Query 021919
Match_columns 305
No_of_seqs 147 out of 1060
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 4.4E-81 1.5E-85 602.4 25.8 265 11-282 82-371 (438)
2 3twe_A Alpha4H; unknown functi 72.5 6.5 0.00022 21.4 3.7 21 247-267 3-23 (27)
3 4g3b_A Alpha4F3D; alpha helix, 70.5 7.1 0.00024 21.1 3.6 21 247-267 3-23 (26)
4 2c5i_P Vacuolar protein sortin 53.6 3.4 0.00011 23.6 0.4 10 55-64 1-10 (29)
5 2w6b_A RHO guanine nucleotide 48.3 18 0.00062 23.9 3.3 21 246-266 25-45 (56)
6 3syn_E ATP-binding protein YLX 37.2 18 0.00062 19.0 1.6 19 241-259 3-21 (23)
7 2lnz_A Ubiquitin-like protein 33.8 16 0.00055 24.7 1.3 36 224-260 23-59 (64)
8 2q2f_A Selenoprotein S; anti-p 31.0 31 0.0011 25.0 2.5 23 244-266 59-81 (89)
9 3l4f_A RHO guanine nucleotide 24.8 90 0.0031 21.1 3.8 21 246-266 22-42 (61)
10 2bzv_A Fiber protein 2; recept 22.5 21 0.00071 29.7 0.3 13 49-61 165-177 (181)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=4.4e-81 Score=602.44 Aligned_cols=265 Identities=29% Similarity=0.478 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhhhccCCC--------ccccCCCCCCCCCeEEeec--------CcEEEEeeecccCCceeEEEEEeCCC
Q 021919 11 PLERFTAVVAWSISMNRPP--------VFGSAPYNPVLGETHHVSR--------GNLNILLEQVSHHPPVTALHATDEKE 74 (305)
Q Consensus 11 p~eRm~~V~~f~iS~~~~~--------~~~~KPfNPiLGETf~~~~--------~~~~~iaEQVSHHPPisA~~~~~~~~ 74 (305)
|++||++|++|+||+++.. ...+|||||||||||++.. +.++|||||||||||||||||++++.
T Consensus 82 p~eRm~~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~ 161 (438)
T 1zhx_A 82 ELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKN 161 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCC
Confidence 9999999999999997531 2238999999999998762 34899999999999999999999999
Q ss_pred CEEEEEEEeeccEEEee-EEEEEEcceEEEEEcCCceeEEecCCceEEE--EeecceEEeeeeEEEEeCCCCceEEEEEe
Q 021919 75 NIEIIWCQHPAPKFYGA-SVEAEVHGRRQLKLLNHNETYEMNSPKLCIR--FLPVPGADWVGNVKIKCYETGLEAELFYK 151 (305)
Q Consensus 75 g~~~~g~~~~~~kF~G~-sv~~~~~G~~~i~f~~~~e~y~~~~P~~~v~--i~G~~~~e~~G~~~i~~~~tg~~a~i~F~ 151 (305)
||+++|++.++++|+|+ ||++.+.|.++|+|. ||+|+|++|+++++ |+|++|+|++|+|+|+| +||++|+|+|+
T Consensus 162 g~~~~g~~~~kskF~G~~Sv~v~~~G~~~l~l~--~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~-~tg~~~~l~F~ 238 (438)
T 1zhx_A 162 KVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIK--DESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFS 238 (438)
T ss_dssp TEEEEEEEEEEEEECTTCCEEEEEECCEEEEET--TEEEEEECCCEEEECTTTTCCEEEECSEEEEEE-TTSCEEEEEEE
T ss_pred CEEEEEEeeeEEEEcCceEEEEEcceEEEEEEC--CcEEEEecCcEEEEEEEecceeEecCCeEEEEc-CCCCEEEEEEc
Confidence 99999999999999999 999999999999997 89999999999999 89999999999999999 79999999999
Q ss_pred eCCcccccCcceEEEEEEEeCC-----CCeeEEEEEEEecceEEEEEcCCCc-eEEEEecccccCCCCCccccCCCCCCC
Q 021919 152 ANPFIALRRNHRAVKGKIYNSS-----SSKILYEIDGHWDRTVSLKDVNNGK-STIIYNAKEVLTGLKAPIVKDLEEMWP 225 (305)
Q Consensus 152 ~~~~~~~~~~~~~v~G~I~~~~-----~~~~~~~i~G~W~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (305)
++||| +|+.|.|+|+|++.+ +++++++|+|+|++.+++.+..+++ ..++|++.+.+. .+..+.|+++|+|
T Consensus 239 ~kg~f--~g~~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~~~~~~~~~~~~~~~--~~~~v~p~e~q~p 314 (438)
T 1zhx_A 239 GRGYF--SGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPA--EHLNVKPLEEQHP 314 (438)
T ss_dssp CSSSS--CSSSSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCGGGCEEEEETTTSCC--CCCBCCCGGGCCT
T ss_pred CCCCc--CCCccEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCCCccceEEeccCCCCC--ccccCCChhhCCC
Confidence 99995 588899999999842 5678999999999999999887665 578999988532 3345678889999
Q ss_pred CCcccccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeeEEecC
Q 021919 226 SESAAVWSEVSQYIMRQDWEKASEAKKAVEEKQRKLLRERESAGETWVPKHFTVTCN 282 (305)
Q Consensus 226 tdSr~rW~~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~r~~~~~~w~P~~F~~~~~ 282 (305)
+|||++|++|++||++||++.|+++|.+|||+||++||+|+++|++|+||||+++.+
T Consensus 315 tdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 315 LESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp TBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred cccchhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccceEEECCc
Confidence 999999999999999999999999999999999999999999999999999999976
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=72.55 E-value=6.5 Score=21.44 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021919 247 ASEAKKAVEEKQRKLLRERES 267 (305)
Q Consensus 247 A~~eK~~lEe~QR~~rk~r~~ 267 (305)
|.+.-..||+.|...||.|++
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677899999999998874
No 3
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=70.54 E-value=7.1 Score=21.11 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021919 247 ASEAKKAVEEKQRKLLRERES 267 (305)
Q Consensus 247 A~~eK~~lEe~QR~~rk~r~~ 267 (305)
|.+.-..||+.|...||.|++
T Consensus 3 ade~ykeled~qerlrk~rkk 23 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXRKK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 445566799999988888874
No 4
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=53.63 E-value=3.4 Score=23.58 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=2.6
Q ss_pred eeecccCCce
Q 021919 55 LEQVSHHPPV 64 (305)
Q Consensus 55 aEQVSHHPPi 64 (305)
|||+||--|+
T Consensus 1 aeqItHKK~l 10 (29)
T 2c5i_P 1 AEQISHKKSL 10 (29)
T ss_dssp ------CCCC
T ss_pred CccccccCCc
Confidence 6888887665
No 5
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=48.33 E-value=18 Score=23.89 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021919 246 KASEAKKAVEEKQRKLLRERE 266 (305)
Q Consensus 246 ~A~~eK~~lEe~QR~~rk~r~ 266 (305)
+-.+.|.-||+.||+++++.+
T Consensus 25 e~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 25 DNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999887654
No 6
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=37.16 E-value=18 Score=18.95 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=14.7
Q ss_pred cCChHHHHHHHHHHHHHHH
Q 021919 241 RQDWEKASEAKKAVEEKQR 259 (305)
Q Consensus 241 ~gd~~~A~~eK~~lEe~QR 259 (305)
.+.+|+|.....++|.+.|
T Consensus 3 mnrydqaatlrakmekrer 21 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRER 21 (26)
T ss_pred cchHHHHHHHHHHHHHHhh
Confidence 4568888888888887665
No 7
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=33.78 E-value=16 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=27.0
Q ss_pred CCCCcccccHHHHHHHHcCChHHHHHHH-HHHHHHHHH
Q 021919 224 WPSESAAVWSEVSQYIMRQDWEKASEAK-KAVEEKQRK 260 (305)
Q Consensus 224 ~ptdSr~rW~~d~~al~~gd~~~A~~eK-~~lEe~QR~ 260 (305)
+|++-..=|. +++++.+..+..+...+ ..|+..||-
T Consensus 23 ~p~~l~VPWd-~Ie~lL~n~l~n~~~A~~~~LqRLQKG 59 (64)
T 2lnz_A 23 PPQELTVPWD-DIEALLKNNFENDQAAVRQVMERLQKG 59 (64)
T ss_dssp --CCCCCCHH-HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCccccCCHH-HHHHHHHHHhcChHHHHHHHHHHHHhh
Confidence 7788888895 78888888887777777 888888873
No 8
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=30.98 E-value=31 Score=24.95 Aligned_cols=23 Identities=22% Similarity=0.048 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 021919 244 WEKASEAKKAVEEKQRKLLRERE 266 (305)
Q Consensus 244 ~~~A~~eK~~lEe~QR~~rk~r~ 266 (305)
--.|+.+|.+.+++|.++.|.++
T Consensus 59 eldAqAe~~keKQkqlEEeKR~q 81 (89)
T 2q2f_A 59 ELNAQVEKHKEKLKQLEEEKRRQ 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888887776665
No 9
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=24.76 E-value=90 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021919 246 KASEAKKAVEEKQRKLLRERE 266 (305)
Q Consensus 246 ~A~~eK~~lEe~QR~~rk~r~ 266 (305)
.....|.-+|+.||+++++++
T Consensus 22 e~k~~k~~le~eqraRk~LE~ 42 (61)
T 3l4f_A 22 DNKKMKKSLEEEQRARKDLEK 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999888765
No 10
>2bzv_A Fiber protein 2; receptor, viral protein; 1.15A {Human adenovirus type 41} PDB: 2bzu_A
Probab=22.49 E-value=21 Score=29.67 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=7.1
Q ss_pred CcEEEEeeecccC
Q 021919 49 GNLNILLEQVSHH 61 (305)
Q Consensus 49 ~~~~~iaEQVSHH 61 (305)
..+.||+||=|||
T Consensus 165 ~tFSYI~e~~~~~ 177 (181)
T 2bzv_A 165 AVFCYITEQGSHH 177 (181)
T ss_dssp EEEEEEBCC----
T ss_pred eEEEEEccccccc
Confidence 3467999999988
Done!