Query 021914
Match_columns 305
No_of_seqs 231 out of 638
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 11:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1io1a_ e.32.1.1 (A:) Phase 1 72.3 2.2 0.00016 35.8 5.3 43 244-286 20-75 (395)
2 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 20.1 1.6E+02 0.011 21.6 9.6 52 244-295 12-68 (196)
3 d1lvfa_ a.47.2.1 (A:) Syntaxin 18.3 1.5E+02 0.011 20.8 8.9 75 87-165 24-105 (106)
4 d1wp1a_ f.5.1.1 (A:) Outer mem 17.5 1.2E+02 0.0089 25.7 6.9 66 111-176 175-240 (456)
5 d1wa8b1 a.25.3.1 (B:602-695) E 15.6 1.6E+02 0.012 19.8 8.0 32 250-281 7-38 (94)
6 d1rcda_ a.25.1.1 (A:) (Apo)fer 15.2 2.2E+02 0.016 21.2 7.6 54 107-160 95-151 (171)
7 d1ek9a_ f.5.1.1 (A:) Integral 14.3 1.7E+02 0.013 23.9 6.9 64 112-175 124-187 (428)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 11.4 90 0.0066 23.3 3.5 34 271-304 86-119 (129)
9 d1gg2g_ a.137.3.1 (G:) Transdu 11.3 52 0.0038 21.2 1.7 8 23-30 47-54 (54)
10 d1r8ia_ a.8.7.1 (A:) Typo IV s 10.3 71 0.0051 24.7 2.6 35 142-176 3-37 (187)
No 1
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=72.31 E-value=2.2 Score=35.77 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhhhhhhhHH
Q 021914 244 SKQDDALSELSGILGELKNMATD-------------MGSEIDRQNKSLDYLDDDVD 286 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~-------------mg~ELd~QN~~LD~I~~kvD 286 (305)
+--|..|.+++.+|.|+|.||+. |..||++..+.|++|-...+
T Consensus 20 qtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~ 75 (395)
T d1io1a_ 20 QTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQ 75 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 34589999999999999999974 67888888888888875543
No 2
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.08 E-value=1.6e+02 Score=21.63 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 021914 244 SKQDDALSELSGILGELKNMATDMG-----SEIDRQNKSLDYLDDDVDVLNIRVKDA 295 (305)
Q Consensus 244 ~eqD~nLdeLs~~l~rLK~mA~~mg-----~ELd~QN~~LD~I~~kvD~~~~ri~~~ 295 (305)
.++...|..|...+..|..+-..++ .+...-...|+.|...+..+..+++..
T Consensus 12 ~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~ 68 (196)
T d1fioa_ 12 SQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNE 68 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776655443 233333444444444444444444443
No 3
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.28 E-value=1.5e+02 Score=20.81 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=47.8
Q ss_pred hhhhhccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHhHHhh
Q 021914 87 KYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATK-------TLVSLHQQGEQITRTHYTAASI 159 (305)
Q Consensus 87 ~y~~~~~~~~~~e~q~v~eleq~~~~~~qeT~~ST~rsLrlaeEaee~G~~-------Tl~~L~~QgEQL~rtE~~LD~I 159 (305)
+|..-.+++.+....++..+..++ ..++.+..--|.-+++|-.+.-+ +..+|.+-..=+..+...+..|
T Consensus 24 ~w~~~~~~~~~~~~~e~~~~~~eL----~~~l~siewdL~dLe~av~~ve~np~kf~l~~~ei~~Rr~fi~~~~~~I~~~ 99 (106)
T d1lvfa_ 24 RWTELLQGPSAATREEIDWTTNEL----RNNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDM 99 (106)
T ss_dssp HHHHHTTCTTSCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCcHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455455555566666666666555 45555555555666666555433 5667777777788888888888
Q ss_pred hhhHHH
Q 021914 160 DHDLSR 165 (305)
Q Consensus 160 ~~dLk~ 165 (305)
...|..
T Consensus 100 ~~~l~~ 105 (106)
T d1lvfa_ 100 KDQMSA 105 (106)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777653
No 4
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.53 E-value=1.2e+02 Score=25.65 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 111 VYKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 111 ~~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
....++.++...+.+.+++.--+.|..+...+.+-.-++...+..+..+..++..+...|..|-|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~ 240 (456)
T d1wp1a_ 175 LQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGS 240 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566666777777777777777777777777777888888888888899888888877766543
No 5
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.63 E-value=1.6e+02 Score=19.77 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021914 250 LSELSGILGELKNMATDMGSEIDRQNKSLDYL 281 (305)
Q Consensus 250 LdeLs~~l~rLK~mA~~mg~ELd~QN~~LD~I 281 (305)
+..|....+.|+..+..|..+|+.-...|+.|
T Consensus 7 ~~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l 38 (94)
T d1wa8b1 7 FAGIEAAASAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555544
No 6
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=15.19 E-value=2.2e+02 Score=21.23 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHhhHHHHHHHHhHHhhh
Q 021914 107 EDYAVYKAEDTTKQVHGCLKIAEEIREDATKT-LV--SLHQQGEQITRTHYTAASID 160 (305)
Q Consensus 107 eq~~~~~~qeT~~ST~rsLrlaeEaee~G~~T-l~--~L~~QgEQL~rtE~~LD~I~ 160 (305)
=+.+...-+..+.+.++...+|++..+.++.. ++ -|.+|.|.+......|+.+.
T Consensus 95 ~~~al~~Ek~v~~~l~~l~~~a~~~~D~~~~~fle~~fl~eQ~e~~~~l~~~l~~l~ 151 (171)
T d1rcda_ 95 LQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLK 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444666888888889998888777666 43 57788887777776666554
No 7
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=14.34 E-value=1.7e+02 Score=23.87 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhcc
Q 021914 112 YKAEDTTKQVHGCLKIAEEIREDATKTLVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGG 175 (305)
Q Consensus 112 ~~~qeT~~ST~rsLrlaeEaee~G~~Tl~~L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks 175 (305)
...++.+....+.+.+++.--+.|..+...+..-.-++.+.+..+..+..++..+...|..|-+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~~~~~l~~a~~~~~~~~~~L~~l~g 187 (428)
T d1ek9a_ 124 SYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQITG 187 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 3445566666777777777777777777777777778888888888888888888887776643
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.44 E-value=90 Score=23.25 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=24.2
Q ss_pred HHHHHhhhhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 021914 271 IDRQNKSLDYLDDDVDVLNIRVKDANLRGRRLLG 304 (305)
Q Consensus 271 Ld~QN~~LD~I~~kvD~~~~ri~~~nkr~~kLl~ 304 (305)
-+.|.+.|.+|......+..++..+-++...||+
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~ 119 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMR 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777666664
No 9
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.28 E-value=52 Score=21.15 Aligned_cols=8 Identities=50% Similarity=0.970 Sum_probs=5.3
Q ss_pred CCCCCCCC
Q 021914 23 VSSRSNPF 30 (305)
Q Consensus 23 ~~~~~npf 30 (305)
.|.+.|||
T Consensus 47 ~~~~~NPf 54 (54)
T d1gg2g_ 47 VPASENPF 54 (54)
T ss_dssp CCTTTSCC
T ss_pred CCCCCCCC
Confidence 45666887
No 10
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=10.33 E-value=71 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHHHhHHhhhhhHHHHHHHhhhhccc
Q 021914 142 LHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGM 176 (305)
Q Consensus 142 L~~QgEQL~rtE~~LD~I~~dLk~aek~L~~Lks~ 176 (305)
|..|.|||...-..++.+...+...++.+.++.|.
T Consensus 3 ~~~~~eql~q~~~ql~~~k~Ql~q~k~~~~s~tG~ 37 (187)
T d1r8ia_ 3 LIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAKT 37 (187)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45688999999999999999999999988888643
Done!