Query 021919
Match_columns 305
No_of_seqs 147 out of 1060
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01237 Oxysterol_BP: Oxyster 100.0 8E-81 1.7E-85 592.0 23.1 283 1-290 42-348 (354)
2 KOG2209 Oxysterol-binding prot 100.0 5.3E-77 1.2E-81 534.1 10.4 294 1-299 84-442 (445)
3 KOG2210 Oxysterol-binding prot 100.0 3.2E-70 6.9E-75 512.6 23.8 298 1-303 78-386 (392)
4 KOG1737 Oxysterol-binding prot 100.0 2.8E-69 6.1E-74 540.7 22.1 294 1-301 474-798 (799)
5 PF14714 KH_dom-like: KH-domai 33.8 45 0.00098 24.7 2.8 21 52-72 29-49 (80)
6 PRK06568 F0F1 ATP synthase sub 32.2 71 0.0015 26.9 4.1 35 229-263 23-63 (154)
7 PF14038 YqzE: YqzE-like prote 32.0 20 0.00043 24.7 0.6 17 262-278 28-44 (54)
8 PF02151 UVR: UvrB/uvrC motif; 31.5 85 0.0018 19.3 3.4 24 236-259 12-35 (36)
9 COG2154 Pterin-4a-carbinolamin 27.6 21 0.00045 27.9 0.0 18 51-68 49-66 (101)
10 PF06886 TPX2: Targeting prote 23.7 1.6E+02 0.0035 20.4 4.0 31 234-264 3-33 (57)
11 PF14981 FAM165: FAM165 family 23.4 1.2E+02 0.0027 20.1 3.1 16 251-266 32-47 (51)
12 PRK06569 F0F1 ATP synthase sub 23.0 1.2E+02 0.0027 25.5 3.9 31 229-259 29-65 (155)
13 PRK14471 F0F1 ATP synthase sub 21.3 1.2E+02 0.0027 25.2 3.7 33 228-260 26-64 (164)
14 PRK08476 F0F1 ATP synthase sub 20.5 1.4E+02 0.0031 24.4 3.8 33 229-261 26-64 (141)
No 1
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=8e-81 Score=591.96 Aligned_cols=283 Identities=33% Similarity=0.582 Sum_probs=227.0
Q ss_pred CcccccCCCCHHHHHHHHHHHhhhccCCCc-cccCCCCCCCCCeEEeec-CcEEEEeeecccCCceeEEEEEeCCCCEEE
Q 021919 1 MLSKCNSLESPLERFTAVVAWSISMNRPPV-FGSAPYNPVLGETHHVSR-GNLNILLEQVSHHPPVTALHATDEKENIEI 78 (305)
Q Consensus 1 lL~~Aa~~~dp~eRm~~V~~f~iS~~~~~~-~~~KPfNPiLGETf~~~~-~~~~~iaEQVSHHPPisA~~~~~~~~g~~~ 78 (305)
||++||.++||++||++|++|+||+++... ..+|||||||||||++.. ++++|+||||||||||||||+++ +||++
T Consensus 42 lL~~Aa~~~d~~eR~~~V~~f~~S~~~~~~~~~~KPfNPiLGETfe~~~~~~~~~~aEQVSHHPPisa~~~~~--~~~~~ 119 (354)
T PF01237_consen 42 LLDKAAEEDDPLERMLYVAAFALSSYSSTPGRTKKPFNPILGETFELVRPDGTRFIAEQVSHHPPISAFHAEG--RGWKF 119 (354)
T ss_dssp HHHGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE---TT-EE--TT-T-EEEEEEEEETTTTEEEEEEEE--TTEEE
T ss_pred HHhccCCCCCHHHHHHHHHHHHHhhhhhhcCCCCcCcCCCCcceeeeccCceEEEEEecccCCCCceEEEEEc--CCEEE
Confidence 689999999999999999999999977642 237999999999999876 88999999999999999999999 69999
Q ss_pred EEEEeeccEEEeeEEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCCceEEEEEeeCCcc
Q 021919 79 IWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETGLEAELFYKANPFI 156 (305)
Q Consensus 79 ~g~~~~~~kF~G~sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg~~a~i~F~~~~~~ 156 (305)
+|++.++++|+||||++.+.|.++|+|.++||+|+|++|+++++ ++|++|+|+.|+|.|+|.+||++|+|+|+++|||
T Consensus 120 ~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~~p~~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f 199 (354)
T PF01237_consen 120 YGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWTKPTTYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWF 199 (354)
T ss_dssp EEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE--SEEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSST
T ss_pred EEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEecCcEEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCcc
Confidence 99999999999999999999999999998899999999999999 8999999999999999999999999999999994
Q ss_pred cccCcceEEEEEEEeCCCCeeEEEEEEEecceEEEEEcC----CCceEEEEecccccCCC-----CCccccCC-------
Q 021919 157 ALRRNHRAVKGKIYNSSSSKILYEIDGHWDRTVSLKDVN----NGKSTIIYNAKEVLTGL-----KAPIVKDL------- 220 (305)
Q Consensus 157 ~~~~~~~~v~G~I~~~~~~~~~~~i~G~W~~~l~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~------- 220 (305)
+|+.+.|+|.|++. ++++++.|+|+||+.|.+.+.+ +++..++|++++.+... ++.++.++
T Consensus 200 --~~~~~~v~G~I~~~-~~~~~~~i~G~W~~~i~~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~~~~ 276 (354)
T PF01237_consen 200 --SGKSNEVEGKIYDS-KGKPIYKISGKWDEEIYIKDVKNDSDTGESKLLWDANPLPPNPKKYYGFTQFAIPLNELTPEL 276 (354)
T ss_dssp --SSSTTEEEEEEESS-GGG-SEEEEEETTSEEEEEETT----GGGEEEEEETTTS-SS--B----------G-------
T ss_pred --cccceeeEEEEEEc-cCceeEEeeeeeCCeEEEEeccccccCCCceEEEECCCCcccccceecccccccccccccccc
Confidence 57789999999995 6889999999999999999988 67889999998753211 22344455
Q ss_pred -CCCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeeEEecCCC---CceEEc
Q 021919 221 -EEMWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCNKE---RGWDCS 290 (305)
Q Consensus 221 -~~~~ptdSr~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~r~~~~~~w~P~~F~~~~~~~---~~W~~~ 290 (305)
+.++|||| ||++|++||++||+++|+++|.+|||+||++||+|+++|++|+||||+++.++. ..|.|+
T Consensus 277 ~~~~~ptDS--r~R~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~R~~~~~~w~Pr~F~~~~d~~~~~~~w~~~ 348 (354)
T PF01237_consen 277 EEKLPPTDS--RWRPDQRALENGDIDKAQEEKKRLEEKQRADRKERKEKGEEWKPRWFEKVEDPSTEEEEWVYK 348 (354)
T ss_dssp G-GS-TTBH--HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHCT--GGGSSEEEEE-SSS--T-----
T ss_pred cccCCchhc--cchHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCeEEECCCCCCcccccccc
Confidence 37899999 677999999999999999999999999999999999999999999999997542 236554
No 2
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-77 Score=534.11 Aligned_cols=294 Identities=28% Similarity=0.428 Sum_probs=253.8
Q ss_pred CcccccCCCCHHHHHHHHHHHhhhccCCCc-cccCCCCCCCCCeEEeecC--cEEEEeeecccCCceeEEEEEeCCCCEE
Q 021919 1 MLSKCNSLESPLERFTAVVAWSISMNRPPV-FGSAPYNPVLGETHHVSRG--NLNILLEQVSHHPPVTALHATDEKENIE 77 (305)
Q Consensus 1 lL~~Aa~~~dp~eRm~~V~~f~iS~~~~~~-~~~KPfNPiLGETf~~~~~--~~~~iaEQVSHHPPisA~~~~~~~~g~~ 77 (305)
||.+||.+.||+|||.+|+|||+|...+.- ..-|||||||||||+..++ |+|||+|||||||||||||+++-++.|.
T Consensus 84 Li~kAs~~~~p~eRmqyVAAFAvsavas~weR~gKPFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~ 163 (445)
T KOG2209|consen 84 LIHKASSQSDPVERMQYVAAFAVSAVASQWERTGKPFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFI 163 (445)
T ss_pred HHHHHhhCCChHHHHHHHHHHHHHHHHHhHHHhcCCCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceE
Confidence 578999999999999999999999976532 2369999999999988765 6999999999999999999998888999
Q ss_pred EEEEEeeccEEEeeEEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCCceEEEEEeeCCc
Q 021919 78 IIWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETGLEAELFYKANPF 155 (305)
Q Consensus 78 ~~g~~~~~~kF~G~sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg~~a~i~F~~~~~ 155 (305)
+.|++.|+.+|||+||+++|.|.+.|+|+++||.|+|+.|+++|+ |+|++|||.+|+|.|.++.||+.|+++|+++|+
T Consensus 164 fhGsi~PklkFWgksvea~Pkgtitle~~k~nEaYtWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~Fk~~G~ 243 (445)
T KOG2209|consen 164 FHGSIYPKLKFWGKSVEAEPKGTITLELLKHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNFKPCGL 243 (445)
T ss_pred EeeeecccceeccceeecCCCceEEEEecccCcceeccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEecccccc
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ccccCcceEEEEEEEeCCCCeeEEEEEEEecceEEEEEcCC---------------------------------------
Q 021919 156 IALRRNHRAVKGKIYNSSSSKILYEIDGHWDRTVSLKDVNN--------------------------------------- 196 (305)
Q Consensus 156 ~~~~~~~~~v~G~I~~~~~~~~~~~i~G~W~~~l~~~~~~~--------------------------------------- 196 (305)
| ++..|.|+|.|+++ +++.++.|.|+|++.|+.++..+
T Consensus 244 ~--gk~lHkVEG~i~d~-~k~kl~~lYGkWTe~l~~cd~esf~~~~Kq~~r~~~~r~~s~~~~~see~dd~P~~ds~~v~ 320 (445)
T KOG2209|consen 244 F--GKELHKVEGHIQDK-SKKKLCALYGKWTECLYSCDPESFDAFKKQDKRNTEERKNSKQMSTSEELDDMPVPDSESVF 320 (445)
T ss_pred c--ccchhheeehhhcc-ccccchhhhccHHHHHhcCCHHHHHHHHHhhhhcchhhhhhccCCchhhccCCCCCCcceeE
Confidence 4 69999999999996 67889999999999998765520
Q ss_pred --CceEEEEecccccCCC-----CCccccCCC--------CCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 021919 197 --GKSTIIYNAKEVLTGL-----KAPIVKDLE--------EMWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKL 261 (305)
Q Consensus 197 --~~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~~ptdSr~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~ 261 (305)
..+.++|.+++.+... ++.++..|+ .++|||||+| +|++|||+|++|.|.++|+||||+||++
T Consensus 321 ~iPgSk~LW~~n~rP~n~~~~y~FT~FalsLNem~~~M~~tl~pTD~RlR--pDi~~mE~G~~D~AseeK~rlEEkQRe~ 398 (445)
T KOG2209|consen 321 IIPGSKLLWRINPRPPNSAQMYNFTSFALSLNEMDKGMESTLPPTDCRLR--PDIRAMENGNIDQASEEKKRLEEKQREA 398 (445)
T ss_pred ecCCCeEEEEecCCCCCHHHhhchhhheeehhhhccCcccccCCcccccC--chhhhhhcCCcchhHHHHHHHHHHHHHH
Confidence 0134688887743211 223333332 4799999999 9999999999999999999999999999
Q ss_pred HHHHHhcCCCceeeeeEEecCCC---CceEEcc---CCCCCCCC
Q 021919 262 LRERESAGETWVPKHFTVTCNKE---RGWDCSS---IKKVVPPA 299 (305)
Q Consensus 262 rk~r~~~~~~w~P~~F~~~~~~~---~~W~~~~---~~~~~~~~ 299 (305)
|+.|..+..+|.||||.+.+++. ..|.|.. -.+++.|.
T Consensus 399 Rk~rs~~~~dw~~rWF~~~~np~t~~~dWlYsGgYwdR~ysn~~ 442 (445)
T KOG2209|consen 399 RKNRSKSEEDWKTRWFHQGPNPYTGAQDWLYSGGYWDRNYSNCP 442 (445)
T ss_pred HhhcccccccCcchhcccCCCCCCCcccceeecCccccccccCc
Confidence 99998888899999999987643 1277654 23444443
No 3
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-70 Score=512.64 Aligned_cols=298 Identities=37% Similarity=0.562 Sum_probs=269.4
Q ss_pred CcccccCCCCHHHHHHHHHHHhhhccCCCccc-cCCCCCCCCCeEEee--------cCcEEEEeeecccCCceeEEEEEe
Q 021919 1 MLSKCNSLESPLERFTAVVAWSISMNRPPVFG-SAPYNPVLGETHHVS--------RGNLNILLEQVSHHPPVTALHATD 71 (305)
Q Consensus 1 lL~~Aa~~~dp~eRm~~V~~f~iS~~~~~~~~-~KPfNPiLGETf~~~--------~~~~~~iaEQVSHHPPisA~~~~~ 71 (305)
||..|+..+||++||+.|++|++|+++....+ +|||||||||||.+. .+.+.|+||||||||||||||+++
T Consensus 78 ll~~~~~~~~p~~R~~~VvkwylS~~~~~~~~~~~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~ 157 (392)
T KOG2210|consen 78 LLLEASSEADPLERMLAVVKWYLSGFHAGPKGRKKPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTC 157 (392)
T ss_pred hhcccccCCCHHHHhhhheeeeehhcccccccccCCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEc
Confidence 57789999999999999999999998765433 669999999999643 367999999999999999999999
Q ss_pred CCCCEEEEEEEeeccEEEeeEEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCCceEEEE
Q 021919 72 EKENIEIIWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETGLEAELF 149 (305)
Q Consensus 72 ~~~g~~~~g~~~~~~kF~G~sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg~~a~i~ 149 (305)
++.|+++.|++.++++|.|+|+.+.+.|...++|.+++|+|.+|+|.++++ ++|.+|+|+.|++.|.|++|++.+.+.
T Consensus 158 ~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~l~ll~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~~a~~~ 237 (392)
T KOG2210|consen 158 PKKGIQVDGHVWAKSKFLGNSIAVAMIGKGVLKLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGLSAILE 237 (392)
T ss_pred cccCeEEEEEEeecccccccceeEEEcCCcEEEEEecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcceeeeEe
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EeeCCcccccCcceEEEEEEEeCCCCeeEEEEEEEecceEEEEEcCCCceEEEEecccccCCCCCccccCCCCCCCCCcc
Q 021919 150 YKANPFIALRRNHRAVKGKIYNSSSSKILYEIDGHWDRTVSLKDVNNGKSTIIYNAKEVLTGLKAPIVKDLEEMWPSESA 229 (305)
Q Consensus 150 F~~~~~~~~~~~~~~v~G~I~~~~~~~~~~~i~G~W~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ptdSr 229 (305)
|..++| .+|..+.+.+.|+....++...+|+|.||+.++++..++++...+.|.... .+..+.+.|+++|.|.+||
T Consensus 238 ~~~~~f--~g~~~s~~~~~ik~~~~~~~~~~i~G~W~~~~~~k~~~~~~~~~~~d~~~~--~~~~~~v~pLeEQ~e~ESr 313 (392)
T KOG2210|consen 238 SILKPF--LGGKNSFNARSIKGPIDKKDFCSISGEWDGVMYAKYAKSGESRNFVDCKKL--PVTKPKVRPLEEQGEYESR 313 (392)
T ss_pred eccCcc--cccccccceEEEEcccccccccccceeecccEEEEEcCCCceeeccccccc--CcCCCCcCChHHcCcHHHH
Confidence 999999 568888899999976566678889999999999999987775555565553 3355688999999999999
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeeEEecCCCCceEEccCCCCCCCCCccc
Q 021919 230 AVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCNKERGWDCSSIKKVVPPAPIVV 303 (305)
Q Consensus 230 ~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~r~~~~~~w~P~~F~~~~~~~~~W~~~~~~~~~~~~~~~~ 303 (305)
++|++|++||..||++.|+++|..|||+||++||+|++.|++|+||||..++.+ +.|.|+...+=.+++|++.
T Consensus 314 rlWk~Vt~ai~~~d~~~Ate~K~~iEe~QR~~ak~ree~g~~W~pk~F~~~~~~-~~~~~~~~~~~~~~~~~~~ 386 (392)
T KOG2210|consen 314 RLWKEVTEAILAGDIEQATEEKFELEEKQRELAKKREESGEEWKPKLFKVDEDG-GDWDYRNYLPKVPDDPLVD 386 (392)
T ss_pred HHHHHHHHHHHhccHHHHhHHHhHHHHHHHHHHHHHHHhCCcceecceeEcCCC-CCccccccccCCcccccch
Confidence 999999999999999999999999999999999999999999999999998754 5699998777777777753
No 4
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-69 Score=540.68 Aligned_cols=294 Identities=27% Similarity=0.418 Sum_probs=263.7
Q ss_pred CcccccCCCCHHHHHHHHHHHhhhccCCCc-cccCCCCCCCCCeEEee--cCcEEEEeeecccCCceeEEEEEeCCCCEE
Q 021919 1 MLSKCNSLESPLERFTAVVAWSISMNRPPV-FGSAPYNPVLGETHHVS--RGNLNILLEQVSHHPPVTALHATDEKENIE 77 (305)
Q Consensus 1 lL~~Aa~~~dp~eRm~~V~~f~iS~~~~~~-~~~KPfNPiLGETf~~~--~~~~~~iaEQVSHHPPisA~~~~~~~~g~~ 77 (305)
||++|+...||++||++|++|++|+|..+. ...|||||||||||+++ ++|++||+|||||||||+|+||++. +|.
T Consensus 474 LLd~A~~~~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf~sEqVSHhPPi~A~h~es~--~w~ 551 (799)
T KOG1737|consen 474 LLDKAANYEDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRFFSEQVSHHPPISACHAESN--NWT 551 (799)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceeeeeeeeccCCCcccccccCC--Cce
Confidence 799999999999999999999999996543 34899999999999987 4589999999999999999999885 799
Q ss_pred EEEEEeeccEEEeeEEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCC-ceEEEEEeeCC
Q 021919 78 IIWCQHPAPKFYGASVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETG-LEAELFYKANP 154 (305)
Q Consensus 78 ~~g~~~~~~kF~G~sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg-~~a~i~F~~~~ 154 (305)
++|+...++||||+||.|.|.|..+|+|+++|+.|.|..|+..|+ |+|++|+++.|.|.|++++++ .+|.|.|++.|
T Consensus 552 ~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~ge~~i~n~~~~~~~c~L~F~~~~ 631 (799)
T KOG1737|consen 552 FWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYGEMEITNHTTGSDKCKLKFVKAG 631 (799)
T ss_pred eeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeeccccccccccEEEecCCCCcceeEEEEeeec
Confidence 999999999999999999999999999999999999999999999 999999999999999999999 79999999999
Q ss_pred cccccCcceEEEEEEEeCCCCeeEEEEEEEecceEEEEEcC-------CCceEEEEecccccCC-C--CCccccCC----
Q 021919 155 FIALRRNHRAVKGKIYNSSSSKILYEIDGHWDRTVSLKDVN-------NGKSTIIYNAKEVLTG-L--KAPIVKDL---- 220 (305)
Q Consensus 155 ~~~~~~~~~~v~G~I~~~~~~~~~~~i~G~W~~~l~~~~~~-------~~~~~~~~~~~~~~~~-~--~~~~~~~~---- 220 (305)
||+ .+.++|.|.|++. +|++.+.+.|+|++.|++..++ .++..++|+.++++.+ . ++.++..|
T Consensus 632 ~~~--~~~~ev~g~V~~~-s~~~~~~l~GkW~e~~~~~~~~~~~~~~~~~~~~~iWk~~~~Pkn~~y~ft~fai~LNel~ 708 (799)
T KOG1737|consen 632 YFS--RNAREVEGSVRNK-SGKKVEVLTGKWDESLYYFKVDKVGLPEPETSEKLIWKANDLPKNNKYNFTGFAIELNELT 708 (799)
T ss_pred ccC--CCcceeEEEEeCC-CCceeEEEeeeehhhhhhccccccccccCCccceeeeecCCCCCCcccccchhheecccCC
Confidence 964 4488999999995 7999999999999999974222 2456789999987652 1 23344333
Q ss_pred ----CCCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeeEEecCC-------CCceEE
Q 021919 221 ----EEMWPSESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCNK-------ERGWDC 289 (305)
Q Consensus 221 ----~~~~ptdSr~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~r~~~~~~w~P~~F~~~~~~-------~~~W~~ 289 (305)
+.++|||||+| ||+|+||+|++++|..||.+|||+||++|+.|++++.+|+||||.++.+. ++||+.
T Consensus 709 p~l~~~lpPTDSRlR--PDqr~lE~G~~~~a~~EK~rlEe~QR~~r~~re~~~~~~~prwF~~~~~~~~~~~~ng~Ywe~ 786 (799)
T KOG1737|consen 709 PHLKKLLPPTDSRLR--PDQRALENGEYDEANAEKLRLEEKQRARRRKREENGEEYEPRWFEKVKDPSTYWVYNGGYWEA 786 (799)
T ss_pred chhhccCCCCCcccC--cchhhhhccChhhhhhhhHhHHHHHHHHHHHHHhhccccccccccccCCCcceEEecCchhee
Confidence 34789999999 99999999999999999999999999999999999999999999999864 589999
Q ss_pred ccCCCCCCCCCc
Q 021919 290 SSIKKVVPPAPI 301 (305)
Q Consensus 290 ~~~~~~~~~~~~ 301 (305)
|+..+|..|.-|
T Consensus 787 r~~~d~~~~~~i 798 (799)
T KOG1737|consen 787 REKQDWKDCPDI 798 (799)
T ss_pred ecccCccccccC
Confidence 999999998765
No 5
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=33.84 E-value=45 Score=24.69 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.3
Q ss_pred EEEeeecccCCceeEEEEEeC
Q 021919 52 NILLEQVSHHPPVTALHATDE 72 (305)
Q Consensus 52 ~~iaEQVSHHPPisA~~~~~~ 72 (305)
-+++-||+..||.-+++|-.+
T Consensus 29 i~Y~tQv~~~PPtFv~f~N~~ 49 (80)
T PF14714_consen 29 IYYATQVGTRPPTFVLFVNDP 49 (80)
T ss_dssp EEEEEEEETTTTEEEEEES-C
T ss_pred EEEEEeCCCCCCEEEEEeCCc
Confidence 367889999999999998664
No 6
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=32.24 E-value=71 Score=26.87 Aligned_cols=35 Identities=9% Similarity=-0.076 Sum_probs=25.6
Q ss_pred ccccHHHHHHHHc------CChHHHHHHHHHHHHHHHHHHH
Q 021919 229 AAVWSEVSQYIMR------QDWEKASEAKKAVEEKQRKLLR 263 (305)
Q Consensus 229 r~rW~~d~~al~~------gd~~~A~~eK~~lEe~QR~~rk 263 (305)
.+.|+|.+..|+. ++++.|.+.|.+.++.+..-.+
T Consensus 23 kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~ 63 (154)
T PRK06568 23 RPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNA 63 (154)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888777764 6889999999888776554433
No 7
>PF14038 YqzE: YqzE-like protein
Probab=31.99 E-value=20 Score=24.71 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=12.1
Q ss_pred HHHHHhcCCCceeeeeE
Q 021919 262 LRERESAGETWVPKHFT 278 (305)
Q Consensus 262 rk~r~~~~~~w~P~~F~ 278 (305)
|.+|++..++|.-+||-
T Consensus 28 k~~rK~~k~p~~~rWFG 44 (54)
T PF14038_consen 28 KEERKEEKEPFSYRWFG 44 (54)
T ss_pred HHHHHhcCCcHHHHHHh
Confidence 34455567799999984
No 8
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=31.46 E-value=85 Score=19.35 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=19.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHH
Q 021919 236 SQYIMRQDWEKASEAKKAVEEKQR 259 (305)
Q Consensus 236 ~~al~~gd~~~A~~eK~~lEe~QR 259 (305)
..|.++-|++.|..-+.+|...+.
T Consensus 12 ~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 12 EEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHc
Confidence 468899999999999999987654
No 9
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=27.56 E-value=21 Score=27.95 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=15.1
Q ss_pred EEEEeeecccCCceeEEE
Q 021919 51 LNILLEQVSHHPPVTALH 68 (305)
Q Consensus 51 ~~~iaEQVSHHPPisA~~ 68 (305)
+-.+||+.-|||=|+..|
T Consensus 49 vA~~Ae~~~HHPdi~~~y 66 (101)
T COG2154 49 VAEIAEKLNHHPDIEVVY 66 (101)
T ss_pred HHHHHHHhCCCCCeEEEe
Confidence 446899999999998776
No 10
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=23.67 E-value=1.6e+02 Score=20.38 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q 021919 234 EVSQYIMRQDWEKASEAKKAVEEKQRKLLRE 264 (305)
Q Consensus 234 ~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~ 264 (305)
.|.||.+-..++..-.+|....+.++..+..
T Consensus 3 t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~ 33 (57)
T PF06886_consen 3 TDERAEERKEFDKKLEEKEKAKEAEKEEREA 33 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888889999999998887776654433
No 11
>PF14981 FAM165: FAM165 family
Probab=23.44 E-value=1.2e+02 Score=20.13 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021919 251 KKAVEEKQRKLLRERE 266 (305)
Q Consensus 251 K~~lEe~QR~~rk~r~ 266 (305)
..++|++|++.+.+.+
T Consensus 32 ~krlEak~~k~~aekk 47 (51)
T PF14981_consen 32 RKRLEAKLKKLEAEKK 47 (51)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568888776665554
No 12
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.04 E-value=1.2e+02 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=20.6
Q ss_pred ccccHHHHHHH------HcCChHHHHHHHHHHHHHHH
Q 021919 229 AAVWSEVSQYI------MRQDWEKASEAKKAVEEKQR 259 (305)
Q Consensus 229 r~rW~~d~~al------~~gd~~~A~~eK~~lEe~QR 259 (305)
++.|.++...| -.++++.|.+.|...|+.+.
T Consensus 29 kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a 65 (155)
T PRK06569 29 KFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNK 65 (155)
T ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555554444 45889999999988666543
No 13
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=21.33 E-value=1.2e+02 Score=25.23 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=22.6
Q ss_pred cccccHHHHHHHHc------CChHHHHHHHHHHHHHHHH
Q 021919 228 SAAVWSEVSQYIMR------QDWEKASEAKKAVEEKQRK 260 (305)
Q Consensus 228 Sr~rW~~d~~al~~------gd~~~A~~eK~~lEe~QR~ 260 (305)
.++.|+|+...|++ ++++.|.+.|...++.+..
T Consensus 26 ~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e 64 (164)
T PRK14471 26 AKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQAD 64 (164)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777766654 6778888887777765443
No 14
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.47 E-value=1.4e+02 Score=24.40 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=22.6
Q ss_pred ccccHHHHHHHH------cCChHHHHHHHHHHHHHHHHH
Q 021919 229 AAVWSEVSQYIM------RQDWEKASEAKKAVEEKQRKL 261 (305)
Q Consensus 229 r~rW~~d~~al~------~gd~~~A~~eK~~lEe~QR~~ 261 (305)
+++|+|+...|+ .++++.|.+.+.++++.+.+-
T Consensus 26 kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~ 64 (141)
T PRK08476 26 SWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEI 64 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777666554 477888888888877765443
Done!