Query 021914
Match_columns 305
No_of_seqs 231 out of 638
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l4a_C S-SNAP25 fusion protein 99.9 1.1E-23 3.8E-28 164.1 9.3 77 99-175 7-83 (83)
2 3b5n_C Protein transport prote 99.9 3E-22 1E-26 151.4 8.8 69 108-176 1-69 (70)
3 1n7s_C SNAP-25A; neuronal snar 99.8 1.5E-20 5.3E-25 145.2 10.8 76 99-174 3-78 (79)
4 1l4a_D S-SNAP25 fusion protein 99.7 5.7E-18 2E-22 133.0 8.5 74 227-305 14-87 (87)
5 3b5n_D Protein transport prote 99.7 2.1E-17 7.3E-22 122.8 8.8 62 240-302 3-64 (64)
6 1sfc_D Protein (SNAP-25B), pro 99.7 3.3E-17 1.1E-21 128.5 10.3 73 228-305 14-86 (87)
7 1nhl_A Synaptosomal-associated 99.7 5.3E-17 1.8E-21 116.7 7.3 54 120-173 1-54 (54)
8 1n7s_D SNAP-25A; neuronal snar 99.7 3.2E-16 1.1E-20 116.6 8.7 61 244-304 6-66 (66)
9 1gl2_D Syntaxin 8, vesicle tra 99.6 7.1E-15 2.4E-19 109.0 7.3 61 244-304 5-65 (65)
10 2nps_D Syntaxin-6; vesicle fus 99.5 2.6E-14 8.8E-19 110.7 6.5 63 243-305 14-76 (82)
11 1gl2_C VTI1B, vesicle transpor 99.4 1.4E-12 4.7E-17 97.0 8.4 61 114-174 4-64 (65)
12 2nps_C Vesicle transport throu 99.0 9.3E-10 3.2E-14 85.0 8.9 62 113-174 13-74 (81)
13 3hd7_B Syntaxin-1A; membrane p 97.0 0.0041 1.4E-07 50.0 9.2 59 244-302 17-75 (109)
14 2nps_B Syntaxin 13, vesicle-as 96.0 0.038 1.3E-06 40.8 8.5 56 247-302 5-60 (71)
15 1jth_B Syntaxin 1A; coiled-coi 95.9 0.061 2.1E-06 40.3 9.2 58 246-303 8-65 (77)
16 1gl2_B Syntaxin 7; membrane pr 95.8 0.055 1.9E-06 39.3 8.5 56 247-302 8-63 (65)
17 3b5n_B Protein SSO1; snare com 95.7 0.08 2.8E-06 38.9 9.2 58 246-303 8-65 (69)
18 1n7s_B Syntaxin 1A; neuronal s 95.5 0.13 4.4E-06 37.6 9.4 58 246-303 10-67 (68)
19 1sfc_B Protein (syntaxin 1A), 95.2 0.14 4.8E-06 38.9 9.2 58 246-303 19-76 (83)
20 2nps_B Syntaxin 13, vesicle-as 94.3 0.19 6.4E-06 37.0 7.6 47 126-172 13-59 (71)
21 3b5n_D Protein transport prote 94.1 0.5 1.7E-05 34.4 9.4 56 115-173 9-64 (64)
22 1gl2_B Syntaxin 7; membrane pr 94.0 0.27 9.1E-06 35.6 7.9 46 126-171 16-61 (65)
23 3hd7_B Syntaxin-1A; membrane p 92.8 0.91 3.1E-05 36.1 9.8 48 126-173 28-75 (109)
24 3b5n_B Protein SSO1; snare com 92.5 0.93 3.2E-05 33.0 8.9 47 126-172 17-63 (69)
25 1n7s_B Syntaxin 1A; neuronal s 92.1 1.2 4E-05 32.3 8.9 46 126-171 19-64 (68)
26 1nhl_A Synaptosomal-associated 91.8 0.61 2.1E-05 32.6 6.8 47 255-301 7-53 (54)
27 1l4a_D S-SNAP25 fusion protein 91.8 0.63 2.1E-05 35.7 7.5 62 105-173 23-84 (87)
28 1jth_B Syntaxin 1A; coiled-coi 91.5 1.3 4.6E-05 32.8 8.9 48 126-173 17-64 (77)
29 1sfc_B Protein (syntaxin 1A), 90.4 2.6 8.8E-05 31.7 9.7 47 126-172 28-74 (83)
30 1n7s_C SNAP-25A; neuronal snar 89.9 2 6.8E-05 32.3 8.5 58 246-303 18-78 (79)
31 1n7s_D SNAP-25A; neuronal snar 89.8 2.4 8.3E-05 30.3 8.7 43 131-173 22-64 (66)
32 1sfc_D Protein (SNAP-25B), pro 89.2 2.5 8.6E-05 32.2 8.8 44 131-174 41-84 (87)
33 3p8c_F ABL interactor 2; actin 87.3 3.2 0.00011 35.5 9.0 46 121-166 56-101 (159)
34 1gl2_C VTI1B, vesicle transpor 86.6 3.8 0.00013 29.5 7.9 56 248-303 9-64 (65)
35 3b5n_C Protein transport prote 85.8 3.2 0.00011 30.7 7.2 55 248-302 9-66 (70)
36 1l4a_C S-SNAP25 fusion protein 82.7 3 0.0001 31.8 6.2 56 246-301 22-80 (83)
37 2nps_D Syntaxin-6; vesicle fus 82.3 5.1 0.00017 30.0 7.3 57 115-174 18-74 (82)
38 1gl2_D Syntaxin 8, vesicle tra 81.8 7.9 0.00027 27.5 7.8 43 131-173 21-63 (65)
39 2nps_C Vesicle transport throu 81.3 6 0.0002 29.7 7.3 57 247-303 18-74 (81)
40 2xhe_B Syntaxin1; exocytosis, 66.9 0.95 3.2E-05 41.2 -0.6 56 247-302 216-271 (279)
41 1dn1_B Syntaxin 1A, syntaxin b 60.0 2 6.9E-05 39.0 0.2 58 244-301 196-253 (267)
42 3efg_A Protein SLYX homolog; x 54.5 30 0.001 25.8 5.9 53 244-296 10-62 (78)
43 2xhe_B Syntaxin1; exocytosis, 54.4 2.2 7.5E-05 38.8 -0.5 51 122-172 220-270 (279)
44 3c98_B Syntaxin-1A; protein co 52.3 3 0.0001 36.5 -0.0 49 244-292 208-256 (279)
45 1urq_A M-tomosyn isoform; tran 50.2 56 0.0019 23.3 6.6 54 251-304 7-60 (63)
46 2jee_A YIIU; FTSZ, septum, coi 49.9 81 0.0028 23.8 8.9 62 244-305 13-77 (81)
47 3a7p_A Autophagy protein 16; c 47.4 1.1E+02 0.0039 25.6 9.0 56 247-302 67-122 (152)
48 1sfc_A VAMP 2, protein (synapt 47.0 68 0.0023 24.6 7.1 48 127-174 38-85 (96)
49 3p8c_F ABL interactor 2; actin 46.3 77 0.0026 26.8 7.8 51 250-300 56-106 (159)
50 1n7s_A Vesicle-associated memb 44.0 79 0.0027 22.0 8.0 52 123-174 8-59 (63)
51 3b5n_A Synaptobrevin homolog 1 42.3 84 0.0029 21.8 7.8 49 126-174 9-57 (61)
52 3oja_B Anopheles plasmodium-re 41.8 1.3E+02 0.0045 29.1 10.1 58 247-304 522-579 (597)
53 3hd7_A Vesicle-associated memb 41.5 1.1E+02 0.0037 23.1 7.5 32 270-301 27-58 (91)
54 1sfc_A VAMP 2, protein (synapt 41.5 1.1E+02 0.0039 23.3 7.6 33 270-302 52-84 (96)
55 2nps_A VAMP-4, vesicle-associa 41.2 80 0.0027 22.8 6.4 48 127-174 16-63 (74)
56 1l4a_A Synaptobrevin; snare, s 40.6 42 0.0015 24.8 4.8 48 127-174 23-70 (80)
57 1dn1_B Syntaxin 1A, syntaxin b 40.3 15 0.00052 33.1 2.7 47 126-172 207-253 (267)
58 1ic2_A Tropomyosin alpha chain 39.4 1.1E+02 0.0038 22.4 9.9 58 244-301 16-73 (81)
59 3g67_A Methyl-accepting chemot 32.1 2.5E+02 0.0086 24.4 10.1 59 107-165 118-176 (213)
60 3ghg_C Fibrinogen gamma chain; 30.0 3.8E+02 0.013 25.8 10.9 82 99-181 36-139 (411)
61 1gmj_A ATPase inhibitor; coile 28.9 1.3E+02 0.0044 22.8 5.8 33 265-297 47-79 (84)
62 3swy_A Cyclic nucleotide-gated 28.5 53 0.0018 22.2 3.2 24 280-303 2-25 (46)
63 3hfe_A Potassium voltage-gated 27.8 54 0.0019 20.4 2.9 19 146-164 9-27 (31)
64 3hd7_A Vesicle-associated memb 26.8 2E+02 0.0069 21.5 8.2 49 126-174 12-60 (91)
65 3q8t_A Beclin-1; autophagy, AT 26.3 2.2E+02 0.0074 21.7 10.4 68 238-305 29-96 (96)
66 2ch7_A Methyl-accepting chemot 25.9 3.3E+02 0.011 23.7 9.4 27 109-135 167-193 (309)
67 1ytz_T Troponin T; muscle, THI 25.7 2E+02 0.0069 22.6 6.7 39 250-288 51-89 (107)
68 2v71_A Nuclear distribution pr 25.5 3.3E+02 0.011 23.5 10.1 57 244-300 45-112 (189)
69 3na7_A HP0958; flagellar bioge 24.7 3.5E+02 0.012 23.6 9.5 55 246-300 30-84 (256)
70 1j1d_B Troponin T, TNT; THIN f 24.5 2E+02 0.0068 22.6 6.5 45 258-302 45-89 (106)
71 3b5n_A Synaptobrevin homolog 1 24.4 1.8E+02 0.0061 20.1 8.4 52 251-302 5-56 (61)
72 1deq_A Fibrinogen (alpha chain 23.8 1.8E+02 0.0061 28.0 7.1 71 75-156 84-157 (390)
73 3nmd_A CGMP dependent protein 23.8 2.2E+02 0.0075 20.9 6.6 48 130-177 23-70 (72)
74 3nmd_A CGMP dependent protein 23.4 2.2E+02 0.0077 20.9 6.4 45 258-302 22-66 (72)
75 1n7s_A Vesicle-associated memb 23.2 1.9E+02 0.0065 20.0 8.6 54 249-302 5-58 (63)
76 1jcd_A Major outer membrane li 23.1 1.9E+02 0.0064 19.9 7.1 16 247-262 10-25 (52)
77 1ek9_A Outer membrane protein 22.3 1.8E+02 0.0063 26.1 6.9 65 112-176 124-188 (428)
78 1m1j_B Fibrinogen beta chain; 22.2 5E+02 0.017 25.4 10.2 15 244-258 103-117 (464)
79 1kmi_Z CHEZ, chemotaxis protei 21.9 3.2E+02 0.011 23.7 8.1 73 101-173 46-135 (214)
80 1gl2_A Endobrevin; membrane pr 21.6 2.1E+02 0.0073 20.0 7.8 44 126-169 16-59 (65)
81 3c98_B Syntaxin-1A; protein co 21.4 41 0.0014 29.0 2.1 53 115-167 208-260 (279)
82 3swf_A CGMP-gated cation chann 21.0 73 0.0025 23.7 3.0 24 280-303 4-27 (74)
83 1j1d_C Troponin I, TNI; THIN f 20.6 2.8E+02 0.0097 22.6 6.9 36 253-288 70-105 (133)
84 1a92_A Delta antigen; leucine 20.6 1.6E+02 0.0055 20.1 4.4 41 138-178 5-48 (50)
85 1yc9_A VCEC, multidrug resista 20.4 2.2E+02 0.0076 25.9 7.1 66 111-176 161-226 (442)
No 1
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.90 E-value=1.1e-23 Score=164.10 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcc
Q 021914 99 ENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGG 175 (305)
Q Consensus 99 e~q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks 175 (305)
..++|++|++++++++++|++||+|||++|++++++|++|+++|++|||||+|||++||.|++||++|+++|++|++
T Consensus 7 ~~~~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~~ 83 (83)
T 1l4a_C 7 PKTELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGMEK 83 (83)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC---
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999973
No 2
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.87 E-value=3e-22 Score=151.38 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 108 DYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 108 q~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
|+|++++++|++||+|||++|+|++++|++|+++|++|||||+|||++||.|++++++|+++|++||++
T Consensus 1 ~eir~~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 1 GSIKFTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467899999999999999999999999999999999999999999999999999999999999999864
No 3
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.83 E-value=1.5e-20 Score=145.19 Aligned_cols=76 Identities=29% Similarity=0.443 Sum_probs=73.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 99 ENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 99 e~q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
.+++|++|++++.++.++|++||++||++|+|++++|++|+++|++|||||.||+++||.|+.+|++|+|+|++|.
T Consensus 3 ~~~~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 3 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.73 E-value=5.7e-18 Score=132.98 Aligned_cols=74 Identities=28% Similarity=0.532 Sum_probs=65.8
Q ss_pred CCCCCCCcHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 021914 227 AQLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK 305 (305)
Q Consensus 227 ~~~~~~~nd~ee~e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~k 305 (305)
.|+...+++..+ .+||++|++|+.+|++||+||++||.||+.||++||+|+++||+++.+|..+|+|+++||+|
T Consensus 14 ~~i~~~~~d~~e-----~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 14 GYVTRITNDARE-----DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp SSSCCSSCSHHH-----HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred hHHhccchHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345556776433 77999999999999999999999999999999999999999999999999999999999986
No 5
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.1e-17 Score=122.76 Aligned_cols=62 Identities=29% Similarity=0.436 Sum_probs=59.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 240 EVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 240 e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
++| ++||+||++|+.+|++||+||++||+||+.||++||+|+.|||.++.+|..+++|+.+|
T Consensus 3 ~~E-~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 3 EME-LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHH-HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344 88999999999999999999999999999999999999999999999999999999886
No 6
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.71 E-value=3.3e-17 Score=128.49 Aligned_cols=73 Identities=36% Similarity=0.638 Sum_probs=65.7
Q ss_pred CCCCCCcHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 021914 228 QLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK 305 (305)
Q Consensus 228 ~~~~~~nd~ee~e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~k 305 (305)
|..+.+++..+ .+||++|++|+.+|++||+||++||.||+.||++||+|+.+||+++.+|..+++|+++|++|
T Consensus 14 yi~~~~~d~~e-----~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 14 FIRRVTNDARE-----NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp CSCCSSCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 44456666432 78999999999999999999999999999999999999999999999999999999999986
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.68 E-value=5.3e-17 Score=116.72 Aligned_cols=54 Identities=30% Similarity=0.369 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 120 QVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 120 ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
||+||+++|+|++++|++|+++|++|||||.||+++||.|+.+|++|+|+|++|
T Consensus 1 st~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 1 STRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999999986
No 8
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.65 E-value=3.2e-16 Score=116.61 Aligned_cols=61 Identities=41% Similarity=0.747 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
.+||++|++|+.+|++||+||++||.||+.||++||+|+.+||+++.+|..+++|+++||+
T Consensus 6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll~ 66 (66)
T 1n7s_D 6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999999999999999999999999999999986
No 9
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.55 E-value=7.1e-15 Score=108.97 Aligned_cols=61 Identities=28% Similarity=0.406 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
.+||++|+.|+..|++||+||.+||.||+.||.+||+|++++|++..+|..+++|+.+|++
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999999999999999999999999999999999875
No 10
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=110.74 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 021914 243 KSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK 305 (305)
Q Consensus 243 ~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~k 305 (305)
..+||++|+.|+..|++||.||++||.||+.||++||+|+++||++..+|..+++|+++|+++
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999999999863
No 11
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.38 E-value=1.4e-12 Score=96.96 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 114 AEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 114 ~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
.++|++++.+|+++|+|++++|+.|+.+|+.|+|||.+|+..|+.|+.++.+|.++|++|.
T Consensus 4 L~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 4 MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 3688999999999999999999999999999999999999999999999999999999873
No 12
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.03 E-value=9.3e-10 Score=85.04 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 113 KAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 113 ~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
+.+.|+++..++.++|.|+|++|..|+..|+.|+|+|.+++..|+.++.++.+|.++|++|.
T Consensus 13 ~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~ 74 (81)
T 2nps_C 13 RLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGML 74 (81)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999985
No 13
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.97 E-value=0.0041 Score=49.95 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
++-++.+..|...+..|+.|-.+|+..+..|.++||+|+..++.+...+..+++.+++-
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999988764
No 14
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=96.01 E-value=0.038 Score=40.83 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
...+..|...|..|+.|=.+|+.=+..|-.+||+|+..|+.+...+..++..+.+-
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 60 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRA 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999999999999999999999999999888764
No 15
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=95.86 E-value=0.061 Score=40.25 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
-...+..|...+..|+.|=.+|+.=+..|..+||+|+..|+.+...+..++..+.+-.
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999887643
No 16
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=95.81 E-value=0.055 Score=39.32 Aligned_cols=56 Identities=20% Similarity=0.398 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
...+..|...+..|+.|=.+|+.=+..|-.+||+|+..|+.+...+..++..+.+-
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999999999999999999999999999999988763
No 17
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.73 E-value=0.08 Score=38.86 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
-...+..|...+..|+.|=.+|+.=+..|..+||+|+..|+.+...+..++..+++-.
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 8 RHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999999999999999999999999999999999887643
No 18
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=95.46 E-value=0.13 Score=37.58 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
-...+..|...+..|+.|=.+|+.=+..|..+||+|+..|+.+...+..++..+++-.
T Consensus 10 R~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 10 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888999999999999999999999999999999999999999999999987743
No 19
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=95.19 E-value=0.14 Score=38.87 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
=...+..|...+..|+.|=.+|+.=+..|-.+||+|+..|+.+...+..++..+.+-.
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999887643
No 20
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=94.31 E-value=0.19 Score=37.03 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
+-+.|-.++=..-+.+.+.|||.|++||.+++....++..|...|..
T Consensus 13 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 59 (71)
T 2nps_B 13 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQR 59 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666777788899999999999999999999999888754
No 21
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.5 Score=34.37 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 115 EDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 115 qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
.+-++....+++ .-...|.++-.+|..|-++|.+++..+|..+..+..+.+.|+.|
T Consensus 9 D~nLd~l~~~~~---rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 9 DRNLDQIQQVSN---RLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444444433 34556888999999999999999999999999999999988754
No 22
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=94.04 E-value=0.27 Score=35.64 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLG 171 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~ 171 (305)
+-+.|-.++=..-+.+.+.|||.|++|+.++.....+...|.+.|.
T Consensus 16 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 61 (65)
T 1gl2_B 16 ADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667777889999999999999999999999998875
No 23
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=92.78 E-value=0.91 Score=36.09 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
+-+.|-.++-..-+.+.++|||.|+++|.+++....++..|.+.|..-
T Consensus 28 ~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 28 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777888899999999999999999999999998887644
No 24
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=92.55 E-value=0.93 Score=33.02 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
+-+.|-.++=..-+.+.+.|||.|++|+.+++....+...|...|..
T Consensus 17 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (69)
T 3b5n_B 17 KSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDK 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777788899999999999999999999999887753
No 25
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=92.06 E-value=1.2 Score=32.34 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLG 171 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~ 171 (305)
+-+.|-.++=..-+.+...|||.|++|+.++.....+...|...|.
T Consensus 19 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 19 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666667777889999999999999999999999988875
No 26
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=91.82 E-value=0.61 Score=32.61 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 255 GILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 255 ~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
..+..-..+|..+-.+|..|-++|+++...+|..+..++.+.+-+..
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 34456677888999999999999999999999999999888765543
No 27
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=91.80 E-value=0.63 Score=35.73 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 105 ELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 105 eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
+.++++ ++-++....+|.- -..+|...-.+|..|.+.|.+++..+|..+..++.+.+.++.|
T Consensus 23 ~~e~eq----D~~Ld~ls~~l~r---Lk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 23 AREDDM----ENNMKEVSSMIGN---LRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHH----HHHHHHHHTTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHH----HHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444 4444444444443 3445788889999999999999999999999999998887765
No 28
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=91.53 E-value=1.3 Score=32.77 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
+-+.|-.++=..-+.+...|||.|++||.+++....+...|...|..-
T Consensus 17 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (77)
T 1jth_B 17 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666667777888999999999999999999999998887643
No 29
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=90.42 E-value=2.6 Score=31.73 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
+-+.|-.++=..-+.+.+.|||.|++||.++.....+...|...|..
T Consensus 28 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 74 (83)
T 1sfc_B 28 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777788899999999999999999999999887753
No 30
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=89.85 E-value=2 Score=32.34 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 246 QDDALSELSGIL---GELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 246 qD~nLdeLs~~l---~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
++.-++-+-.++ ..-+.+|..+-.+|..|-++|+++...+|..+..|..+.+-+..+-
T Consensus 18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 344454444444 4556688888999999999999999999999999999987776653
No 31
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=89.79 E-value=2.4 Score=30.34 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 131 IREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 131 aee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
-..+|...-.+|..|.+.|.+++..+|.....|+.+-+.++.|
T Consensus 22 lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 22 LRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445777888999999999999999999999999998887755
No 32
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=89.16 E-value=2.5 Score=32.15 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 131 IREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 131 aee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
-..+|...-.+|..|.+.|.+++..+|..+..|+.+-+.++.|-
T Consensus 41 Lk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 41 LRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34457778889999999999999999999999999998887663
No 33
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=87.30 E-value=3.2 Score=35.47 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHH
Q 021914 121 VHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRG 166 (305)
Q Consensus 121 T~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~a 166 (305)
|+.-..+|+.+..+|.+.+.+|+-|.++|.+.|..+..|.+....=
T Consensus 56 ~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih 101 (159)
T 3p8c_F 56 TQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIH 101 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445578999999999999999999999999999999999887653
No 34
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=86.59 E-value=3.8 Score=29.55 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 248 DALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 248 ~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
+-|..--.++-.-..+|..+-.+|-.|-++|.+....++.++..|....+-++.+.
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 45566666777888899999999999999999999999999999999887766543
No 35
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=85.83 E-value=3.2 Score=30.66 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 248 DALSELSGIL---GELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 248 ~nLdeLs~~l---~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
+.|+--..+| ..-...|..--.+|..|-++|++++..+|..+..++.+.+.++.|
T Consensus 9 esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 9 SSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444 344557777888999999999999999999999999999998876
No 36
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=82.73 E-value=3 Score=31.78 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 246 QDDALSELSGILG---ELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 246 qD~nLdeLs~~l~---rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
.+..|+-.-.+|. .-+..|..--.+|..|-++|++|...+|..+..++.+.+.+..
T Consensus 22 ~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 22 TDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555665555543 4455788888999999999999999999988888777555443
No 37
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=82.29 E-value=5.1 Score=29.98 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 115 EDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 115 qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
++.++.....+.. -..+|..-=.+|..|.+.|++++..+|.....|+.+-+.++.|-
T Consensus 18 D~~Ld~L~~~v~~---LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~ 74 (82)
T 2nps_D 18 DEQLELVSGSIGV---LKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVS 74 (82)
T ss_dssp CCTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333 34457777889999999999999999999999999998887663
No 38
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=81.79 E-value=7.9 Score=27.49 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhh
Q 021914 131 IREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSL 173 (305)
Q Consensus 131 aee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~L 173 (305)
-..+|..--.+|..|.+.|++++..+|.....|+.+-+.++.|
T Consensus 21 lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 21 QKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445777788999999999999999999999999998887754
No 39
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=81.31 E-value=6 Score=29.74 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
.+-|.+--.++-.-..+|..+-.+|-.|-+.|.+....++.++..|....+-++.+.
T Consensus 18 ~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~ 74 (81)
T 2nps_C 18 SRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGML 74 (81)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 345666667777888999999999999999999999999999999999987777654
No 40
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=66.95 E-value=0.95 Score=41.21 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
...+..|...|..|+.|=.+|+.=+..|-.+||+|+..|+.+...|..++..+.+-
T Consensus 216 ~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 216 HKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999988877653
No 41
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=60.03 E-value=2 Score=39.02 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
.+=...+..|...|..|+.|=.+|+.=+..|-.+||+|+..|+.+...+..++..+.+
T Consensus 196 ~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k 253 (267)
T 1dn1_B 196 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 253 (267)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999999999999999999999887776665555443
No 42
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.50 E-value=30 Score=25.80 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDAN 296 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~n 296 (305)
..+++-|.+|..-|.-+-..--.++..|-+|...||+|...+..+..|+....
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567777787777777777778888888888888888888888877776543
No 43
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=54.44 E-value=2.2 Score=38.77 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 122 HGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 122 ~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
.+.-+-+.|-.++=..-+.+.+.|||.|++||.++..+..++..|...|..
T Consensus 220 ~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~k 270 (279)
T 2xhe_B 220 QQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQ 270 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555566666666677899999999999999999999988887753
No 44
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=52.30 E-value=3 Score=36.45 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRV 292 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri 292 (305)
.+....|..|...+..|..+-..|..-++.|...+++|...|+.+...+
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v 256 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 256 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999999999999999888765443
No 45
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=50.19 E-value=56 Score=23.30 Aligned_cols=54 Identities=7% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 251 SELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 251 deLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
..|..-++..+++...--.-|-+=.+.|+.|.++++.+...=..-.+...+|.+
T Consensus 7 ~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 7 EGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555677888999999887776666666655543
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.89 E-value=81 Score=23.81 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 021914 244 SKQDDALSELSG---ILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK 305 (305)
Q Consensus 244 ~eqD~nLdeLs~---~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~k 305 (305)
.++...++.|.- -+..||.--..+..|.+.=...-+.+......+......-..|++.||||
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777776665 55666666555555544433444447777778888888888999998875
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.44 E-value=1.1e+02 Score=25.61 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
...+..|-.-+..|..--.++..||...++.++.|.+-...+...+..+..++++|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888889999999999999999999999999999988888876
No 48
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=47.00 E-value=68 Score=24.60 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 127 IAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 127 laeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
-+.|...+...++..+.+-||+|+......+.+...-..=.+....|+
T Consensus 38 eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~ 85 (96)
T 1sfc_A 38 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778888899999999999999998888888777777777776
No 49
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=46.29 E-value=77 Score=26.85 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHH
Q 021914 250 LSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGR 300 (305)
Q Consensus 250 LdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~ 300 (305)
-..|.++.-.+..+|..|-.=||.|...|..++..|..+..++.....++.
T Consensus 56 ~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EKva 106 (159)
T 3p8c_F 56 TQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVA 106 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888999999999999999999999999999999988887666554
No 50
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=44.00 E-value=79 Score=22.03 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 123 GCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 123 rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
..-.-+.|...+...++..+-+-||+|+......+.+...-..=.+....|+
T Consensus 8 ~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~ 59 (63)
T 1n7s_A 8 QTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567788888999999999999999988888887776655454444443
No 51
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=42.34 E-value=84 Score=21.83 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
.-+.|...+...++..+-+-||+|+......+.+...-..=.+....|+
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~ 57 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVR 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999888888877766555444444443
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.77 E-value=1.3e+02 Score=29.11 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 247 DDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
...+..+...+..++.....+..|+++-.+.++.....+..+...+...+++++.|+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444545555555555555555555555555555555555566666655543
No 53
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=41.52 E-value=1.1e+02 Score=23.07 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 270 EIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 270 ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
.+=+-.+.||.|.++++.+...=..-.+..++
T Consensus 27 kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~ 58 (91)
T 3hd7_A 27 KVLERDQKLSELDDRADALQAGASQFETSAAK 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566777777777776654444444443
No 54
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=41.47 E-value=1.1e+02 Score=23.29 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=21.9
Q ss_pred HHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 270 EIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 270 ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.|-.--+.||.|.++++.+...=..-.+..++|
T Consensus 52 kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl 84 (96)
T 1sfc_A 52 KVLERDQKLSELDDRADALQAGASQFETSAAKL 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446778888888888877666555555554
No 55
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=41.21 E-value=80 Score=22.83 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 127 IAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 127 laeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
-+.|...+...++..+-+-||.|+......+.+...-..=.+....|+
T Consensus 16 el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~ 63 (74)
T 2nps_A 16 QVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 63 (74)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999999998888888877777676667776
No 56
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=40.58 E-value=42 Score=24.77 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 127 IAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 127 laeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
-+.|...+...++..+-+-||+|+......+.+...-..=.+....|+
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~ 70 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLK 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788889999999999999999888887776665555555665
No 57
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=40.31 E-value=15 Score=33.13 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhh
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGS 172 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~ 172 (305)
+-+.|-.++=..-+.+.+.|||.|++||.++.....++..|...|..
T Consensus 207 ~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k 253 (267)
T 1dn1_B 207 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 253 (267)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666678899999999999999998888877766643
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.41 E-value=1.1e+02 Score=22.40 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRR 301 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~k 301 (305)
+.--+.++.+..-+.....-+.....||..-++.|--|.+.+|++..++..++.++..
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666667788889999999999999999999999999999988764
No 59
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=32.13 E-value=2.5e+02 Score=24.35 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHH
Q 021914 107 EDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSR 165 (305)
Q Consensus 107 eq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~ 165 (305)
-.+++..+++|..++...-.++.+..+....+...+..-.+.+..+...+..+...+..
T Consensus 118 A~Evr~La~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (213)
T 3g67_A 118 ANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMEN 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666665555555555544444444444444444444444433
No 60
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=29.98 E-value=3.8e+02 Score=25.83 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH----------HHHhhHHHHHHHHhH
Q 021914 99 ENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEI------------REDATKTLVS----------LHQQGEQITRTHYTA 156 (305)
Q Consensus 99 e~q~v~eleq~~~~~~qeT~~ST~rsLrlaeEa------------ee~G~~Tl~~----------L~~QgEQL~rtE~~L 156 (305)
.+.+|++|+..+....+.|.. +..-+..+..+ +-+...+-.| |..|..+|.-.+..+
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~-~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~ 114 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSE-VKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIY 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346888888777555554443 22222222222 1122222222 334455555555555
Q ss_pred HhhhhhHHHHHHHhhhhcccccCCC
Q 021914 157 ASIDHDLSRGEKLLGSLGGMFSRTW 181 (305)
Q Consensus 157 D~I~~dLk~aek~L~~Lks~F~~~~ 181 (305)
...+..+..-...+..|...|..++
T Consensus 115 ~~~~~~i~~L~~~v~~l~~~~~~~~ 139 (411)
T 3ghg_C 115 NSNNQKIVNLKEKVAQLEAQCQEPC 139 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5555544444445555556666544
No 61
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.86 E-value=1.3e+02 Score=22.85 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 021914 265 TDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANL 297 (305)
Q Consensus 265 ~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nk 297 (305)
.-|-.||+.+-+.|+++...+++...+|....+
T Consensus 47 kkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344789999999999999999888888876643
No 62
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.54 E-value=53 Score=22.21 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=16.2
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 280 YLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 280 ~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
+|+++|+++...|.....|+.+||
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLl 25 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776665
No 63
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=27.75 E-value=54 Score=20.37 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=15.3
Q ss_pred hHHHHHHHHhHHhhhhhHH
Q 021914 146 GEQITRTHYTAASIDHDLS 164 (305)
Q Consensus 146 gEQL~rtE~~LD~I~~dLk 164 (305)
|-.|+|+|..+-.|++.|.
T Consensus 9 GaRLnRvE~k~t~MD~kL~ 27 (31)
T 3hfe_A 9 GARLNRVEDKVTQLDQRLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5688899988888887765
No 64
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=26.82 E-value=2e+02 Score=21.54 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhc
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLG 174 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lk 174 (305)
.-+.|...+...+...+-+-||+|+......+.+...-..=.+..+.|+
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~ 60 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 60 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888889999999999999999998888887766666655555
No 65
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.31 E-value=2.2e+02 Score=21.71 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=58.6
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 021914 238 KIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLGK 305 (305)
Q Consensus 238 e~e~e~~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~k 305 (305)
+++.+...+|..|..+-.-+.+|..--...-.|-......+-.+.+..+.++.++..+...+.+|-+|
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K~ 96 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44556677899999999888888888888888888888889999999999999999999999998775
No 66
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=25.95 E-value=3.3e+02 Score=23.71 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021914 109 YAVYKAEDTTKQVHGCLKIAEEIREDA 135 (305)
Q Consensus 109 ~~~~~~qeT~~ST~rsLrlaeEaee~G 135 (305)
+++..+++|..++...-.++.+....+
T Consensus 167 eIr~LA~~t~~~~~~i~~v~~~i~~~a 193 (309)
T 2ch7_A 167 EIRKLAEESQQASENVRRVVNEIRSIA 193 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555444544444433
No 67
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.70 E-value=2e+02 Score=22.56 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 021914 250 LSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVL 288 (305)
Q Consensus 250 LdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~ 288 (305)
..+|..-|..|-.-=-+|...+..|+--|..|+.+|..+
T Consensus 51 ~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 51 AKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 334444444444444555555555555555555544443
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.45 E-value=3.3e+02 Score=23.51 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhhhhHHhhhHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMGSEIDRQNKS-----------LDYLDDDVDVLNIRVKDANLRGR 300 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~-----------LD~I~~kvD~~~~ri~~~nkr~~ 300 (305)
.+++..|..+..-+..|+.-...+..|++.-..- +..|...+..+........++++
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999988888888775333 44444444444444444444443
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.65 E-value=3.5e+02 Score=23.63 Aligned_cols=55 Identities=5% Similarity=-0.011 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHH
Q 021914 246 QDDALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGR 300 (305)
Q Consensus 246 qD~nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~ 300 (305)
+-..|..|..-+..|+.-...+..+|+.-...+.++...++.+..+|.....++.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666677777777777777777777777777777766664
No 70
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.51 E-value=2e+02 Score=22.59 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 258 GELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 258 ~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
..|+.++..+..-|..=...-=+|+.+|.+.+..|...+.|+.-|
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 456666666666665555555566666666666666666666654
No 71
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=24.41 E-value=1.8e+02 Score=20.08 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 251 SELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 251 deLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
..|-.-|...+.+-..-=..|=.--+.||.|.++++.+...=..-.+..++|
T Consensus 5 ~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l 56 (61)
T 3b5n_A 5 AELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRV 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344433333333455556778888888888777655555555544
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.82 E-value=1.8e+02 Score=28.00 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=36.2
Q ss_pred cccchhchHHHhhhhhhccCCCCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 021914 75 VSSYSLTSAARNKYRNDFRDSGGLEN---QSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITR 151 (305)
Q Consensus 75 ~~~~~~~~~~r~~y~~~~~~~~~~e~---q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~r 151 (305)
+++|...-.-.+..+.++......++ |--++|++.|.+.+.....-.. -|++++-. |..|...|.|
T Consensus 84 ~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~----------l~~q~~kiqR 152 (390)
T 1deq_A 84 KDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKN----------VRDQLVDMKR 152 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH----------HHHHHHHHHH
Confidence 33444444444444555544333333 6666777766555443333333 55555544 5566666666
Q ss_pred HHHhH
Q 021914 152 THYTA 156 (305)
Q Consensus 152 tE~~L 156 (305)
+|..+
T Consensus 153 LE~~I 157 (390)
T 1deq_A 153 LEVDI 157 (390)
T ss_pred HHHHH
Confidence 66555
No 73
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.82 E-value=2.2e+02 Score=20.94 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcccc
Q 021914 130 EIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMF 177 (305)
Q Consensus 130 Eaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~F 177 (305)
+=+.....-.++|-.+-+.|..-+..|+.-+..++.=+..|..++|+|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 333344445566888888999999999999999998888888888877
No 74
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.44 E-value=2.2e+02 Score=20.90 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 258 GELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 258 ~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
..|+.+-..=-.||-.+...|..++..++.-+..|......+.++
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333445566666666666666666666666665555543
No 75
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=23.24 E-value=1.9e+02 Score=19.99 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHh
Q 021914 249 ALSELSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVLNIRVKDANLRGRRL 302 (305)
Q Consensus 249 nLdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~~~ri~~~nkr~~kL 302 (305)
.|..|-.-|...+.+-..-=..|-.-.+.||.|.++++.+...=..-.+.+++|
T Consensus 5 ~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l 58 (63)
T 1n7s_A 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455566778888888888877665555555554
No 76
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.14 E-value=1.9e+02 Score=19.91 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021914 247 DDALSELSGILGELKN 262 (305)
Q Consensus 247 D~nLdeLs~~l~rLK~ 262 (305)
...++.|+.-|..|..
T Consensus 10 ss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 10 SSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 77
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=22.32 E-value=1.8e+02 Score=26.13 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 112 YKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 112 ~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
...++.+......+.+++.--+.|..+...+.+-.-++...+..+..+..++..+...|..|-|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~~~~~l~~a~~~~~~a~~~L~~llg~ 188 (428)
T 1ek9_A 124 SYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQITGN 188 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44566666777777777777777888888888888889999999999999999998888877543
No 78
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.21 E-value=5e+02 Score=25.37 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021914 244 SKQDDALSELSGILG 258 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~ 258 (305)
++++..|++|++...
T Consensus 103 qeLe~~l~~lsn~Ts 117 (464)
T 1m1j_B 103 RDLKDRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhh
Confidence 444555555554333
No 79
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=21.92 E-value=3.2e+02 Score=23.71 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHhhHHHHHHHHhHHhhhhhH
Q 021914 101 QSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDAT---KTLVSL--------------HQQGEQITRTHYTAASIDHDL 163 (305)
Q Consensus 101 q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~---~Tl~~L--------------~~QgEQL~rtE~~LD~I~~dL 163 (305)
..+-.......|+.+.|-.++.+.|-.++.+..... ..+..| ....+-+++|+.-|..+....
T Consensus 46 ~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~~~~~l~~~~~~~l~~v~~~~ 125 (214)
T 1kmi_Z 46 EAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHT 125 (214)
T ss_dssp TTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777777777754432 222333 344555566666666665555
Q ss_pred HHHHHHhhhh
Q 021914 164 SRGEKLLGSL 173 (305)
Q Consensus 164 k~aek~L~~L 173 (305)
.....+|.+|
T Consensus 126 ~~~~~~l~eI 135 (214)
T 1kmi_Z 126 SFTNAQLLKI 135 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 80
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.64 E-value=2.1e+02 Score=19.97 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHH
Q 021914 126 KIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKL 169 (305)
Q Consensus 126 rlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~ 169 (305)
.-+.|...+...++..+-.-||+|+......+.+...-..=.+.
T Consensus 16 ~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 16 SEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788889999999999999998888887776665444433
No 81
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=21.38 E-value=41 Score=28.96 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHH
Q 021914 115 EDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGE 167 (305)
Q Consensus 115 qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~ae 167 (305)
++...........+.+..+.-..-+....+|++.+++|+.++..+......+.
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~ 260 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV 260 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666667777777777889999999999999998876554443
No 82
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.96 E-value=73 Score=23.68 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=13.0
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHhh
Q 021914 280 YLDDDVDVLNIRVKDANLRGRRLL 303 (305)
Q Consensus 280 ~I~~kvD~~~~ri~~~nkr~~kLl 303 (305)
.|+++|+++...|.....|+.+||
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLL 27 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARIL 27 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554
No 83
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.62 E-value=2.8e+02 Score=22.61 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 021914 253 LSGILGELKNMATDMGSEIDRQNKSLDYLDDDVDVL 288 (305)
Q Consensus 253 Ls~~l~rLK~mA~~mg~ELd~QN~~LD~I~~kvD~~ 288 (305)
|..-|..|-.-=.++...+..|+--|..|+.+|..+
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 333333344344444444444444444444444433
No 84
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.58 E-value=1.6e+02 Score=20.14 Aligned_cols=41 Identities=12% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHHHhhHHHHHHHHhHHhhhhhHHHHHH---Hhhhhccccc
Q 021914 138 TLVSLHQQGEQITRTHYTAASIDHDLSRGEK---LLGSLGGMFS 178 (305)
Q Consensus 138 Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek---~L~~Lks~F~ 178 (305)
+++.-..-+..++.+|+.|-.++..++.-|. -|+.|+|+++
T Consensus 5 ~LeqWv~~Rkk~eeler~lrk~kk~iKklEdeNPWLGNIkGIlg 48 (50)
T 1a92_A 5 ILEQWVSGRKKLEELERDLRKLKKKIKKLEEDNPWLGNIKGIIG 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhhhhhhc
Confidence 4555555566667777777777766666665 3455555544
No 85
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=20.37 E-value=2.2e+02 Score=25.86 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 111 VYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 111 ~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
....++.+......+.+++.--+.|..|...+.+-.-++.+.+..+..+..++..+...|..|-|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~a~~~l~~a~~~~~~a~~~L~~l~G~ 226 (442)
T 1yc9_A 161 QETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQ 226 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566777888888888888888888888898888999999999999999999999988877543
Done!