Query 021917
Match_columns 305
No_of_seqs 283 out of 1486
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2738 Putative methionine am 100.0 1.4E-86 3.1E-91 602.9 23.2 272 10-303 4-277 (369)
2 PLN03158 methionine aminopepti 100.0 1.7E-78 3.7E-83 586.5 30.4 296 6-303 3-298 (396)
3 COG0024 Map Methionine aminope 100.0 4.1E-38 9E-43 287.0 20.1 164 140-303 3-168 (255)
4 PRK12897 methionine aminopepti 100.0 2.7E-34 5.9E-39 262.8 20.4 163 140-302 2-164 (248)
5 PRK07281 methionine aminopepti 100.0 6E-34 1.3E-38 265.9 20.8 164 139-302 1-195 (286)
6 PRK12318 methionine aminopepti 100.0 1.8E-33 3.8E-38 263.5 21.0 162 140-301 41-204 (291)
7 TIGR00500 met_pdase_I methioni 100.0 3.7E-33 7.9E-38 254.6 21.5 162 141-302 2-163 (247)
8 PRK12896 methionine aminopepti 100.0 6E-33 1.3E-37 253.9 20.8 164 139-302 7-170 (255)
9 PRK05716 methionine aminopepti 100.0 5.7E-32 1.2E-36 247.1 21.0 163 139-301 2-164 (252)
10 COG0006 PepP Xaa-Pro aminopept 100.0 4E-31 8.7E-36 256.0 19.0 160 135-299 147-306 (384)
11 PRK09795 aminopeptidase; Provi 100.0 1.3E-30 2.7E-35 250.7 19.9 160 136-300 121-285 (361)
12 cd01090 Creatinase Creatine am 100.0 4.4E-30 9.6E-35 232.6 19.6 154 148-301 1-155 (228)
13 TIGR02993 ectoine_eutD ectoine 100.0 1.8E-30 3.9E-35 252.3 17.4 163 135-299 151-314 (391)
14 cd01086 MetAP1 Methionine Amin 100.0 1.8E-29 3.8E-34 228.8 20.1 154 148-301 1-154 (238)
15 TIGR00495 crvDNA_42K 42K curve 100.0 1.4E-29 3.1E-34 245.4 20.4 163 141-304 12-187 (389)
16 PRK10879 proline aminopeptidas 100.0 2.1E-29 4.5E-34 248.2 20.0 153 136-293 167-320 (438)
17 PRK15173 peptidase; Provisiona 100.0 6.5E-29 1.4E-33 235.8 20.6 160 135-300 88-247 (323)
18 PRK14575 putative peptidase; P 100.0 5E-29 1.1E-33 243.4 19.6 160 135-300 171-330 (406)
19 PRK14576 putative endopeptidas 100.0 8.9E-29 1.9E-33 241.5 19.7 161 135-301 170-330 (405)
20 cd01087 Prolidase Prolidase. E 100.0 1.2E-28 2.5E-33 224.4 18.5 143 148-296 1-144 (243)
21 cd01092 APP-like Similar to Pr 100.0 3E-28 6.5E-33 215.3 19.2 147 148-299 1-147 (208)
22 cd01089 PA2G4-like Related to 100.0 1.2E-27 2.6E-32 216.4 19.1 154 148-303 1-168 (228)
23 PRK13607 proline dipeptidase; 100.0 1.7E-27 3.7E-32 234.7 18.8 155 137-298 156-315 (443)
24 TIGR00501 met_pdase_II methion 99.9 7.8E-27 1.7E-31 219.0 19.6 148 145-303 2-152 (295)
25 PTZ00053 methionine aminopepti 99.9 1.4E-26 3E-31 227.3 21.9 150 140-298 150-306 (470)
26 PF00557 Peptidase_M24: Metall 99.9 5.9E-27 1.3E-31 207.5 17.3 143 149-297 1-144 (207)
27 PRK08671 methionine aminopepti 99.9 3.6E-26 7.8E-31 214.2 18.9 146 147-303 1-149 (291)
28 cd01066 APP_MetAP A family inc 99.9 6.6E-26 1.4E-30 197.9 18.0 145 148-298 1-145 (207)
29 cd01088 MetAP2 Methionine Amin 99.9 1.1E-25 2.3E-30 210.9 18.6 145 148-303 1-148 (291)
30 cd01085 APP X-Prolyl Aminopept 99.9 5.9E-25 1.3E-29 198.7 17.7 145 149-298 5-155 (224)
31 cd01091 CDC68-like Related to 99.9 7.6E-23 1.6E-27 187.1 17.1 151 148-299 1-163 (243)
32 KOG2737 Putative metallopeptid 99.9 3.3E-22 7.2E-27 187.9 14.0 152 137-292 180-336 (492)
33 KOG2414 Putative Xaa-Pro amino 99.8 1.1E-20 2.3E-25 179.2 13.8 156 137-297 223-385 (488)
34 KOG2776 Metallopeptidase [Gene 99.7 2.2E-15 4.7E-20 141.3 16.0 162 141-304 14-189 (398)
35 KOG1189 Global transcriptional 99.4 1.8E-12 3.9E-17 130.9 13.2 161 135-300 130-302 (960)
36 PLN03144 Carbon catabolite rep 99.4 1.3E-13 2.9E-18 139.8 3.1 48 14-61 64-112 (606)
37 KOG2775 Metallopeptidase [Gene 99.3 5E-11 1.1E-15 110.0 12.7 147 143-298 80-233 (397)
38 KOG2413 Xaa-Pro aminopeptidase 99.1 1.5E-09 3.4E-14 108.1 12.9 159 136-298 301-470 (606)
39 COG5406 Nucleosome binding fac 98.8 5.1E-08 1.1E-12 97.6 12.4 163 136-300 164-343 (1001)
40 PF01753 zf-MYND: MYND finger; 97.9 5.2E-06 1.1E-10 54.0 1.2 35 15-56 1-35 (37)
41 cd01066 APP_MetAP A family inc 97.6 0.001 2.2E-08 57.5 12.1 102 149-252 102-204 (207)
42 KOG1710 MYND Zn-finger and ank 97.6 2.7E-05 5.9E-10 72.3 1.2 40 13-59 320-360 (396)
43 cd01092 APP-like Similar to Pr 97.3 0.0032 6.9E-08 55.3 11.6 100 149-251 103-204 (208)
44 PRK05716 methionine aminopepti 97.1 0.0058 1.3E-07 55.6 11.4 100 150-252 119-240 (252)
45 TIGR00500 met_pdase_I methioni 97.0 0.011 2.4E-07 53.7 11.9 100 150-252 117-238 (247)
46 cd01086 MetAP1 Methionine Amin 97.0 0.014 3E-07 52.7 12.1 100 150-252 109-230 (238)
47 TIGR02993 ectoine_eutD ectoine 96.8 0.012 2.5E-07 57.7 11.2 99 150-252 271-374 (391)
48 cd01090 Creatinase Creatine am 96.8 0.019 4E-07 52.0 11.8 100 150-252 110-220 (228)
49 PRK15173 peptidase; Provisiona 96.8 0.016 3.5E-07 55.3 11.8 102 149-252 202-306 (323)
50 PRK09795 aminopeptidase; Provi 96.7 0.024 5.3E-07 54.6 12.6 104 145-251 236-341 (361)
51 PRK12897 methionine aminopepti 96.7 0.015 3.3E-07 53.1 10.6 100 150-252 118-239 (248)
52 PRK08671 methionine aminopepti 96.7 0.031 6.7E-07 52.5 12.8 95 150-251 102-205 (291)
53 cd01091 CDC68-like Related to 96.7 0.019 4.1E-07 52.6 10.9 100 149-252 119-234 (243)
54 PRK14575 putative peptidase; P 96.7 0.02 4.4E-07 56.3 11.8 99 150-252 286-389 (406)
55 cd01087 Prolidase Prolidase. E 96.7 0.021 4.5E-07 51.8 11.0 102 150-252 104-235 (243)
56 cd01088 MetAP2 Methionine Amin 96.6 0.036 7.7E-07 52.1 12.7 95 150-251 101-204 (291)
57 PRK12896 methionine aminopepti 96.6 0.034 7.4E-07 50.6 11.7 100 150-252 124-246 (255)
58 PRK12318 methionine aminopepti 96.5 0.034 7.4E-07 52.4 11.3 86 150-238 159-247 (291)
59 PRK14576 putative endopeptidas 96.4 0.04 8.7E-07 54.2 12.1 101 149-252 284-388 (405)
60 cd01089 PA2G4-like Related to 96.4 0.035 7.6E-07 50.1 10.5 99 149-252 120-220 (228)
61 PF00557 Peptidase_M24: Metall 96.3 0.027 5.9E-07 49.5 9.2 98 151-251 104-206 (207)
62 PRK07281 methionine aminopepti 96.3 0.045 9.7E-07 51.5 10.8 99 150-251 149-270 (286)
63 TIGR00495 crvDNA_42K 42K curve 96.2 0.046 9.9E-07 53.7 10.8 101 150-250 139-248 (389)
64 TIGR00501 met_pdase_II methion 96.0 0.063 1.4E-06 50.6 10.7 93 151-250 106-207 (295)
65 PLN03158 methionine aminopepti 96.0 0.081 1.7E-06 52.1 11.5 84 151-237 252-339 (396)
66 COG0006 PepP Xaa-Pro aminopept 95.6 0.16 3.4E-06 49.4 11.6 97 150-252 263-367 (384)
67 PRK10879 proline aminopeptidas 95.2 0.23 5E-06 49.4 11.7 101 151-252 284-411 (438)
68 PTZ00053 methionine aminopepti 95.1 0.18 3.8E-06 50.7 10.5 99 150-251 264-376 (470)
69 COG0024 Map Methionine aminope 94.7 0.38 8.2E-06 44.6 10.7 96 149-245 120-218 (255)
70 PF04438 zf-HIT: HIT zinc fing 93.4 0.034 7.4E-07 34.4 0.9 28 13-48 3-30 (30)
71 PRK13607 proline dipeptidase; 92.3 1.3 2.9E-05 44.2 10.8 88 152-239 271-391 (443)
72 cd01085 APP X-Prolyl Aminopept 92.0 3.6 7.7E-05 37.1 12.4 96 152-251 114-215 (224)
73 PF09889 DUF2116: Uncharacteri 90.4 0.17 3.7E-06 36.4 1.6 35 24-60 4-38 (59)
74 KOG2738 Putative methionine am 90.3 0.69 1.5E-05 43.7 6.0 42 256-297 124-165 (369)
75 PRK00418 DNA gyrase inhibitor; 86.5 0.36 7.9E-06 35.0 1.3 33 22-54 5-40 (62)
76 COG3024 Uncharacterized protei 85.4 0.52 1.1E-05 34.3 1.6 35 9-53 4-40 (65)
77 PRK01343 zinc-binding protein; 84.1 0.54 1.2E-05 33.5 1.2 28 24-52 10-37 (57)
78 PF03884 DUF329: Domain of unk 80.1 0.52 1.1E-05 33.7 -0.1 26 25-50 4-32 (57)
79 KOG1189 Global transcriptional 76.7 11 0.00024 40.0 8.1 98 151-252 259-368 (960)
80 cd02249 ZZ Zinc finger, ZZ typ 72.9 0.97 2.1E-05 30.5 -0.4 37 14-58 2-41 (46)
81 KOG3612 PHD Zn-finger protein 71.2 1.4 3.1E-05 44.6 0.2 38 15-61 530-567 (588)
82 KOG2857 Predicted MYND Zn-fing 71.1 1.6 3.6E-05 36.7 0.5 29 13-49 6-35 (157)
83 COG3350 Uncharacterized conser 68.8 2 4.3E-05 30.1 0.5 9 39-47 28-36 (53)
84 cd01666 TGS_DRG_C TGS_DRG_C: 68.5 18 0.00039 27.1 5.7 52 169-231 21-73 (75)
85 PF13824 zf-Mss51: Zinc-finger 66.3 5.7 0.00012 28.1 2.4 37 15-58 2-42 (55)
86 PRK04023 DNA polymerase II lar 65.7 3.7 7.9E-05 44.7 1.9 38 4-44 618-656 (1121)
87 PF06467 zf-FCS: MYM-type Zinc 64.1 4.3 9.4E-05 26.4 1.4 35 13-49 7-42 (43)
88 PF02069 Metallothio_Pro: Prok 63.1 3.1 6.7E-05 29.1 0.6 20 31-50 20-39 (52)
89 PF10571 UPF0547: Uncharacteri 57.7 5.4 0.00012 23.8 0.9 17 14-30 2-21 (26)
90 PRK01490 tig trigger factor; P 57.3 38 0.00082 33.4 7.4 56 173-252 132-191 (435)
91 TIGR00115 tig trigger factor. 55.6 60 0.0013 31.7 8.4 74 172-278 119-197 (408)
92 cd02341 ZZ_ZZZ3 Zinc finger, Z 54.8 4.1 8.8E-05 28.0 0.0 39 14-59 2-44 (48)
93 PF13248 zf-ribbon_3: zinc-rib 54.4 7.5 0.00016 22.9 1.1 19 12-30 2-23 (26)
94 PF00254 FKBP_C: FKBP-type pep 54.1 18 0.00039 27.3 3.6 50 221-279 3-59 (94)
95 cd02335 ZZ_ADA2 Zinc finger, Z 52.1 3.8 8.2E-05 28.0 -0.5 37 14-58 2-44 (49)
96 COG4306 Uncharacterized protei 51.8 2.3 5E-05 35.2 -1.8 20 12-31 28-47 (160)
97 cd02340 ZZ_NBR1_like Zinc fing 51.5 5 0.00011 26.7 0.1 34 14-58 2-38 (43)
98 PF09297 zf-NADH-PPase: NADH p 50.4 5.9 0.00013 24.5 0.2 20 12-31 3-29 (32)
99 KOG2858 Uncharacterized conser 50.2 7.2 0.00016 37.7 0.9 34 8-49 13-47 (390)
100 PF05184 SapB_1: Saposin-like 48.5 35 0.00077 21.4 3.8 34 154-187 3-36 (39)
101 cd02345 ZZ_dah Zinc finger, ZZ 48.5 5.2 0.00011 27.4 -0.3 37 14-58 2-44 (49)
102 COG5406 Nucleosome binding fac 45.9 75 0.0016 33.5 7.3 69 162-234 311-384 (1001)
103 PF12773 DZR: Double zinc ribb 45.5 13 0.00029 24.9 1.4 31 11-43 11-47 (50)
104 cd02338 ZZ_PCMF_like Zinc fing 44.4 6.4 0.00014 26.9 -0.3 29 14-50 2-34 (49)
105 PF03833 PolC_DP2: DNA polymer 43.1 8 0.00017 41.5 0.0 37 4-43 647-684 (900)
106 COG4068 Uncharacterized protei 42.5 9.5 0.00021 27.4 0.3 23 24-48 9-31 (64)
107 cd02334 ZZ_dystrophin Zinc fin 42.2 7.3 0.00016 26.8 -0.3 37 14-58 2-44 (49)
108 PRK14890 putative Zn-ribbon RN 42.1 15 0.00033 26.4 1.3 21 14-34 27-47 (59)
109 PRK14891 50S ribosomal protein 41.7 8.9 0.00019 31.8 0.1 37 11-50 3-41 (131)
110 cd02344 ZZ_HERC2 Zinc finger, 41.6 7.8 0.00017 26.3 -0.2 35 14-58 2-40 (45)
111 PRK00398 rpoP DNA-directed RNA 39.9 12 0.00027 24.9 0.5 21 11-31 2-29 (46)
112 COG0544 Tig FKBP-type peptidyl 39.1 59 0.0013 32.6 5.4 45 172-240 131-175 (441)
113 PF13240 zinc_ribbon_2: zinc-r 38.8 16 0.00035 21.0 0.8 15 15-29 2-19 (23)
114 PRK14714 DNA polymerase II lar 38.5 15 0.00032 41.2 1.1 25 141-165 837-861 (1337)
115 PF09538 FYDLN_acid: Protein o 38.1 16 0.00035 29.4 1.0 22 11-32 8-35 (108)
116 PRK14559 putative protein seri 37.9 18 0.00039 38.0 1.6 31 12-44 15-46 (645)
117 COG2888 Predicted Zn-ribbon RN 36.3 19 0.00042 25.9 1.1 19 15-33 30-48 (61)
118 COG2075 RPL24A Ribosomal prote 36.1 14 0.0003 27.1 0.3 33 11-48 2-38 (66)
119 KOG2775 Metallopeptidase [Gene 36.0 96 0.0021 29.7 5.9 40 254-293 85-124 (397)
120 cd04938 TGS_Obg-like TGS_Obg-l 35.2 69 0.0015 23.9 4.0 47 169-231 28-74 (76)
121 PF07754 DUF1610: Domain of un 34.9 18 0.00039 21.3 0.6 7 24-30 17-23 (24)
122 cd02339 ZZ_Mind_bomb Zinc fing 33.6 12 0.00025 25.3 -0.4 35 14-58 2-40 (45)
123 PF10013 DUF2256: Uncharacteri 33.2 17 0.00036 24.3 0.3 34 9-48 5-40 (42)
124 PRK12495 hypothetical protein; 32.6 19 0.00041 32.6 0.7 27 8-34 38-69 (226)
125 PF03604 DNA_RNApol_7kD: DNA d 32.4 23 0.0005 22.2 0.9 17 14-30 2-24 (32)
126 PF14446 Prok-RING_1: Prokaryo 32.2 21 0.00046 25.2 0.8 21 11-31 4-29 (54)
127 PF12855 Ecl1: Life-span regul 31.4 25 0.00054 23.6 0.9 18 36-53 20-37 (43)
128 PRK06488 sulfur carrier protei 31.0 46 0.001 23.6 2.4 32 204-236 30-62 (65)
129 KOG2611 Neurochondrin/leucine- 30.2 34 0.00074 34.8 2.1 67 226-292 584-660 (698)
130 PRK12380 hydrogenase nickel in 30.1 24 0.00051 28.5 0.8 22 13-34 71-97 (113)
131 PF03477 ATP-cone: ATP cone do 29.9 32 0.0007 25.8 1.5 34 158-191 41-74 (90)
132 PRK00420 hypothetical protein; 29.6 20 0.00044 29.1 0.3 25 9-33 20-50 (112)
133 PF04945 YHS: YHS domain; Int 29.0 22 0.00047 23.8 0.3 11 39-49 25-35 (47)
134 PF02824 TGS: TGS domain; Int 28.8 60 0.0013 22.9 2.7 46 169-231 13-58 (60)
135 cd01669 TGS_Ygr210_C TGS_Ygr21 28.5 1.5E+02 0.0032 22.1 4.9 48 169-231 27-74 (76)
136 TIGR00100 hypA hydrogenase nic 28.4 27 0.00058 28.3 0.8 22 13-34 71-97 (115)
137 PF02829 3H: 3H domain; Inter 28.4 1.1E+02 0.0024 24.2 4.3 67 229-297 23-96 (98)
138 smart00659 RPOLCX RNA polymera 28.3 24 0.00052 23.7 0.5 17 14-30 4-26 (44)
139 PF12631 GTPase_Cys_C: Catalyt 28.1 1.3E+02 0.0029 21.9 4.5 40 253-292 10-49 (73)
140 PF10415 FumaraseC_C: Fumarase 27.9 73 0.0016 22.3 2.9 35 150-184 10-49 (55)
141 TIGR00354 polC DNA polymerase, 27.5 27 0.00058 38.2 0.9 33 7-42 620-653 (1095)
142 TIGR03516 ppisom_GldI peptidyl 27.3 1.6E+02 0.0034 25.7 5.5 54 219-281 82-141 (177)
143 PF01155 HypA: Hydrogenase exp 27.2 15 0.00032 29.6 -0.9 22 12-33 70-96 (113)
144 cd02343 ZZ_EF Zinc finger, ZZ 26.7 17 0.00036 25.1 -0.6 29 14-50 2-33 (48)
145 PF05142 DUF702: Domain of unk 26.6 24 0.00052 30.2 0.3 20 12-31 4-28 (154)
146 COG4416 Com Mu-like prophage p 26.4 16 0.00035 25.7 -0.6 23 12-34 4-35 (60)
147 PF04181 RPAP2_Rtr1: Rtr1/RPAP 25.9 26 0.00057 26.2 0.4 12 39-50 59-70 (79)
148 TIGR02300 FYDLN_acid conserved 25.8 35 0.00075 28.4 1.1 22 11-32 8-35 (129)
149 KOG2737 Putative metallopeptid 25.7 1.7E+02 0.0037 29.0 5.9 29 160-188 310-338 (492)
150 PRK07440 hypothetical protein; 25.3 1.2E+02 0.0027 22.0 3.9 34 203-237 34-68 (70)
151 PRK05659 sulfur carrier protei 25.2 1.4E+02 0.003 21.0 4.1 30 205-235 32-62 (66)
152 COG1996 RPC10 DNA-directed RNA 24.4 25 0.00055 24.3 0.0 22 9-30 3-31 (49)
153 smart00834 CxxC_CXXC_SSSS Puta 24.1 39 0.00085 21.4 0.9 19 13-31 6-34 (41)
154 PRK09283 delta-aminolevulinic 24.0 3.3E+02 0.0071 26.3 7.4 71 226-300 112-187 (323)
155 TIGR02098 MJ0042_CXXC MJ0042 f 24.0 33 0.00073 21.6 0.5 8 24-31 26-33 (38)
156 PF14205 Cys_rich_KTR: Cystein 22.9 32 0.0007 24.3 0.3 21 14-34 6-39 (55)
157 PF09862 DUF2089: Protein of u 22.8 35 0.00076 27.7 0.6 17 15-31 1-20 (113)
158 PRK06646 DNA polymerase III su 22.8 4.8E+02 0.01 22.2 7.6 39 149-188 13-51 (154)
159 PF11023 DUF2614: Protein of u 22.7 31 0.00067 28.0 0.2 21 12-32 69-94 (114)
160 PF09506 Salt_tol_Pase: Glucos 22.6 3.2E+02 0.0069 26.7 6.9 131 143-273 97-282 (381)
161 PF04363 DUF496: Protein of un 22.6 2.7E+02 0.0058 21.8 5.3 35 150-185 27-61 (95)
162 COG1054 Predicted sulfurtransf 22.2 63 0.0014 30.8 2.2 45 9-58 240-288 (308)
163 PRK05423 hypothetical protein; 22.2 1.3E+02 0.0028 23.8 3.5 27 160-186 43-69 (104)
164 cd01121 Sms Sms (bacterial rad 22.1 37 0.0008 33.2 0.7 21 14-34 2-25 (372)
165 COG0309 HypE Hydrogenase matur 22.0 6.7E+02 0.015 24.3 9.1 77 221-300 159-246 (339)
166 COG4338 Uncharacterized protei 22.0 21 0.00045 24.7 -0.8 40 2-47 2-43 (54)
167 PF12926 MOZART2: Mitotic-spin 21.7 2.3E+02 0.0051 22.0 4.8 51 140-190 20-74 (88)
168 PRK07696 sulfur carrier protei 21.5 1.7E+02 0.0036 21.1 3.9 32 203-235 31-63 (67)
169 PRK03681 hypA hydrogenase nick 21.5 42 0.00092 27.1 0.8 23 12-34 70-98 (114)
170 TIGR02399 salt_tol_Pase glucos 21.3 3.4E+02 0.0073 26.6 6.8 131 143-273 103-287 (389)
171 smart00739 KOW KOW (Kyprides, 21.2 1.6E+02 0.0035 16.5 3.2 22 223-245 2-23 (28)
172 PRK00762 hypA hydrogenase nick 20.3 44 0.00096 27.4 0.7 22 12-34 70-103 (124)
173 COG3642 Mn2+-dependent serine/ 20.3 1.4E+02 0.003 26.8 3.8 25 211-235 111-137 (204)
174 PRK13130 H/ACA RNA-protein com 20.2 68 0.0015 22.8 1.5 22 13-34 6-28 (56)
175 PRK00464 nrdR transcriptional 20.1 2.6E+02 0.0056 23.9 5.3 39 154-192 84-122 (154)
No 1
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-86 Score=602.92 Aligned_cols=272 Identities=58% Similarity=0.975 Sum_probs=258.0
Q ss_pred cccccccc--cCCccccccchhhhcCCCCCCCcccChhhhhhchhHHHHHhhhhhcCCCCCCCCCCcccccchhhcccCC
Q 021917 10 TTSLSCVR--CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQ 87 (305)
Q Consensus 10 ~~~~~c~~--c~~~~~l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (305)
.....|.+ |+++|+||||+|+|++|+ .+|||+|+|||.+|.+||++|.++. . ....
T Consensus 4 ~~~~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~---------------~-----~~~~ 61 (369)
T KOG2738|consen 4 IAKISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKAL---------------R-----IRKE 61 (369)
T ss_pred chhceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccch---------------h-----hhhh
Confidence 45678966 999999999999999997 5899999999999999999996430 0 2345
Q ss_pred CCCCCCCCCCcCCCCccccCCCCcccCCcCCCccccccCCCCCCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 021917 88 ARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAAR 167 (305)
Q Consensus 88 ~~~~~~~~~~~~g~~~p~~~s~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~ 167 (305)
+.|+|||.|.|+|+||||++||+|.||++|++|+|+++|.+.+|+.+.......|++++||+.||+||+|++++|+.+..
T Consensus 62 g~~~p~p~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~ 141 (369)
T KOG2738|consen 62 GQYNPWPKFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAAT 141 (369)
T ss_pred ccCCCCccccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999887766678899999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCEEEEEeeceeCcEEeceeeE
Q 021917 168 MIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNET 247 (305)
Q Consensus 168 ~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT 247 (305)
+++||+||+|||++||++++++|+|||||||++||||+|+|+|+++|||+||.|+|++|||||||+++|++|||+|+++|
T Consensus 142 ~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneT 221 (369)
T KOG2738|consen 142 LVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNET 221 (369)
T ss_pred hcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceeeec
Q 021917 248 YFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEIKQ 303 (305)
Q Consensus 248 ~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~~~ 303 (305)
|+||+++++.++|+++++|||+.||+++|||++|++|+++|++++.++||+|||.+
T Consensus 222 ffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sVVr~y 277 (369)
T KOG2738|consen 222 FFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSY 277 (369)
T ss_pred eEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCceeehhh
Confidence 99999999999999999999999999999999999999999999999999999975
No 2
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.7e-78 Score=586.51 Aligned_cols=296 Identities=81% Similarity=1.367 Sum_probs=275.1
Q ss_pred CccccccccccccCCccccccchhhhcCCCCCCCcccChhhhhhchhHHHHHhhhhhcCCCCCCCCCCcccccchhhccc
Q 021917 6 DAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKK 85 (305)
Q Consensus 6 ~~~~~~~~~c~~c~~~~~l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (305)
+++++..+.|++|+|+|+||||+|+|+|+|+..||||||+|||.+|++||.+|+..+.... .+......+.|.||+..
T Consensus 3 ~~~~~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (396)
T PLN03158 3 EALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSSI--GQNSDAPAEGWLYCLKK 80 (396)
T ss_pred cccCCCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhhhccc--ccccccccccccccccc
Confidence 5667778889999999999999999999987789999999999999999999976422111 12234445689999998
Q ss_pred CCCCCCCCCCCCcCCCCccccCCCCcccCCcCCCccccccCCCCCCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 021917 86 GQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAA 165 (305)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~p~~~s~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~ 165 (305)
+...+++||+|.|+|+||||++||++.||++|++|+|+.+|.|.++.....++.|.|||++||+.||+|+++++++|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a 160 (396)
T PLN03158 81 GQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAA 160 (396)
T ss_pred cccccCCCCCCCCCcccccCCCCCCCCCCccCCCCccccCCCCccccccccccceeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999998877666677899999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCEEEEEeeceeCcEEecee
Q 021917 166 ARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLN 245 (305)
Q Consensus 166 ~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~ 245 (305)
.++++||+||.||++.++.+++++|+||+++||++||+++|+|+|+++|||+|++++|++||+|+||++++++|||+|++
T Consensus 161 ~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~r~L~~GDiV~iDvg~~~~GY~aD~t 240 (396)
T PLN03158 161 ARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLN 240 (396)
T ss_pred HHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccCCCCCCccCCCCCEEEEEEeEEECCEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceeeec
Q 021917 246 ETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEIKQ 303 (305)
Q Consensus 246 RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~~~ 303 (305)
|||+||++++++++++++++++++++|+++|||++++||+++++++++++||++++.+
T Consensus 241 RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v~~~ 298 (396)
T PLN03158 241 ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSY 298 (396)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCccCCc
Confidence 9999999999999999999999999999999999999999999999999999998754
No 3
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-38 Score=287.03 Aligned_cols=164 Identities=43% Similarity=0.707 Sum_probs=157.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCC
Q 021917 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (305)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~ 219 (305)
+.+|+++||+.||+|++|+.++++.+.+.++||+|+.||++++++++.++|++|++++|.+||..+|+|+|+++|||+|+
T Consensus 3 i~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~ 82 (255)
T COG0024 3 ISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPG 82 (255)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCC-HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCC
Q 021917 220 -SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD-EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (305)
Q Consensus 220 -~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~-~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~ 297 (305)
+++|++||+|+||+++.++||++|.++||.||+.+ +..++|.+++++|++++|+.+|||++.+||+++|+++++++||
T Consensus 83 d~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~ 162 (255)
T COG0024 83 DKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGF 162 (255)
T ss_pred CCcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999999999766 4777899999999999999999999999999999999999999
Q ss_pred ceeeec
Q 021917 298 SVEIKQ 303 (305)
Q Consensus 298 ~vv~~~ 303 (305)
++||.+
T Consensus 163 ~vVr~~ 168 (255)
T COG0024 163 SVVRNL 168 (255)
T ss_pred EEeecc
Confidence 999865
No 4
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=2.7e-34 Score=262.84 Aligned_cols=163 Identities=31% Similarity=0.504 Sum_probs=156.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCC
Q 021917 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (305)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~ 219 (305)
+.|||++||+.||+|+++++++++.+.+.++||+||.||++.++.++.++|+.....+|.+||.++++|.|+.++|+.|+
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~ 81 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPA 81 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCC
Confidence 47999999999999999999999999999999999999999999999999998766667789988999999999999999
Q ss_pred CCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCce
Q 021917 220 SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299 (305)
Q Consensus 220 ~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~v 299 (305)
+++|++||+|.||+++.++||++|++|||++|++++++++++++++++++++++++|||++++||++++++++++.||..
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~ 161 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSV 161 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eee
Q 021917 300 EIK 302 (305)
Q Consensus 300 v~~ 302 (305)
.++
T Consensus 162 ~~~ 164 (248)
T PRK12897 162 ARD 164 (248)
T ss_pred CCC
Confidence 643
No 5
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=6e-34 Score=265.91 Aligned_cols=164 Identities=23% Similarity=0.424 Sum_probs=155.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCC----CCCCceeeecCCCccc
Q 021917 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY----HFFPKSCCTSVNEVIC 214 (305)
Q Consensus 139 ~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny----~~fp~~v~ts~n~~~~ 214 (305)
++.|||++||+.||+|++|+++++.++.+.++||+||.||++.++.++.++|++|+.+++ .+||.++|+|.|..++
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVA 80 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccccc
Confidence 357999999999999999999999999999999999999999999999999999877754 5699999999999999
Q ss_pred cCCCCCCCCCCCCEEEEEeec---------------------------eeCcEEeceeeEEEecCCCHHHHHHHHHHHHH
Q 021917 215 HGIPDSRKLEDGDIVNIDVTV---------------------------YYKGVHGDLNETYFVGNADEASRQLVQCTYEC 267 (305)
Q Consensus 215 Hg~p~~r~L~~GDiV~iDv~~---------------------------~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea 267 (305)
|+.|++++|++||+|+||+++ .++||++|++|||++|++++++++++++++++
T Consensus 81 H~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea 160 (286)
T PRK07281 81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEA 160 (286)
T ss_pred CCCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 48999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceeee
Q 021917 268 LEKAISIVKPGVRFREIGEVINRHATMSGFSVEIK 302 (305)
Q Consensus 268 ~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~~ 302 (305)
++++++++|||++++||+++++++++++||+.++.
T Consensus 161 ~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~~~~ 195 (286)
T PRK07281 161 MYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRD 195 (286)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999987543
No 6
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.8e-33 Score=263.49 Aligned_cols=162 Identities=45% Similarity=0.791 Sum_probs=155.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCC--CCCceeeecCCCccccCC
Q 021917 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH--FFPKSCCTSVNEVICHGI 217 (305)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~--~fp~~v~ts~n~~~~Hg~ 217 (305)
++|||++||+.||+|++|++++++++.+.++||+||.||++.++..+.+.|+.|+.++|. .||.++++|.|+.++|+.
T Consensus 41 i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~ 120 (291)
T PRK12318 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGI 120 (291)
T ss_pred eEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEeeccceeecCC
Confidence 469999999999999999999999999999999999999999999999999998887774 599999999999999999
Q ss_pred CCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCC
Q 021917 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (305)
Q Consensus 218 p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~ 297 (305)
|++++|++||+|.||+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||+++++++++++||
T Consensus 121 p~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~ 200 (291)
T PRK12318 121 PNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGF 200 (291)
T ss_pred CCCCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 021917 298 SVEI 301 (305)
Q Consensus 298 ~vv~ 301 (305)
++++
T Consensus 201 ~~~~ 204 (291)
T PRK12318 201 SVVD 204 (291)
T ss_pred ccCC
Confidence 8764
No 7
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=3.7e-33 Score=254.57 Aligned_cols=162 Identities=48% Similarity=0.791 Sum_probs=156.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCC
Q 021917 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS 220 (305)
Q Consensus 141 ~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~ 220 (305)
.|||++||+.||+|+++++++++.+.+.++||+||.||++.++.++.++|+.+...+|.+||.++++|.|..++|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 68999999999999999999999999999999999999999999999999998777788899999999999999999999
Q ss_pred CCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCcee
Q 021917 221 RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVE 300 (305)
Q Consensus 221 r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv 300 (305)
++|++||+|.+|+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||+++++++++++||...
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~ 161 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV 161 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ee
Q 021917 301 IK 302 (305)
Q Consensus 301 ~~ 302 (305)
+.
T Consensus 162 ~~ 163 (247)
T TIGR00500 162 RE 163 (247)
T ss_pred cC
Confidence 43
No 8
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=6e-33 Score=253.91 Aligned_cols=164 Identities=40% Similarity=0.671 Sum_probs=157.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCC
Q 021917 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (305)
Q Consensus 139 ~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p 218 (305)
++.|||++||+.||+|+++++++++.+.+.++||+||.||+..+...+.++|+.+++.++.+||.++++|.|..++|+.|
T Consensus 7 ~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~p 86 (255)
T PRK12896 7 GMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGIP 86 (255)
T ss_pred ceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecCC
Confidence 56899999999999999999999999999999999999999999999999999988777888999999999999999999
Q ss_pred CCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCc
Q 021917 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (305)
Q Consensus 219 ~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~ 298 (305)
++++|++||+|.+|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++.||.
T Consensus 87 ~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~ 166 (255)
T PRK12896 87 GPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYS 166 (255)
T ss_pred CCccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeee
Q 021917 299 VEIK 302 (305)
Q Consensus 299 vv~~ 302 (305)
..++
T Consensus 167 ~~~~ 170 (255)
T PRK12896 167 VVRD 170 (255)
T ss_pred eccC
Confidence 6543
No 9
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=5.7e-32 Score=247.06 Aligned_cols=163 Identities=50% Similarity=0.813 Sum_probs=155.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCC
Q 021917 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (305)
Q Consensus 139 ~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p 218 (305)
+..|||++||+.||+|+++++++++.+.+.++||+||.||++.+...+.++|..+.+.++..||.++++|.|...+|+.|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~ 81 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIP 81 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCC
Confidence 35799999999999999999999999999999999999999999999999999877667778998999999999999999
Q ss_pred CCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCc
Q 021917 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (305)
Q Consensus 219 ~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~ 298 (305)
++++|++||+|.+|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++++|+.
T Consensus 82 ~~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~ 161 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFS 161 (252)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eee
Q 021917 299 VEI 301 (305)
Q Consensus 299 vv~ 301 (305)
..+
T Consensus 162 ~~~ 164 (252)
T PRK05716 162 VVR 164 (252)
T ss_pred eec
Confidence 754
No 10
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.97 E-value=4e-31 Score=256.00 Aligned_cols=160 Identities=29% Similarity=0.480 Sum_probs=152.8
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccc
Q 021917 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (305)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~ 214 (305)
..+.+|+|||+.||+.||+|+++++.++..+++.+++|+||.||.+.++.++.+.|+... .|+.++++|.|.+++
T Consensus 147 ~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-----sf~~iv~~G~n~a~p 221 (384)
T COG0006 147 LVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-----SFDTIVASGENAALP 221 (384)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-----CcCcEEeccccccCc
Confidence 445799999999999999999999999999999999999999999999999999996642 489999999999999
Q ss_pred cCCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Q 021917 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (305)
Q Consensus 215 Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~ 294 (305)
|+.|+++.+++||+|+||+++.|+||++|+||||++|+++++++++|+.+.+++.++++++|||++++||+.++++++.+
T Consensus 222 H~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~ 301 (384)
T COG0006 222 HYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEK 301 (384)
T ss_pred CCCCCcccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCce
Q 021917 295 SGFSV 299 (305)
Q Consensus 295 ~G~~v 299 (305)
.||+-
T Consensus 302 ~g~~~ 306 (384)
T COG0006 302 AGYGL 306 (384)
T ss_pred cCCcc
Confidence 87764
No 11
>PRK09795 aminopeptidase; Provisional
Probab=99.97 E-value=1.3e-30 Score=250.70 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=149.6
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccc
Q 021917 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (305)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~H 215 (305)
...+|+|||++||+.||+|++|++.+++.+.+.++||+||.||++.+...+.++|+.+. .|+.+|++|.|...+|
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-----~f~~iv~sG~~~~~ph 195 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWRGALPH 195 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-----CCCeEEEEeccccccC
Confidence 35689999999999999999999999999999999999999999999999999998753 5889999999999999
Q ss_pred CCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecC--CCHH---HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 021917 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN--ADEA---SRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (305)
Q Consensus 216 g~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~--~~~e---~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~ 290 (305)
+.|++++|++||+|+||+++.++||++|++|||++|. ++++ ++++++++.++++++++++|||++++||++++++
T Consensus 196 ~~~~~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~ 275 (361)
T PRK09795 196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARR 275 (361)
T ss_pred CCCCCceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999963 3333 7899999999999999999999999999999999
Q ss_pred HHHhcCCcee
Q 021917 291 HATMSGFSVE 300 (305)
Q Consensus 291 ~~~~~G~~vv 300 (305)
++++.||+..
T Consensus 276 ~~~~~g~~~~ 285 (361)
T PRK09795 276 VITEAGYGDY 285 (361)
T ss_pred HHHHcCCCcc
Confidence 9999999753
No 12
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=99.97 E-value=4.4e-30 Score=232.58 Aligned_cols=154 Identities=21% Similarity=0.235 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCC-CCCCCCceeeecCCCccccCCCCCCCCCCC
Q 021917 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-NYHFFPKSCCTSVNEVICHGIPDSRKLEDG 226 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~pspl-ny~~fp~~v~ts~n~~~~Hg~p~~r~L~~G 226 (305)
|+.||+|++|++++++++.+.++||+||.||++.+..++.+.|+...++ .+..+..++.+|.|...+|+.|++|+|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 6899999999999999999999999999999999999999998753332 233344578999999999999999999999
Q ss_pred CEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceee
Q 021917 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEI 301 (305)
Q Consensus 227 DiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~ 301 (305)
|+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++++||...+
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~ 155 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYR 155 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987653
No 13
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.97 E-value=1.8e-30 Score=252.28 Aligned_cols=163 Identities=19% Similarity=0.256 Sum_probs=145.2
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc-CCCCCCCCCCCCCceeeecCCCcc
Q 021917 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA-GGYPSPLNYHFFPKSCCTSVNEVI 213 (305)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~-G~~psplny~~fp~~v~ts~n~~~ 213 (305)
...++|+|||++||+.||+|++|++.+++.+.+.++||+||.||.+.+....... ..+.+ .+..|..++.+|.|..+
T Consensus 151 ~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~~~~~g~--~~~~~~~iv~sG~~~a~ 228 (391)
T TIGR02993 151 LVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGG--DYPAIVPLLPSGADASA 228 (391)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccCcCC--CcCCcccccccCccccC
Confidence 4567899999999999999999999999999999999999999999887654431 10111 01235567789999999
Q ss_pred ccCCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021917 214 CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (305)
Q Consensus 214 ~Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~ 293 (305)
+|+.|++++|++||+|+||+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++
T Consensus 229 pH~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~ 308 (391)
T TIGR02993 229 PHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLK 308 (391)
T ss_pred CCCCCCCCcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCce
Q 021917 294 MSGFSV 299 (305)
Q Consensus 294 ~~G~~v 299 (305)
++||..
T Consensus 309 ~~G~~~ 314 (391)
T TIGR02993 309 KYGIHK 314 (391)
T ss_pred HcCCcc
Confidence 999864
No 14
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.97 E-value=1.8e-29 Score=228.78 Aligned_cols=154 Identities=55% Similarity=0.863 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCC
Q 021917 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GD 227 (305)
|+.||+|+++++++++++.+.++||+||.||++.+...+.++|+.+..+++..||..+++|.|..++|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 68999999999999999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceee
Q 021917 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEI 301 (305)
Q Consensus 228 iV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~ 301 (305)
+|.+|+++.++||++|++|||++|+++++++++++.+.++++++++++|||++++||++++++++++.|+...+
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~~ 154 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVR 154 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997543
No 15
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.97 E-value=1.4e-29 Score=245.44 Aligned_cols=163 Identities=22% Similarity=0.298 Sum_probs=146.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCC----CCCCCceeeecCCCccccC
Q 021917 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLN----YHFFPKSCCTSVNEVICHG 216 (305)
Q Consensus 141 ~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~pspln----y~~fp~~v~ts~n~~~~Hg 216 (305)
.+|+++||+.||+|++|++++|+.+.+.++||+|+.||++.+++++.++++. ...+ +.+|+..+|.|+|+.++|+
T Consensus 12 ~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~-~~~~~~~~~~g~afpt~vSvN~~v~H~ 90 (389)
T TIGR00495 12 SLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAK-IFKKEKEMEKGIAFPTCISVNNCVGHF 90 (389)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh-hhcccccccCCCCCCeEEecCCeeeCC
Confidence 6899999999999999999999999999999999999999999999887654 2221 2333333677899999999
Q ss_pred CC--C--CCCCCCCCEEEEEeeceeCcEEeceeeEEEecC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 021917 217 IP--D--SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEV 287 (305)
Q Consensus 217 ~p--~--~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~-----~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~a 287 (305)
+| + ++.|++||+|+||+|+.++||++|++|||+||+ ++++++++++++++|++++|+.+|||++.+||+++
T Consensus 91 ~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~a 170 (389)
T TIGR00495 91 SPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEA 170 (389)
T ss_pred CCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 99 2 478999999999999999999999999999995 57889999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeecc
Q 021917 288 INRHATMSGFSVEIKQL 304 (305)
Q Consensus 288 i~~~~~~~G~~vv~~~~ 304 (305)
++++++++||++|+.++
T Consensus 171 i~~v~~~~G~~~v~~~~ 187 (389)
T TIGR00495 171 INKVAHSYGCTPVEGML 187 (389)
T ss_pred HHHHHHHcCCeecCCce
Confidence 99999999999998764
No 16
>PRK10879 proline aminopeptidase P II; Provisional
Probab=99.97 E-value=2.1e-29 Score=248.20 Aligned_cols=153 Identities=25% Similarity=0.402 Sum_probs=144.2
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccc
Q 021917 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (305)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~H 215 (305)
...+|+|||++||+.||+|++++..++..+++.++||+||.||++.+...+.++|+... .|+.+|++|.|..++|
T Consensus 167 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~~-----~~~~iv~~G~na~~~H 241 (438)
T PRK10879 167 VHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYP-----SYNTIVGSGENGCILH 241 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCCC-----CCCcEEEEcCcccccc
Confidence 34589999999999999999999999999999999999999999999999999997632 4788999999999999
Q ss_pred CCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021917 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (305)
Q Consensus 216 g~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~ 293 (305)
+.|++++|++||+|+||+++.++||++|++|||+| |+++++++++++++.++++++++++|||+++++|++++.+++.
T Consensus 242 ~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~ 320 (438)
T PRK10879 242 YTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMV 320 (438)
T ss_pred CCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999987654
No 17
>PRK15173 peptidase; Provisional
Probab=99.96 E-value=6.5e-29 Score=235.83 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=145.1
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccc
Q 021917 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (305)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~ 214 (305)
..+++|+|||++||+.||+|+++++.++..+.+.++||+||.||++.++.++.+.|... +..|+ ++.+|.+ ..+
T Consensus 88 ~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~----~~~~~-~i~~G~~-~~~ 161 (323)
T PRK15173 88 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETH----FSRFH-LISVGAD-FSP 161 (323)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCC----CCCCc-EEEECCC-Ccc
Confidence 45579999999999999999999999999999999999999999999998888876543 11233 5666665 568
Q ss_pred cCCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Q 021917 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (305)
Q Consensus 215 Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~ 294 (305)
|++|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++
T Consensus 162 h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~ 241 (323)
T PRK15173 162 KLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 241 (323)
T ss_pred CCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcee
Q 021917 295 SGFSVE 300 (305)
Q Consensus 295 ~G~~vv 300 (305)
.||.-.
T Consensus 242 ~G~~~~ 247 (323)
T PRK15173 242 SGLPNY 247 (323)
T ss_pred cCCccc
Confidence 999743
No 18
>PRK14575 putative peptidase; Provisional
Probab=99.96 E-value=5e-29 Score=243.36 Aligned_cols=160 Identities=24% Similarity=0.364 Sum_probs=146.1
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccc
Q 021917 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (305)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~ 214 (305)
..+++|+|||++||+.||+|+++++++++++.+.++||+||.||++.++.++.+.|....+ .| .++.+|.+ ..+
T Consensus 171 ~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~~----~~-~~v~~G~~-~~~ 244 (406)
T PRK14575 171 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFS----RF-HLISVGAD-FSP 244 (406)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcCC----cC-ceEEECCC-ccc
Confidence 3457999999999999999999999999999999999999999999999998888765311 12 35667766 568
Q ss_pred cCCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Q 021917 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (305)
Q Consensus 215 Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~ 294 (305)
|++|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++
T Consensus 245 h~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~ 324 (406)
T PRK14575 245 KLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 324 (406)
T ss_pred CCCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcee
Q 021917 295 SGFSVE 300 (305)
Q Consensus 295 ~G~~vv 300 (305)
.||.-.
T Consensus 325 ~G~~~~ 330 (406)
T PRK14575 325 SGLPNY 330 (406)
T ss_pred cCCccc
Confidence 999754
No 19
>PRK14576 putative endopeptidase; Provisional
Probab=99.96 E-value=8.9e-29 Score=241.51 Aligned_cols=161 Identities=23% Similarity=0.334 Sum_probs=147.4
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccc
Q 021917 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (305)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~ 214 (305)
...++|+|||++||+.||+|+++++.++..+.+.++||+||.||++.++.++.+.|... +..| .++.+|.| ..+
T Consensus 170 ~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~----~~~~-~~v~~G~~-~~~ 243 (405)
T PRK14576 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETN----FSRF-NLISVGDN-FSP 243 (405)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCc----CCCC-CEEEECCc-ccC
Confidence 35579999999999999999999999999999999999999999999999999887531 1113 46888887 568
Q ss_pred cCCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Q 021917 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (305)
Q Consensus 215 Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~ 294 (305)
|+.|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++
T Consensus 244 h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~ 323 (405)
T PRK14576 244 KIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKT 323 (405)
T ss_pred CCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceee
Q 021917 295 SGFSVEI 301 (305)
Q Consensus 295 ~G~~vv~ 301 (305)
+||.-.+
T Consensus 324 ~G~~~~~ 330 (405)
T PRK14576 324 SGLPHYN 330 (405)
T ss_pred cCCcccc
Confidence 9997543
No 20
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=99.96 E-value=1.2e-28 Score=224.39 Aligned_cols=143 Identities=28% Similarity=0.430 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCC
Q 021917 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GD 227 (305)
|+.||+|+++++++++++.+.++||+||.||++.++.++.+.|+.+ .|+.++++|.|...+|+.|++++|++||
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~~------~~~~~v~~g~~~~~~H~~~~~~~l~~Gd 74 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL------AYSYIVAAGSNAAILHYVHNDQPLKDGD 74 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCCc------CCCCeEEECCCccccCCCcCCCcCCCCC
Confidence 6899999999999999999999999999999999999999999883 3788999999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcC
Q 021917 228 IVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSG 296 (305)
Q Consensus 228 iV~iDv~~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G 296 (305)
+|+||+++.++||++|++|||++ |+++++++++++++.++++++++++|||++++||++++++++++.|
T Consensus 75 ~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~ 144 (243)
T cd01087 75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGL 144 (243)
T ss_pred EEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6899999999999999999999999999999999999999998663
No 21
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=99.96 E-value=3e-28 Score=215.28 Aligned_cols=147 Identities=28% Similarity=0.479 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCC
Q 021917 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GD 227 (305)
|+.||+|+++++.++..+.+.++||+||.||.+.++..+.++|+++ .+||.++++|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~-----~~~~~~v~~g~~~~~~h~~~~~~~l~~gd 75 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-----PSFDTIVASGPNSALPHGVPSDRKIEEGD 75 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC-----CCCCcEEEECccccccCCCCCCcCcCCCC
Confidence 6899999999999999999999999999999999999999999874 25899999999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCce
Q 021917 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299 (305)
Q Consensus 228 iV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~v 299 (305)
+|+||+++.++||++|++|||++|+++++++++++++.++++.+++++|||++++||+++++++++++||..
T Consensus 76 ~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~ 147 (208)
T cd01092 76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGE 147 (208)
T ss_pred EEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863
No 22
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.96 E-value=1.2e-27 Score=216.35 Aligned_cols=154 Identities=25% Similarity=0.386 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC--CCC-CCC--CCCCCceeeecCCCccccCCC----
Q 021917 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG--YPS-PLN--YHFFPKSCCTSVNEVICHGIP---- 218 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~--~ps-pln--y~~fp~~v~ts~n~~~~Hg~p---- 218 (305)
+++||+|++|++++++.+.+.++||+||.||+..+..++.+... ++. ..+ ...||. +.+.|+.++|++|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~--~v~~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPT--CISVNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCe--EeccCceeecCCCCCCC
Confidence 36899999999999999999999999999998888777776322 222 122 234554 4457999999996
Q ss_pred CCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCH-----HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021917 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE-----ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (305)
Q Consensus 219 ~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~-----e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~ 293 (305)
++++|++||+|+||+++.++||++|++|||++|++++ +++++++++.++++++++++|||++++||+++++++++
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~ 158 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIV 158 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999998874 89999999999999999999999999999999999999
Q ss_pred hcCCceeeec
Q 021917 294 MSGFSVEIKQ 303 (305)
Q Consensus 294 ~~G~~vv~~~ 303 (305)
++||++++..
T Consensus 159 ~~G~~~~~~~ 168 (228)
T cd01089 159 DYGCTPVEGV 168 (228)
T ss_pred HcCCEEecCc
Confidence 9998887754
No 23
>PRK13607 proline dipeptidase; Provisional
Probab=99.95 E-value=1.7e-27 Score=234.68 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=137.1
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccC
Q 021917 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (305)
Q Consensus 137 ~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg 216 (305)
..+|+|||++||+.||+|++++.++++.+++.++||+||.||++.+.... ..++ . ...|+.++++|.|..++|+
T Consensus 156 ~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~--~---~~~y~~iva~G~naa~~H~ 229 (443)
T PRK13607 156 HYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRD--N---DVPYGNIVALNEHAAVLHY 229 (443)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCC--c---CCCCCcEEEecCcceEecC
Confidence 46899999999999999999999999999999999999999997654332 2222 1 2358899999999999999
Q ss_pred CCCCC-CCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---
Q 021917 217 IPDSR-KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA--- 292 (305)
Q Consensus 217 ~p~~r-~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~--- 292 (305)
.|+++ ++++||+|+||+++.++||++|++|||+ |+++++++++++++.++++++++++|||++++||+.++.+++
T Consensus 230 ~~~~~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~ 308 (443)
T PRK13607 230 TKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKL 308 (443)
T ss_pred CccCCCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 99875 6899999999999999999999999999 888999999999999999999999999999999999887665
Q ss_pred -HhcCCc
Q 021917 293 -TMSGFS 298 (305)
Q Consensus 293 -~~~G~~ 298 (305)
.+.|+.
T Consensus 309 L~~~Gl~ 315 (443)
T PRK13607 309 LRKFQIV 315 (443)
T ss_pred HHHcCCC
Confidence 556665
No 24
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.95 E-value=7.8e-27 Score=219.03 Aligned_cols=148 Identities=29% Similarity=0.392 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCC---CC
Q 021917 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SR 221 (305)
Q Consensus 145 ~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~---~r 221 (305)
-+||+.||+|++|++++++.+.+.++||+|+.||.+.++..+.+.|+.++ ||..+ +.|+..+|+.|. ++
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~a------Fp~~v--s~n~~~~H~~p~~~d~~ 73 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPA------FPCNI--SINECAAHFTPKAGDKT 73 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCCC------CCcce--ecCCEeeCCCCCCCcCc
Confidence 47899999999999999999999999999999999999999999999864 88765 578999999985 67
Q ss_pred CCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceee
Q 021917 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEI 301 (305)
Q Consensus 222 ~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~ 301 (305)
.|++||+|.||+++.++||++|++|||++|+ ..+++++++.+|++++++++|||++++||+++++++++++||..++
T Consensus 74 ~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~---~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i~ 150 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPIS 150 (295)
T ss_pred cCCCCCEEEEEEeEEECCEEEEEEEEEEeCc---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeec
Confidence 8999999999999999999999999999995 3689999999999999999999999999999999999999999876
Q ss_pred ec
Q 021917 302 KQ 303 (305)
Q Consensus 302 ~~ 303 (305)
++
T Consensus 151 ~~ 152 (295)
T TIGR00501 151 NL 152 (295)
T ss_pred CC
Confidence 54
No 25
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.95 E-value=1.4e-26 Score=227.34 Aligned_cols=150 Identities=22% Similarity=0.248 Sum_probs=136.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH----cCCCCCCCCCCCCCceeeecCCCcccc
Q 021917 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT----AGGYPSPLNYHFFPKSCCTSVNEVICH 215 (305)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~----~G~~psplny~~fp~~v~ts~n~~~~H 215 (305)
+..+|++||+.||+|++|++++++.+.+.++||+|+.||+..+...+.+ .|+.. ..+||+ ++|.|++.+|
T Consensus 150 ~~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~----g~aFPt--~vS~N~~aaH 223 (470)
T PTZ00053 150 LEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKC----GWAFPT--GCSLNHCAAH 223 (470)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcc----cCCCCc--eeecCccccC
Confidence 3458999999999999999999999999999999999999988876554 35432 246997 5689999999
Q ss_pred CCCC---CCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021917 216 GIPD---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (305)
Q Consensus 216 g~p~---~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~ 292 (305)
++|+ +++|++||+|.||+|+.++||++|++|||+|| +++++|++++++|+++||++++||++++||+++|++++
T Consensus 224 ~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevi 300 (470)
T PTZ00053 224 YTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVI 300 (470)
T ss_pred CCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9996 68899999999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred HhcCCc
Q 021917 293 TMSGFS 298 (305)
Q Consensus 293 ~~~G~~ 298 (305)
+++||+
T Consensus 301 es~G~e 306 (470)
T PTZ00053 301 ESYEVE 306 (470)
T ss_pred HHcCCc
Confidence 999985
No 26
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=99.95 E-value=5.9e-27 Score=207.49 Aligned_cols=143 Identities=34% Similarity=0.518 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA-TITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~-~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GD 227 (305)
|.||+|+++++++++++.+.++||+||.||.+.+.++ +.++|... .+||.++++|.|..++|+.|++++|++||
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~gd 75 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEE-----PAFPPIVGSGPNTDLPHYTPTDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTE-----ESSESEEEECCCCGETTTBCCSSBESTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCc-----ccCCceEecCCcceecceeccceeeecCC
Confidence 6899999999999999999999999999999999998 56667432 35888999999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCC
Q 021917 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (305)
Q Consensus 228 iV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~ 297 (305)
+|.||+++.++||++|++|||++| ++++++++++.++++++.+++.+|||++++||++++.+.++++||
T Consensus 76 ~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~ 144 (207)
T PF00557_consen 76 IVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGL 144 (207)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTE
T ss_pred cceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcc
Confidence 999999999999999999999999 999999999999999999999999999999999999999999998
No 27
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.94 E-value=3.6e-26 Score=214.16 Aligned_cols=146 Identities=33% Similarity=0.512 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCC---CCCC
Q 021917 147 QIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (305)
Q Consensus 147 EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~---~r~L 223 (305)
+|+.||+|++|++++++.+.+.++||+||.||++.++.++.+.|+.++ ||..+ +.|+..+|+.|. +++|
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~~a------fp~~v--s~n~~~~H~~p~~~d~~~l 72 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FPCNI--SINEVAAHYTPSPGDERVF 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCccC------CCCEE--eeCCCccCCCCCCCCCccc
Confidence 589999999999999999999999999999999999999999998875 88654 567888999986 6889
Q ss_pred CCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceeeec
Q 021917 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEIKQ 303 (305)
Q Consensus 224 ~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~~~ 303 (305)
++||+|.||+++.++||++|++|||++| ++.+++++++.++++++++++|||++++||+++++++++++||..++++
T Consensus 73 ~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~~~~ 149 (291)
T PRK08671 73 PEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNL 149 (291)
T ss_pred CCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccCCC
Confidence 9999999999999999999999999999 4788999999999999999999999999999999999999999876543
No 28
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=99.94 E-value=6.6e-26 Score=197.89 Aligned_cols=145 Identities=33% Similarity=0.583 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCC
Q 021917 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GD 227 (305)
|+.||+|+++++.+++.+.+.++||+||.||.+.++..+.++|+++ .|+.++.+|.|..++|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~v~~g~~~~~~h~~~~~~~i~~gd 74 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD 74 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcEEEECccccCcCCCCCCCCcCCCC
Confidence 5789999999999999999999999999999999999999999943 3777888888889999999999999999
Q ss_pred EEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCc
Q 021917 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (305)
Q Consensus 228 iV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~ 298 (305)
+|++|+++.++||++|++|||++|+++++++++++.+.++++.+++.+|||+++.||+++++++++++|+.
T Consensus 75 ~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~ 145 (207)
T cd01066 75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLG 145 (207)
T ss_pred EEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999983
No 29
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.94 E-value=1.1e-25 Score=210.93 Aligned_cols=145 Identities=32% Similarity=0.430 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCC---CCCC
Q 021917 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS---RKLE 224 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~---r~L~ 224 (305)
++.||+|++|++++++++.+.++||+||.||++.+...+.++|+.++ ||. ++|.|+..+|+.|+. +.|+
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~a------fp~--~is~n~~~~H~~p~~~d~~~l~ 72 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPV--NLSINECAAHYTPNAGDDTVLK 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCCC------CCc--eeccCCEeeCCCCCCCCCcccC
Confidence 36899999999999999999999999999999999999999998764 884 568999999999964 8899
Q ss_pred CCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCceeeec
Q 021917 225 DGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEIKQ 303 (305)
Q Consensus 225 ~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv~~~ 303 (305)
+||+|.||+++.++||++|++|||++|+ ++++++++++++++++++++|||++++||+++++++++++||..++.+
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~~~~ 148 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNL 148 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEeecC
Confidence 9999999999999999999999999985 788999999999999999999999999999999999999999987654
No 30
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=99.93 E-value=5.9e-25 Score=198.71 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCC---CCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pG--vTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~---~r~L 223 (305)
+.||.+..+ .++++.+.+.++|| +||.||++.+++++...|.++. ..||.+|++|.|+.++|++|+ +|+|
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~----~~f~~~v~~g~n~~~~H~~p~~~~~r~l 79 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVG----LSFDTISGFGPNGAIVHYSPTEESNRKI 79 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcC----CCcceEEEecCccCcCCCCcCcccCccc
Confidence 456666666 49999999999999 9999999999988777765432 258999999999999999999 8999
Q ss_pred CCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHhcCCc
Q 021917 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVK-PGVRFREIGEVINRHATMSGFS 298 (305)
Q Consensus 224 ~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~k-PG~~~~eI~~ai~~~~~~~G~~ 298 (305)
++||+|+||+++.++||++|++|||++|+++++++++++++.+++.++++.++ ||+++++|++++++++.+.|+.
T Consensus 80 ~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~ 155 (224)
T cd01085 80 SPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLD 155 (224)
T ss_pred CCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999884 9999999999999999998875
No 31
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=99.90 E-value=7.6e-23 Score=187.13 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hcCCC--CcHHHHHHHHHHHHHHcCCCCCCCC----CCCCCceeeecCCC-cccc
Q 021917 148 IERMRETCRIAREVLDAAAR-----MIRPG--VTTDEIDRVVHEATITAGGYPSPLN----YHFFPKSCCTSVNE-VICH 215 (305)
Q Consensus 148 Ie~mR~A~~ia~~~l~~~~~-----~i~pG--vTe~EI~~~v~~~~~~~G~~pspln----y~~fp~~v~ts~n~-~~~H 215 (305)
++.||+|++++..+|..... .|.+| +|+.+|+..+..++.+.+.....++ -..||.++++|.|. ..+|
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l~h 80 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLLKS 80 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcCcccCCeEeECcCcccCCC
Confidence 46899999999999976555 99999 9999999999999998875421122 24699999999998 8999
Q ss_pred CCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhc
Q 021917 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (305)
Q Consensus 216 g~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~ 295 (305)
+.++++.+..|++|.+|++++|+|||+|++|||++| ++++++++|+++.++++++++++|||++++||++++.+++++.
T Consensus 81 ~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~ 159 (243)
T cd01091 81 SSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKK 159 (243)
T ss_pred CCCCccccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998 7999999999999999999999999999999999999999998
Q ss_pred CCce
Q 021917 296 GFSV 299 (305)
Q Consensus 296 G~~v 299 (305)
|.+.
T Consensus 160 ~~~~ 163 (243)
T cd01091 160 KPEL 163 (243)
T ss_pred ChhH
Confidence 7544
No 32
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=187.85 Aligned_cols=152 Identities=20% Similarity=0.366 Sum_probs=141.1
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccC
Q 021917 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (305)
Q Consensus 137 ~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg 216 (305)
.+.|.|||+.||+.||.|++|+++++.+++++++||+.|.++...+.......|.--. .+|..++|+|.|..+.|+
T Consensus 180 ~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh----~sYtcIc~sG~ns~vLHY 255 (492)
T KOG2737|consen 180 AECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH----LSYTCICASGDNSAVLHY 255 (492)
T ss_pred hhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccc----cccceeeecCCCcceeec
Confidence 4689999999999999999999999999999999999999999999888888876322 247889999999999998
Q ss_pred ----CCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021917 217 ----IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291 (305)
Q Consensus 217 ----~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~ 291 (305)
.|+++.+++||.+++|+++.|.+|.+|+|++|.+ |+.+++|+.+|+++..++.++++++|||+.+-|++....++
T Consensus 256 gha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La~kv 335 (492)
T KOG2737|consen 256 GHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKV 335 (492)
T ss_pred cccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 8999999999999999999999999999999999 89999999999999999999999999999999998877665
Q ss_pred H
Q 021917 292 A 292 (305)
Q Consensus 292 ~ 292 (305)
+
T Consensus 336 l 336 (492)
T KOG2737|consen 336 L 336 (492)
T ss_pred H
Confidence 4
No 33
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=179.24 Aligned_cols=156 Identities=22% Similarity=0.322 Sum_probs=145.3
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccC
Q 021917 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (305)
Q Consensus 137 ~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg 216 (305)
..+|.|||+.|++.||+||.|+.+++-..+..-|++..|..|.+.++-.+..+|+.- ..||..|++|.|....|+
T Consensus 223 ~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad~-----~AYpPVVAgG~na~tIHY 297 (488)
T KOG2414|consen 223 ERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGADR-----LAYPPVVAGGKNANTIHY 297 (488)
T ss_pred HHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCccc-----cccCCeeecCcccceEEE
Confidence 358999999999999999999999999999999999999999999999999999974 368999999999999999
Q ss_pred CCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHH--
Q 021917 217 IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKP--GVRFREIGEVINRH-- 291 (305)
Q Consensus 217 ~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~~kP--G~~~~eI~~ai~~~-- 291 (305)
.-++..|.+||.|++|.++.++||.+|++|||.+ |+.++-|++||+++...+.+.|+.|+| |++.++|+....+.
T Consensus 298 ~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~ 377 (488)
T KOG2414|consen 298 VRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLG 377 (488)
T ss_pred eecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999 99999999877655
Q ss_pred --HHhcCC
Q 021917 292 --ATMSGF 297 (305)
Q Consensus 292 --~~~~G~ 297 (305)
+++.|.
T Consensus 378 ~~Lk~lGI 385 (488)
T KOG2414|consen 378 QELKELGI 385 (488)
T ss_pred HHHHHhCc
Confidence 444564
No 34
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.66 E-value=2.2e-15 Score=141.27 Aligned_cols=162 Identities=23% Similarity=0.349 Sum_probs=139.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC--CCCC---CCCCCCCceeeecCCCcccc
Q 021917 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG--YPSP---LNYHFFPKSCCTSVNEVICH 215 (305)
Q Consensus 141 ~vKs~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~--~psp---lny~~fp~~v~ts~n~~~~H 215 (305)
.|-++..+..+|.|+.|+..+|..+.+++.||++..||...-..++.++-. |-.. --...||+ |.++|+.+||
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT--~Isvnncv~h 91 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPT--SISVNNCVCH 91 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccc--eecccceeec
Confidence 567889999999999999999999999999999999998776666654311 1110 01235885 6689999999
Q ss_pred CCCC----CCCCCCCCEEEEEeeceeCcEEeceeeEEEecC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021917 216 GIPD----SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 286 (305)
Q Consensus 216 g~p~----~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~-----~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ 286 (305)
+.|- +..|++||+|.||+|+..+||.+-.+.|++|+. +.....+++.++..|.++++..++||.+-..|-+
T Consensus 92 ~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkpgn~n~~vT~ 171 (398)
T KOG2776|consen 92 FSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKPGNTNTQVTR 171 (398)
T ss_pred cCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCCCCCCchhhH
Confidence 9883 457999999999999999999999999999984 4577899999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeeecc
Q 021917 287 VINRHATMSGFSVEIKQL 304 (305)
Q Consensus 287 ai~~~~~~~G~~vv~~~~ 304 (305)
+|.+.+.++|+-.|.+||
T Consensus 172 ~i~k~aas~~c~pVegml 189 (398)
T KOG2776|consen 172 AIVKTAASYGCKPVEGML 189 (398)
T ss_pred HHHHHHHHhCCcccccch
Confidence 999999999999998876
No 35
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.41 E-value=1.8e-12 Score=130.88 Aligned_cols=161 Identities=14% Similarity=0.271 Sum_probs=130.1
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHH-----HHHhcCCC--CcHHHHHHHHHHHHHHc----CCCCCCCCCCCCCc
Q 021917 135 DLQHVVEIKTPDQIERMRETCRIAREVLDA-----AARMIRPG--VTTDEIDRVVHEATITA----GGYPSPLNYHFFPK 203 (305)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~-----~~~~i~pG--vTe~EI~~~v~~~~~~~----G~~psplny~~fp~ 203 (305)
.+..+.+||++.||+.||.|+.++..+|.. +..+|..| +|..-+...+..++.+. |..|..+. +.||.
T Consensus 130 ~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~~~d-~cY~P 208 (960)
T KOG1189|consen 130 GLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPDLLD-MCYPP 208 (960)
T ss_pred hhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCccccc-cccCh
Confidence 345688999999999999999999999973 34455555 57777777777666653 33443333 45899
Q ss_pred eeeecCCCcc-ccCCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Q 021917 204 SCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFR 282 (305)
Q Consensus 204 ~v~ts~n~~~-~Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~ 282 (305)
++.+|.+... +-...+++.| | +|+..+|++|++|++.++|||+| .++.++++.|+....++.++++.||||+..+
T Consensus 209 IiqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~~lrpG~ki~ 284 (960)
T KOG1189|consen 209 IIQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILKLLRPGTKIG 284 (960)
T ss_pred hhhcCCccccccccccccccc--c-eEEeeccchhhhhhccccceeee-cchHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 9999988544 4445667778 4 88888999999999999999999 4899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcee
Q 021917 283 EIGEVINRHATMSGFSVE 300 (305)
Q Consensus 283 eI~~ai~~~~~~~G~~vv 300 (305)
+||.++.+++++.+-..+
T Consensus 285 dVY~~~l~~v~k~~Pel~ 302 (960)
T KOG1189|consen 285 DVYEKALDYVEKNKPELV 302 (960)
T ss_pred HHHHHHHHHHHhcCcchh
Confidence 999999999998765443
No 36
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.39 E-value=1.3e-13 Score=139.78 Aligned_cols=48 Identities=35% Similarity=0.827 Sum_probs=43.1
Q ss_pred cccc-cCCccccccchhhhcCCCCCCCcccChhhhhhchhHHHHHhhhh
Q 021917 14 SCVR-CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKA 61 (305)
Q Consensus 14 ~c~~-c~~~~~l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h~~~ 61 (305)
+|.. =+|+|+||||+|+|+|||+..||||||+|||.+|++||.+|+.+
T Consensus 64 ~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~ 112 (606)
T PLN03144 64 VCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERA 112 (606)
T ss_pred eEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHHHHHHHHHh
Confidence 3555 48899999999999999877899999999999999999999764
No 37
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.27 E-value=5e-11 Score=109.97 Aligned_cols=147 Identities=23% Similarity=0.249 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----HcCCCCCCCCCCCCCceeeecCCCccccCCC
Q 021917 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (305)
Q Consensus 143 Ks~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~----~~G~~psplny~~fp~~v~ts~n~~~~Hg~p 218 (305)
...+..+-+|+|+.+.+++-..+.+.|+||+|..||.+.++.... +.|.. +..+||+ ..|.|.+..|++|
T Consensus 80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~----aGi~FPt--G~SlN~cAAHyTp 153 (397)
T KOG2775|consen 80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLN----AGIGFPT--GCSLNHCAAHYTP 153 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcccc----ccccCCC--cccccchhhhcCC
Confidence 345567789999999999999999999999999999998885443 34433 2357995 4578999999999
Q ss_pred C---CCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhc
Q 021917 219 D---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (305)
Q Consensus 219 ~---~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~ 295 (305)
+ ..+|+.+|++.||++...+|-..|.+.|+.+. +....|+.+++++...+|+...-.++..||+++|+++...+
T Consensus 154 NaGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F~---p~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEVmeSy 230 (397)
T KOG2775|consen 154 NAGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAFN---PKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESY 230 (397)
T ss_pred CCCCceeeeecceEEEeccccccCeEeeeeeEEeeC---ccccHHHHHHHHHHhhhhhhcCceeeehhhhHHHHHHhhhe
Confidence 6 45899999999999999999999999999984 56778999999999999999999999999999999999987
Q ss_pred CCc
Q 021917 296 GFS 298 (305)
Q Consensus 296 G~~ 298 (305)
-..
T Consensus 231 EvE 233 (397)
T KOG2775|consen 231 EVE 233 (397)
T ss_pred EEE
Confidence 544
No 38
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.06 E-value=1.5e-09 Score=108.14 Aligned_cols=159 Identities=15% Similarity=0.175 Sum_probs=129.3
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHH----HHHhcCCC--CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeee-c
Q 021917 136 LQHVVEIKTPDQIERMRETCRIAREVLDA----AARMIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT-S 208 (305)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~----~~~~i~pG--vTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~t-s 208 (305)
...++++|++.|++.||.+----..|+-. ....+.-| +||.+++..+.++=.+...+-. ..|+++..+ |
T Consensus 301 i~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmg----lSFeTIS~s~G 376 (606)
T KOG2413|consen 301 ISRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMG----LSFETISSSVG 376 (606)
T ss_pred HHHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccC----cCcceeeccCC
Confidence 34577999999999998765333333333 33445556 8999999999987777665532 359999866 9
Q ss_pred CCCccccCCCCC---CCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHH
Q 021917 209 VNEVICHGIPDS---RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKP-GVRFREI 284 (305)
Q Consensus 209 ~n~~~~Hg~p~~---r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kP-G~~~~eI 284 (305)
.|.++.|+.|.. +.+-+..+.++|-|+.|.-=..|+|||+.+|+|+++.++.+..+....-+...++-| |+....+
T Consensus 377 ~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~l 456 (606)
T KOG2413|consen 377 PNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVL 456 (606)
T ss_pred CCceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchh
Confidence 999999999974 488999999999999987778899999999999999999999999999888888776 8888888
Q ss_pred HHHHHHHHHhcCCc
Q 021917 285 GEVINRHATMSGFS 298 (305)
Q Consensus 285 ~~ai~~~~~~~G~~ 298 (305)
....+..+.+.|..
T Consensus 457 D~laR~~LW~~gLD 470 (606)
T KOG2413|consen 457 DALARSALWKAGLD 470 (606)
T ss_pred HHHHHHHHHhhccc
Confidence 88889888887754
No 39
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=98.80 E-value=5.1e-08 Score=97.56 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=116.0
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHh----cCCC--CcHHHHHHHHHH------HHHHcCCCCCCCC----CC
Q 021917 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARM----IRPG--VTTDEIDRVVHE------ATITAGGYPSPLN----YH 199 (305)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~~~~~----i~pG--vTe~EI~~~v~~------~~~~~G~~pspln----y~ 199 (305)
+..+-.+|+.+||+.+|.+++.....|....+. +..+ +|...+...+.. ++.......+.++ -+
T Consensus 164 Lsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~~d~lew 243 (1001)
T COG5406 164 LSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDIDLDQLEW 243 (1001)
T ss_pred hhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccccchhhhhh
Confidence 345778999999999999999999888743332 2222 333333333322 1111111111111 12
Q ss_pred CCCceeeecCCCcc-ccCCCCCCCCCCCCEEEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCC
Q 021917 200 FFPKSCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPG 278 (305)
Q Consensus 200 ~fp~~v~ts~n~~~-~Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG 278 (305)
.|..++.+|..-.. +-...+++.| -||.|.+.+|.+|+||++.++|||++. |+.|+++-|+-++.+|...+..+|||
T Consensus 244 ~ytpiiqsg~~~Dl~psa~s~~~~l-~gd~vl~s~GiRYn~YCSn~~RT~l~d-p~~e~~~Ny~fl~~lQk~i~~~~rpG 321 (1001)
T COG5406 244 CYTPIIQSGGSIDLTPSAFSFPMEL-TGDVVLLSIGIRYNGYCSNMSRTILTD-PDSEQQKNYEFLYMLQKYILGLVRPG 321 (1001)
T ss_pred hcchhhccCceeecccccccCchhh-cCceEEEEeeeeeccccccccceEEeC-CchHhhhhHHHHHHHHHHHHhhcCCC
Confidence 36667777765332 2223334444 489999999999999999999999994 89999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCcee
Q 021917 279 VRFREIGEVINRHATMSGFSVE 300 (305)
Q Consensus 279 ~~~~eI~~ai~~~~~~~G~~vv 300 (305)
+..++|+..+.+++.+.|-..+
T Consensus 322 ~~~g~iY~~~~~yi~~~~pel~ 343 (1001)
T COG5406 322 TDSGIIYSEAEKYISSNGPELG 343 (1001)
T ss_pred CCchhHHHHHHHHHHhcCCccC
Confidence 9999999999999999876543
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=97.87 E-value=5.2e-06 Score=53.96 Aligned_cols=35 Identities=40% Similarity=1.115 Sum_probs=30.0
Q ss_pred ccccCCccccccchhhhcCCCCCCCcccChhhhhhchhHHHH
Q 021917 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKS 56 (305)
Q Consensus 15 c~~c~~~~~l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~ 56 (305)
|..|++++.+.|+.|. ..+|||.+|++.+|..||.
T Consensus 1 C~~C~~~~~~~C~~C~-------~~~YCs~~Cq~~~w~~Hk~ 35 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCK-------SVYYCSEECQRADWPYHKF 35 (37)
T ss_dssp -TTTSSCSSEEETTTS-------SSEESSHHHHHHHHHHHCC
T ss_pred CcCCCCCcCCcCCCCC-------CEEecCHHHHHHHHHHHhh
Confidence 6679998888999996 4789999999999999975
No 41
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.62 E-value=0.001 Score=57.53 Aligned_cols=102 Identities=25% Similarity=0.308 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCE
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDi 228 (305)
+.+|++.+++.++++.+.+.++||++..||.+.+.+.+.+.|...... +.+.-.+.....+...-...++.+|++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~--~~~Gh~iG~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFG--HRTGHGIGLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCC--CCCccccCcccCCCCCcCCCCCCCcCCCCE
Confidence 578889999999999999999999999999999999999998641111 111111222111111101123568999999
Q ss_pred EEEEeeceeC-cEEeceeeEEEecC
Q 021917 229 VNIDVTVYYK-GVHGDLNETYFVGN 252 (305)
Q Consensus 229 V~iDv~~~~~-GY~~D~~RT~~vG~ 252 (305)
+.|+.+.+.. ++-.-+..|++|.+
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEEeC
Confidence 9999999877 58888999999864
No 42
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.55 E-value=2.7e-05 Score=72.31 Aligned_cols=40 Identities=38% Similarity=0.917 Sum_probs=34.9
Q ss_pred ccccccCCccc-cccchhhhcCCCCCCCcccChhhhhhchhHHHHHhh
Q 021917 13 LSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (305)
Q Consensus 13 ~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h~ 59 (305)
..|+.||.+.. .+|..|+.. -||||+|.|-.|-.||++.+
T Consensus 320 ~fCstCG~~ga~KrCs~CKav-------~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 320 QFCSTCGHPGAKKRCSQCKAV-------AYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred ccccccCCCCccchhhhhHHH-------HHHHHHHHHhhhHHHHHHHH
Confidence 45888998766 999999964 38999999999999999886
No 43
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.33 E-value=0.0032 Score=55.26 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCC-CCCCCCCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-DSRKLEDGD 227 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p-~~r~L~~GD 227 (305)
+.+|++...+.++++.+.+.++||++..||.+.+++.+.+.|..+......++ .+.....+. +.-.+ ++++|++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh--~iG~~~~e~-p~i~~~~~~~l~~gm 179 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH--GVGLEVHEA-PYISPGSDDVLEEGM 179 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCcc--ccCcccCcC-CCcCCCCCCCcCCCC
Confidence 46678888999999999999999999999999999999998864311110111 111111111 11112 467899999
Q ss_pred EEEEEeeceeCcE-EeceeeEEEec
Q 021917 228 IVNIDVTVYYKGV-HGDLNETYFVG 251 (305)
Q Consensus 228 iV~iDv~~~~~GY-~~D~~RT~~vG 251 (305)
++.|+.+.+..|+ -.-+..|++|.
T Consensus 180 v~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 180 VFTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred EEEECCeEEecCCCEEEeeeEEEEC
Confidence 9999998876544 44467888875
No 44
>PRK05716 methionine aminopeptidase; Validated
Probab=97.13 E-value=0.0058 Score=55.62 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--cccC-CC-CCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-IP-DSRKLED 225 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~--~~Hg-~p-~~r~L~~ 225 (305)
..|++..++.++++.+.+.++||++-.||.+.+++.+.+.|..+. .++.++. +.....+. +.++ .+ ++.+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~-~~~~GHg--iG~~~~e~p~~~~~~~~~~~~~le~ 195 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV-REYCGHG--IGRKFHEEPQIPHYGAPGDGPVLKE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCccccc--cCCccCCCCccCcCCCCCCCCEecC
Confidence 456677788899999999999999999999999999999887642 2222222 22221111 1111 12 3578999
Q ss_pred CCEEEEEeecee------------------CcEEeceeeEEEecC
Q 021917 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (305)
Q Consensus 226 GDiV~iDv~~~~------------------~GY~~D~~RT~~vG~ 252 (305)
|.++.|+.+.+. +++-.-+..|++|.+
T Consensus 196 Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~ 240 (252)
T PRK05716 196 GMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTE 240 (252)
T ss_pred CCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcC
Confidence 999999988764 345667788888864
No 45
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=96.99 E-value=0.011 Score=53.73 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--cccC-C-CCCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-I-PDSRKLED 225 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~--~~Hg-~-p~~r~L~~ 225 (305)
.+|++..++.++++.+.+.++||+|-.||...+.+.+.+.|..+. .++.++ .+.....+. +... . .++.+|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~-~~~~GH--giG~~~~e~p~i~~~~~~~~~~~l~~ 193 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV-REYCGH--GIGRKFHEEPQIPNYGKKFTNVRLKE 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCccCC--ccCcccCCCCccCCcCcCCCCCEecC
Confidence 456777788899999999999999999999999999999886542 122222 122222221 1111 1 13678999
Q ss_pred CCEEEEEeecee------------------CcEEeceeeEEEecC
Q 021917 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (305)
Q Consensus 226 GDiV~iDv~~~~------------------~GY~~D~~RT~~vG~ 252 (305)
|.++.|+.+.+. +++-.-+..|++|.+
T Consensus 194 gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~ 238 (247)
T TIGR00500 194 GMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 (247)
T ss_pred CCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcC
Confidence 999999988775 245566788888854
No 46
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.96 E-value=0.014 Score=52.71 Aligned_cols=100 Identities=15% Similarity=0.245 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--c-ccCCC-CCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--I-CHGIP-DSRKLED 225 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~--~-~Hg~p-~~r~L~~ 225 (305)
.+|++..++.++++.+.++++||++-.||.+.+.+.+.+.|.... .++.++. +.....+. + .+..+ ++++|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~-~~~~GHg--iG~~~~e~p~~~~~~~~~~~~~le~ 185 (238)
T cd01086 109 EAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVV-REFGGHG--IGRKFHEEPQIPNYGRPGTGPKLKP 185 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCccee-cCccccC--CCCccccCCCcCCccCCCCCCEecC
Confidence 456788888999999999999999999999999999999987542 2222221 22211111 1 12223 3578999
Q ss_pred CCEEEEEeecee------------------CcEEeceeeEEEecC
Q 021917 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (305)
Q Consensus 226 GDiV~iDv~~~~------------------~GY~~D~~RT~~vG~ 252 (305)
|.++.|+.+.+. +.+-.-+..|++|.+
T Consensus 186 Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte 230 (238)
T cd01086 186 GMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITE 230 (238)
T ss_pred CCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcC
Confidence 999999998874 224455677888854
No 47
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=96.82 E-value=0.012 Score=57.66 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc----cccCCC-CCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV----ICHGIP-DSRKLE 224 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~----~~Hg~p-~~r~L~ 224 (305)
.+|++.+++.++.+.++++++||+|-.||++.+.+.+.+.|... ....+++ +..+.... .+.-.+ ++.+|+
T Consensus 271 ~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~--~h~~Ghg--iGl~~~~~~~e~~~~l~~~~~~~L~ 346 (391)
T TIGR02993 271 AFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHK--DSRTGYP--IGLSYPPDWGERTMSLRPGDNTVLK 346 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcc--CCCceee--eccCcCCCCCCccccccCCCCceec
Confidence 46677888999999999999999999999999999999888643 1222222 22211100 001112 357899
Q ss_pred CCCEEEEEeeceeCcEEeceeeEEEecC
Q 021917 225 DGDIVNIDVTVYYKGVHGDLNETYFVGN 252 (305)
Q Consensus 225 ~GDiV~iDv~~~~~GY~~D~~RT~~vG~ 252 (305)
+|.++.|+.+.+..|+-.-+..|++|.+
T Consensus 347 ~GMv~tvEpgiy~~~~Gvried~v~VT~ 374 (391)
T TIGR02993 347 PGMTFHFMTGLWMEDWGLEITESILITE 374 (391)
T ss_pred CCCEEEEcceeEeCCCCeEEeeEEEECC
Confidence 9999999999998777668889999953
No 48
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=96.82 E-value=0.019 Score=52.03 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccC------CCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG------IPDSRKL 223 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg------~p~~r~L 223 (305)
..|++..++.++++.+.+.++||++-.||++.+.+.+.++|.... .+ +.+.-.+....++. .|+ .-++++|
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~-~~-~~~GHgiGl~~he~-~~~~g~~~~~~~~~~L 186 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRY-RT-FGYGHSFGVLSHYY-GREAGLELREDIDTVL 186 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcc-cc-cccCcccccccccC-CCccccccCCCCCCcc
Confidence 466788889999999999999999999999999999999885432 11 11111222222221 111 0135789
Q ss_pred CCCCEEEEEeeceeC----c-EEeceeeEEEecC
Q 021917 224 EDGDIVNIDVTVYYK----G-VHGDLNETYFVGN 252 (305)
Q Consensus 224 ~~GDiV~iDv~~~~~----G-Y~~D~~RT~~vG~ 252 (305)
++|.++.|+.+.+.. | .-..+..|++|.+
T Consensus 187 e~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~ 220 (228)
T cd01090 187 EPGMVVSMEPMIMLPEGQPGAGGYREHDILVINE 220 (228)
T ss_pred CCCCEEEECCEEeecccCCCCcEEEeeeEEEECC
Confidence 999999999998762 3 2334788888864
No 49
>PRK15173 peptidase; Provisional
Probab=96.81 E-value=0.016 Score=55.25 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--ecCCCccccCCCCCCCCCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIPDSRKLEDG 226 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~--ts~n~~~~Hg~p~~r~L~~G 226 (305)
+.+|++-.++.++++.+++.++||++-.||...+.+.+.+.|.......+.+. .+. .|.++.-.....++.+|++|
T Consensus 202 ~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GH--GiG~~lg~~E~P~i~~~~~~~Le~G 279 (323)
T PRK15173 202 EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGH--GNGVFLGLEESPFVSTHATESFTSG 279 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCC--cCCCCCCcCCCCCCCCCCCCccCCC
Confidence 34567778899999999999999999999999999999988853211111111 122 12222111111245789999
Q ss_pred CEEEEEeeceeCc-EEeceeeEEEecC
Q 021917 227 DIVNIDVTVYYKG-VHGDLNETYFVGN 252 (305)
Q Consensus 227 DiV~iDv~~~~~G-Y~~D~~RT~~vG~ 252 (305)
.++.|+.+.+..| +-.-+..|++|.+
T Consensus 280 MV~tiEPgiy~~g~ggvriEDtvlVTe 306 (323)
T PRK15173 280 MVLSLETPYYGYNLGSIMIEDMILINK 306 (323)
T ss_pred CEEEECCEEEcCCCcEEEEeeEEEEcC
Confidence 9999999887444 3356889999953
No 50
>PRK09795 aminopeptidase; Provisional
Probab=96.73 E-value=0.024 Score=54.64 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCC-CCCCC
Q 021917 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-DSRKL 223 (305)
Q Consensus 145 ~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p-~~r~L 223 (305)
+++-+.++++-+++.++.+.+.+.++||++-.||++.+.+.+.+.|.... +. +...-.+.....+. +.-.| ++.+|
T Consensus 236 ~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~-~~-h~~GHgiGl~~he~-p~i~~~~~~~l 312 (361)
T PRK09795 236 SAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDY-FG-HNTGHAIGIEVHED-PRFSPRDTTTL 312 (361)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcc-CC-CCCCccCCccccCC-CCcCCCCCCCc
Confidence 45545688899999999999999999999999999999999998875321 10 11111122222221 11112 35789
Q ss_pred CCCCEEEEEeeceeCcE-EeceeeEEEec
Q 021917 224 EDGDIVNIDVTVYYKGV-HGDLNETYFVG 251 (305)
Q Consensus 224 ~~GDiV~iDv~~~~~GY-~~D~~RT~~vG 251 (305)
++|.++.|+.+.+..|. -..+.-|++|.
T Consensus 313 ~~gmv~~iEpgiy~~~~~gvriEd~v~vt 341 (361)
T PRK09795 313 QPGMLLTVEPGIYLPGQGGVRIEDVVLVT 341 (361)
T ss_pred CCCCEEEECCEEEeCCCCEEEEeeEEEEC
Confidence 99999999999987553 35678888885
No 51
>PRK12897 methionine aminopeptidase; Reviewed
Probab=96.73 E-value=0.015 Score=53.12 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC--ccccCC-C-CCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE--VICHGI-P-DSRKLED 225 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~--~~~Hg~-p-~~r~L~~ 225 (305)
..|++.+++.++++.+++.++||++..|++..+.+.+.+.|.... .++.++. +..+..+ .+.+.. + +..+|++
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~-~~~~GHg--iGl~~hE~P~i~~~~~~~~~~~l~~ 194 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVA-RDFTGHG--IGKEIHEEPAIFHFGKQGQGPELQE 194 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccC-CCeEECc--cCCcccCCCccCCCCCCCCCCCcCC
Confidence 355666788999999999999999999999999999998886432 2222221 2222222 122211 2 3458999
Q ss_pred CCEEEEEeecee-----------------Cc-EEeceeeEEEecC
Q 021917 226 GDIVNIDVTVYY-----------------KG-VHGDLNETYFVGN 252 (305)
Q Consensus 226 GDiV~iDv~~~~-----------------~G-Y~~D~~RT~~vG~ 252 (305)
|.++.|..+.+. +| +-..+..|++|.+
T Consensus 195 Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~ 239 (248)
T PRK12897 195 GMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 (248)
T ss_pred CCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeC
Confidence 999999988872 44 6667888888864
No 52
>PRK08671 methionine aminopeptidase; Provisional
Probab=96.71 E-value=0.031 Score=52.55 Aligned_cols=95 Identities=26% Similarity=0.286 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCC--------CCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI--------PDSR 221 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~--------p~~r 221 (305)
..+.+.+.+.++++.+++.++||++..||.+.+.+.+.+.|..+. .|..+.. .|.+ ..|.. .++.
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~-~~~~GHg----iG~~--~~he~p~ip~~~~~~~~ 174 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI-RNLTGHG----LERY--ELHAGPSIPNYDEGGGV 174 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-CCCcccC----cCCC--cccCCCccCccCCCCCc
Confidence 456788888999999999999999999999999999999997763 2222211 1111 12221 2357
Q ss_pred CCCCCCEEEEEeece-eCcEEeceeeEEEec
Q 021917 222 KLEDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (305)
Q Consensus 222 ~L~~GDiV~iDv~~~-~~GY~~D~~RT~~vG 251 (305)
+|++|+++.|+..+. -.|+..|..+|-...
T Consensus 175 ~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~ 205 (291)
T PRK08671 175 KLEEGDVYAIEPFATDGEGKVVEGPEVEIYS 205 (291)
T ss_pred eeCCCCEEEEcceEECCCCeEecCCceEEEe
Confidence 899999999998766 578887888777664
No 53
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=96.69 E-value=0.019 Score=52.62 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCce----eeecCCCccccCCC-CCCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS----CCTSVNEVICHGIP-DSRKL 223 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~----v~ts~n~~~~Hg~p-~~r~L 223 (305)
+.+|++.+++.++.+++.+.++||++-.||.+.+.+.+.+.+..-.. .|++. +.....+.-..-.+ ++++|
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~~----~~~~~~GHgiGle~hE~~~~l~~~~~~~L 194 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELEP----NFTKNLGFGIGLEFRESSLIINAKNDRKL 194 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHHH----hCcCCcccccCcccccCccccCCCCCCCc
Confidence 45667888899999999999999999999999999888887521111 13322 22222231111112 35789
Q ss_pred CCCCEEEEEeece-e----------CcEEeceeeEEEecC
Q 021917 224 EDGDIVNIDVTVY-Y----------KGVHGDLNETYFVGN 252 (305)
Q Consensus 224 ~~GDiV~iDv~~~-~----------~GY~~D~~RT~~vG~ 252 (305)
++|.+++|..+.+ . +.|-.-++.|++|.+
T Consensus 195 ~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 195 KKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred CCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 9999999999987 3 257888999999964
No 54
>PRK14575 putative peptidase; Provisional
Probab=96.69 E-value=0.02 Score=56.27 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--ecCCC--ccccCCCCCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNE--VICHGIPDSRKLED 225 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~--ts~n~--~~~Hg~p~~r~L~~ 225 (305)
..|++.+++.++++.++++++||++-.||++.+.+.+.+.|.......+ +.-.+. .|..+ .+.+ -++++|++
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~lg~~e~P~i~~--~~~~~Le~ 361 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFLGLEESPFVST--HATESFTS 361 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcccCCCCCccCCCCCC--CCCCCcCC
Confidence 4567777888999999999999999999999999999888753211111 111122 12222 1111 24568999
Q ss_pred CCEEEEEeeceeCc-EEeceeeEEEecC
Q 021917 226 GDIVNIDVTVYYKG-VHGDLNETYFVGN 252 (305)
Q Consensus 226 GDiV~iDv~~~~~G-Y~~D~~RT~~vG~ 252 (305)
|.++.|+.+.+..| +-.-+..|++|.+
T Consensus 362 GMv~tiEpgiy~~g~gGvriEDtvlVT~ 389 (406)
T PRK14575 362 GMVLSLETPYYGYNLGSIMIEDMILINK 389 (406)
T ss_pred CCEEEECCeeecCCCcEEEEEeEEEEcC
Confidence 99999999988554 3357899999964
No 55
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=96.67 E-value=0.021 Score=51.79 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC----CCC------------CCCCCCCCCceeeecCCCcc
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG----GYP------------SPLNYHFFPKSCCTSVNEVI 213 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G----~~p------------splny~~fp~~v~ts~n~~~ 213 (305)
.+++...++.++++.+.+.++||++-.||.+.+.+.+.+.+ ..+ ..+..+.+.-.+..+..+.
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~- 182 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDV- 182 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccC-
Confidence 45667778899999999999999999999999988886653 211 1111112222232222221
Q ss_pred ccC--CC-CCCCCCCCCEEEEEeeceeCc-----------EEeceeeEEEecC
Q 021917 214 CHG--IP-DSRKLEDGDIVNIDVTVYYKG-----------VHGDLNETYFVGN 252 (305)
Q Consensus 214 ~Hg--~p-~~r~L~~GDiV~iDv~~~~~G-----------Y~~D~~RT~~vG~ 252 (305)
++. .+ ++.+|++|.++.|..+.+..| +-.-+..|++|.+
T Consensus 183 p~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~ 235 (243)
T cd01087 183 GGYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTE 235 (243)
T ss_pred ccccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEcC
Confidence 111 22 357899999999999988654 6667888998853
No 56
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.64 E-value=0.036 Score=52.14 Aligned_cols=95 Identities=24% Similarity=0.224 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccC--------CCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG--------IPDSR 221 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg--------~p~~r 221 (305)
..+...+++.++++.+++.++||++-.||++.+.+.+.+.|..|. .|..++. .|. ...|+ ..++.
T Consensus 101 ~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~-~~~~GHg----ig~--~~~h~~~~ip~~~~~~~~ 173 (291)
T cd01088 101 KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPI-RNLTGHS----IER--YRLHAGKSIPNVKGGEGT 173 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEe-ecCCccC----ccC--ccccCCCccCccCCCCCC
Confidence 456677889999999999999999999999999999999998762 2222211 111 11222 12356
Q ss_pred CCCCCCEEEEEeece-eCcEEeceeeEEEec
Q 021917 222 KLEDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (305)
Q Consensus 222 ~L~~GDiV~iDv~~~-~~GY~~D~~RT~~vG 251 (305)
+|++|+++.|+.... -.|+..+-.+|-...
T Consensus 174 ~le~gmV~aIEp~~s~G~G~v~~~~~~~iy~ 204 (291)
T cd01088 174 RLEEGDVYAIEPFATTGKGYVHDGPECSIYM 204 (291)
T ss_pred EeCCCCEEEEceeEECCCCeeecCCceEEEE
Confidence 899999999999765 467777766666664
No 57
>PRK12896 methionine aminopeptidase; Reviewed
Probab=96.56 E-value=0.034 Score=50.65 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC---ccccC-CC-CCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE---VICHG-IP-DSRKLE 224 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~---~~~Hg-~p-~~r~L~ 224 (305)
.++++...+.++++.+.+.++||++-.||.+.+.+.+.+.|.... .++.++. +.....+ .+.+. .+ ++.+|+
T Consensus 124 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~~~-~~~~GHg--iG~~~he~p~~~~~~~~~~~~~~le 200 (255)
T PRK12896 124 EAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVV-RDLTGHG--VGRSLHEEPSVILTYTDPLPNRLLR 200 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCcccCC--cCcccccCCCccccCCCCCCCCEec
Confidence 356677778889999999999999999999999999999886431 2222221 1111111 11111 13 356899
Q ss_pred CCCEEEEEeecee------------------CcEEeceeeEEEecC
Q 021917 225 DGDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (305)
Q Consensus 225 ~GDiV~iDv~~~~------------------~GY~~D~~RT~~vG~ 252 (305)
+|.++.|+.+.+. +++..-+..|++|.+
T Consensus 201 ~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~ 246 (255)
T PRK12896 201 PGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTR 246 (255)
T ss_pred CCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcC
Confidence 9999999987752 345666889999864
No 58
>PRK12318 methionine aminopeptidase; Provisional
Probab=96.46 E-value=0.034 Score=52.36 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--cccCCC-CCCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGIP-DSRKLEDG 226 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~--~~Hg~p-~~r~L~~G 226 (305)
.+|++..++.++++.+.+.++||++..||++.+.+.+.+.|.... ..+.++. +.....+. +.+..+ ++.+|++|
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~-~~~~GHg--IGl~~hE~P~i~~~~~~~~~~L~~G 235 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV-DQFVGHG--VGIKFHENPYVPHHRNSSKIPLAPG 235 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC-CCcccCC--cCccccCCCcccCcCCCCCCEeCCC
Confidence 456778889999999999999999999999999999999886431 1122221 22332221 122112 24679999
Q ss_pred CEEEEEeeceeC
Q 021917 227 DIVNIDVTVYYK 238 (305)
Q Consensus 227 DiV~iDv~~~~~ 238 (305)
.++.|+.+.+..
T Consensus 236 MV~~iEP~i~~~ 247 (291)
T PRK12318 236 MIFTIEPMINVG 247 (291)
T ss_pred CEEEECCEEEcC
Confidence 999999887754
No 59
>PRK14576 putative endopeptidase; Provisional
Probab=96.44 E-value=0.04 Score=54.18 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--ecCCCccccCCC-CCCCCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIP-DSRKLED 225 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~--ts~n~~~~Hg~p-~~r~L~~ 225 (305)
+..+++-+++.+++++++++++||++-.||+..+.+.+.+.|........ +.-.+. .|..+. +.-.+ ++.+|++
T Consensus 284 ~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHgiG~~l~~~e~-P~i~~~~~~~Le~ 360 (405)
T PRK14576 284 KLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGH--LGHGDGVFLGLEEV-PFVSTQATETFCP 360 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCCCCCCCCcCcC-CCcCCCCCCccCC
Confidence 34667778889999999999999999999999999999988853211111 111122 222221 11112 3578999
Q ss_pred CCEEEEEeeceeCc-EEeceeeEEEecC
Q 021917 226 GDIVNIDVTVYYKG-VHGDLNETYFVGN 252 (305)
Q Consensus 226 GDiV~iDv~~~~~G-Y~~D~~RT~~vG~ 252 (305)
|.++.++.+.+..| .-.-+..|++|.+
T Consensus 361 GMv~~vEp~~y~~g~ggvriEDtvlVTe 388 (405)
T PRK14576 361 GMVLSLETPYYGIGVGSIMLEDMILITD 388 (405)
T ss_pred CCEEEECCceeecCCCEEEEeeEEEECC
Confidence 99999997766544 3345788999953
No 60
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=96.37 E-value=0.035 Score=50.07 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCC-CCCCCCCceeeecCCCccccCCCCCCCCCCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psp-lny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GD 227 (305)
...+++.+.+.++++++++.++||++-.||+..+.+.+.+.|+.+-. +..|.+...+.++.+... -..+|++|.
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~~-----~~~~l~~gm 194 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKAK-----LVECVKHGL 194 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCcc-----chhhccCCc
Confidence 46778888899999999999999999999999999999999953311 111222222333322110 145799999
Q ss_pred EEEEEeeceeCc-EEeceeeEEEecC
Q 021917 228 IVNIDVTVYYKG-VHGDLNETYFVGN 252 (305)
Q Consensus 228 iV~iDv~~~~~G-Y~~D~~RT~~vG~ 252 (305)
++.+....+..| +-.-+..|+.|.+
T Consensus 195 vf~~ep~~~~~g~~~~~~~~Tv~vt~ 220 (228)
T cd01089 195 LFPYPVLYEKEGEVVAQFKLTVLLTP 220 (228)
T ss_pred ccccceeEccCCCeEEEEEEEEEEcC
Confidence 999999988766 7889999999964
No 61
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=96.30 E-value=0.027 Score=49.47 Aligned_cols=98 Identities=29% Similarity=0.334 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC-CCCCCCCCCCceeeecCCCccccCC-C-CCCCCCCCC
Q 021917 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCCTSVNEVICHGI-P-DSRKLEDGD 227 (305)
Q Consensus 151 mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~-psplny~~fp~~v~ts~n~~~~Hg~-p-~~r~L~~GD 227 (305)
.|++.+.+.++++.+++.++||+|..||.+.+.+.+.+.|.. +.+. .+.-++.....+..+.-. + ++.+|++|-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~---~~GH~iG~~~~~~~P~i~~~~~~~~l~~gm 180 (207)
T PF00557_consen 104 QRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPH---GLGHGIGLEFHEPGPNIARPGDDTVLEPGM 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTS---SSEEEESSSSSEEEEEESSTTTSSB--TTB
T ss_pred ccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeee---cccccccccccccceeeecccccceecCCC
Confidence 778888889999999999999999999999999999999861 1111 111112211111112211 2 567899999
Q ss_pred EEEEEeece-eCcE-EeceeeEEEec
Q 021917 228 IVNIDVTVY-YKGV-HGDLNETYFVG 251 (305)
Q Consensus 228 iV~iDv~~~-~~GY-~~D~~RT~~vG 251 (305)
++.|+.+.. ..|. -.-+..|++|.
T Consensus 181 v~~iep~~~~~~~~~g~~~ed~v~Vt 206 (207)
T PF00557_consen 181 VFAIEPGLYFIPGWGGVRFEDTVLVT 206 (207)
T ss_dssp EEEEEEEEEEETTSEEEEEBEEEEEE
T ss_pred ceeEeeeEEccCCCcEEEEEEEEEEC
Confidence 999999876 3343 66667777663
No 62
>PRK07281 methionine aminopeptidase; Reviewed
Probab=96.26 E-value=0.045 Score=51.50 Aligned_cols=99 Identities=10% Similarity=0.150 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--cccC-CC-CCCCCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-IP-DSRKLED 225 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~--~~Hg-~p-~~r~L~~ 225 (305)
..|++.+++.++++.+++.++||++-.||++.+.+.+.++|.-. ..++.++. +.....+. +.+. .+ ++.+|++
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~-~~~~~GHG--IGl~~hE~P~i~~~~~~~~~~~Le~ 225 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV-VRDLVGHG--VGPTMHEEPMVPNYGTAGRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-CCCeeeee--CCCccCCCCcCCCcccCCCCCEECC
Confidence 46788889999999999999999999999999999988877532 11211111 22222221 1221 12 3467999
Q ss_pred CCEEEEEeeceeC-------------------cEEeceeeEEEec
Q 021917 226 GDIVNIDVTVYYK-------------------GVHGDLNETYFVG 251 (305)
Q Consensus 226 GDiV~iDv~~~~~-------------------GY~~D~~RT~~vG 251 (305)
|.++.|..+.+.. |.-..+.-|++|.
T Consensus 226 GMV~tiEPgiy~~~~~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT 270 (286)
T PRK07281 226 GMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVIT 270 (286)
T ss_pred CCEEEECCeeEcCCcceecccCCCceEEecCCCcEEEeccEEEEe
Confidence 9999999998752 2335677888885
No 63
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=96.17 E-value=0.046 Score=53.66 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCC-CCCCCCCceeeecCCCccccCCC------CCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIP------DSRK 222 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psp-lny~~fp~~v~ts~n~~~~Hg~p------~~r~ 222 (305)
..+.+...+.++++.+++.++||++-.||...+.+.+.+.|..+.. +..|+....+--|...++.+..+ ++..
T Consensus 139 ~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~ 218 (389)
T TIGR00495 139 RKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAE 218 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCE
Confidence 4566777888999999999999999999999999999999987642 22334433333222333444332 1346
Q ss_pred CCCCCEEEEEeece-eCcEEecee-eEEEe
Q 021917 223 LEDGDIVNIDVTVY-YKGVHGDLN-ETYFV 250 (305)
Q Consensus 223 L~~GDiV~iDv~~~-~~GY~~D~~-RT~~v 250 (305)
|++|+++.||+.+. -.|+.-+.. ||-++
T Consensus 219 le~gev~aIEp~vs~G~g~v~~~~~~~tiy 248 (389)
T TIGR00495 219 FEENEVYAVDILVSTGEGKAKDADQRTTIY 248 (389)
T ss_pred ecCCCEEEEeeeecCCCceEEECCCeeEEE
Confidence 99999999999987 566666655 44444
No 64
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=96.03 E-value=0.063 Score=50.64 Aligned_cols=93 Identities=28% Similarity=0.326 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccC--------CCCCCC
Q 021917 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG--------IPDSRK 222 (305)
Q Consensus 151 mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg--------~p~~r~ 222 (305)
.+...+.+.++++.+.+.++||++-.||++.+.+.+.+.|..|. .|+.++. + | ....|+ ..++.+
T Consensus 106 ~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i-~~~~GHg--i--g--~~~~h~g~~ip~i~~~~~~~ 178 (295)
T TIGR00501 106 YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPI-SNLTGHS--M--A--PYRLHGGKSIPNVKERDTTK 178 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCCCCcc--e--e--cccccCCCccCeecCCCCCE
Confidence 47788888999999999999999999999999999999998763 3333332 1 1 011222 123568
Q ss_pred CCCCCEEEEEeece-eCcEEeceeeEEEe
Q 021917 223 LEDGDIVNIDVTVY-YKGVHGDLNETYFV 250 (305)
Q Consensus 223 L~~GDiV~iDv~~~-~~GY~~D~~RT~~v 250 (305)
|++|+++.|+.... -.|+..|..+|-..
T Consensus 179 le~GmV~aIEP~~~~G~G~v~~~~~~~iy 207 (295)
T TIGR00501 179 LEEGDVVAIEPFATDGVGYVTDGGEVSIY 207 (295)
T ss_pred eCCCCEEEEceeEECCcCeEecCCCeEEE
Confidence 99999999998755 46888887776554
No 65
>PLN03158 methionine aminopeptidase; Provisional
Probab=95.99 E-value=0.081 Score=52.07 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC--ccccCCCC--CCCCCCC
Q 021917 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE--VICHGIPD--SRKLEDG 226 (305)
Q Consensus 151 mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~--~~~Hg~p~--~r~L~~G 226 (305)
.|++.+.+.++++.++++++||++-.||.+++.+.+.+.|.... .+|.+.. |.....+ .+.|+..+ ..+|++|
T Consensus 252 ~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v-~~~~GHG--IG~~~He~P~i~~~~~~~~~~~l~~G 328 (396)
T PLN03158 252 SRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVV-KSYCGHG--IGELFHCAPNIPHYARNKAVGVMKAG 328 (396)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCcc-CCccCCc--cccccCCCCCCCcccCCCCCCEecCC
Confidence 46677888999999999999999999999999999998876431 1222221 2211111 23443322 2589999
Q ss_pred CEEEEEeecee
Q 021917 227 DIVNIDVTVYY 237 (305)
Q Consensus 227 DiV~iDv~~~~ 237 (305)
.++.|+-..+.
T Consensus 329 MVfTIEP~i~~ 339 (396)
T PLN03158 329 QVFTIEPMINA 339 (396)
T ss_pred cEEEECCeecc
Confidence 99999988764
No 66
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.56 E-value=0.16 Score=49.45 Aligned_cols=97 Identities=28% Similarity=0.342 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCC-CccccCCC------CCCC
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN-EVICHGIP------DSRK 222 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n-~~~~Hg~p------~~r~ 222 (305)
.+|+.-.++.++.+++.++++||+|-.|++....+.+.+.|.... |.....=|+. ..-.|-.| ++.+
T Consensus 263 ~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~------~~h~~GHgvG~~l~vhE~p~~~~~~~~~~ 336 (384)
T COG0006 263 EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLY------FLHGTGHGVGFVLDVHEHPQYLSPGSDTT 336 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCccc------ccCCccccCCCCcccCcCccccCCCCCcc
Confidence 345677789999999999999999999999999999999654322 1111111111 01122222 4668
Q ss_pred CCCCCEEEEEeecee-CcEEeceeeEEEecC
Q 021917 223 LEDGDIVNIDVTVYY-KGVHGDLNETYFVGN 252 (305)
Q Consensus 223 L~~GDiV~iDv~~~~-~GY~~D~~RT~~vG~ 252 (305)
|++|-+|.++.+.++ +++-..+..+++|.+
T Consensus 337 L~~GMv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 337 LEPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred ccCCcEEEeccccccCCCceEEEEEEEEEcC
Confidence 999999999999885 558889999999975
No 67
>PRK10879 proline aminopeptidase P II; Provisional
Probab=95.21 E-value=0.23 Score=49.41 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----HcCCCC------------CCCCCCCCCceeeecCCCccc
Q 021917 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYP------------SPLNYHFFPKSCCTSVNEVIC 214 (305)
Q Consensus 151 mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~----~~G~~p------------splny~~fp~~v~ts~n~~~~ 214 (305)
.|++..++.++++++++.++||++-.+|...+.+.+. +.|.-+ ..+-.|+..-.+...+.+. +
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~-~ 362 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDV-G 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcC-C
Confidence 4566778888999999999999999999988776543 333211 0111111111122222221 1
Q ss_pred cCCC-CCCCCCCCCEEEEEeeceeC----------cEEeceeeEEEecC
Q 021917 215 HGIP-DSRKLEDGDIVNIDVTVYYK----------GVHGDLNETYFVGN 252 (305)
Q Consensus 215 Hg~p-~~r~L~~GDiV~iDv~~~~~----------GY~~D~~RT~~vG~ 252 (305)
+..+ ++++|++|-++.|+.+.|+. |+-..+.-|++|.+
T Consensus 363 ~~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~ 411 (438)
T PRK10879 363 VYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITE 411 (438)
T ss_pred CcCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEECC
Confidence 1112 35789999999999998863 46677889999963
No 68
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=95.11 E-value=0.18 Score=50.68 Aligned_cols=99 Identities=14% Similarity=0.235 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCC-----ceeeecCCCccccC---CC---
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFP-----KSCCTSVNEVICHG---IP--- 218 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp-----~~v~ts~n~~~~Hg---~p--- 218 (305)
..+....++.+|++.+++.++||++-.||++.+.+.+.+.|.. ++.-.|| ..+.=|..-...|+ +|
T Consensus 264 ~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e---~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~ 340 (470)
T PTZ00053 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVE---IKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVK 340 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc---ccCcccccccccCCcccCCCCccccCCCcCCeeC
Confidence 4667788899999999999999999999999999999999852 0000010 01111111112343 33
Q ss_pred --CCCCCCCCCEEEEEeece-eCcEEeceeeEEEec
Q 021917 219 --DSRKLEDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (305)
Q Consensus 219 --~~r~L~~GDiV~iDv~~~-~~GY~~D~~RT~~vG 251 (305)
+..+|++|+++.|+..+. -.||..|-.+|-...
T Consensus 341 ~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY~ 376 (470)
T PTZ00053 341 GGENTRMEEGELFAIETFASTGRGYVNEDLECSHYM 376 (470)
T ss_pred CCCCCEecCCCEEEEcceeeCCCCeEecCCCceeee
Confidence 346799999999999877 688888866666554
No 69
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.38 Score=44.58 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCC-CCC-CCCCCC
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI-PDS-RKLEDG 226 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~-p~~-r~L~~G 226 (305)
+..++.++.++++|..+.+.++||.+..||.+++...+.++|..+. -||.+..---..=..-.++|+. +.. .+|++|
T Consensus 120 ~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~~vV-r~~~GHgig~~~He~p~ip~y~~~~~~~~l~~G 198 (255)
T COG0024 120 EDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVV-RNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEG 198 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCEEe-ecccCCccCcccCCCCeeccccCCCCCcccCCC
Confidence 4667788889999999999999999999999999999998886543 2222211000000112345532 222 479999
Q ss_pred CEEEEEeeceeC-cEEecee
Q 021917 227 DIVNIDVTVYYK-GVHGDLN 245 (305)
Q Consensus 227 DiV~iDv~~~~~-GY~~D~~ 245 (305)
+++.|+--+.-+ ++.....
T Consensus 199 mv~aIEPmi~~G~~~~~~~~ 218 (255)
T COG0024 199 MVFAIEPMINTGSGEVVEGP 218 (255)
T ss_pred CEEEEeeEEEcCCCceEecC
Confidence 999998877644 4443333
No 70
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=93.43 E-value=0.034 Score=34.45 Aligned_cols=28 Identities=39% Similarity=1.195 Sum_probs=21.8
Q ss_pred ccccccCCccccccchhhhcCCCCCCCcccChhhhh
Q 021917 13 LSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFK 48 (305)
Q Consensus 13 ~~c~~c~~~~~l~cp~c~~~~~~~~~~~fc~q~cfk 48 (305)
..|..|++++.-.||.|.. .+||-+|+|
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~--------~~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGA--------RYCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT----------EESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCC--------ceeCcEeEC
Confidence 4688899988899998863 399999987
No 71
>PRK13607 proline dipeptidase; Provisional
Probab=92.27 E-value=1.3 Score=44.18 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----HcCCCCC-------------CCCCCCCCceeeecCCCccc
Q 021917 152 RETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPS-------------PLNYHFFPKSCCTSVNEVIC 214 (305)
Q Consensus 152 R~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~----~~G~~ps-------------plny~~fp~~v~ts~n~~~~ 214 (305)
++.-.++.++.+++++.++||++-.||...+++.+. +.|.-.. .+-.|+..-.+...+.+.-.
T Consensus 271 ~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~ 350 (443)
T PRK13607 271 AALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAG 350 (443)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCC
Confidence 366778899999999999999999999988876553 3433210 01011111123333333210
Q ss_pred c----------------CCCCCCCCCCCCEEEEEeeceeCc
Q 021917 215 H----------------GIPDSRKLEDGDIVNIDVTVYYKG 239 (305)
Q Consensus 215 H----------------g~p~~r~L~~GDiV~iDv~~~~~G 239 (305)
. ..-+.++|++|.++.|+-+.|+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~ 391 (443)
T PRK13607 351 FMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFID 391 (443)
T ss_pred cccccccccccccccccccccCCcCCCCcEEEECCeeeeCh
Confidence 0 011357899999999999998865
No 72
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=91.97 E-value=3.6 Score=37.10 Aligned_cols=96 Identities=17% Similarity=0.091 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--ecCCCc--cccCCCCCCCCCCC
Q 021917 152 RETCRIAREVLDAAARMI-RPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEV--ICHGIPDSRKLEDG 226 (305)
Q Consensus 152 R~A~~ia~~~l~~~~~~i-~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~--ts~n~~--~~Hg~p~~r~L~~G 226 (305)
|++..++.++...+.+.+ +||++-.+|++.+.+.+.+.|.+-.. ..++ .+. ....+. +.+...++++|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~h--~~GH--gIG~~l~~hE~P~i~~~~~~~~~L~~G 189 (224)
T cd01085 114 KRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGH--GTGH--GVGSFLNVHEGPQSISPAPNNVPLKAG 189 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCC--CCCC--CCCCCCcCCCCCCcCCcCCCCCCcCCC
Confidence 344445566666776666 59999999999999998887753100 0111 122 111221 11111235789999
Q ss_pred CEEEEEeeceeC-cEEeceeeEEEec
Q 021917 227 DIVNIDVTVYYK-GVHGDLNETYFVG 251 (305)
Q Consensus 227 DiV~iDv~~~~~-GY~~D~~RT~~vG 251 (305)
.++.|+.+.+.. .+-..+..|++|.
T Consensus 190 mvftiEP~iy~~g~~gvried~v~Vt 215 (224)
T cd01085 190 MILSNEPGYYKEGKYGIRIENLVLVV 215 (224)
T ss_pred CEEEECCEeEeCCCeEEEeeEEEEEe
Confidence 999999999864 4556788899885
No 73
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=90.36 E-value=0.17 Score=36.40 Aligned_cols=35 Identities=23% Similarity=0.633 Sum_probs=25.7
Q ss_pred cccchhhhcCCCCCCCcccChhhhhhchhHHHHHhhh
Q 021917 24 LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLK 60 (305)
Q Consensus 24 l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h~~ 60 (305)
..||.|.+ .||. +.-|||++|-+..++.+|+..+.
T Consensus 4 kHC~~CG~-~Ip~-~~~fCS~~C~~~~~k~qk~~~~~ 38 (59)
T PF09889_consen 4 KHCPVCGK-PIPP-DESFCSPKCREEYRKRQKRMRKT 38 (59)
T ss_pred CcCCcCCC-cCCc-chhhhCHHHHHHHHHHHHHHHHH
Confidence 34666653 3433 57799999999999999987753
No 74
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.69 Score=43.70 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCC
Q 021917 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (305)
Q Consensus 256 e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~ 297 (305)
.++++.+.++|++++|-.++|||++..||++++.+.+-+.|.
T Consensus 124 ~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~ 165 (369)
T KOG2738|consen 124 GMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGA 165 (369)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCC
Confidence 367777888999999999999999999999999988777654
No 75
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=86.55 E-value=0.36 Score=34.99 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=21.0
Q ss_pred cccccchhhhcCC---CCCCCcccChhhhhhchhHH
Q 021917 22 AHLQCPKCMELKL---PREGAAFCTQDCFKASWTSH 54 (305)
Q Consensus 22 ~~l~cp~c~~~~~---~~~~~~fc~q~cfk~~w~~h 54 (305)
.+..||+|.|... ......|||+-|-.-+-..+
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W 40 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGEW 40 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCcccHHHHhhhHHHH
Confidence 3467888887642 11256799999977653333
No 76
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.44 E-value=0.52 Score=34.26 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=20.9
Q ss_pred ccccccccccCCccc--cccchhhhcCCCCCCCcccChhhhhhchhH
Q 021917 9 ETTSLSCVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCFKASWTS 53 (305)
Q Consensus 9 ~~~~~~c~~c~~~~~--l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~ 53 (305)
.+.++.|..|||+.. -+-+ ...|||+-|.-=+-..
T Consensus 4 ~~~~v~CP~Cgkpv~w~~~s~----------frPFCSkRCklIDLg~ 40 (65)
T COG3024 4 LRITVPCPTCGKPVVWGEESP----------FRPFCSKRCKLIDLGE 40 (65)
T ss_pred ccccccCCCCCCcccccccCC----------cCcchhHhhhhcchhh
Confidence 344556666666554 2222 5779999997655333
No 77
>PRK01343 zinc-binding protein; Provisional
Probab=84.12 E-value=0.54 Score=33.51 Aligned_cols=28 Identities=25% Similarity=0.650 Sum_probs=18.4
Q ss_pred cccchhhhcCCCCCCCcccChhhhhhchh
Q 021917 24 LQCPKCMELKLPREGAAFCTQDCFKASWT 52 (305)
Q Consensus 24 l~cp~c~~~~~~~~~~~fc~q~cfk~~w~ 52 (305)
..||+|.|.... ....|||+-|-.-+-.
T Consensus 10 ~~CP~C~k~~~~-~~rPFCS~RC~~iDLg 37 (57)
T PRK01343 10 RPCPECGKPSTR-EAYPFCSERCRDIDLN 37 (57)
T ss_pred CcCCCCCCcCcC-CCCcccCHHHhhhhHH
Confidence 456666665442 3567999999776633
No 78
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=80.13 E-value=0.52 Score=33.66 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=12.7
Q ss_pred ccchhhhcCCC---CCCCcccChhhhhhc
Q 021917 25 QCPKCMELKLP---REGAAFCTQDCFKAS 50 (305)
Q Consensus 25 ~cp~c~~~~~~---~~~~~fc~q~cfk~~ 50 (305)
.||+|.|.-.. .....|||+-|-.-+
T Consensus 4 ~CP~C~k~~~~~~~n~~rPFCS~RCk~iD 32 (57)
T PF03884_consen 4 KCPICGKPVEWSPENPFRPFCSERCKLID 32 (57)
T ss_dssp E-TTT--EEE-SSSSS--SSSSHHHHHHH
T ss_pred cCCCCCCeecccCCCCcCCcccHhhcccC
Confidence 46666655432 125669999996544
No 79
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=76.72 E-value=11 Score=40.02 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCC----C-ccccCCCCCCCCCC
Q 021917 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN----E-VICHGIPDSRKLED 225 (305)
Q Consensus 151 mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n----~-~~~Hg~p~~r~L~~ 225 (305)
|.++-..--.+.+++..+++||.+-.+|...+...+.+.+-.-.+ .|++.+.+|.. + .+.-..-.++.|+.
T Consensus 259 mq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~----~~~k~lG~~iGlEFREssl~inaKnd~~lk~ 334 (960)
T KOG1189|consen 259 MQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVP----NFTKNLGFGIGLEFRESSLVINAKNDRVLKK 334 (960)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhh----hhhhhcccccceeeecccccccccchhhhcc
Confidence 455666666777888889999999999999999999888754332 35555444432 1 11112235689999
Q ss_pred CCEEEEEeece-------eCcEEeceeeEEEecC
Q 021917 226 GDIVNIDVTVY-------YKGVHGDLNETYFVGN 252 (305)
Q Consensus 226 GDiV~iDv~~~-------~~GY~~D~~RT~~vG~ 252 (305)
|.+++|.++.. .+-|.-=++-|+.||+
T Consensus 335 gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e 368 (960)
T KOG1189|consen 335 GMVFNISLGFSNLTNPESKNSYALLLSDTVLVGE 368 (960)
T ss_pred CcEEEEeeccccccCcccccchhhhccceeeecC
Confidence 99999998854 2447777899999985
No 80
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=72.90 E-value=0.97 Score=30.46 Aligned_cols=37 Identities=30% Similarity=0.672 Sum_probs=26.9
Q ss_pred cccccCCccc---cccchhhhcCCCCCCCcccChhhhhhchhHHHHHh
Q 021917 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (305)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h 58 (305)
.|.+|+++.. .+|-.|.+..| -++||...+..|+.-|
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dL--------C~~Cf~~~~~~H~~~H 41 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDL--------CSSCYAKGKKGHPPDH 41 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcC--------HHHHHCcCcCCCCCCC
Confidence 5888998766 67888875443 5899998876666555
No 81
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.18 E-value=1.4 Score=44.59 Aligned_cols=38 Identities=24% Similarity=0.828 Sum_probs=30.9
Q ss_pred ccccCCccccccchhhhcCCCCCCCcccChhhhhhchhHHHHHhhhh
Q 021917 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKA 61 (305)
Q Consensus 15 c~~c~~~~~l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h~~~ 61 (305)
|..|.++|-+-| |- ..-|||-+|...+|++|++..+..
T Consensus 530 C~nC~~EAiy~C--CW-------NTSYCsveCQQ~HW~~H~ksCrrk 567 (588)
T KOG3612|consen 530 CYNCLDEAIYHC--CW-------NTSYCSVECQQGHWPEHRKSCRRK 567 (588)
T ss_pred HHhhhHHHHHHh--hc-------cccccCcchhhccchhHhhhhccc
Confidence 888888888665 32 345899999999999999988654
No 82
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=71.13 E-value=1.6 Score=36.70 Aligned_cols=29 Identities=38% Similarity=1.068 Sum_probs=22.5
Q ss_pred ccccccCC-ccccccchhhhcCCCCCCCcccChhhhhh
Q 021917 13 LSCVRCGK-PAHLQCPKCMELKLPREGAAFCTQDCFKA 49 (305)
Q Consensus 13 ~~c~~c~~-~~~l~cp~c~~~~~~~~~~~fc~q~cfk~ 49 (305)
.+|.-|.+ +.+-+||.|. . .|||-.|||-
T Consensus 6 ~tC~ic~e~~~KYKCpkC~---v-----PYCSl~CfKi 35 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCS---V-----PYCSLPCFKI 35 (157)
T ss_pred eeehhhhcchhhccCCCCC---C-----ccccchhhhh
Confidence 45777887 5579999996 3 3999999863
No 83
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=68.82 E-value=2 Score=30.10 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=7.7
Q ss_pred CcccChhhh
Q 021917 39 AAFCTQDCF 47 (305)
Q Consensus 39 ~~fc~q~cf 47 (305)
=|||||+|-
T Consensus 28 YYFcse~~~ 36 (53)
T COG3350 28 YYFCSEECK 36 (53)
T ss_pred EEEeCHHHH
Confidence 589999993
No 84
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=68.50 E-value=18 Score=27.07 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=32.7
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC-ccccCCCCCCCCCCCCEEEE
Q 021917 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE-VICHGIPDSRKLEDGDIVNI 231 (305)
Q Consensus 169 i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~-~~~Hg~p~~r~L~~GDiV~i 231 (305)
++.|.|-.++...+|..+.++=.+. .-.|.+. ....-.+-+.+|++||+|.|
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~A-----------~v~g~s~~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKYA-----------LVWGSSVKHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCee-----------EEeccCCcCCCeECCCCCEecCCCEEEE
Confidence 4669999999999998777652221 1111111 11223455678999999986
No 85
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=66.26 E-value=5.7 Score=28.14 Aligned_cols=37 Identities=22% Similarity=0.842 Sum_probs=28.7
Q ss_pred ccccCC----ccccccchhhhcCCCCCCCcccChhhhhhchhHHHHHh
Q 021917 15 CVRCGK----PAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (305)
Q Consensus 15 c~~c~~----~~~l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h 58 (305)
|.-|.+ ...+.||.| || .++||.+=.+.+...|+.+-
T Consensus 2 Cpv~~~~~~~~v~~~Cp~c---Gi----pthcS~ehw~~D~e~H~~~c 42 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDC---GI----PTHCSEEHWEDDYEEHRQLC 42 (55)
T ss_pred CCCCccccccccCCcCCCC---CC----cCccCHHHHHHhHHHHHHHH
Confidence 666777 666889977 56 46999998888888888755
No 86
>PRK04023 DNA polymerase II large subunit; Validated
Probab=65.66 E-value=3.7 Score=44.75 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=25.4
Q ss_pred CCCccccccccccccCCccc-cccchhhhcCCCCCCCcccCh
Q 021917 4 GSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (305)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~q 44 (305)
|....+...+.|..||+.+. .+||.|-+.-- ..+||..
T Consensus 618 g~~eVEVg~RfCpsCG~~t~~frCP~CG~~Te---~i~fCP~ 656 (1121)
T PRK04023 618 GTIEVEIGRRKCPSCGKETFYRRCPFCGTHTE---PVYRCPR 656 (1121)
T ss_pred CceeecccCccCCCCCCcCCcccCCCCCCCCC---cceeCcc
Confidence 44445556688999998866 88888876522 3556654
No 87
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=64.10 E-value=4.3 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=17.5
Q ss_pred ccccccCCccccccc-hhhhcCCCCCCCcccChhhhhh
Q 021917 13 LSCVRCGKPAHLQCP-KCMELKLPREGAAFCTQDCFKA 49 (305)
Q Consensus 13 ~~c~~c~~~~~l~cp-~c~~~~~~~~~~~fc~q~cfk~ 49 (305)
..|..|++.....=- .-+..+ .....|||+.|...
T Consensus 7 ~~C~~C~~~~~~~~~~~~~~~~--g~~~~FCS~~C~~~ 42 (43)
T PF06467_consen 7 KTCSYCKKYIPNKPTMIEVQYD--GKMKQFCSQSCLSS 42 (43)
T ss_dssp EE-TTT--EEECCC----EE-T--TTTSCCSSHHHHHH
T ss_pred CcCcccCCcccCCCcccccccc--CcccChhCHHHHhh
Confidence 468888886652221 122222 22568999999864
No 88
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=63.14 E-value=3.1 Score=29.14 Aligned_cols=20 Identities=20% Similarity=0.703 Sum_probs=15.0
Q ss_pred hcCCCCCCCcccChhhhhhc
Q 021917 31 ELKLPREGAAFCTQDCFKAS 50 (305)
Q Consensus 31 ~~~~~~~~~~fc~q~cfk~~ 50 (305)
+..|.+++.||||+.|-+..
T Consensus 20 ~~Ai~~dGk~YCS~aCA~gH 39 (52)
T PF02069_consen 20 EEAIQKDGKYYCSEACANGH 39 (52)
T ss_dssp TTSEESSS-EESSHHHHHTS
T ss_pred hHhHHhCCEeeecHHHhccC
Confidence 45666778999999998774
No 89
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.68 E-value=5.4 Score=23.80 Aligned_cols=17 Identities=35% Similarity=0.995 Sum_probs=12.4
Q ss_pred cccccCCccc---cccchhh
Q 021917 14 SCVRCGKPAH---LQCPKCM 30 (305)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~ 30 (305)
.|..|++... ..||.|-
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCG 21 (26)
T ss_pred cCCCCcCCchhhcCcCCCCC
Confidence 5888988766 6677663
No 90
>PRK01490 tig trigger factor; Provisional
Probab=57.33 E-value=38 Score=33.44 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCEEEEEeeceeCcEEec----eeeEE
Q 021917 173 VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGD----LNETY 248 (305)
Q Consensus 173 vTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDiV~iDv~~~~~GY~~D----~~RT~ 248 (305)
+|+.+|+..+.+....++-+ .+.+++++.||.|+||+....+|=.-+ -..+|
T Consensus 132 vtde~vd~~i~~l~~~~a~~------------------------~~~~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~~ 187 (435)
T PRK01490 132 VTDEDVDEELERLRKQFATL------------------------VPVERPAENGDRVTIDFVGSIDGEEFEGGKAEDFSL 187 (435)
T ss_pred CCHHHHHHHHHHHHHhCCcc------------------------ccccccCCCCCEEEEEEEEEECCEECcCCCCCceEE
Confidence 57777887777666655432 123467899999999999988774432 23577
Q ss_pred EecC
Q 021917 249 FVGN 252 (305)
Q Consensus 249 ~vG~ 252 (305)
.+|.
T Consensus 188 ~lg~ 191 (435)
T PRK01490 188 ELGS 191 (435)
T ss_pred EEcC
Confidence 7774
No 91
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=55.55 E-value=60 Score=31.72 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCC-CCCCCCCCCEEEEEeeceeCcEEece----ee
Q 021917 172 GVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDL----NE 246 (305)
Q Consensus 172 GvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p-~~r~L~~GDiV~iDv~~~~~GY~~D~----~R 246 (305)
-+|+.+|++.+.....+.+-+- + ++++++.||.|.||+..+.+|=..+- ..
T Consensus 119 ~vtde~vd~~i~~l~~~~a~~~------------------------~~~~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~~ 174 (408)
T TIGR00115 119 EVTDEDVDEELEKLREQNATLV------------------------PVERRAAEKGDRVTIDFEGFIDGEAFEGGKAENF 174 (408)
T ss_pred CCCHHHHHHHHHHHHHhCCccc------------------------cccccccCCCCEEEEEEEEEECCEECcCCCCCCe
Confidence 3588888888887777665431 2 23578999999999998877754443 34
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHcCCC
Q 021917 247 TYFVGNADEASRQLVQCTYECLEKAISIVKPG 278 (305)
Q Consensus 247 T~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG 278 (305)
+|.+|.-. +...++.++--++.|
T Consensus 175 ~~~lg~~~---------~~~~~ee~L~G~k~G 197 (408)
T TIGR00115 175 SLELGSGQ---------FIPGFEEQLVGMKAG 197 (408)
T ss_pred EEEECCCC---------cchhHHHHhCCCCCC
Confidence 77777411 122445555555665
No 92
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=54.79 E-value=4.1 Score=27.97 Aligned_cols=39 Identities=33% Similarity=0.671 Sum_probs=27.4
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCCcccChhhhhhchhHHHHHhh
Q 021917 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (305)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h~ 59 (305)
.|.+|++ ++. .+|..|.. +.|=--|+||...= .||..|.
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~------~d~DlC~~C~~~~~-~H~~~H~ 44 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDD------GDFDLCQDCVVKGE-SHQEDHW 44 (48)
T ss_pred CCCCCCCCccccceEECCCCCC------CCCccCHHHHhCcC-CCCCCCc
Confidence 4888998 666 78888874 13334579998764 6776663
No 93
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=54.41 E-value=7.5 Score=22.91 Aligned_cols=19 Identities=32% Similarity=0.880 Sum_probs=10.6
Q ss_pred cccccccCCccc---cccchhh
Q 021917 12 SLSCVRCGKPAH---LQCPKCM 30 (305)
Q Consensus 12 ~~~c~~c~~~~~---l~cp~c~ 30 (305)
...|..||++.. .-||.|-
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG 23 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCG 23 (26)
T ss_pred cCCCcccCCcCCcccccChhhC
Confidence 345666776433 5566553
No 94
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=54.12 E-value=18 Score=27.30 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=37.2
Q ss_pred CCCCCCCEEEEEeecee-CcEEecee------eEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q 021917 221 RKLEDGDIVNIDVTVYY-KGVHGDLN------ETYFVGNADEASRQLVQCTYECLEKAISIVKPGV 279 (305)
Q Consensus 221 r~L~~GDiV~iDv~~~~-~GY~~D~~------RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~ 279 (305)
+..++||.|.|++..+. +|-.-|-+ .+|.+|.- ....+++.++..+++|-
T Consensus 3 ~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~---------~~i~g~e~al~~m~~Ge 59 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSG---------QVIPGLEEALIGMKVGE 59 (94)
T ss_dssp SSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSS---------SSSHHHHHHHTTSBTTE
T ss_pred ccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccC---------ccccchhhhcccccCCC
Confidence 55789999999999986 78766666 67777741 13337788888888884
No 95
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=52.06 E-value=3.8 Score=28.00 Aligned_cols=37 Identities=30% Similarity=0.771 Sum_probs=24.5
Q ss_pred cccccCCccc----cccchhhhcCCCCCCCcccChhhhhhch--hHHHHHh
Q 021917 14 SCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (305)
Q Consensus 14 ~c~~c~~~~~----l~cp~c~~~~~~~~~~~fc~q~cfk~~w--~~hk~~h 58 (305)
.|.+|.++.. .+|..|.+..| -++||...= ..|+.-|
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dL--------C~~Cf~~g~~~~~H~~~H 44 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDL--------CLECFSAGAEIGKHRNDH 44 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcch--------hHHhhhCcCCCCCCCCCC
Confidence 4888988555 77888875443 578998762 2454444
No 96
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.79 E-value=2.3 Score=35.17 Aligned_cols=20 Identities=35% Similarity=0.931 Sum_probs=17.2
Q ss_pred cccccccCCccccccchhhh
Q 021917 12 SLSCVRCGKPAHLQCPKCME 31 (305)
Q Consensus 12 ~~~c~~c~~~~~l~cp~c~~ 31 (305)
...|+-||+.+-+|||.|..
T Consensus 28 eafcskcgeati~qcp~csa 47 (160)
T COG4306 28 EAFCSKCGEATITQCPICSA 47 (160)
T ss_pred HHHHhhhchHHHhcCCccCC
Confidence 35699999998899999975
No 97
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=51.49 E-value=5 Score=26.74 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=23.6
Q ss_pred cccccCCccc---cccchhhhcCCCCCCCcccChhhhhhchhHHHHHh
Q 021917 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (305)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h 58 (305)
.|.+|+++.. .+|..|.. |.--++||... .| ..|
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d--------~dLC~~C~~~~--~H-~~H 38 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPD--------YDLCESCEAKG--VH-PEH 38 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCC--------ccchHHhhCcC--CC-CCC
Confidence 5888998766 67777764 34467899887 45 444
No 98
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=50.36 E-value=5.9 Score=24.46 Aligned_cols=20 Identities=40% Similarity=1.017 Sum_probs=11.6
Q ss_pred cccccccCCccc-------cccchhhh
Q 021917 12 SLSCVRCGKPAH-------LQCPKCME 31 (305)
Q Consensus 12 ~~~c~~c~~~~~-------l~cp~c~~ 31 (305)
.+.|..||.++. ++||.|-.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 467888988655 78887753
No 99
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=50.16 E-value=7.2 Score=37.70 Aligned_cols=34 Identities=32% Similarity=0.758 Sum_probs=26.7
Q ss_pred cccccccccccCCccc-cccchhhhcCCCCCCCcccChhhhhh
Q 021917 8 AETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKA 49 (305)
Q Consensus 8 ~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~q~cfk~ 49 (305)
.+-+...|..|+++.. -+||.|+ +-||+=+|-|.
T Consensus 13 ~~~~~vlCgVClknE~KYkCPRCl--------~rtCsLeCskk 47 (390)
T KOG2858|consen 13 GGLHSVLCGVCLKNEPKYKCPRCL--------ARTCSLECSKK 47 (390)
T ss_pred cccchhhhhhcccCcccccCcchh--------hhheecccccc
Confidence 3445567988999888 9999998 44899999764
No 100
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=48.47 E-value=35 Score=21.39 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 021917 154 TCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI 187 (305)
Q Consensus 154 A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~ 187 (305)
.|.+...++..+.+.++...|+.+|...+.+.+-
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 4678888999999999999999999999988764
No 101
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=48.47 E-value=5.2 Score=27.42 Aligned_cols=37 Identities=30% Similarity=0.738 Sum_probs=25.1
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCCcccChhhhhhch--hHHHHHh
Q 021917 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (305)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~w--~~hk~~h 58 (305)
.|.+|.+ +.+ .+|-.|.+..| -++||...= ..|+..|
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydL--------C~~Cf~~~~~~~~H~~~H 44 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSL--------CLGCYTKGRETKRHNSLH 44 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCc--------hHHHHhCCCcCCCCCCCC
Confidence 5888998 666 77888865443 678998652 4455455
No 102
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=45.87 E-value=75 Score=33.46 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecC--CC---ccccCCCCCCCCCCCCEEEEEee
Q 021917 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSV--NE---VICHGIPDSRKLEDGDIVNIDVT 234 (305)
Q Consensus 162 l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~--n~---~~~Hg~p~~r~L~~GDiV~iDv~ 234 (305)
-+.+...++||.+-.+|...+...+.+.|..-.| +|-..+.++. .. ..+...-++|+|+.|++++|.+|
T Consensus 311 Qk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~p----nF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~~fnis~g 384 (1001)
T COG5406 311 QKYILGLVRPGTDSGIIYSEAEKYISSNGPELGP----NFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISLG 384 (1001)
T ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCc----hHhhhhhhhccccccccccceeccCCceeccccEEEEeec
Confidence 3455668999999999999999999988865433 2333333222 11 11222335689999999999885
No 103
>PF12773 DZR: Double zinc ribbon
Probab=45.47 E-value=13 Score=24.95 Aligned_cols=31 Identities=35% Similarity=0.840 Sum_probs=22.7
Q ss_pred ccccccccCCccc------cccchhhhcCCCCCCCcccC
Q 021917 11 TSLSCVRCGKPAH------LQCPKCMELKLPREGAAFCT 43 (305)
Q Consensus 11 ~~~~c~~c~~~~~------l~cp~c~~~~~~~~~~~fc~ 43 (305)
..+.|..||.+.. +.||.|....-+ ...||.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~--~~~fC~ 47 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPP--NAKFCP 47 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcC--CcCccC
Confidence 3577999998555 569999998543 677875
No 104
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=44.38 E-value=6.4 Score=26.93 Aligned_cols=29 Identities=28% Similarity=0.789 Sum_probs=20.6
Q ss_pred cccccC-Cccc---cccchhhhcCCCCCCCcccChhhhhhc
Q 021917 14 SCVRCG-KPAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (305)
Q Consensus 14 ~c~~c~-~~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~ 50 (305)
.|.+|+ ++.. .+|-.|.+.. --++||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~d--------lC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYD--------LCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCc--------cchhHHhCC
Confidence 588899 5666 7788776443 357999876
No 105
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=43.06 E-value=8 Score=41.49 Aligned_cols=37 Identities=27% Similarity=0.611 Sum_probs=0.0
Q ss_pred CCCccccccccccccCCccc-cccchhhhcCCCCCCCcccC
Q 021917 4 GSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCT 43 (305)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~ 43 (305)
|+.+++...|.|..||+.+- ..||.|-..-. .-|+|.
T Consensus 647 g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~---~~~~Cp 684 (900)
T PF03833_consen 647 GTIEVEIGRRRCPKCGKETFYNRCPECGSHTE---PVYVCP 684 (900)
T ss_dssp -----------------------------------------
T ss_pred CeeEEeeecccCcccCCcchhhcCcccCCccc---cceecc
Confidence 45667777889999998877 88888876533 356664
No 106
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=42.52 E-value=9.5 Score=27.36 Aligned_cols=23 Identities=22% Similarity=0.716 Sum_probs=16.2
Q ss_pred cccchhhhcCCCCCCCcccChhhhh
Q 021917 24 LQCPKCMELKLPREGAAFCTQDCFK 48 (305)
Q Consensus 24 l~cp~c~~~~~~~~~~~fc~q~cfk 48 (305)
..|+.|-|. ||. +--|||.+|..
T Consensus 9 ~HC~VCg~a-Ip~-de~~CSe~C~e 31 (64)
T COG4068 9 RHCVVCGKA-IPP-DEQVCSEECGE 31 (64)
T ss_pred ccccccCCc-CCC-ccchHHHHHHH
Confidence 457777764 433 77899999973
No 107
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=42.22 E-value=7.3 Score=26.82 Aligned_cols=37 Identities=38% Similarity=0.819 Sum_probs=23.8
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCCcccChhhhhhc--hhHHHHHh
Q 021917 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKAS--WTSHKSVH 58 (305)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~--w~~hk~~h 58 (305)
.|.+|++ ++. .+|-.|....| -|+||... =..||.-|
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DL--------C~~Cf~~g~~~~~H~~~H 44 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDL--------CQSCFFSGRTSKSHKNSH 44 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCc--------hHHHHhCCCcCCCCCCCC
Confidence 5888986 555 77888875544 68899654 13444444
No 108
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=42.05 E-value=15 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=10.7
Q ss_pred cccccCCccccccchhhhcCC
Q 021917 14 SCVRCGKPAHLQCPKCMELKL 34 (305)
Q Consensus 14 ~c~~c~~~~~l~cp~c~~~~~ 34 (305)
.|..||+..--+|..|-|++.
T Consensus 27 ~CPnCG~~~I~RC~~CRk~~~ 47 (59)
T PRK14890 27 LCPNCGEVIIYRCEKCRKQSN 47 (59)
T ss_pred eCCCCCCeeEeechhHHhcCC
Confidence 355555544455555555553
No 109
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=41.70 E-value=8.9 Score=31.80 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=21.6
Q ss_pred ccccccccCCccccccch--hhhcCCCCCCCcccChhhhhhc
Q 021917 11 TSLSCVRCGKPAHLQCPK--CMELKLPREGAAFCTQDCFKAS 50 (305)
Q Consensus 11 ~~~~c~~c~~~~~l~cp~--c~~~~~~~~~~~fc~q~cfk~~ 50 (305)
....|..||..+---.-+ -.+-|. .-+|||..|.|..
T Consensus 3 ~~e~CsFcG~kIyPG~G~~fVR~DGk---vf~FcssKC~k~f 41 (131)
T PRK14891 3 ETRTCDYTGEEIEPGTGTMFVRKDGT---VLHFVDSKCEKNY 41 (131)
T ss_pred ceeeecCcCCcccCCCCcEEEecCCC---EEEEecHHHHHHH
Confidence 356798899865511110 112222 4789999996554
No 110
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=41.61 E-value=7.8 Score=26.25 Aligned_cols=35 Identities=29% Similarity=0.875 Sum_probs=23.8
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCCcccChhhhhhchhHHHHHh
Q 021917 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (305)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h 58 (305)
.|.+|+. +.. .+|-.|.... .-+.||.. +.|..-|
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyD--------LC~~Cf~~--~~H~~~H 40 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFD--------FCENCFKT--RKHNTRH 40 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCcc--------chHHhhCC--CCcCCCC
Confidence 5888986 555 7788887544 36889998 3454444
No 111
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=39.88 E-value=12 Score=24.94 Aligned_cols=21 Identities=33% Similarity=0.980 Sum_probs=14.6
Q ss_pred ccccccccCCcc-------ccccchhhh
Q 021917 11 TSLSCVRCGKPA-------HLQCPKCME 31 (305)
Q Consensus 11 ~~~~c~~c~~~~-------~l~cp~c~~ 31 (305)
..-.|..||... .+.||.|-.
T Consensus 2 ~~y~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 2 AEYKCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred CEEECCCCCCEEEECCCCCceECCCCCC
Confidence 345799998843 278997753
No 112
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=59 Score=32.63 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCEEEEEeeceeCcE
Q 021917 172 GVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGV 240 (305)
Q Consensus 172 GvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDiV~iDv~~~~~GY 240 (305)
-+|+.||+..+.....++.-+ .|.++.++.||.|.||+.++.+|-
T Consensus 131 ev~d~dvd~~L~~l~~~~a~~------------------------~~~e~~a~~gD~v~IDf~g~iDg~ 175 (441)
T COG0544 131 EVTDEDVDEELEKLRKRFATL------------------------EPVEGAAENGDRVTIDFEGSVDGE 175 (441)
T ss_pred ccCHHHHHHHHHHHHHhcCcc------------------------cccccccccCCEEEEEEEEEEcCe
Confidence 357888888887655544322 133333899999999999887764
No 113
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=38.77 E-value=16 Score=21.01 Aligned_cols=15 Identities=40% Similarity=1.187 Sum_probs=7.9
Q ss_pred ccccCCccc---cccchh
Q 021917 15 CVRCGKPAH---LQCPKC 29 (305)
Q Consensus 15 c~~c~~~~~---l~cp~c 29 (305)
|..||++.. ..||.|
T Consensus 2 Cp~CG~~~~~~~~fC~~C 19 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNC 19 (23)
T ss_pred CcccCCCCCCcCcchhhh
Confidence 555666444 445555
No 114
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=38.46 E-value=15 Score=41.25 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=18.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH
Q 021917 141 EIKTPDQIERMRETCRIAREVLDAA 165 (305)
Q Consensus 141 ~vKs~~EIe~mR~A~~ia~~~l~~~ 165 (305)
.|.+..--+.|-+.++..+.-|...
T Consensus 837 iil~~~aa~yl~~va~fiDdLL~k~ 861 (1337)
T PRK14714 837 IVLSDGAAEYLLKVAKFVDDLLEKF 861 (1337)
T ss_pred EEcchHHHHHHHHHHHHHHHHHHHh
Confidence 4667777778888888888877653
No 115
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.11 E-value=16 Score=29.43 Aligned_cols=22 Identities=36% Similarity=0.845 Sum_probs=15.5
Q ss_pred ccccccccCC------ccccccchhhhc
Q 021917 11 TSLSCVRCGK------PAHLQCPKCMEL 32 (305)
Q Consensus 11 ~~~~c~~c~~------~~~l~cp~c~~~ 32 (305)
.+|+|..||+ --...||.|-..
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG~~ 35 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCGTE 35 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCCCc
Confidence 3689999987 122679988754
No 116
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=37.94 E-value=18 Score=38.04 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.6
Q ss_pred cccccccCCccc-cccchhhhcCCCCCCCcccCh
Q 021917 12 SLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (305)
Q Consensus 12 ~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~q 44 (305)
.+.|..||.+.. ..||.|-..--+ +.-||.+
T Consensus 15 akFC~~CG~~l~~~~Cp~CG~~~~~--~~~fC~~ 46 (645)
T PRK14559 15 NRFCQKCGTSLTHKPCPQCGTEVPV--DEAHCPN 46 (645)
T ss_pred CccccccCCCCCCCcCCCCCCCCCc--ccccccc
Confidence 467999999866 789999998654 7779864
No 117
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=36.34 E-value=19 Score=25.88 Aligned_cols=19 Identities=37% Similarity=0.976 Sum_probs=8.7
Q ss_pred ccccCCccccccchhhhcC
Q 021917 15 CVRCGKPAHLQCPKCMELK 33 (305)
Q Consensus 15 c~~c~~~~~l~cp~c~~~~ 33 (305)
|..||+..--+|-+|-|+|
T Consensus 30 CPnCGe~~I~Rc~~CRk~g 48 (61)
T COG2888 30 CPNCGEVEIYRCAKCRKLG 48 (61)
T ss_pred CCCCCceeeehhhhHHHcC
Confidence 4444444444444444544
No 118
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=36.07 E-value=14 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=20.6
Q ss_pred ccccccccCCccc----cccchhhhcCCCCCCCcccChhhhh
Q 021917 11 TSLSCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFK 48 (305)
Q Consensus 11 ~~~~c~~c~~~~~----l~cp~c~~~~~~~~~~~fc~q~cfk 48 (305)
..++|..||+++. +-=. .+-|. .-+|||..|.|
T Consensus 2 ~~~~CsFcG~~I~PGtG~m~V--r~Dg~---v~~FcssKc~k 38 (66)
T COG2075 2 KVRVCSFCGKKIEPGTGIMYV--RNDGK---VLRFCSSKCEK 38 (66)
T ss_pred ceeEecCcCCccCCCceEEEE--ecCCe---EEEEechhHHH
Confidence 4578999998654 1101 11222 46899999987
No 119
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=36.01 E-value=96 Score=29.75 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021917 254 DEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (305)
Q Consensus 254 ~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~ 293 (305)
-.+.++..++-+.+.....+.+|||++.-||-+.++...+
T Consensus 85 ~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR 124 (397)
T KOG2775|consen 85 YQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTR 124 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 3556777888888888899999999999999888876554
No 120
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=35.22 E-value=69 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=29.8
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCEEEE
Q 021917 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (305)
Q Consensus 169 i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDiV~i 231 (305)
++.|.|-.+++..+|.-+.+.=.+. .+. + ......+..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~A----------~v~-~-----~~~vg~d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIEA----------VGG-R-----RRLEGKDVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEEE----------EEc-c-----CEEECCCEEecCCCEEEE
Confidence 4568899999999997666532221 111 1 122234568999999987
No 121
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=34.91 E-value=18 Score=21.26 Aligned_cols=7 Identities=43% Similarity=1.412 Sum_probs=5.4
Q ss_pred cccchhh
Q 021917 24 LQCPKCM 30 (305)
Q Consensus 24 l~cp~c~ 30 (305)
..||.|-
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 7888884
No 122
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=33.63 E-value=12 Score=25.30 Aligned_cols=35 Identities=23% Similarity=0.565 Sum_probs=22.2
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCCcccChhhhhhchhHHHHHh
Q 021917 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (305)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h 58 (305)
.|.+|++ +.. .+|-.|..- ---++||.. ..|+.-|
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dy--------DLC~~C~~~--~~H~~~H 40 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNY--------DLCTTCYHG--DKHDLEH 40 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCc--------cchHHHhCC--CCCCCCC
Confidence 5888985 443 778877643 336789985 3454444
No 123
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.18 E-value=17 Score=24.33 Aligned_cols=34 Identities=24% Similarity=0.732 Sum_probs=20.0
Q ss_pred ccccccccccCCccc--cccchhhhcCCCCCCCcccChhhhh
Q 021917 9 ETTSLSCVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCFK 48 (305)
Q Consensus 9 ~~~~~~c~~c~~~~~--l~cp~c~~~~~~~~~~~fc~q~cfk 48 (305)
+-++..|..||++-+ ..=-.|-. ..-|||+-|-+
T Consensus 5 ~lp~K~C~~C~rpf~WRKKW~~~Wd------~VkYCS~rCR~ 40 (42)
T PF10013_consen 5 NLPSKICPVCGRPFTWRKKWARCWD------EVKYCSDRCRR 40 (42)
T ss_pred cCCCCcCcccCCcchHHHHHHHhch------hhccHHHHhcc
Confidence 345677888888776 22222322 33488888843
No 124
>PRK12495 hypothetical protein; Provisional
Probab=32.61 E-value=19 Score=32.64 Aligned_cols=27 Identities=33% Similarity=0.725 Sum_probs=20.9
Q ss_pred cccccccccccCCccc-----cccchhhhcCC
Q 021917 8 AETTSLSCVRCGKPAH-----LQCPKCMELKL 34 (305)
Q Consensus 8 ~~~~~~~c~~c~~~~~-----l~cp~c~~~~~ 34 (305)
+.|....|..||.|+. ..||.|.+..-
T Consensus 38 atmsa~hC~~CG~PIpa~pG~~~Cp~CQ~~~~ 69 (226)
T PRK12495 38 ATMTNAHCDECGDPIFRHDGQEFCPTCQQPVT 69 (226)
T ss_pred cccchhhcccccCcccCCCCeeECCCCCCccc
Confidence 3455678999999876 56999998754
No 125
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=32.39 E-value=23 Score=22.17 Aligned_cols=17 Identities=35% Similarity=1.118 Sum_probs=11.1
Q ss_pred cccccCCccc------cccchhh
Q 021917 14 SCVRCGKPAH------LQCPKCM 30 (305)
Q Consensus 14 ~c~~c~~~~~------l~cp~c~ 30 (305)
.|..||.+.. ++||.|-
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG 24 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECG 24 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS
T ss_pred CCCcCCCeeEcCCCCcEECCcCC
Confidence 4777887554 6788764
No 126
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=32.18 E-value=21 Score=25.15 Aligned_cols=21 Identities=33% Similarity=0.860 Sum_probs=16.8
Q ss_pred ccccccccCCccc-----cccchhhh
Q 021917 11 TSLSCVRCGKPAH-----LQCPKCME 31 (305)
Q Consensus 11 ~~~~c~~c~~~~~-----l~cp~c~~ 31 (305)
...+|..||+..+ .+||.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cga 29 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGA 29 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCC
Confidence 3467999999884 88999974
No 127
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=31.39 E-value=25 Score=23.59 Aligned_cols=18 Identities=17% Similarity=0.649 Sum_probs=13.9
Q ss_pred CCCCcccChhhhhhchhH
Q 021917 36 REGAAFCTQDCFKASWTS 53 (305)
Q Consensus 36 ~~~~~fc~q~cfk~~w~~ 53 (305)
.+.+-+||++|-..++..
T Consensus 20 ~~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 20 DDGSLYCSEECRLKDQEK 37 (43)
T ss_pred CCCccccCHHHHhHhhhc
Confidence 347889999998887543
No 128
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=31.00 E-value=46 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=22.5
Q ss_pred eeeecCCCcc-ccCCCCCCCCCCCCEEEEEeece
Q 021917 204 SCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTVY 236 (305)
Q Consensus 204 ~v~ts~n~~~-~Hg~p~~r~L~~GDiV~iDv~~~ 236 (305)
.+....|..+ +...+.+.+|++||.|-| +.+.
T Consensus 30 ~vavavN~~iv~~~~~~~~~L~dgD~Iei-v~~V 62 (65)
T PRK06488 30 WLATAVNGELVHKEARAQFVLHEGDRIEI-LSPM 62 (65)
T ss_pred eEEEEECCEEcCHHHcCccccCCCCEEEE-EEec
Confidence 4667777544 555567889999999987 4443
No 129
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=30.21 E-value=34 Score=34.82 Aligned_cols=67 Identities=24% Similarity=0.266 Sum_probs=45.7
Q ss_pred CCEEEEEeeceeCcEEeceeeEEEec--------CCCHHHHH--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021917 226 GDIVNIDVTVYYKGVHGDLNETYFVG--------NADEASRQ--LVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (305)
Q Consensus 226 GDiV~iDv~~~~~GY~~D~~RT~~vG--------~~~~e~~~--l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~ 292 (305)
.|.-.+-++..|.||++|+++-|++| ..-|+..+ +-...-+.+-..++.++||.--.++-.+-++++
T Consensus 584 nD~taLvvS~aYkG~WsDLsELWFLGMQt~~G~lPLvPWLs~~AL~S~W~e~ivk~L~kVk~~tl~~nv~sAYe~~L 660 (698)
T KOG2611|consen 584 NDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFL 660 (698)
T ss_pred CCCceEEeehhhhhhhhhHHHHHHHhHHHHcCcccchhhhcHHHHhcccHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 66666779999999999999999998 12233322 222334555667788999986666666555554
No 130
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=30.09 E-value=24 Score=28.50 Aligned_cols=22 Identities=32% Similarity=0.768 Sum_probs=15.6
Q ss_pred ccccccCCccc-----cccchhhhcCC
Q 021917 13 LSCVRCGKPAH-----LQCPKCMELKL 34 (305)
Q Consensus 13 ~~c~~c~~~~~-----l~cp~c~~~~~ 34 (305)
-.|..||.... +.||.|...++
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCCCCCc
Confidence 45988997433 66999986554
No 131
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=29.87 E-value=32 Score=25.85 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC
Q 021917 158 AREVLDAAARMIRPGVTTDEIDRVVHEATITAGG 191 (305)
Q Consensus 158 a~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~ 191 (305)
+.++...+.+....++|+.||...+...+.+.|.
T Consensus 41 ~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~ 74 (90)
T PF03477_consen 41 ASEVENKLYDSGKEEISTEEIQDIVENALMEEGF 74 (90)
T ss_dssp HHHHHTC-ST----TEEHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCCh
Confidence 3344333333333499999999999999997763
No 132
>PRK00420 hypothetical protein; Validated
Probab=29.59 E-value=20 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=17.7
Q ss_pred ccccccccccCCc------cccccchhhhcC
Q 021917 9 ETTSLSCVRCGKP------AHLQCPKCMELK 33 (305)
Q Consensus 9 ~~~~~~c~~c~~~------~~l~cp~c~~~~ 33 (305)
.|.+..|..||-+ ...+||.|.+.-
T Consensus 20 ~ml~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 20 KMLSKHCPVCGLPLFELKDGEVVCPVHGKVY 50 (112)
T ss_pred HHccCCCCCCCCcceecCCCceECCCCCCee
Confidence 4556779889863 337899998743
No 133
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=29.01 E-value=22 Score=23.78 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.6
Q ss_pred CcccChhhhhh
Q 021917 39 AAFCTQDCFKA 49 (305)
Q Consensus 39 ~~fc~q~cfk~ 49 (305)
=+|||++|-..
T Consensus 25 Y~FCS~~C~~~ 35 (47)
T PF04945_consen 25 YYFCSEGCKEK 35 (47)
T ss_dssp EEESSHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 58999999543
No 134
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=28.77 E-value=60 Score=22.86 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=31.2
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCEEEE
Q 021917 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (305)
Q Consensus 169 i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDiV~i 231 (305)
+..|.|-.|++..++..+.++- +..-+|.. -..-+++|++||.|.|
T Consensus 13 ~~~g~T~~d~A~~I~~~l~~~~--------------~~A~Vng~---~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 13 LPEGSTVLDVAYSIHSSLAKRA--------------VAAKVNGQ---LVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EETTBBHHHHHHHHSHHHHHCE--------------EEEEETTE---EEETTSBB-SSEEEEE
T ss_pred CCCCCCHHHHHHHHCHHHHhhe--------------eEEEEcCE---ECCCCCCcCCCCEEEE
Confidence 5679999999999998887751 22233431 1234678999999986
No 135
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=28.48 E-value=1.5e+02 Score=22.12 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=30.2
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCEEEE
Q 021917 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (305)
Q Consensus 169 i~pGvTe~EI~~~v~~~~~~~G~~psplny~~fp~~v~ts~n~~~~Hg~p~~r~L~~GDiV~i 231 (305)
++.|.|-.|++..+|..+.+.=.+. ..+ .| ..-.+-+.+|++||+|.|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~f~~A----------i~~--k~---~~~vg~~~~L~dgDvV~I 74 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDGFLHA----------IDA--RT---GRRVGEDYELKHRDVIKI 74 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhcceee----------EEe--eC---CEEeCCCcEecCCCEEEE
Confidence 4568899999999997666431110 011 11 223345678999999987
No 136
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=28.44 E-value=27 Score=28.27 Aligned_cols=22 Identities=32% Similarity=0.895 Sum_probs=16.1
Q ss_pred ccccccCCccc-----cccchhhhcCC
Q 021917 13 LSCVRCGKPAH-----LQCPKCMELKL 34 (305)
Q Consensus 13 ~~c~~c~~~~~-----l~cp~c~~~~~ 34 (305)
..|..||+... +.||.|....+
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCcCCCc
Confidence 45989998543 66999987653
No 137
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=28.39 E-value=1.1e+02 Score=24.18 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=49.4
Q ss_pred EEEEeeceeCcEEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHHhcCC
Q 021917 229 VNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGV-------RFREIGEVINRHATMSGF 297 (305)
Q Consensus 229 V~iDv~~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~-------~~~eI~~ai~~~~~~~G~ 297 (305)
..+|+.+.+.+|- .+++.+.+-+ ..+..+.++.+.+.....+..+--|+ +-.+..+.|.+.+++.||
T Consensus 23 ~V~DV~veHp~YG-~i~~~L~i~s-r~Dv~~Fi~~l~~~~~~~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 23 RVLDVIVEHPVYG-EITGNLNISS-RRDVDKFIEKLEKSKAKPLSSLTGGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp EEEEEEEEETTTE-EEEEEEEE-S-HHHHHHHHHHHHH--S--STTGGGGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEeCCCCc-EEEEEEecCC-HHHHHHHHHHHhccCCcchHHhcCCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 4458999999988 9999999964 56677777777777777777777774 567889999999999998
No 138
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=28.30 E-value=24 Score=23.65 Aligned_cols=17 Identities=29% Similarity=0.985 Sum_probs=12.3
Q ss_pred cccccCCccc------cccchhh
Q 021917 14 SCVRCGKPAH------LQCPKCM 30 (305)
Q Consensus 14 ~c~~c~~~~~------l~cp~c~ 30 (305)
.|..||.+.+ ++||.|-
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG 26 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECG 26 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCC
Confidence 5888988544 7788775
No 139
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=28.05 E-value=1.3e+02 Score=21.92 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021917 253 ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (305)
Q Consensus 253 ~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~ 292 (305)
.+.+++.+.+.+.+.+..+++.++.|.+..=+..-++...
T Consensus 10 ~~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~ 49 (73)
T PF12631_consen 10 TNARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREAL 49 (73)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4789999999999999999999998876554444444433
No 140
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=27.93 E-value=73 Score=22.32 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH---HHH-hcCCC-CcHHHHHHHHHH
Q 021917 150 RMRETCRIAREVLDA---AAR-MIRPG-VTTDEIDRVVHE 184 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~---~~~-~i~pG-vTe~EI~~~v~~ 184 (305)
.+.+|++|+.+++.. +.+ .++.| +|+.|++++++-
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~p 49 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLDP 49 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTSH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCH
Confidence 678899999998855 222 33456 799999988653
No 141
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=27.50 E-value=27 Score=38.19 Aligned_cols=33 Identities=33% Similarity=0.680 Sum_probs=26.5
Q ss_pred ccccccccccccCCccc-cccchhhhcCCCCCCCccc
Q 021917 7 AAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFC 42 (305)
Q Consensus 7 ~~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc 42 (305)
.++..-|+|..||+.+- ..||.|-..-. ..++|
T Consensus 620 ~vev~~RKCPkCG~yTlk~rCP~CG~~Te---~~~pc 653 (1095)
T TIGR00354 620 EVEIAIRKCPQCGKESFWLKCPVCGELTE---QLYYG 653 (1095)
T ss_pred EEEEEEEECCCCCcccccccCCCCCCccc---cccce
Confidence 45556689999999888 99999987654 47888
No 142
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=27.33 E-value=1.6e+02 Score=25.68 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=37.9
Q ss_pred CCCCCCCCCEEEEEeece-eCcEEecee-----eEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Q 021917 219 DSRKLEDGDIVNIDVTVY-YKGVHGDLN-----ETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281 (305)
Q Consensus 219 ~~r~L~~GDiV~iDv~~~-~~GY~~D~~-----RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~ 281 (305)
+....+.||.|.++..+. .+|-.-|-+ .+|.+|. ..+..++++++..+++|-++
T Consensus 82 ~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~---------~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 82 EGTTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQ---------QDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred CCCcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCC---------cchhHHHHHHHcCCCCCCEE
Confidence 334568999999998777 567555544 3677774 13466788899999999643
No 143
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=27.19 E-value=15 Score=29.61 Aligned_cols=22 Identities=27% Similarity=0.822 Sum_probs=14.4
Q ss_pred cccccccCCccc-----cccchhhhcC
Q 021917 12 SLSCVRCGKPAH-----LQCPKCMELK 33 (305)
Q Consensus 12 ~~~c~~c~~~~~-----l~cp~c~~~~ 33 (305)
...|..||+.-. ..||.|....
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCC
Confidence 356999999655 6799998754
No 144
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=26.69 E-value=17 Score=25.06 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=18.8
Q ss_pred cccccCCccc---cccchhhhcCCCCCCCcccChhhhhhc
Q 021917 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (305)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~~~~~~~~~~~fc~q~cfk~~ 50 (305)
.|.+|++... .+|-.|.. |---|+||...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d--------~DlC~~Cf~~g 33 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTD--------MDLCKTCFLGG 33 (48)
T ss_pred CCCCCCCcCCCceEECCCCCC--------chhHHHHHhCC
Confidence 4888888554 55666654 33468898765
No 145
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=26.61 E-value=24 Score=30.22 Aligned_cols=20 Identities=35% Similarity=0.968 Sum_probs=14.7
Q ss_pred cccccccCCccccc-----cchhhh
Q 021917 12 SLSCVRCGKPAHLQ-----CPKCME 31 (305)
Q Consensus 12 ~~~c~~c~~~~~l~-----cp~c~~ 31 (305)
...|+.||+.|++- |-+|-|
T Consensus 4 g~~CqdCGNqAkk~C~~~rCRtCCk 28 (154)
T PF05142_consen 4 GISCQDCGNQAKKDCSHRRCRTCCK 28 (154)
T ss_pred CcchhhhcchhhcCCCcchhhhhhc
Confidence 35699999999955 555655
No 146
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=26.43 E-value=16 Score=25.73 Aligned_cols=23 Identities=35% Similarity=1.021 Sum_probs=16.3
Q ss_pred cccccccCC---ccc------cccchhhhcCC
Q 021917 12 SLSCVRCGK---PAH------LQCPKCMELKL 34 (305)
Q Consensus 12 ~~~c~~c~~---~~~------l~cp~c~~~~~ 34 (305)
+-.|.-|+| .|. .+||.|+.+.-
T Consensus 4 tiRC~~CnKlLa~a~~~~yle~KCPrCK~vN~ 35 (60)
T COG4416 4 TIRCAKCNKLLAEAEGQAYLEKKCPRCKEVNE 35 (60)
T ss_pred eeehHHHhHHHHhcccceeeeecCCccceeee
Confidence 456888988 222 67999998664
No 147
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=25.88 E-value=26 Score=26.18 Aligned_cols=12 Identities=58% Similarity=1.423 Sum_probs=10.6
Q ss_pred CcccChhhhhhc
Q 021917 39 AAFCTQDCFKAS 50 (305)
Q Consensus 39 ~~fc~q~cfk~~ 50 (305)
+.|||..||+++
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 479999999986
No 148
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.80 E-value=35 Score=28.38 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=15.5
Q ss_pred ccccccccCCc------cccccchhhhc
Q 021917 11 TSLSCVRCGKP------AHLQCPKCMEL 32 (305)
Q Consensus 11 ~~~~c~~c~~~------~~l~cp~c~~~ 32 (305)
.+|+|..||+- -...||.|...
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCCc
Confidence 36889999872 22778877654
No 149
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=25.75 E-value=1.7e+02 Score=29.02 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 021917 160 EVLDAAARMIRPGVTTDEIDRVVHEATIT 188 (305)
Q Consensus 160 ~~l~~~~~~i~pGvTe~EI~~~v~~~~~~ 188 (305)
.+-.+++++++||+...+++...+..+++
T Consensus 310 da~navm~a~KpGv~W~Dmh~La~kvlle 338 (492)
T KOG2737|consen 310 DASNAVMEAMKPGVWWVDMHKLAEKVLLE 338 (492)
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 44456788999999999998887766654
No 150
>PRK07440 hypothetical protein; Provisional
Probab=25.33 E-value=1.2e+02 Score=22.04 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=23.9
Q ss_pred ceeeecCCCcc-ccCCCCCCCCCCCCEEEEEeecee
Q 021917 203 KSCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTVYY 237 (305)
Q Consensus 203 ~~v~ts~n~~~-~Hg~p~~r~L~~GDiV~iDv~~~~ 237 (305)
..++.-.|..+ +...+.+..|++||.|-| +.+..
T Consensus 34 ~~vav~~N~~iv~r~~w~~~~L~~gD~IEI-v~~v~ 68 (70)
T PRK07440 34 RLVAVEYNGEILHRQFWEQTQVQPGDRLEI-VTIVG 68 (70)
T ss_pred CeEEEEECCEEeCHHHcCceecCCCCEEEE-EEEec
Confidence 45777778554 445567889999999987 54433
No 151
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=25.21 E-value=1.4e+02 Score=20.99 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=20.0
Q ss_pred eeecCCCc-cccCCCCCCCCCCCCEEEEEeec
Q 021917 205 CCTSVNEV-ICHGIPDSRKLEDGDIVNIDVTV 235 (305)
Q Consensus 205 v~ts~n~~-~~Hg~p~~r~L~~GDiV~iDv~~ 235 (305)
+..-.|.. +....+.+.+|++||.|-| +..
T Consensus 32 vav~vNg~iv~r~~~~~~~l~~gD~vei-~~~ 62 (66)
T PRK05659 32 VAVEVNGEIVPRSQHASTALREGDVVEI-VHA 62 (66)
T ss_pred EEEEECCeEeCHHHcCcccCCCCCEEEE-EEE
Confidence 44556743 3444567889999999987 443
No 152
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=24.40 E-value=25 Score=24.29 Aligned_cols=22 Identities=32% Similarity=0.991 Sum_probs=16.0
Q ss_pred ccccccccccCCccc-------cccchhh
Q 021917 9 ETTSLSCVRCGKPAH-------LQCPKCM 30 (305)
Q Consensus 9 ~~~~~~c~~c~~~~~-------l~cp~c~ 30 (305)
+++.-+|..||+... .+||-|-
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg 31 (49)
T COG1996 3 AMMEYKCARCGREVELDQETRGIRCPYCG 31 (49)
T ss_pred ceEEEEhhhcCCeeehhhccCceeCCCCC
Confidence 455667999999654 6799774
No 153
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.13 E-value=39 Score=21.39 Aligned_cols=19 Identities=32% Similarity=0.922 Sum_probs=12.9
Q ss_pred ccccccCCc----------cccccchhhh
Q 021917 13 LSCVRCGKP----------AHLQCPKCME 31 (305)
Q Consensus 13 ~~c~~c~~~----------~~l~cp~c~~ 31 (305)
-.|..||+. ....||.|..
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 358778872 2267998876
No 154
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=24.05 E-value=3.3e+02 Score=26.25 Aligned_cols=71 Identities=24% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCEEEEEeece---eCcEEeceeeEEEecC--CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhcCCcee
Q 021917 226 GDIVNIDVTVY---YKGVHGDLNETYFVGN--ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVE 300 (305)
Q Consensus 226 GDiV~iDv~~~---~~GY~~D~~RT~~vG~--~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~vv 300 (305)
.=+|..|++.. -+|.++=+.. |. -++....|.+.+..--+++.+.+-|--+.----.+|++.+.++||..+
T Consensus 112 ~l~vi~DVcLc~YT~hGHcGil~~----g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~~v 187 (323)
T PRK09283 112 ELGVITDVCLDEYTSHGHCGILED----GYVDNDETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEAGFTDV 187 (323)
T ss_pred CcEEEEeeeccCCCCCCceecccC----CcCcCHHHHHHHHHHHHHHHHhCCCEEEcccccccHHHHHHHHHHHCCCCCC
Confidence 34566677644 3566655544 43 345578888888888888889999865555555789999999999765
No 155
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=23.99 E-value=33 Score=21.61 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=5.6
Q ss_pred cccchhhh
Q 021917 24 LQCPKCME 31 (305)
Q Consensus 24 l~cp~c~~ 31 (305)
++||.|..
T Consensus 26 v~C~~C~~ 33 (38)
T TIGR02098 26 VRCGKCGH 33 (38)
T ss_pred EECCCCCC
Confidence 67887764
No 156
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.88 E-value=32 Score=24.29 Aligned_cols=21 Identities=43% Similarity=0.963 Sum_probs=14.3
Q ss_pred cccccCCcc-------------ccccchhhhcCC
Q 021917 14 SCVRCGKPA-------------HLQCPKCMELKL 34 (305)
Q Consensus 14 ~c~~c~~~~-------------~l~cp~c~~~~~ 34 (305)
.|..||+-+ .|-||.|++..+
T Consensus 6 ~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 6 LCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred ECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 477788533 167998887654
No 157
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.80 E-value=35 Score=27.75 Aligned_cols=17 Identities=41% Similarity=1.050 Sum_probs=12.6
Q ss_pred ccccCCccc---cccchhhh
Q 021917 15 CVRCGKPAH---LQCPKCME 31 (305)
Q Consensus 15 c~~c~~~~~---l~cp~c~~ 31 (305)
|..||.+-. |.|+.|.-
T Consensus 1 CPvCg~~l~vt~l~C~~C~t 20 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGT 20 (113)
T ss_pred CCCCCCceEEEEEEcCCCCC
Confidence 778888544 88998864
No 158
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=22.78 E-value=4.8e+02 Score=22.17 Aligned_cols=39 Identities=3% Similarity=0.029 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 021917 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT 188 (305)
Q Consensus 149 e~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~ 188 (305)
..++.+|+|+++++..-...+--+-++ +....+.+.+..
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~-~~~~~LD~~LWt 51 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA-DQQEMLNKNLWT 51 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH-HHHHHHHHHhcC
Confidence 467889999999988855554444444 345566666664
No 159
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.73 E-value=31 Score=28.02 Aligned_cols=21 Identities=33% Similarity=0.815 Sum_probs=15.5
Q ss_pred cccccccCCccc-----cccchhhhc
Q 021917 12 SLSCVRCGKPAH-----LQCPKCMEL 32 (305)
Q Consensus 12 ~~~c~~c~~~~~-----l~cp~c~~~ 32 (305)
+-.|.+|+|+++ -+|+-|.+.
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCCc
Confidence 345999999887 568877654
No 160
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=22.59 E-value=3.2e+02 Score=26.70 Aligned_cols=131 Identities=15% Similarity=0.228 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCC-CCC--CCCCce---------------
Q 021917 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY--HFFPKS--------------- 204 (305)
Q Consensus 143 Ks~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psp-lny--~~fp~~--------------- 204 (305)
-|+.||+.+-++-...+..+..-...+-|..++.+|...++.++.+.-..|+- ||. ..++.-
T Consensus 97 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPTiNlN~lf~~~~~d~~~~~~LQ~~~~~lM 176 (381)
T PF09506_consen 97 VSDAELAFLAAVPERMEALLKEFLPAILPELSQEEIEKLIEASVLDTRVSPTINLNSLFDLVPDDVERQQQLQQMMQELM 176 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCccchHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999988776641 221 111111
Q ss_pred -------eeec-CCCccccCCCCC----------CCCCCCCEEEEEeecee-------------CcEEeceeeEEEec--
Q 021917 205 -------CCTS-VNEVICHGIPDS----------RKLEDGDIVNIDVTVYY-------------KGVHGDLNETYFVG-- 251 (305)
Q Consensus 205 -------v~ts-~n~~~~Hg~p~~----------r~L~~GDiV~iDv~~~~-------------~GY~~D~~RT~~vG-- 251 (305)
-+-| .|..+.|..|+- ++-..||+=.-|+--.. +-|..+-+-++.+|
T Consensus 177 ~~Ll~~A~~~GL~~SFFlH~aPNLGrd~~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~ 256 (381)
T PF09506_consen 177 NELLEKAEAQGLENSFFLHYAPNLGRDANGREILKPATAGDVGTTDIQFMLRGAIKEAGLLVLLNRYIAQRTGKAPLGED 256 (381)
T ss_pred HHHHHHHHhCCcccceEEEeCCCCCCCCCcceeecccccCCCCchhhhhhhhhhhhhcchhHHHHHHHHhhcCCCCccCc
Confidence 1223 356678888851 23345776666654333 33555555555555
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHH
Q 021917 252 ----NADEASRQLVQCTYECLEKAIS 273 (305)
Q Consensus 252 ----~~~~e~~~l~~~~~ea~~~ai~ 273 (305)
..+..+..+++.+.+......-
T Consensus 257 FNvR~AP~~h~~Ll~L~~~~i~~~~M 282 (381)
T PF09506_consen 257 FNVRQAPKSHQELLDLCKENIPPEQM 282 (381)
T ss_pred cccccCchhHHHHHHHHHhhCCHHHC
Confidence 5788888888888877665543
No 161
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=22.59 E-value=2.7e+02 Score=21.75 Aligned_cols=35 Identities=17% Similarity=0.484 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 021917 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA 185 (305)
Q Consensus 150 ~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~ 185 (305)
.||.-.+-.. -|+.+.+.|+|++|..||.+++...
T Consensus 27 KIRDNqKRV~-LLdNL~~YI~~~Ms~edi~~II~nM 61 (95)
T PF04363_consen 27 KIRDNQKRVL-LLDNLSDYIKPDMSIEDIRAIIENM 61 (95)
T ss_pred HHhhhHHHHH-HHHHHHHHccCCCCHHHHHHHHHHH
Confidence 5565555443 3888999999999999999888754
No 162
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=22.25 E-value=63 Score=30.77 Aligned_cols=45 Identities=18% Similarity=0.456 Sum_probs=31.9
Q ss_pred ccccccccccCCccc----cccchhhhcCCCCCCCcccChhhhhhchhHHHHHh
Q 021917 9 ETTSLSCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (305)
Q Consensus 9 ~~~~~~c~~c~~~~~----l~cp~c~~~~~~~~~~~fc~q~cfk~~w~~hk~~h 58 (305)
...-..|..|..+.. ++|+-|...-.+ .|+.+|....=.-+..-|
T Consensus 240 ~~~~~~C~~C~~p~~~~~~~~~~~~~~~~~~-----~C~~ec~~~~~~r~~e~~ 288 (308)
T COG1054 240 EGDHTPCDNCRNPLCNLLFISCEYCEGKYCG-----CCSDECSEEPRLRYEERQ 288 (308)
T ss_pred CCCcchhhhcCCCCCHHHhhcchhhhcccCC-----CccHHHhhhhhhHHHHHH
Confidence 333467989999888 788888865554 899999877644444433
No 163
>PRK05423 hypothetical protein; Provisional
Probab=22.19 E-value=1.3e+02 Score=23.81 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 021917 160 EVLDAAARMIRPGVTTDEIDRVVHEAT 186 (305)
Q Consensus 160 ~~l~~~~~~i~pGvTe~EI~~~v~~~~ 186 (305)
..|+.+.+.|+||+|..||..++..+-
T Consensus 43 lLLdNL~~YIk~~Ms~e~i~~II~nMr 69 (104)
T PRK05423 43 LLLDNLSDYIKPGMSIEEIQGIIANMK 69 (104)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999887553
No 164
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.14 E-value=37 Score=33.16 Aligned_cols=21 Identities=33% Similarity=0.824 Sum_probs=17.7
Q ss_pred cccccCCccc---cccchhhhcCC
Q 021917 14 SCVRCGKPAH---LQCPKCMELKL 34 (305)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~~~~~ 34 (305)
.|+.||-... -|||.|.+-+.
T Consensus 2 ~c~~cg~~~~~~~g~cp~c~~w~~ 25 (372)
T cd01121 2 VCSECGYVSPKWLGKCPECGEWNT 25 (372)
T ss_pred CCCCCCCCCCCccEECcCCCCcee
Confidence 5999999777 78999987664
No 165
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.03 E-value=6.7e+02 Score=24.35 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=42.1
Q ss_pred CCCCCCCEEEEEeeceeCc-----------EEeceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 021917 221 RKLEDGDIVNIDVTVYYKG-----------VHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVIN 289 (305)
Q Consensus 221 r~L~~GDiV~iDv~~~~~G-----------Y~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~ 289 (305)
..+++||.|.+.=++--.| +-.++..-.. +.............+++..++-+++ ..|=+-|.++..
T Consensus 159 ~~~~~GD~vI~tg~~g~hga~ila~~~~~~l~~~l~sD~~--~~~~~~~~~l~~~~~~~~~~vtAMh-DaTrGGla~aLn 235 (339)
T COG0309 159 SGARPGDAVIVTGTIGIHGASILAHRFGEELETELGSDCA--PLAKLVKALLSVVGEALAAAVTAMH-DATRGGLAGALN 235 (339)
T ss_pred CCCCCCCEEEEcCChhHHHHHHHHHhcchhhccchhhhHH--HHHHHHHHHhhcchhhhhhhhhhcc-CCchhHHHHHHH
Confidence 3589999999744332222 1111111100 1223333444444444444444566 455566889999
Q ss_pred HHHHhcCCcee
Q 021917 290 RHATMSGFSVE 300 (305)
Q Consensus 290 ~~~~~~G~~vv 300 (305)
+++++.|.++.
T Consensus 236 EmA~aSgvgi~ 246 (339)
T COG0309 236 EMAEASGVGIS 246 (339)
T ss_pred HHHHHcCCeEE
Confidence 99999998765
No 166
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.02 E-value=21 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.516 Sum_probs=24.2
Q ss_pred CCCCCccccccccccccCCccc--cccchhhhcCCCCCCCcccChhhh
Q 021917 2 AGGSDAAETTSLSCVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCF 47 (305)
Q Consensus 2 ~~~~~~~~~~~~~c~~c~~~~~--l~cp~c~~~~~~~~~~~fc~q~cf 47 (305)
|..---|..+..+|..|++|-+ .+=-.|-..- -+||.-|-
T Consensus 2 a~~r~Ka~lp~KICpvCqRPFsWRkKW~~cWDeV------KyCSeRCr 43 (54)
T COG4338 2 AARRPKATLPDKICPVCQRPFSWRKKWARCWDEV------KYCSERCR 43 (54)
T ss_pred CccCcccccchhhhhhhcCchHHHHHHHHHHHHH------HHHHHHHH
Confidence 3333445566778888888877 3344444432 27888774
No 167
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.73 E-value=2.3e+02 Score=21.98 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=40.9
Q ss_pred cccCCHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 021917 140 VEIKTPDQIERMRETCRI----AREVLDAAARMIRPGVTTDEIDRVVHEATITAG 190 (305)
Q Consensus 140 r~vKs~~EIe~mR~A~~i----a~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G 190 (305)
..+++++|.|.++-+... --++++.+.+.++-++.-..|-..+...+....
T Consensus 20 k~~Ls~eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~~ 74 (88)
T PF12926_consen 20 KKVLSAEEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGSR 74 (88)
T ss_pred HhccCHHHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcccc
Confidence 368899999888877653 347899999999999999999988887666543
No 168
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=21.50 E-value=1.7e+02 Score=21.06 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=22.6
Q ss_pred ceeeecCCCcc-ccCCCCCCCCCCCCEEEEEeec
Q 021917 203 KSCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTV 235 (305)
Q Consensus 203 ~~v~ts~n~~~-~Hg~p~~r~L~~GDiV~iDv~~ 235 (305)
+.++.-.|..+ +-..+++..|++||.|-| +..
T Consensus 31 ~~vav~vN~~iv~r~~w~~~~L~~gD~iEI-v~~ 63 (67)
T PRK07696 31 KIVVVERNKDILQKDDHTDTSVFDGDQIEI-VTF 63 (67)
T ss_pred CeEEEEECCEEeCHHHcCceecCCCCEEEE-EEE
Confidence 35777788655 444567788999999987 443
No 169
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.48 E-value=42 Score=27.05 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=15.7
Q ss_pred cccccccCCccc------cccchhhhcCC
Q 021917 12 SLSCVRCGKPAH------LQCPKCMELKL 34 (305)
Q Consensus 12 ~~~c~~c~~~~~------l~cp~c~~~~~ 34 (305)
...|..||+... ..||.|....+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 70 ECWCETCQQYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEEcccCCCeeecCCccCCcCcCcCCCCc
Confidence 345888988433 45999986553
No 170
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=21.35 E-value=3.4e+02 Score=26.59 Aligned_cols=131 Identities=16% Similarity=0.240 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCC-CCC--CCCCce---------------
Q 021917 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY--HFFPKS--------------- 204 (305)
Q Consensus 143 Ks~~EIe~mR~A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~psp-lny--~~fp~~--------------- 204 (305)
-|+.||+.+-++-...+..+..-...+-|..++.||...++.++.+.-..|+- ||. .-++.-
T Consensus 103 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~aVldt~~SPTiNlN~lf~~v~~d~~~~~~LQ~~~~~lM 182 (389)
T TIGR02399 103 VSKEEVDFLAAVPDLMRPSLEQIVKKIFPNLVQEEIQTHASKSVLDTRFSPTINLNSLFDLVKDDSEIRKILQKSFEDLM 182 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCccchHHHHHHccchHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999988776641 221 001110
Q ss_pred -------eeec-CCCccccCCCC---------CCCCCCCCEEEEEeeceeC-------------cEEec------eeeEE
Q 021917 205 -------CCTS-VNEVICHGIPD---------SRKLEDGDIVNIDVTVYYK-------------GVHGD------LNETY 248 (305)
Q Consensus 205 -------v~ts-~n~~~~Hg~p~---------~r~L~~GDiV~iDv~~~~~-------------GY~~D------~~RT~ 248 (305)
-+-| .|..+.|..|+ -++-..||+=.-|+--... -|..+ +.++|
T Consensus 183 ~~Ll~~A~~~GL~~SFFlH~aPNLG~d~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~F 262 (389)
T TIGR02399 183 NELMYKAKTQGLENSFFLHIAPNLGSDNGNEIIKLASKGDIGTTDIQFMLKGAVKEAGVLFLLNKFIYDSTGIAPLGRNF 262 (389)
T ss_pred HHHHHHHHhCCcccceEEEeCCcCCCccccEeecccCCCCCCchhhHHHhcchhhhhhHHHHHHHHHHhccCCCCCCCCC
Confidence 1223 35667888885 1234567777777654432 34444 44444
Q ss_pred EecCCCHHHHHHHHHHHHHHHHHHH
Q 021917 249 FVGNADEASRQLVQCTYECLEKAIS 273 (305)
Q Consensus 249 ~vG~~~~e~~~l~~~~~ea~~~ai~ 273 (305)
-|-+.+..+..+++.+.+......-
T Consensus 263 NvR~AP~~h~~Ll~L~~~~i~~~~M 287 (389)
T TIGR02399 263 NFRDAPKSHQELLNLCKKHIKPEDM 287 (389)
T ss_pred ccccCCccHHHHHHHHHhcCCHHHC
Confidence 4445788888888888877766553
No 171
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=21.20 E-value=1.6e+02 Score=16.54 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=15.2
Q ss_pred CCCCCEEEEEeeceeCcEEecee
Q 021917 223 LEDGDIVNIDVTVYYKGVHGDLN 245 (305)
Q Consensus 223 L~~GDiV~iDv~~~~~GY~~D~~ 245 (305)
+++||.|.| +...+.|+.+-+.
T Consensus 2 ~~~G~~V~I-~~G~~~g~~g~i~ 23 (28)
T smart00739 2 FEVGDTVRV-IAGPFKGKVGKVL 23 (28)
T ss_pred CCCCCEEEE-eECCCCCcEEEEE
Confidence 678999999 4455777665443
No 172
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.33 E-value=44 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.922 Sum_probs=14.7
Q ss_pred cccccccCCc-----cc-------cccchhhhcCC
Q 021917 12 SLSCVRCGKP-----AH-------LQCPKCMELKL 34 (305)
Q Consensus 12 ~~~c~~c~~~-----~~-------l~cp~c~~~~~ 34 (305)
...| .||.. .. +.||.|....+
T Consensus 70 ~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~ 103 (124)
T PRK00762 70 EIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRA 103 (124)
T ss_pred eEEe-eCcCcccccccchhccccCCcCcCCCCCCC
Confidence 3569 89976 11 56999986543
No 173
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.31 E-value=1.4e+02 Score=26.83 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=17.2
Q ss_pred CccccCCCC--CCCCCCCCEEEEEeec
Q 021917 211 EVICHGIPD--SRKLEDGDIVNIDVTV 235 (305)
Q Consensus 211 ~~~~Hg~p~--~r~L~~GDiV~iDv~~ 235 (305)
+.++||-++ +-.+..++++.||+|.
T Consensus 111 ~givHGDLTtsNiIl~~~~i~~IDfGL 137 (204)
T COG3642 111 AGIVHGDLTTSNIILSGGRIYFIDFGL 137 (204)
T ss_pred cCeecCCCccceEEEeCCcEEEEECCc
Confidence 346777443 4456777799999995
No 174
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=20.16 E-value=68 Score=22.78 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=16.5
Q ss_pred ccccccCCccc-cccchhhhcCC
Q 021917 13 LSCVRCGKPAH-LQCPKCMELKL 34 (305)
Q Consensus 13 ~~c~~c~~~~~-l~cp~c~~~~~ 34 (305)
++|..||.-+- .+||.|-..-.
T Consensus 6 r~C~~CgvYTLk~~CP~CG~~t~ 28 (56)
T PRK13130 6 RKCPKCGVYTLKEICPVCGGKTK 28 (56)
T ss_pred eECCCCCCEEccccCcCCCCCCC
Confidence 67988988554 88999876544
No 175
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=20.11 E-value=2.6e+02 Score=23.93 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC
Q 021917 154 TCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192 (305)
Q Consensus 154 A~~ia~~~l~~~~~~i~pGvTe~EI~~~v~~~~~~~G~~ 192 (305)
+..++.++...+......+++..||..+|.+.+.+.|-.
T Consensus 84 ~~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~~~~ 122 (154)
T PRK00464 84 IEAAVSRIERQLRASGEREVPSKEIGELVMEELKKLDEV 122 (154)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCE
Confidence 334556666666655556899999999999999998754
Done!