RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021917
(305 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 130 bits (327), Expect = 8e-37
Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S +
Sbjct: 1 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 60
Query: 200 F-FPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
+PKS C S+NEV+CHGIP D++ L+DGDIVNIDVTV G HGD ++ + VG
Sbjct: 61 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 120
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299
+L + T E L A+ +VKPG+ REIG I + GFSV
Sbjct: 121 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSV 162
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 105 bits (262), Expect = 1e-27
Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ IKTP +IE+M++ + L ++I PG T +++ +V E P+ Y
Sbjct: 2 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYG 61
Query: 200 FFPKSCCTSVNEVICHGI-PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
+ + C SVNE + HG+ + ++GDIV++DV Y+G++GD TY VG DE +
Sbjct: 62 GYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGK 121
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299
+LV+ T E LEKAI ++KPG+R ++ I GF+V
Sbjct: 122 ELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNV 162
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 92.3 bits (228), Expect = 6e-23
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Query: 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFP 202
KT ++IE + + C IA + + AA I G E+ V G +
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIAS 60
Query: 203 KSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQ 262
+ HG+ +++E GD+V ID+ Y + D+ T VG+ +E R++ +
Sbjct: 61 GHRSA-----LPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYE 115
Query: 263 CTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298
E ++A+ KPG+ +E+ + G+
Sbjct: 116 IVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG 151
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 90.8 bits (224), Expect = 9e-22
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 4/164 (2%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
++ + + RE R+V I+PG+T EI + + +
Sbjct: 49 LDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGL 108
Query: 200 FFPKSCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FP C + D+ L+ DI ID + G D F +
Sbjct: 109 AFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIID---CAFTVTFNPKYD 165
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVEIK 302
L++ + I VR ++GE I ++ K
Sbjct: 166 TLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGK 209
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 88.3 bits (217), Expect = 4e-21
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
+KT ++++ ++E I +V + +PG+TT E+D + E G +P++ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE-ASRQL 260
P C SVNE + HGIP R + +GD+VNIDV+ G + D ++ VG +D+ +++
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 261 VQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294
E AI+ VKPG + IG+ ++ A
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQ 156
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 84.0 bits (206), Expect = 1e-19
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IK+ ++ +R RIA A + V E+ +A + A +
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQL 260
+ +N H +RK+ GDI++++ G + L T F+ + + +L
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 121
Query: 261 VQCTYEC 267
Q E
Sbjct: 122 WQVNVEV 128
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 80.9 bits (198), Expect = 2e-18
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
Query: 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS 204
P++I +R I A RPG+ ++ +H G Y +
Sbjct: 2 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA-----RYPSYNTI 56
Query: 205 CCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQC 263
+ N I H + ++ DGD+V ID YKG GD+ T+ V G +A R++
Sbjct: 57 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 116
Query: 264 TYECLEKAISIVKPGVRFREIGEVINRHAT 293
E LE ++ + +PG E+ + R
Sbjct: 117 VLESLETSLRLYRPGTSILEVTGEVVRIMV 146
Score = 25.4 bits (54), Expect = 9.1
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSG 296
R+ + T +A+ +PG+ + I+ G
Sbjct: 9 RRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHG 47
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 72.0 bits (175), Expect = 2e-15
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
E++ + IA++V + A ++ RPG+ E+ + + +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIME--------LGGKPAFPVNL 54
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
S+NE+ H P D+ L++GD + IDV V+ G D T VG + +L++
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEE---DELMEAA 111
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299
E L AIS+ + GV +E+G+ I GF
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKRGFKP 146
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 40.4 bits (94), Expect = 7e-06
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 9 ETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
E +S SC CG+ A C C A +C C W H +
Sbjct: 5 EDSSESCWNCGRKASETCSGC-------NTARYCGSFCQHKDWEKHHHI 46
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 39.2 bits (91), Expect = 1e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 14 SCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
SCV CG+ A +C C +C+ C + W H+ +
Sbjct: 1 SCVNCGREAMSECTGCH-------KVNYCSTFCQRKDWKDHQHI 37
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId:
9606]}
Length = 47
Score = 35.8 bits (82), Expect = 3e-04
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 6 DAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
+A C C A +C +C + +C ++C W H
Sbjct: 2 EAVAPERPRCAYCSAEASKRCSRC-------QNEWYCCRECQVKHWEKHGKT 46
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 26.8 bits (59), Expect = 1.2
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 106 PISSKLTVPAYIELPDWALDG---TPKVEPN---SDLQHVVEIKTPDQIERMR 152
P+S K+ VP + +W L+G + S ++ + T + +
Sbjct: 1 PVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQK 53
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 25.8 bits (57), Expect = 1.6
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 198 YHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTV 235
+ K ++N + + +L+ DIV I V+V
Sbjct: 40 HTDLGKGFLYAINARTKRRVGEDYELQFNDIVKI-VSV 76
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 223
Score = 27.5 bits (60), Expect = 2.0
Identities = 17/139 (12%), Positives = 28/139 (20%), Gaps = 4/139 (2%)
Query: 84 KKGQART--PKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGT--PKVEPNSDLQHV 139
+K AR P +R + L A PK E + + +
Sbjct: 43 QKPAARNALRDTPLDPERTVVRINAGGTADQARDLEALAGTAYTTVMLPKAESAAQVIEL 102
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+E R A + G + G Y +
Sbjct: 103 APRDVIALVETARGAVCAAEIAAADPTVGMMWGAEDLIATLGGSSSRRADGAYRDVARHV 162
Query: 200 FFPKSCCTSVNEVICHGIP 218
S +
Sbjct: 163 RSTILLAASAFGRLALDAV 181
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV
{Lactobacillus delbrueckii [TaxId: 1584]}
Length = 272
Score = 27.3 bits (59), Expect = 2.1
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMI----RPGVTTDEIDRVVHEATITAG 190
DL+ ++ I + + +E E + + +DA + + R G T+ AG
Sbjct: 19 DLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRVNFGAG 78
Query: 191 GYPSPLNYHF 200
+ H
Sbjct: 79 DKRLGIIGHM 88
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha,
PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.8 bits (57), Expect = 2.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 227 DIVNIDVTVYYKGVHGDL 244
I +DV + Y HGDL
Sbjct: 38 QIPGLDVLLGYTDAHGDL 55
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 26.6 bits (58), Expect = 2.7
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 268 LEKAISIVKP-GVRFREIGEVINR 290
+E+ ++KP GV+ IGEVI R
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICR 24
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 26.2 bits (57), Expect = 4.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 146 DQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA 185
R+ I R+VL++ + I+R+V EA
Sbjct: 161 PTPGDRRQFKEIYRDVLNSL------PLDEATINRIVEEA 194
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 25.6 bits (55), Expect = 4.6
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 7/101 (6%)
Query: 49 ASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLP--HFDWTGTLRPYP 106
+ + S + G + G K + + P
Sbjct: 21 PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML 80
Query: 107 ISSK--LTVP---AYIELPDWALDGTPKVEPNSDLQHVVEI 142
K L +P AY + G+ + P S L +E
Sbjct: 81 TGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121
>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB
{Streptococcus mutans [TaxId: 1309]}
Length = 119
Score = 25.5 bits (56), Expect = 5.2
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 148 IERMRETCRIAREVLDAA----ARMI-RP 171
++ + C AR + R+I RP
Sbjct: 72 LDELYRICEYARSITLERPALLGRIIARP 100
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 26.3 bits (58), Expect = 5.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 279 VRFREIGEVINRHATMSGFS 298
VRF I ++IN S FS
Sbjct: 469 VRFARINQIINED-LHSVFS 487
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
[TaxId: 2336]}
Length = 161
Score = 25.3 bits (55), Expect = 7.8
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 268 LEKAISIVK-PGVRFREI---GEVINRHATMSG 296
L+ AI + K + R GE+I+ ++G
Sbjct: 126 LDDAIRMKKKYRLNTRIATLDGELISGRGAITG 158
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 24.5 bits (53), Expect = 8.1
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 221 RKLEDGDIVNIDVTVYYKG 239
+E D V ID T G
Sbjct: 13 GAVEAEDRVTIDFTGSVDG 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.419
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,204,057
Number of extensions: 57484
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 32
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)