensus 69 d~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 69 DQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444555555555555555444443
No 49
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=48.98 E-value=67 Score=25.01 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhhHHhhhHHH
Q 021914 244 SKQDDALSELSGILGELKNMATD---MGSEIDRQNKSLDYLDDDVDVLNIRV 292 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~---mg~ELd~QN~~LD~I~~kvD~~~~ri 292 (305)
...++..+.|...+..|+.---. |..-||.|...|+.|+.+|.....-+
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888877777765554 78888999999999988887766543
No 50
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=48.78 E-value=1.3e+02 Score=23.54 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 245 eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
++.+.|......+..--..+..--.+|+.|+..|..+++..+.....|....+-+++|-
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777666666667777788999999999999999999988888877777654
No 51
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=48.64 E-value=1.5e+02 Score=24.38 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=29.4
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 246 QDDALS--ELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 246 qD~nLd--eLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
++.-|+ ..+.-|..|-..-...|.+|..+...++-...-.+.....|...|+|+.+|
T Consensus 42 iE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 42 IENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555 333333444444444555555555555555555555555666666666554
No 52
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.59 E-value=1.9e+02 Score=27.37 Aligned_cols=71 Identities=23% Similarity=0.241 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 101 QSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 101 q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
.+|++|+.+.. .+-....+.|+.|..+.+.--.+.=-+..+.+.++.|..+...|..| ..+..++..|..|
T Consensus 67 ~~v~el~~~l~-~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i-~~v~~~~~~l~~l 137 (291)
T PF10475_consen 67 SSVQELQDELE-EALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQI-KTVQQTQSRLQEL 137 (291)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 35667776662 22333445666666665554333334457778888888899999888 6677777777766
No 53
>PRK11637 AmiB activator; Provisional
Probab=48.40 E-value=1.2e+02 Score=30.16 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 266 DMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 266 ~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.+..+|...+..|+.+...+..+..+|......+.++
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 54
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=47.57 E-value=35 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=14.9
Q ss_pred HHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 273 RQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 273 ~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.|+.+|.||-..|++++.-|...|+.+..|
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eI 37 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEI 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444443
No 55
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=47.50 E-value=61 Score=25.27 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
..+|..|...+..|..+...+|+--|.+ +.-++|...+......++..+..+++|
T Consensus 2 s~~l~~in~~v~~l~k~~~~lGt~~Ds~-~lR~~i~~~~~~~~~l~k~~~~~l~~l 56 (102)
T PF14523_consen 2 SSNLFKINQNVSQLEKLVNQLGTPRDSQ-ELREKIHQLIQKTNQLIKEISELLKKL 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SSS--H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhCCccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999998888765544 344555555555555555555555554
No 56
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.26 E-value=56 Score=30.51 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 118 TKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 118 ~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
.++.++|-+++.|--..|.+|.+.|+.|+--|..+...+-.+-.-.=.---+|..|
T Consensus 148 ~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kI 203 (231)
T KOG3208|consen 148 HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKI 203 (231)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHH
Confidence 45788999999999999999999999999999999988877655444433344444
No 57
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=45.31 E-value=1e+02 Score=24.55 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLD 282 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~ 282 (305)
+.+....++|+.-+..++.-+..-..|-.+=|+.||+++
T Consensus 34 ~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 34 QTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 455667777777777777777777777788888877765
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.03 E-value=1.6e+02 Score=26.16 Aligned_cols=63 Identities=27% Similarity=0.446 Sum_probs=51.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 240 EVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 240 e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
+.........|..+-..+..|+.--..+..+|...++.+..|.+-...+...+..+..++.+|
T Consensus 108 ~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 108 EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455678888888889999999999999999999999999999999999999988888876
No 59
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=44.45 E-value=1.4e+02 Score=22.85 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 249 ALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 249 nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
.|..|..-|...+..-..-=..|-.-.+.|+.|.++++.+...=..-.+..++
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~ 56 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKK 56 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444443333333334444556777777777666655544444443
No 60
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=40.55 E-value=1.7e+02 Score=22.48 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
.-++++..+...++..|.+-||.|+..+...+.+......=.+....|+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~ 58 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLK 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456777778888888999999999999988888888777776666665
No 61
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=40.32 E-value=2e+02 Score=23.33 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHhHHhhhhhHHHHHHHhhhhccccc
Q 021914 118 TKQVHGCLKIAEEIREDATKTLVSLHQQGEQIT--RTHYTAASIDHDLSRGEKLLGSLGGMFS 178 (305)
Q Consensus 118 ~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~--rtE~~LD~I~~dLk~aek~L~~Lks~F~ 178 (305)
++.-...+++.....+.....+..-..+..+.. .....++.+..+++.+.....-|+++|+
T Consensus 20 ~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 20 SDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333333333333332 4667778888888888888888998885
No 62
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=39.02 E-value=2.5e+02 Score=24.12 Aligned_cols=60 Identities=23% Similarity=0.265 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHH
Q 021914 105 ELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLS 164 (305)
Q Consensus 105 eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk 164 (305)
-+=.+++.-++.|..++...-.++.+.......+...+..-.+.+..+-..+..+...+.
T Consensus 79 vvA~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 138 (213)
T PF00015_consen 79 VVADEIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLE 138 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhh
Confidence 566777777788888888888888877776555554444444444444444444333333
No 63
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=38.91 E-value=1.1e+02 Score=26.57 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 021914 244 SKQDDALSELSGILGEL----KNMATDMGSEIDRQNKSLDYLDDDVDVLNIR 291 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rL----K~mA~~mg~ELd~QN~~LD~I~~kvD~~~~r 291 (305)
.+.+..||+++..+.-| .++-..-..=+..+|.+.|+|+.|++.++.-
T Consensus 27 kkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~v 78 (139)
T COG4768 27 KKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPV 78 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHH
Confidence 55677787777766444 4444444555789999999999999887753
No 64
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.29 E-value=1.6e+02 Score=27.69 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 021914 250 LSELSGILGELK 261 (305)
Q Consensus 250 LdeLs~~l~rLK 261 (305)
|++|..-|.+|+
T Consensus 63 l~~lq~ev~~Lr 74 (263)
T PRK10803 63 LSDNQSDIDSLR 74 (263)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 65
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=1.8e+02 Score=24.58 Aligned_cols=65 Identities=23% Similarity=0.463 Sum_probs=48.4
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHHH--HHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 238 KIEVEKSKQDDALSELSGILGELKNMATD------MGSEI--DRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 238 e~e~e~~eqD~nLdeLs~~l~rLK~mA~~------mg~EL--d~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.+.+.+++++..|.++-.+|..|-.++-+ .|+=| -.+.+.++.|+++.+.+..||....++.++|
T Consensus 24 ~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l 96 (119)
T COG1382 24 KVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKL 96 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888766544 44433 2678888899999999888888888877765
No 66
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.45 E-value=1.9e+02 Score=21.32 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 021914 249 ALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDA 295 (305)
Q Consensus 249 nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~ 295 (305)
.+++|+.-|..|+.---.|..+|..=..-+....+.+.+++.||.+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666555555555444444444444555555555544
No 67
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.84 E-value=1.4e+02 Score=28.96 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHH
Q 021914 247 DDALSELSGIL-----GELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLR 298 (305)
Q Consensus 247 D~nLdeLs~~l-----~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr 298 (305)
-.+||+|..-+ -.|....-.+...|..|++.|+.+..+++.+...|...+..
T Consensus 54 A~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 54 ADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554433 34566666788889999999999999999888888655443
No 68
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=33.13 E-value=2.5e+02 Score=22.25 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 021914 251 SELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK 305 (305)
Q Consensus 251 deLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~k 305 (305)
+++..-|.+|..-=--+..|||.....+.++......+..+|..+...++-+|.+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~r 89 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLDR 89 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444444888999999999999999999999999999888888764
No 69
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=32.90 E-value=1.6e+02 Score=29.24 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 112 YKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 112 ~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
...++.++..+..|.+++.--+.|..+...+.+..-+|.+++..+..+..++..+...|.-|-|.
T Consensus 185 ~l~~~~~~~~~~~l~~~~~r~~~G~~~~~dv~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~LlG~ 249 (461)
T PRK09837 185 QIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRADIAKRQGELAQANNALQLLLGS 249 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCC
Confidence 46677777888888888888888998999999999999999999999999999999988877654
No 70
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.87 E-value=1.2e+02 Score=29.52 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 124 CLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 124 sLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
..+-++|-.++=..--.+..+||-+++||+=|++.+...++-|.+.|....
T Consensus 223 l~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe 273 (305)
T KOG0809|consen 223 LVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE 273 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH
Confidence 344455556666666778899999999999999999999999988776553
No 71
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=32.84 E-value=2.4e+02 Score=22.08 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcccccCCC
Q 021914 119 KQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTW 181 (305)
Q Consensus 119 ~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~F~~~~ 181 (305)
.+|++.|.-+-+ .+.. .|..=.+.+.+=-+.|-.|+.||....+.|..|++.+...|
T Consensus 28 n~tn~~L~~~n~---~s~~---rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~~y 84 (88)
T PF10241_consen 28 NKTNEELLNLND---LSQQ---RLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAKQY 84 (88)
T ss_pred HHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355555544433 3333 34444456677777888899999999999999997766543
No 72
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=32.81 E-value=1.8e+02 Score=29.16 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 112 YKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 112 ~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
...+++++..+..++++..--+.|..|...+.+..-++.+++..+..+..++..+...|..|=|.
T Consensus 205 ~l~~~~~~~~~~~~~~~~~r~~~G~~s~~dv~~a~~~l~~a~~~l~~~~~~~~~a~~~L~~LlG~ 269 (488)
T PRK09915 205 DLLEQTRDVIDYAVKAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGA 269 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677777888888888888889999999999999999999999999999999999988887653
No 73
>PRK15396 murein lipoprotein; Provisional
Probab=31.52 E-value=2.5e+02 Score=21.90 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLD 282 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~ 282 (305)
+.+....++|..-+..++.-+...-.|-.+=|..||++-
T Consensus 35 ~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 35 QTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666677777777777764
No 74
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.07 E-value=4.3e+02 Score=26.13 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhh
Q 021914 101 QSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASI 159 (305)
Q Consensus 101 q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I 159 (305)
+|+++|+++. ++.-++-+--...++|-.+.-..-+..+.+|..+|..+...|...
T Consensus 4 eEW~eL~~ef----q~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 4 EEWEELQKEF----QELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666555 222222233334444444444444555556665555554444333
No 75
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.90 E-value=63 Score=26.31 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
.+.|.-|+.|..-+..|..--..+..+|..-+..|..+......+...|..+.+....
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~ 78 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADE 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHH
Confidence 5678999999999999987777778888777777777776666666655555444433
No 76
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.78 E-value=2.8e+02 Score=22.13 Aligned_cols=48 Identities=8% Similarity=0.189 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 021914 249 ALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDAN 296 (305)
Q Consensus 249 nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~n 296 (305)
.+++|+.-|..|+.-.-.+..++..=...++.-.+.+.+++.||.++.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 577888888888888888888888888888888888888888887653
No 77
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=29.70 E-value=2.5e+02 Score=27.22 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
+-+.++...|..|....-+|= .+-+..|.+...++..++.||..+..|+.+|-+
T Consensus 18 Eti~qi~~aL~~L~~v~~diF---~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIF---SRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555555555555543 344556677777888888888888888887754
No 78
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.31 E-value=3.6e+02 Score=28.91 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 106 LEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 106 leq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
|++++....+..+.+..+-+..+..-++.-.+.+..|..+-.++...+..+..+..+...+++....|
T Consensus 328 l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 328 LDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333344444555555555555555555666666666666677777777777777777755444
No 79
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.18 E-value=52 Score=33.20 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCcc-cccc
Q 021914 19 PGHQVSSRSNPFDSDD-ELDN 38 (305)
Q Consensus 19 ~~~~~~~~~npf~~~~-~~~~ 38 (305)
|+...-+++|||.|++ +.+|
T Consensus 444 pgkveepsnnpffdeedeeed 464 (637)
T KOG4421|consen 444 PGKVEEPSNNPFFDEEDEEED 464 (637)
T ss_pred CccccCCCCCccccchhhhhh
Confidence 3344568999996644 3334
No 80
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=28.37 E-value=3.5e+02 Score=23.45 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRG 299 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~ 299 (305)
.++++-++.+...+..|...+..+-.|+.+-...-..+..+++++...|..+...+
T Consensus 36 ~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 36 DEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788899999999999999999999999999999999999999999888876553
No 81
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=27.38 E-value=4.6e+02 Score=23.61 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 242 EKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 242 e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
+..+.+..+.+|..-|.+|+..+..|..+-+.=...|.++...+..++..+..+..+-..+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788899999999999998888888888888888888888888888888877666554
No 82
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.35 E-value=3e+02 Score=21.11 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 246 QDDALSELSGILGELKNMATDM-GSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~m-g~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
+-..|+.+...|.++...-... --.+..--..|.+|...|..+..++....+|+.+|
T Consensus 33 L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 33 LLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555522211 12233377788888888888888888888888876
No 83
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=2.2e+02 Score=26.39 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 119 KQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 119 ~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
++..++=+.+.+.-+.|.+.++.|.+|+--|..|.+.+-.|-+.|-.+...|.-|.
T Consensus 129 d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIe 184 (213)
T KOG3251|consen 129 DSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIE 184 (213)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 36666777788888899999999999999999999999998888888888777775
No 84
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.28 E-value=6.6e+02 Score=24.71 Aligned_cols=75 Identities=7% Similarity=0.085 Sum_probs=37.4
Q ss_pred cchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhh
Q 021914 99 ENQSVQELEDYAVYKAEDTTK-------QVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLG 171 (305)
Q Consensus 99 e~q~v~eleq~~~~~~qeT~~-------ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~ 171 (305)
..-.|.+++.++......... +....+..+...+..-..++..+..+-..|.+.+..+..+..++..+++...
T Consensus 280 ~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~ 359 (444)
T TIGR03017 280 NHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYD 359 (444)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444333322 2222222222333333344444444445566666677777777777777655
Q ss_pred hh
Q 021914 172 SL 173 (305)
Q Consensus 172 ~L 173 (305)
.|
T Consensus 360 ~l 361 (444)
T TIGR03017 360 AA 361 (444)
T ss_pred HH
Confidence 54
No 85
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.21 E-value=2.9e+02 Score=20.64 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=13.9
Q ss_pred HHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 274 QNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 274 QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
..+.++.++.....++..|...+.++.+|
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555443
No 86
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=25.07 E-value=5.5e+02 Score=23.68 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 120 QVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 120 ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
=+.-+|.+|..-.+-+...-..|.....-|.+++..+|.--..|+.+.+.|+.+-
T Consensus 168 L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 168 LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHS 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999999999999999999999888887764
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.99 E-value=4.7e+02 Score=25.05 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHH
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGR 300 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~ 300 (305)
..++..+-.-|..|-.-...+..+++...+.++.+...+..+...|...+.++.
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555666666666666665555555555555555543
No 88
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.83 E-value=6.4e+02 Score=24.37 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=46.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 239 IEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 239 ~e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
.+.+..+++..|..+..-+..|+..-...-.+.....-.+-.+.+..+.+..++..+...+.+|-+
T Consensus 69 LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 69 LEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666667776666666666666666666666666677778888888888888888877643
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.55 E-value=4.5e+02 Score=22.48 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhh
Q 021914 101 QSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLG 171 (305)
Q Consensus 101 q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~ 171 (305)
++|..|...+ ...+.-++.+.--|.-+.+.-+.+.........=...|.-+|..|+..+..|+.+...|.
T Consensus 35 ~EI~sL~~K~-~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 35 QEITSLQKKN-QQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444 233444555555555555544444433333222222333334444444444444443333
No 90
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.86 E-value=1.3e+02 Score=23.86 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 021914 267 MGSEIDRQNKSLDYLDDDVDVLNIRVKD 294 (305)
Q Consensus 267 mg~ELd~QN~~LD~I~~kvD~~~~ri~~ 294 (305)
|+.-||.=|--||.|+.+.|.+..+|..
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~~ 58 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQE 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4445555666777777777777666653
No 91
>PRK04654 sec-independent translocase; Provisional
Probab=23.70 E-value=5.3e+02 Score=24.01 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 021914 248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVK 293 (305)
Q Consensus 248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~ 293 (305)
.-.-.|+..++++|.+...+-+||++.-+ ++.|...+..+...|.
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i~ 71 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELERELE-AEELKRSLQDVQASLR 71 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHH
Confidence 34455666667777776666666655532 2344443333333333
No 92
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=23.67 E-value=3.2e+02 Score=20.53 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEID 272 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd 272 (305)
.++..+|..|...|..|..+-..+-...+
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~ 38 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPD 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666677777766666666554444333
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.51 E-value=4.4e+02 Score=26.94 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHh
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDV 287 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~ 287 (305)
+..+|..+..-|...+.-...+..+|.++...|..|+...-.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555443333
No 94
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.07 E-value=3.7e+02 Score=20.93 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021914 245 KQDDALSELSGILGELKNMATDMGSEID 272 (305)
Q Consensus 245 eqD~nLdeLs~~l~rLK~mA~~mg~ELd 272 (305)
++...+..|...+..|+.-+...-.+|.
T Consensus 18 ~~~~~~~~l~~~~~~l~~~~~~~~~~I~ 45 (127)
T smart00502 18 ELEDALKQLISIIQEVEENAADVEAQIK 45 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454445444444444444443
No 95
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.71 E-value=2.8e+02 Score=20.69 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhh
Q 021914 248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLN 289 (305)
Q Consensus 248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~ 289 (305)
..|.-....|..|...-.....+|+.....|..|..++..+.
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444455556667777777777777766654
No 96
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.53 E-value=3.2e+02 Score=20.06 Aligned_cols=38 Identities=8% Similarity=0.326 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYL 281 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I 281 (305)
.+++..|..|+..++.++.--..|..+|+.=++-+.+|
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777766666666555544444433
No 97
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=22.51 E-value=2e+02 Score=24.76 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHHHHHHh----hHHHHHHHHhHHhhhhhHHHHHHHhhhhcccccC
Q 021914 136 TKTLVSLHQQ----GEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSR 179 (305)
Q Consensus 136 ~~Tl~~L~~Q----gEQL~rtE~~LD~I~~dLk~aek~L~~Lks~F~~ 179 (305)
+.|..-|.+= .++|.++++.|..|+..|..=|..|.+|.|+-.+
T Consensus 6 ~~tv~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpgLe~v 53 (148)
T PF10152_consen 6 VHTVQFLNRFASVCEEKLSDMEQRLQRLEATLNILEAKLSSIPGLEDV 53 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4566666554 4789999999999999999999999999876654
No 98
>PHA03395 p10 fibrous body protein; Provisional
Probab=22.49 E-value=2.9e+02 Score=22.13 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhHHhhhH
Q 021914 244 SKQDDALSELSGILGELKNMA---TDMGSEIDRQNKSLDYLDDDVDVLNI 290 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA---~~mg~ELd~QN~~LD~I~~kvD~~~~ 290 (305)
...|+.++.|...+..|+.-- .++..-|+.|...|+.|..+++...+
T Consensus 14 kavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~d 63 (87)
T PHA03395 14 KAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITD 63 (87)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456777777777777776433 35677799999999999888886443
No 99
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=5e+02 Score=25.38 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=6.9
Q ss_pred CCCCCCCccc
Q 021914 26 RSNPFDSDDE 35 (305)
Q Consensus 26 ~~npf~~~~~ 35 (305)
..|||+|.++
T Consensus 5 d~NPFadp~~ 14 (313)
T KOG3088|consen 5 DPNPFAEPEL 14 (313)
T ss_pred CCCCCCCccc
Confidence 4799987643
No 100
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.80 E-value=4.3e+02 Score=21.33 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 021914 243 KSKQDDALSELSGILGEL--KNMATDMGSEIDRQNKSLDYLDDDVDVLNIR 291 (305)
Q Consensus 243 ~~eqD~nLdeLs~~l~rL--K~mA~~mg~ELd~QN~~LD~I~~kvD~~~~r 291 (305)
..+++.-|+.|..-|..| +.--..+.-+|.+.+..|+.|...++.++..
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345677777777766666 5555556666666666655555555554433
No 101
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=2.4e+02 Score=26.38 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 254 SGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 254 s~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
...+.++=.+|.+.-.-+..|+-.|..|+.|+..+-.|+-..|.=+.+|-
T Consensus 155 ~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk 204 (231)
T KOG3208|consen 155 IRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIK 204 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHH
Confidence 34555666789999999999999999999999999999999988877764
No 102
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=21.37 E-value=2.4e+02 Score=25.86 Aligned_cols=61 Identities=16% Similarity=0.325 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 244 SKQDDALSELSGIL-GELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 244 ~eqD~nLdeLs~~l-~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
..+++-|+.+...- |-|...--.+..+|..-++.|++++..++....++..+=.+|..+|.
T Consensus 174 ~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~ 235 (239)
T PF07195_consen 174 TRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLIS 235 (239)
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655 77777777888888888888888888888888887777666666553
No 103
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=20.98 E-value=32 Score=29.12 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhHHhhhHHHHHHHHHHHHh
Q 021914 245 KQDDALSELSGILGELKNMATDMGSEIDRQNKSLDY---LDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 245 eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~---I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.....|++....+..|..++-.+-..|..-+...+. |..++.++...|..+...+.+|
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~An~I 109 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAANRI 109 (138)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 356677777777777777777766666666666666 7777777777776666655543
No 104
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.80 E-value=5.6e+02 Score=22.66 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
..+.+.+..+|+.|...+..+..+++..-..|..+..++..-...+..--.++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~ 156 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQS 156 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455666666666666666666666666666666665554444444443333333
No 105
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.69 E-value=6.2e+02 Score=24.27 Aligned_cols=55 Identities=13% Similarity=0.292 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLR 298 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr 298 (305)
..+...|+.|-.-+..+-.-....-.||++=+.-|..+..+++.+..+|...+.-
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555566666666665555554433
No 106
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.61 E-value=1.7e+02 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 021914 258 GELKNMATDMGSEIDRQNKSLDYLDDDVD 286 (305)
Q Consensus 258 ~rLK~mA~~mg~ELd~QN~~LD~I~~kvD 286 (305)
..|+.|-.-+..|++.|.+.|++++..++
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666677788899999999999988764
No 107
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.49 E-value=6.6e+02 Score=22.95 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHH
Q 021914 265 TDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGR 300 (305)
Q Consensus 265 ~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~ 300 (305)
..+-.+|..=...|..+......+..+....-.+++
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~ 179 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIR 179 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 333333333333333333344444444443333333
No 108
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=20.41 E-value=1.4e+02 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021914 252 ELSGILGELKNMATDMGSEIDRQNKS 277 (305)
Q Consensus 252 eLs~~l~rLK~mA~~mg~ELd~QN~~ 277 (305)
+|+..++.|+++|..+|.++..+=..
T Consensus 2 ~i~~~~~~L~~~~~~~~q~vq~~m~a 27 (71)
T PRK15344 2 DIAQLVDMLSHMAHQAGQAINDKMNG 27 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47788999999999999999886553
No 109
>TIGR01845 outer_NodT efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined.
Probab=20.26 E-value=3.6e+02 Score=26.20 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 112 YKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 112 ~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
...++.++...+.+.+++.--+.|..+...+.+..-++...+..+-.+..++..+...|.-|-|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~Llg~ 244 (454)
T TIGR01845 180 DVYHAALASRRKTLELTQKRYAAGVAAASDVRQAEAAVASAEAELPSLDVQIAQARNALAALLGK 244 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCC
Confidence 34566677777888888888888888899999999999999999999999999999988887643
No 110
>PHA03386 P10 fibrous body protein; Provisional
Probab=20.04 E-value=2.4e+02 Score=22.89 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIR 291 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~r 291 (305)
...|...+.|-..|..|..- ..-||.|..+|+.|..+|....+-
T Consensus 15 kavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~i 58 (94)
T PHA03386 15 QEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSI 58 (94)
T ss_pred HHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHh
Confidence 45677778888877777754 556999999999999988876553
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.03 E-value=6.9e+02 Score=22.95 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 021914 242 EKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNI 290 (305)
Q Consensus 242 e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ 290 (305)
+..++-..+..|..-+..|+.--..+...++.|+..|+.|...++.+..
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555666666666666666655555443
Done!