BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021919
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 112/263 (42%), Gaps = 33/263 (12%)
Query: 8 LESP-LERFTAVVAWSISM------NRPPVFGS--APYNPVLGE--------THHVSRGN 50
+ESP L R AV W IS +R GS P NP LGE H G
Sbjct: 78 VESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGE 137
Query: 51 LNILLEQVSHHPPVTALHATDEKENIEIIWCQHPAPKFYGA-SVEAEVHGRRQLKLLNHN 109
+L EQVSHHPPVTA ++K +++ F + + + G L + +
Sbjct: 138 TVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDI--KD 195
Query: 110 ETYEMNSPKLCIRFLPV--PGADWVGNVKIKCYETGLEAELFYKANPFIALRRNHRAVKG 167
E+Y + P L I + V P + G I+ TGL + + + + ++N + K
Sbjct: 196 ESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKN--SFKA 252
Query: 168 KIYNSSSS-----KILYEIDGHWDRTVSLKDVNNG-KSTIIYNAKEVLTGLKAPIVKDLE 221
+IY S K LY I G W + + N +S + Y+A + + VK LE
Sbjct: 253 RIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPA--EHLNVKPLE 310
Query: 222 EMWPSESAAVWSEVSQYIMRQDW 244
E P ES W +V+ I D+
Sbjct: 311 EQHPLESRKAWYDVAGAIKLGDF 333
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 112/263 (42%), Gaps = 33/263 (12%)
Query: 8 LESP-LERFTAVVAWSISM------NRPPVFGS--APYNPVLGE--------THHVSRGN 50
+ESP L R AV W IS +R GS P NP LGE H G
Sbjct: 76 VESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGE 135
Query: 51 LNILLEQVSHHPPVTALHATDEKENIEIIWCQHPAPKFYGA-SVEAEVHGRRQLKLLNHN 109
+L EQVSHHPPVTA ++K +++ F + + + G L + +
Sbjct: 136 TVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDI--KD 193
Query: 110 ETYEMNSPKLCIRFLPV--PGADWVGNVKIKCYETGLEAELFYKANPFIALRRNHRAVKG 167
E+Y + P L I + V P + G I+ TGL + + + + ++N + K
Sbjct: 194 ESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKN--SFKA 250
Query: 168 KIYNSSSS-----KILYEIDGHWDRTVSLKDVNNG-KSTIIYNAKEVLTGLKAPIVKDLE 221
+IY S K LY I G W + + N +S + Y+A + + VK LE
Sbjct: 251 RIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPA--EHLNVKPLE 308
Query: 222 EMWPSESAAVWSEVSQYIMRQDW 244
E P ES W +V+ I D+
Sbjct: 309 EQHPLESRKAWYDVAGAIKLGDF 331
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 108/263 (41%), Gaps = 36/263 (13%)
Query: 8 LESP-LERFTAVVAWSISM------NRPPVFGS--APYNPVLGE--------THHVSRGN 50
+ESP L R AV W IS +R GS P NP LGE H G
Sbjct: 49 VESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGE 108
Query: 51 LNILLEQVSHHPPVTALHATDEKENIEIIWCQHPAPKFYGA-SVEAEVHGRRQLKLLNHN 109
+L EQVSHHPPVTA ++K +++ F + + + G L + +
Sbjct: 109 TVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDI--KD 166
Query: 110 ETYEMNSPKLCIRFLPV--PGADWVGNVKIKCYETGLEAELFYKANPFIALRRNHRAVKG 167
E+Y + P L I + V P + G I+ TGL + F + + K
Sbjct: 167 ESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVI-----EFSGVDGKKNSFKA 220
Query: 168 KIYNSSSS-----KILYEIDGHWDRTVSLKDVNNG-KSTIIYNAKEVLTGLKAPIVKDLE 221
+IY S K LY I G W + + N +S + Y+A + + VK LE
Sbjct: 221 RIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPA--EHLNVKPLE 278
Query: 222 EMWPSESAAVWSEVSQYIMRQDW 244
E P ES W +V+ I D+
Sbjct: 279 EQHPLESRKAWYDVAGAIKLGDF 301
>pdb|3H5O|A Chain A, The Crystal Structure Of Transcription Regulator Gntr From
Chromobacterium Violaceum
pdb|3H5O|B Chain B, The Crystal Structure Of Transcription Regulator Gntr From
Chromobacterium Violaceum
Length = 339
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 30 VFGSAPYNPVLGETHHVSRGNLNILLEQVSHHPPVTALHATDEKENIEIIWCQHPAPKFY 89
V +A Y ++G +H+ + L +L + H P + E E I QH P Y
Sbjct: 87 VLDAAGYQXLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQHALPVVY 146
>pdb|2IWA|A Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya.
pdb|2FAW|A Chain A, Crystal Structure Of Papaya Glutaminyl Cyclase
pdb|2FAW|B Chain B, Crystal Structure Of Papaya Glutaminyl Cyclase
Length = 266
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 164 AVKGKI-YNSSSSKILYEIDGHWDRTVSLKDVN-NGKSTIIYNAKEVLTG 211
A GKI Y S + ILYEID H + + +V NG I N E + G
Sbjct: 113 ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162
>pdb|2X9M|A Chain A, Hendra Virus Attachment Glycoprotein
pdb|2X9M|B Chain B, Hendra Virus Attachment Glycoprotein
pdb|2X9M|C Chain C, Hendra Virus Attachment Glycoprotein
pdb|2X9M|D Chain D, Hendra Virus Attachment Glycoprotein
Length = 420
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 155 FIALRRNHRAVKG--KIYNSSSSKILYEIDGHWDRTVSLKDVN 195
FI + N + KIYNS + Y+ WD + L DV+
Sbjct: 244 FIEIADNRLTIGSPSKIYNSLGQPVFYQASYSWDTMIKLGDVD 286
>pdb|2VSK|A Chain A, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|C Chain C, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 416
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 155 FIALRRNHRAVKG--KIYNSSSSKILYEIDGHWDRTVSLKDVN 195
FI + N + KIYNS + Y+ WD + L DV+
Sbjct: 241 FIEIADNRLTIGSPSKIYNSLGQPVFYQASYSWDTMIKLGDVD 283
>pdb|1J9A|A Chain A, Oligoribonuclease
Length = 184
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 46 VSRGNLNILLEQVSHHPPVTALHATDEKENIEIIWCQ 82
V+ NLNIL E PV A+H +DE N WCQ
Sbjct: 34 VTDKNLNILAE-----GPVLAVHQSDELLNKXNDWCQ 65
>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With
10z-Hymenialdisine
Length = 339
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 99 GRRQLKLLNHNETYEMNSPKLCIRFLPVPGADWV---GNVKIKCYETGLEAELFYKANPF 155
R ++++L H T + NS C++ L +W G++ I GL F K N F
Sbjct: 58 ARSEIQVLEHLNTTDPNSTFRCVQML-----EWFEHHGHICIVFELLGLSTYDFIKENGF 112
Query: 156 IALRRNH 162
+ R +H
Sbjct: 113 LPFRLDH 119
>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In
Complex With A Novel Substituted Indole Inhibitor
Length = 339
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 99 GRRQLKLLNHNETYEMNSPKLCIRFLPVPGADWV---GNVKIKCYETGLEAELFYKANPF 155
R ++++L H T + NS C++ L +W G++ I GL F K N F
Sbjct: 58 ARSEIQVLEHLNTTDPNSTFRCVQML-----EWFEHHGHICIVFELLGLSTYDFIKENGF 112
Query: 156 IALRRNH 162
+ R +H
Sbjct: 113 LPFRLDH 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,724,830
Number of Sequences: 62578
Number of extensions: 327019
Number of successful extensions: 644
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 10
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)