BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021921
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 122/286 (42%), Gaps = 24/286 (8%)
Query: 30 IDIDDETTLHFWGPKLEDDHKTLKKPSLVLIHGFGPEAI-W-QWRKQVQFFAPHFNVYVP 87
+D+D LH+ + +D ++VL+HG GP A W + + + A HF+V
Sbjct: 38 VDVDGPLKLHYHEAGVGNDQ------TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAV 91
Query: 88 DLIFFGHSTTRSIQ-RTELFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERV 146
D +GHS R+ + + A +L L +++G+ R +VG S GG A A +P R
Sbjct: 92 DQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARA 151
Query: 147 EKVVIASSG---VNMKRGDNEALVKRANLERIDHLMLPESASQLRTLTGLAVSKNLDIVP 203
++V+ G +N+ D VKR L + + P + L + KNL I P
Sbjct: 152 GRLVLMGPGGLSINLFAPDPTEGVKR--LSKFS--VAPTRENLEAFLRVMVYDKNL-ITP 206
Query: 204 DFFFNDFVHNLYSEN----RQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPL 259
+ F E+ R + L Q VL++WG +D++ PL
Sbjct: 207 ELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPL 266
Query: 260 KMA-TELKELLGKKARLEIIENTSHVPQIENPGLFNSIVKNFLRGS 304
A LK + +A+L + H Q+E FN + FL G
Sbjct: 267 DGALVALKTI--PRAQLHVFGQCGHWVQVEKFDEFNKLTIEFLGGG 310
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 24/286 (8%)
Query: 30 IDIDDETTLHFWGPKLEDDHKTLKKPSLVLIHGFGPEAI-W-QWRKQVQFFAPHFNVYVP 87
+D+D LH+ + +D ++VL+HG GP A W + + + A HF+V
Sbjct: 18 VDVDGPLKLHYHEAGVGNDQ------TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAV 71
Query: 88 DLIFFGHSTTRSIQ-RTELFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERV 146
D +GHS R+ + + A +L L +++G+ R +VG + GG A A +P R
Sbjct: 72 DQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARA 131
Query: 147 EKVVIASSG---VNMKRGDNEALVKRANLERIDHLMLPESASQLRTLTGLAVSKNLDIVP 203
++V+ G +N+ D VKR L + + P + L + KNL I P
Sbjct: 132 GRLVLMGPGGLSINLFAPDPTEGVKR--LSKFS--VAPTRENLEAFLRVMVYDKNL-ITP 186
Query: 204 DFFFNDFVHNLYSEN----RQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPL 259
+ F E+ R + L Q VL++WG +D++ PL
Sbjct: 187 ELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPL 246
Query: 260 KMA-TELKELLGKKARLEIIENTSHVPQIENPGLFNSIVKNFLRGS 304
A LK + +A+L + H Q+E FN + FL G
Sbjct: 247 DGALVALKTI--PRAQLHVFGQCGHWVQVEKFDEFNKLTIEFLGGG 290
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 42/277 (15%)
Query: 45 LEDDHKTLKKPSLVLIHGFGP--EAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQR 102
L + H + ++LIHG GP A WR + + + V PD++ FG + R
Sbjct: 16 LTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFT-----DR 70
Query: 103 TELFQAAS------LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI----- 151
E + + + +++ + +E+ +VG S+GG +A A + ERV+++V+
Sbjct: 71 PENYNYSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVG 130
Query: 152 ----ASSGVNMKRGDNEALVKRANLERI---DHLMLPESASQLRTLTGLAVSKNLDIVPD 204
+ G+N G ++ NL I D ++ + ++LR I P
Sbjct: 131 TRFDVTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLR--------YEASIQPG 182
Query: 205 FFFNDFVHNLYSENRQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATE 264
F + +++ E RQ + L + LI+ G +DQ+ PL +
Sbjct: 183 --FQESFSSMFPEPRQRWIDALASSDE------DIKTLPNETLIIHGREDQVVPLSSSLR 234
Query: 265 LKELLGKKARLEIIENTSHVPQIENPGLFNSIVKNFL 301
L EL+ +A+L + H QIE FN +V F
Sbjct: 235 LGELI-DRAQLHVFGRCGHWTQIEQTDRFNRLVVEFF 270
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 117/277 (42%), Gaps = 42/277 (15%)
Query: 45 LEDDHKTLKKPSLVLIHGFGP--EAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQR 102
L + H + ++LIHG GP A WR + + + V PD++ FG + R
Sbjct: 16 LTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFT-----DR 70
Query: 103 TELFQAAS------LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI----- 151
E + + + +++ + +E+ +VG ++GG +A A + ERV+++V+
Sbjct: 71 PENYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAG 130
Query: 152 ----ASSGVNMKRGDNEALVKRANLERI---DHLMLPESASQLRTLTGLAVSKNLDIVPD 204
+ G+N G ++ NL I D ++ + ++LR I P
Sbjct: 131 TRFDVTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLR--------YEASIQPG 182
Query: 205 FFFNDFVHNLYSENRQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATE 264
F + +++ E RQ + L + LI+ G +DQ+ PL +
Sbjct: 183 --FQESFSSMFPEPRQRWIDALASSDE------DIKTLPNETLIIHGREDQVVPLSSSLR 234
Query: 265 LKELLGKKARLEIIENTSHVPQIENPGLFNSIVKNFL 301
L EL+ +A+L + H QIE FN +V F
Sbjct: 235 LGELI-DRAQLHVFGRCGHWTQIEQTDRFNRLVVEFF 270
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 100/250 (40%), Gaps = 22/250 (8%)
Query: 53 KKPSLVLIHGFGP--EAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF---- 106
+ P++VL+HG GP A WR + A +F V PDLI FG S +
Sbjct: 28 QSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVG 87
Query: 107 -QAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKV-VIASSGVNMKRGDNE 164
+ + L+ G+E+ +VG S GG V + PER +KV ++ S G M
Sbjct: 88 MRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMN----- 142
Query: 165 ALVKRANLERIDHLMLPESASQLRTLTGLAV--SKNLDIVPDFFFNDFVHNLYSENRQXX 222
+ L R+ + R L V +N + + + F E R+
Sbjct: 143 --ARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQ 200
Query: 223 XXXXXXXXXXXXXXV----TLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEII 278
V TL L DVL+ G QD+I PL + L + L K A L ++
Sbjct: 201 EVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDTSLYLTKHL-KHAELVVL 259
Query: 279 ENTSHVPQIE 288
+ H Q+E
Sbjct: 260 DRCGHWAQLE 269
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTT---RSIQRTELFQAA-S 110
P+L+L+HG+ P W+W K + A H++V VPDL FG S + + L +AA
Sbjct: 30 PTLLLLHGW-PGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADD 88
Query: 111 LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
LL+ +G+E+ VVG + V + R + +RV K I
Sbjct: 89 QAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAI 129
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 23/259 (8%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAP----HFNVYVPDLIFFGHSTT--RSIQRTELFQAA 109
++VL+HG GP A W + P + V + D +G S + S R++L A
Sbjct: 38 TVVLLHGSGPGAT-GWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDL-NAR 95
Query: 110 SLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGDNEAL--- 166
L +++++ + + ++G S GG + WPERV K+V+ G +L
Sbjct: 96 ILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTG-----GMSLFTP 150
Query: 167 VKRANLERIDHLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDFVHNLYSENRQXXXXXX 226
+ ++R++ L + L+ + + V D+ D F ++N+ S
Sbjct: 151 MPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT-DALFEARLNNMLSRRDHLENFVK 209
Query: 227 XXXXXXXX---XXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLG-KKARLEIIENTS 282
L+ ++ LIVWG D+ P M L+ L G + L I +
Sbjct: 210 SLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVP--MDAGLRLLSGIAGSELHIFRDCG 267
Query: 283 HVPQIENPGLFNSIVKNFL 301
H Q E+ FN +V NFL
Sbjct: 268 HWAQWEHADAFNQLVLNFL 286
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFA-PHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGK 113
P++ L HGF PE+ + WR Q+ A + V D+ +G S+ + E + L K
Sbjct: 259 PAVCLCHGF-PESWYSWRYQIPALAQAGYRVLAMDMKGYGESS--APPEIEEYCMEVLCK 315
Query: 114 ----LLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
L+K+G+ + +G +GG + ++MA +PERV V
Sbjct: 316 EMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVA 356
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFA-PHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGK 113
P+L L HGF PE+ + WR Q+ A F V D+ +G S+ S E + L K
Sbjct: 257 PALCLCHGF-PESWFSWRYQIPALAQAGFRVLAIDMKGYGDSS--SPPEIEEYAMELLCK 313
Query: 114 ----LLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
L+K+G+ + +G + G + ++MA +PERV V
Sbjct: 314 EMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVA 354
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFA-PHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGK 113
P++ L HGF PE+ + WR Q+ A + V D+ +G S+ E + L K
Sbjct: 55 PAVCLCHGF-PESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP--EIEEYCMEVLCK 111
Query: 114 ----LLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
L+K+G+ + +G +GG + ++MA +PERV V
Sbjct: 112 EMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVA 152
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFA-PHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGK 113
P++ L HGF PE+ + WR Q+ A + V D+ +G S+ E + L K
Sbjct: 40 PAVCLCHGF-PESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP--EIEEYCMEVLCK 96
Query: 114 ----LLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
L+K+G+ + +G +GG + ++MA +PERV V
Sbjct: 97 EMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVA 137
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 242 LEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQIENPGLFNSIVKNFL 301
+ Q L+VWG +D + P+ ++ E ++ +RLEI+E + H IE P F I +FL
Sbjct: 146 IRQKTLLVWGSKDHVVPIALSKEYASII-SGSRLEIVEGSGHPVYIEKPEEFVRITVDFL 204
Query: 302 R 302
R
Sbjct: 205 R 205
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 54 KPSLVLIHGFGPEAIWQWRKQ---VQFFAPHFNVYVPDLIFFGHSTTR---SIQRTELFQ 107
+ S+ L HG+ + W K + +NVY PD FG S + I R +L
Sbjct: 27 RRSIALFHGYSFTSX-DWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKH 85
Query: 108 AAS-LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV-IASSGVNMKRGDNEA 165
AA + L+ GV R + G S GG +P+ V+ ++ +A + V +GD +
Sbjct: 86 AAEFIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGIIAVAPAWVESLKGDXKK 145
Query: 166 LVKRANL 172
+ ++ L
Sbjct: 146 IRQKTLL 152
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 57 LVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHST-----TRSIQRTELFQAASL 111
L+L+HG+ P+ W K A +F V DL +G S+ I ++ A
Sbjct: 28 LLLLHGY-PQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQ 86
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
+++ K+G E+F VVG G VA+ +A P RV+K+ +
Sbjct: 87 VEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLAL 126
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 45 LEDDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFA-PHFNVYVPDLIFFGHSTTRSIQRT 103
+ D + P +VL+HGF PE+ + WR Q+ A + V D +G S+ +Q+
Sbjct: 24 VADSPPDQQGPLVVLLHGF-PESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKA 82
Query: 104 ELFQ--AASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
+ + +L+ G E+ VVG +G VA+ A + P+R VV
Sbjct: 83 YRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 45 LEDDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFA-PHFNVYVPDLIFFGHSTTRSIQRT 103
+ D + P +VL+HGF PE+ + WR Q+ A + V D +G S+ +Q+
Sbjct: 18 VADSPPDQQGPLVVLLHGF-PESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKA 76
Query: 104 ELFQ--AASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
+ + +L+ G E+ VVG +G VA+ A + P+R VV
Sbjct: 77 YRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 125
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQRTELFQ----AA 109
P+++ IHGF PE + WR Q+ + A + PDL +G +T + F
Sbjct: 32 PTILFIHGF-PELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVG 90
Query: 110 SLGKLLEKIGV--ERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
+ LLE I E+ VV +G +A+H+ P++V+ +V
Sbjct: 91 DVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALV 133
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQRTELFQ----AA 109
P+++ IHGF PE + WR Q+ + A + PDL +G +T + F
Sbjct: 32 PTILFIHGF-PELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVG 90
Query: 110 SLGKLLEKIGV--ERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
+ LLE I E+ VV +G +A+H+ P++V+ +V
Sbjct: 91 DVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALV 133
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 34 DETTLHFWGPKLEDDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFG 93
D TLH +L K P L+L+HG+ P+ W + A ++V + DL +G
Sbjct: 12 DYLTLHTSAARLRVAVKG-SGPPLLLLHGY-PQTHLAWHRIAPRLAEDYSVVLADLRGYG 69
Query: 94 HSTTRSIQRTELFQAASLGKLLE---KIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV 150
S + + +AA LE ++G ERF+V+G G V Y +A P+ V V
Sbjct: 70 ESRALDEEGADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFV 129
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 57 LVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLLE 116
LVL+HG+G A WR + + HF +++ DL FG R+ F A SL + E
Sbjct: 16 LVLLHGWGLNAE-VWRCIDEELSSHFTLHLVDLPGFG--------RSRGFGALSLADMAE 66
Query: 117 KI---GVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
+ ++ +G + GG VA +A PERV+ +V +S
Sbjct: 67 AVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVAS 107
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 57 LVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLLE 116
LVL+HG+G A WR + + HF +++ DL FG R+ F A SL E
Sbjct: 16 LVLLHGWGLNAE-VWRCIDEELSSHFTLHLVDLPGFG--------RSRGFGALSLADXAE 66
Query: 117 KI---GVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
+ ++ +G S GG VA +A PERV +V +S
Sbjct: 67 AVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 107
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 71 WRKQVQFFA-PHFNVYVPDLIFFGHSTTRSIQRTELFQ-AASLGKLLEKIGVERFSVVGT 128
W + + A + V D + F S+ + + Q AA+ LLE++GV R SV+G
Sbjct: 62 WERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHALLERLGVARASVIGH 121
Query: 129 SYGGFVAYHMARMWPERVEKVVI 151
S GG +A A ++P +VE++V+
Sbjct: 122 SXGGXLATRYALLYPRQVERLVL 144
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTT-----RSIQRTELFQAA 109
P+L+L+HGF P+ + W + A + V DL +G S+ + A+
Sbjct: 26 PALLLLHGF-PQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMAS 84
Query: 110 SLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
+L+ +G ERF +VG + GG + MA P+ V + +
Sbjct: 85 DQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAV 126
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTT-----RSIQRTELFQAA 109
P+L+L+HGF P+ + W + A + V DL +G S+ + A+
Sbjct: 26 PALLLLHGF-PQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMAS 84
Query: 110 SLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
+L+ +G ERF +VG GG + MA P+ V + +
Sbjct: 85 DQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAV 126
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 34 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 92
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 93 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 128
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 31 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 89
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 90 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 125
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + AP PDLI G S + L +
Sbjct: 31 PVLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFI 89
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
E +G+E +V +G + +H A+ PERV+ +
Sbjct: 90 EALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 125
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 95/263 (36%), Gaps = 27/263 (10%)
Query: 47 DDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRT-EL 105
D + P +VL + G + + W QV + HF V D GHS T E
Sbjct: 19 DGERHGNAPWIVLSNSLGTD-LSXWAPQVAALSKHFRVLRYDTRGHGHSEAPKGPYTIEQ 77
Query: 106 FQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGDNEA 165
LG L + + + R + G S GG +A +R+E+V + ++ + G E
Sbjct: 78 LTGDVLG-LXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAARI--GSPEV 134
Query: 166 LVKRANLERIDHLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDFVHN---LYSENRQXX 222
V RA R + A R T + +V + FVH Y+ N +
Sbjct: 135 WVPRAVKARTEGXHALADAVLPRWFTADYXERE-PVVLAXIRDVFVHTDKEGYASNCE-- 191
Query: 223 XXXXXXXXXXXXXXVTLSP----LEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEII 278
L P ++ L++ G D EL + + +E+
Sbjct: 192 ----------AIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQAIAGARYVEL- 240
Query: 279 ENTSHVPQIENPGLFNSIVKNFL 301
+ SH+ IE F V +FL
Sbjct: 241 -DASHISNIERADAFTKTVVDFL 262
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 11/207 (5%)
Query: 101 QRTELFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKR 160
++ L A ++ L++ + ++R +VG S GG A + A +P+R+ K+++ G
Sbjct: 84 EQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPG----- 138
Query: 161 GDNEALVKRANLERID---HLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDF--VHNLY 215
G ++ +E I L S L+ + + + I + + +
Sbjct: 139 GLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQP 198
Query: 216 SENRQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARL 275
+ L ++ I WG D+ PL +L + ARL
Sbjct: 199 EHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARL 257
Query: 276 EIIENTSHVPQIENPGLFNSIVKNFLR 302
+ H Q E+ FN +V +FLR
Sbjct: 258 HVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 11/207 (5%)
Query: 101 QRTELFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKR 160
++ L A ++ L++ + ++R +VG + GG A + A +P+R+ K+++ G
Sbjct: 81 EQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPG----- 135
Query: 161 GDNEALVKRANLERID---HLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDF--VHNLY 215
G ++ +E I L S L+ + + + I + + +
Sbjct: 136 GLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQP 195
Query: 216 SENRQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARL 275
+ L ++ I WG D+ PL +L + ARL
Sbjct: 196 EHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARL 254
Query: 276 EIIENTSHVPQIENPGLFNSIVKNFLR 302
+ H Q E+ FN +V +FLR
Sbjct: 255 HVFSKCGHWAQWEHADEFNRLVIDFLR 281
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 11/207 (5%)
Query: 101 QRTELFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKR 160
++ L A ++ L++ + ++R +VG + GG A + A +P+R+ K+++ G
Sbjct: 84 EQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPG----- 138
Query: 161 GDNEALVKRANLERID---HLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDF--VHNLY 215
G ++ +E I L S L+ + + + I + + +
Sbjct: 139 GLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQP 198
Query: 216 SENRQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARL 275
+ L ++ I WG D+ PL +L + ARL
Sbjct: 199 EHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARL 257
Query: 276 EIIENTSHVPQIENPGLFNSIVKNFLR 302
+ H Q E+ FN +V +FLR
Sbjct: 258 HVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKL 114
P ++ +HG P + WR + +P + PDLI FG S I L
Sbjct: 30 PVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAF 88
Query: 115 LEKIGVERFSVVGTSYGGFVAYHMARMWPERV 146
+E+ GV +V +G +A+H+A P+ V
Sbjct: 89 IEQRGVTSAYLVAQDWGTALAFHLAARRPDFV 120
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKL 114
P ++ +HG P + WR + +P + PDLI FG S I L
Sbjct: 30 PVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAF 88
Query: 115 LEKIGVERFSVVGTSYGGFVAYHMARMWPERV 146
+E+ GV +V +G +A+H+A P+ V
Sbjct: 89 IEQRGVTSAYLVAQDWGTALAFHLAARRPDFV 120
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKL 114
P ++ +HG P + WR + +P + PDLI FG S I L
Sbjct: 30 PVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAF 88
Query: 115 LEKIGVERFSVVGTSYGGFVAYHMARMWPERV 146
+E+ GV +V +G +A+H+A P+ V
Sbjct: 89 IEQRGVTSAYLVAQDWGTALAFHLAARRPDFV 120
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 53 KKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAASLG 112
+KP L L + G + W Q+ HF V D G S+ T +
Sbjct: 26 EKPLLALSNSIG-TTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVL 84
Query: 113 KLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
+LL+ + V R +G S GG V +A P+R+E++V+A++
Sbjct: 85 ELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANT 126
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 11/203 (5%)
Query: 105 LFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGDNE 164
L A ++ L++ + ++R +VG S GG A + A +P+R+ K+++ G G
Sbjct: 88 LVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPG-----GLGP 142
Query: 165 ALVKRANLERID---HLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDF--VHNLYSENR 219
++ +E I L S L+ + + + I + + + +
Sbjct: 143 SMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLK 202
Query: 220 QXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIE 279
L ++ I WG D+ PL +L + ARL +
Sbjct: 203 NFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFS 261
Query: 280 NTSHVPQIENPGLFNSIVKNFLR 302
Q E+ FN +V +FLR
Sbjct: 262 KCGQWAQWEHADEFNRLVIDFLR 284
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 55 PSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQ-AASLGK 113
P +VLI G G + W Q+ + V D G++ + + Q AA L +
Sbjct: 16 PVVVLISGLGGSGSY-WLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQXAAELHQ 74
Query: 114 LLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSG 155
L G+E ++VVG + G V +A +P V V+I+ +G
Sbjct: 75 ALVAAGIEHYAVVGHALGALVGXQLALDYPASV-TVLISVNG 115
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 11/203 (5%)
Query: 105 LFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGDNE 164
L A ++ L++ + ++R +VG + GG A + A +P+R+ K+++ G G
Sbjct: 88 LVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPG-----GLGP 142
Query: 165 ALVKRANLERID---HLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDF--VHNLYSENR 219
++ +E I L S L+ + + + I + + + +
Sbjct: 143 SMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLK 202
Query: 220 QXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIE 279
L ++ I WG D+ PL +L + ARL +
Sbjct: 203 NFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFS 261
Query: 280 NTSHVPQIENPGLFNSIVKNFLR 302
Q E+ FN +V +FLR
Sbjct: 262 KCGQWAQWEHADEFNRLVIDFLR 284
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 17/205 (8%)
Query: 113 KLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMK-----RGDNEALV 167
+ +G+ER+ V+G S+GG + +A P + + I +S +M+ GD A +
Sbjct: 118 AVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQL 177
Query: 168 K---RANLER------IDHLMLPESASQL-RTLTGLAVSKNLDIVPDFFFNDFVHNLYSE 217
RA L+R I H ++A++ R V D + +Y
Sbjct: 178 PAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHT 237
Query: 218 NRQXXXXXXXXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEI 277
L + VL++ G+ D+ P + + R +
Sbjct: 238 MNGPNEFHVVGTLGDWSVIDRLPDVTAPVLVIAGEHDEATPKTWQPFVDHI--PDVRSHV 295
Query: 278 IENTSHVPQIENPGLFNSIVKNFLR 302
TSH +E P F ++V FL
Sbjct: 296 FPGTSHCTHLEKPEEFRAVVAQFLH 320
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 47 DDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSI---QRT 103
+D ++ P+L ++HG + R+ +Q + F V + F + RS+ Q
Sbjct: 18 EDVGPVEGPALFVLHGGPGGNAYVLREGLQDYLEGFRV----VYFDQRGSGRSLELPQDP 73
Query: 104 ELFQAASLGK----LLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVN 157
LF +L + L E +GVERF ++ +G VA + R +P+ E ++ + VN
Sbjct: 74 RLFTVDALVEDTLLLAEALGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVN 130
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/140 (17%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 34 DETTLHFWGPKLEDDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFG 93
++ L WG + + P ++ IHG + + + A + V PDL FG
Sbjct: 14 NQICLCSWG--------SPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDL--FG 63
Query: 94 HSTTRSIQRTELFQA----ASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKV 149
H + ++ + + A + ++++++ + +VG S G +A +A + P++++++
Sbjct: 64 HGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKEL 123
Query: 150 VIASSGVNMKRGDNEALVKR 169
++ + + E+ V +
Sbjct: 124 ILVELPLPAEESKKESAVNQ 143
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 13/251 (5%)
Query: 57 LVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFG-----HSTTRSIQRTELFQAASL 111
+VL HGFG + W + + + V + DL+ G H R + + L
Sbjct: 20 VVLSHGFGTDQ-SAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAY-VDDL 77
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV-IASSGVNMKRGDNEALVKRA 170
+L+ + + R + VG S + + P+ K+V I +S + D +
Sbjct: 78 LAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELE 137
Query: 171 NLERIDHLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDFVHNLYSENRQXXXXXXXXXX 230
++++ M ++ LAV ++ +F L++
Sbjct: 138 EIQQVFDAMGANYSAWATGYAPLAVGADVPAA----VQEFSRTLFNMRPDISLHVCQTVF 193
Query: 231 XXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQIENP 290
V L + ++V +D P +A LK LG + +E ++ H+P + P
Sbjct: 194 KTDLRGV-LGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLPHLSAP 252
Query: 291 GLFNSIVKNFL 301
L +++ L
Sbjct: 253 SLLAQVLRRAL 263
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 13/251 (5%)
Query: 57 LVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFG-----HSTTRSIQRTELFQAASL 111
+VL HGFG + W + + + V + DL+ G H R + + L
Sbjct: 22 VVLSHGFGTDQ-SAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAY-VDDL 79
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV-IASSGVNMKRGDNEALVKRA 170
+L+ + + R + VG S + + P+ K+V I +S + D +
Sbjct: 80 LAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELE 139
Query: 171 NLERIDHLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDFVHNLYSENRQXXXXXXXXXX 230
++++ M ++ LAV ++ +F L++ R
Sbjct: 140 EIQQVFDAMGANYSAWATGYAPLAVGADVPAA----VQEFSRTLFNM-RPDISLHVCQTV 194
Query: 231 XXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQIENP 290
L + ++V +D P +A LK LG + +E ++ H+P + P
Sbjct: 195 FKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLPHLSAP 254
Query: 291 GLFNSIVKNFL 301
L +++ L
Sbjct: 255 SLLAQVLRRAL 265
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 53 KKPSLVLIHGFGPEA--IWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAAS 110
K ++LIHG G A WR + A H+ V D++ FG + I+ T+ +
Sbjct: 35 KGQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRH 94
Query: 111 LGKLLEKIGVE-RFSVVGTSYGGFVAYHMARMWPERVEKVVIASSG 155
L ++ + + + S+VG S GG ++ + E V +V+ S
Sbjct: 95 LHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSA 140
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 29 TIDIDDETTLHFWGPKLEDDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAP-HFNVYVP 87
++ +DD TL+F E KP +V++HG GP K +F P + + +
Sbjct: 15 SLKVDDRHTLYF-----EQCGNPHGKP-VVMLHG-GPGGGCN-DKMRRFHDPAKYRIVLF 66
Query: 88 DLIFFGHSTTRS--IQRTELFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPER 145
D G ST + + T A + +L +GV+R+ V G S+G +A A+ P++
Sbjct: 67 DQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQ 126
Query: 146 VEKVVI 151
V ++V+
Sbjct: 127 VTELVL 132
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 57 LVLIHGFGPEAIWQWRKQVQFF-APHFNVYVPDLIFFGHSTTRSIQRTELFQAASLGKLL 115
++ +HG P + + WR + + A + PDLI G S I+ A +
Sbjct: 32 VLFLHG-NPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQDHVAYXDGFI 90
Query: 116 EKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
+ +G++ +V +G + AR+ P+RV V +
Sbjct: 91 DALGLDDXVLVIHDWGSVIGXRHARLNPDRVAAVAFXEA 129
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 55 PSLVLIHGFGPEAIWQ---WRKQVQFFAPHFNVYVPDLIFFGH-STTRSIQRTELFQAAS 110
P LVL+HG A++ W + ++ + Y D+I + S ++ T A
Sbjct: 68 PPLVLLHG----ALFSSTXWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANW 123
Query: 111 LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIAS 153
L + + +G+E+ +G S GG + PERV+ I S
Sbjct: 124 LLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILS 166
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 101 QRTELFQAASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSG 155
++ L A ++ L++ + ++R +VG + GG A + A +P+R+ K+++ G
Sbjct: 84 EQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPG 138
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 239 LSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQIENPGLFNSIVK 298
L ++ I WG D+ PL +L + ARL + Q E+ FN +V
Sbjct: 222 LGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGAWAQWEHADEFNRLVI 280
Query: 299 NFLR 302
+FLR
Sbjct: 281 DFLR 284
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 50 KTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAA 109
K + P ++L+HGFG + ++W + + A F V PDL G S + A
Sbjct: 26 KGGQGPLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAV 84
Query: 110 SLGKLLEKIGVER-FSVVGTSYGGFVAYHM 138
L KL + +R F +V G + Y M
Sbjct: 85 YLHKLARQFSPDRPFDLVAHDIGIWNTYPM 114
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 50 KTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAA 109
K + P ++L+HGFG + ++W + + A F V PDL G S + A
Sbjct: 26 KGGQGPLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAV 84
Query: 110 SLGKLLEKIGVER-FSVVGTSYGGFVAYHM 138
L KL + +R F +V G + Y M
Sbjct: 85 YLHKLARQFSPDRPFDLVAHDIGIWNTYPM 114
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 50 KTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAA 109
K + P ++L+HGFG + ++W + + A F V PDL G S + A
Sbjct: 26 KGGQGPLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAV 84
Query: 110 SLGKLLEKIGVER-FSVVGTSYGGFVAYHM 138
L KL + +R F +V G + Y M
Sbjct: 85 YLHKLARQFSPDRPFDLVAHDIGIWNTYPM 114
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 56 SLVLIHGFGPEAIWQ--WRKQVQFF-APHFNVYVPDLIFFGHS--TTRSIQRTELFQAAS 110
+ + +HG E W +RK + F A V PDL FG S T T F S
Sbjct: 48 TFLCLHG---EPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRS 104
Query: 111 LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGV 156
L L+ + +ER ++V +GG + + P+ V+++++ ++ +
Sbjct: 105 LLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTAL 150
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 109 ASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
A + +L E GVE++ V G S+G +A A+ PERV ++V+
Sbjct: 93 ADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVL 135
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 78 FAPHFNVYVPDLIFFGHSTTRSIQRTELFQAA------SLGKLLEKIGVERFSVVGTSYG 131
APH + + DL+ S R + R ++ Q A SL L GVE +VVG S G
Sbjct: 589 LAPHVDWSLTDLL----SGARPLDRVDVVQPALFAVXVSLAALWRSHGVEPAAVVGHSQG 644
Query: 132 GFVAYHMA 139
A H+A
Sbjct: 645 EIAAAHVA 652
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 57 LVLIHGFGPEAIWQW--RKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQR--TELFQAASL 111
+ +HG E W + RK + FA V PD FG S + T F L
Sbjct: 50 FLCLHG---EPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL 106
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
L+E++ + ++V +GGF+ + P R ++++I ++
Sbjct: 107 LALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 57 LVLIHGFGPEAIWQW--RKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQR--TELFQAASL 111
+ +HG E W + RK + FA V PD FG S + T F L
Sbjct: 50 FLCLHG---EPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL 106
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
L+E++ + ++V +GGF+ + P R ++++I ++
Sbjct: 107 LALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 57 LVLIHGFGPEAIWQW--RKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQR--TELFQAASL 111
+ +HG E W + RK + FA V PD FG S + T F L
Sbjct: 50 FLCLHG---EPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL 106
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
L+E++ + ++V +GGF+ + P R ++++I ++
Sbjct: 107 LALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 57 LVLIHGFGPEAIWQW--RKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQRTELFQAAS--L 111
+ +HG E W + RK + FA V PD FG S + F+ L
Sbjct: 50 FLCLHG---EPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL 106
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
L+E++ + ++V +GGF+ + P R ++++I ++
Sbjct: 107 LALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 57 LVLIHGFGPEAIWQW--RKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQR--TELFQAASL 111
+ +HG E W + RK + FA V PD FG S + T F L
Sbjct: 50 FLCLHG---EPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL 106
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
L+E++ + ++V +GGF+ + P R ++++I ++
Sbjct: 107 LALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 57 LVLIHGFGPEAIWQW--RKQVQFFAPH-FNVYVPDLIFFGHSTTRSIQR--TELFQAASL 111
+ +HG E W + RK + FA V PD FG S + T F L
Sbjct: 50 FLCLHG---EPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFL 106
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASS 154
L+E++ + ++V +GGF+ + P R ++++I ++
Sbjct: 107 LALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 120 VERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGD 162
V +VG S GG VA +A ++P+ ++KVV+ + +K GD
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLK-GD 159
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 101/256 (39%), Gaps = 17/256 (6%)
Query: 54 KPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTR----SIQRTELFQAA 109
+ ++VL HGFG + W+ V + V + D + G TT R +
Sbjct: 35 EATIVLGHGFGTDQ-SVWKHLVPHLVDDYRVVLYDNM--GAGTTNPDYFDFDRYSNLEGY 91
Query: 110 S--LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV-IASSGVNMKRGDNEAL 166
S L +LE + +E VG S + + P+ K+V I++S + D +
Sbjct: 92 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGG 151
Query: 167 VKRANLERIDHLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDFVHNLYSENRQXXXXXX 226
++ +L ++ + + LAV ++D + F+ + N+ +
Sbjct: 152 FEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTI 211
Query: 227 XXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQ 286
P I+ +D P+ ++ L LG ++ +E+I + H+PQ
Sbjct: 212 FQSDMRQILPFVTVPCH----ILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQ 267
Query: 287 IENPGLFNSIVKNFLR 302
+ +P +S++ LR
Sbjct: 268 LSSP---DSVIPVILR 280
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 101/256 (39%), Gaps = 17/256 (6%)
Query: 54 KPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTR----SIQRTELFQAA 109
+ ++VL HGFG + W+ V + V + D + G TT R +
Sbjct: 17 EATIVLGHGFGTDQ-SVWKHLVPHLVDDYRVVLYDNM--GAGTTNPDYFDFDRYSNLEGY 73
Query: 110 S--LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV-IASSGVNMKRGDNEAL 166
S L +LE + +E VG S + + P+ K+V I++S + D +
Sbjct: 74 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGG 133
Query: 167 VKRANLERIDHLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDFVHNLYSENRQXXXXXX 226
++ +L ++ + + LAV ++D + F+ + N+ +
Sbjct: 134 FEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTI 193
Query: 227 XXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQ 286
P I+ +D P+ ++ L LG ++ +E+I + H+PQ
Sbjct: 194 FQSDMRQILPFVTVPCH----ILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQ 249
Query: 287 IENPGLFNSIVKNFLR 302
+ +P +S++ LR
Sbjct: 250 LSSP---DSVIPVILR 262
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 53 KKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQR-TELFQAASL 111
P ++ +HG G A V P V DL GHS R + + +L
Sbjct: 80 SAPRVIFLHGGGQNAHTWDTVIVGLGEPALAV---DLPGHGHSAWREDGNYSPQLNSETL 136
Query: 112 GKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVI 151
+L ++ VVG S GG A +A M P+ V ++V+
Sbjct: 137 APVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVL 176
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 47 DDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF 106
D+ + P+++L+ G+ + ++ +Q F V VP+ G S +
Sbjct: 20 DNQRDTDGPAILLLPGWCHDHR-VYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQE 78
Query: 107 QAASLGKLLEKIGVERFSVVGTSYGGFVAYH-MARMWPERVEKVVI 151
Q ++L+++GVE F V S+GG+V + + PER + +I
Sbjct: 79 QVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGII 124
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 101/256 (39%), Gaps = 17/256 (6%)
Query: 54 KPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTR----SIQRTELFQAA 109
+ ++VL HGFG + W+ V + V + D + G TT R +
Sbjct: 19 EATIVLGHGFGTDQ-SVWKHLVPHLVDDYRVVLYDNM--GAGTTNPDYFDFDRYSNLEGY 75
Query: 110 S--LGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVV-IASSGVNMKRGDNEAL 166
S L +LE + +E VG S + + P+ K+V I++S + D +
Sbjct: 76 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGG 135
Query: 167 VKRANLERIDHLMLPESASQLRTLTGLAVSKNLDIVPDFFFNDFVHNLYSENRQXXXXXX 226
++ +L ++ + + LAV ++D + F+ + N+ +
Sbjct: 136 FEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTI 195
Query: 227 XXXXXXXXXXVTLSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQ 286
P I+ +D P+ ++ L LG ++ +E+I + H+PQ
Sbjct: 196 FQSDMRQILPFVTVPCH----ILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQ 251
Query: 287 IENPGLFNSIVKNFLR 302
+ +P +S++ LR
Sbjct: 252 LSSP---DSVIPVILR 264
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 47 DDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF 106
D+ + P+++L+ G+ + ++ +Q F V VP+ G S +
Sbjct: 23 DNQRDTDGPAILLLPGWCHDHR-VYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQE 81
Query: 107 QAASLGKLLEKIGVERFSVVGTSYGGFVAYH-MARMWPERVEKVVI 151
Q ++L+++GVE F V S+GG+V + + PER + +I
Sbjct: 82 QVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGII 127
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 120 VERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGD 162
V +VG + GG VA +A ++P+ ++KVV+ + +K GD
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLK-GD 159
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 120 VERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGD 162
V +VG + GG VA +A ++P+ ++KVV+ + +K GD
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLK-GD 159
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 110/272 (40%), Gaps = 52/272 (19%)
Query: 57 LVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELFQAAS--LGKL 114
LV +HGF ++ + ++ F +++V DL G + S+ T F + L ++
Sbjct: 19 LVFLHGFLSDS-RTYHNHIEKFTDNYHVITIDLPGHGEDQS-SMDETWNFDYITTLLDRI 76
Query: 115 LEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRGDNEALVKRANLER 174
L+K + ++ G S GG VA + A + +++ S+ +K
Sbjct: 77 LDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIK--------------- 121
Query: 175 IDHLMLPESASQL-RTLTGLAVSKNLDIVP-DFFFNDF-------------VHNLYSENR 219
E A+QL R L A +K LDI + F ND+ V + +
Sbjct: 122 -------EEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLELPVEIQHQIRQ 174
Query: 220 QXXXXXXXXXXXXXXXXVT---------LSPLEQDVLIVWGDQDQIFPLKMATELKELLG 270
Q T L ++ LI+ G+ D+ F +++A ++ L+
Sbjct: 175 QRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKF-VQIAKKMANLI- 232
Query: 271 KKARLEIIENTSHVPQIENPGLFNSIVKNFLR 302
++ ++I T H +E+ F++++ FL+
Sbjct: 233 PNSKCKLISATGHTIHVEDSDEFDTMILGFLK 264
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 47 DDHKTLKKPSLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF 106
DD+ T P + + G W + F A + I F + + + E F
Sbjct: 38 DDNGT-GDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRC-----ITFDNRGIGATENAEGF 91
Query: 107 QA----ASLGKLLEKIGVERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNMKRG 161
A L+E + + VVG S G F+A + + PE V V+ ++ + R
Sbjct: 92 TTQTMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRA 150
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF-QAASLGKL 114
+++ +HG + + WR V P +PDLI G S L L
Sbjct: 46 AVIFLHGNATSS-YLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAW 104
Query: 115 LEKIGV-ERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNM 158
E + + ++ VG +G +A+H A +R++ +V S V++
Sbjct: 105 FELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDV 149
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF-QAASLGKL 114
+++ +HG + + WR V P +PDLI G S L L
Sbjct: 45 AVIFLHGNATSS-YLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAW 103
Query: 115 LEKIGV-ERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNM 158
E + + ++ VG +G +A+H A +R++ +V S V++
Sbjct: 104 FELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDV 148
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF-QAASLGKL 114
+++ +HG + + WR V P +PDLI G S L L
Sbjct: 46 AVIFLHGNATSS-YLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAW 104
Query: 115 LEKIGV-ERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNM 158
E + + ++ VG +G +A+H A +R++ +V S V++
Sbjct: 105 FELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDV 149
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 56 SLVLIHGFGPEAIWQWRKQVQFFAPHFNVYVPDLIFFGHSTTRSIQRTELF-QAASLGKL 114
+++ +HG + + WR V P +PDLI G S L L
Sbjct: 45 AVIFLHGNATSS-YLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAW 103
Query: 115 LEKIGV-ERFSVVGTSYGGFVAYHMARMWPERVEKVVIASSGVNM 158
E + + ++ VG +G +A+H A +R++ +V S V++
Sbjct: 104 FELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDV 148
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 239 LSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQIENPGLFNSIVK 298
L ++Q VL++ GD DQI P + + L L L+ + H + + N+ +
Sbjct: 212 LKGIQQPVLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPHGMPTTHADVINADLL 271
Query: 299 NFLR 302
F+R
Sbjct: 272 AFIR 275
>pdb|2VAT|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
Length = 444
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 113 KLLEKIGVERFS-VVGTSYGGFVAYHMARMWPERVEKVV-IASS 154
++L+++GV + + VVG S GG A PE V K+V IA+S
Sbjct: 191 QVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATS 234
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 246 VLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSH 283
L+V GD DQ+ P+ + A L++ E +SH
Sbjct: 215 TLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGSSH 252
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 239 LSPLEQDVLIVWGDQDQIFPLKMATELKELLGKKARLEIIENTSHVPQIENPGLFNSIVK 298
L ++ L+V GD DQ+ P++ + L K + L+I H + N+ +
Sbjct: 209 LKKIDVPTLVVHGDADQVVPIEASGIASAALVKGSTLKIYSGAPHGLTDTHKDQLNADLL 268
Query: 299 NFLRG 303
F++G
Sbjct: 269 AFIKG 273
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 116 EKIGVERFSVVGTSYGGFVAYHMA 139
E IG RF + G SYGG++A +A
Sbjct: 84 EIIGARRFILYGHSYGGYLAQAIA 107
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 116 EKIGVERFSVVGTSYGGFVAYHMA 139
E IG RF + G SYGG++A +A
Sbjct: 84 EIIGARRFILYGHSYGGYLAQAIA 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,285,365
Number of Sequences: 62578
Number of extensions: 317706
Number of successful extensions: 949
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 104
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)