BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021923
(305 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/247 (83%), Positives = 229/247 (92%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
E KK A+++SS+FKA A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+AG
Sbjct: 84 EKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAG 143
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L KD + F KYFNFEILHARWAML ALGAL+PEVLD+ GAFH EPVWWRVGYSKLQGET
Sbjct: 144 LGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGET 203
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 204 LDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTL 263
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKGPVQNL+DH+SDPLHNN
Sbjct: 264 FDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNN 323
Query: 243 LLSMVKS 249
LL+M+++
Sbjct: 324 LLAMLQT 330
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/249 (83%), Positives = 229/249 (91%), Gaps = 1/249 (0%)
Query: 2 LETKK-AALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
LE KK +A+ +SSKFKALA +AR +S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+
Sbjct: 86 LEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDI 145
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGLS+DP+AFQK+FNFEILHARWAML +LGALVPE+LD+ GAFH EP+WWRVGYSKL+G
Sbjct: 146 AGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKG 205
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+TLDYLGIPGLHLAGSQGVIVIAICQA+LMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 206 DTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGG 265
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
LFDPLNLSKD AFEELKVKEIKNGRLAMVAWLGFY QAA TGKGPVQNLLDHI+DP H
Sbjct: 266 VLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFH 325
Query: 241 NNLLSMVKS 249
NN LS++ S
Sbjct: 326 NNFLSLLNS 334
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/246 (83%), Positives = 228/246 (92%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
E KK A+Q SSKFKALA++AR ES WYGEERPRWLGPI Y YP+YL+GELPGDYGFDVAG
Sbjct: 91 ERKKLAVQQSSKFKALAQKARKESFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAG 150
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L++DP+AFQ+YFNFEILHARWAML ALGAL+PEVLD+ GAFH +EPVWWRVGYSKL+G+T
Sbjct: 151 LAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDT 210
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLGIPGLH AG QGV+VIA CQA+LMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 211 LDYLGIPGLHFAGGQGVLVIAFCQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGIL 270
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPLNLSKDPV+FEELKVKEIKNGRLAMVAWLGFYIQAA TGKGPV+NL++HISDPLHNN
Sbjct: 271 FDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNN 330
Query: 243 LLSMVK 248
L S +K
Sbjct: 331 LFSTLK 336
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/247 (81%), Positives = 227/247 (91%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
E KK A+++SS+FK+ A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+AG
Sbjct: 81 EKKKEAVENSSRFKSKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAG 140
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L KD + F KYFNFEILHARWAML ALGAL+PEV D+ G FH EPVWWRVGYSKLQGET
Sbjct: 141 LGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGET 200
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
L+YLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 201 LEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTL 260
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKGPVQNL+DH+SDPLHNN
Sbjct: 261 FDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNN 320
Query: 243 LLSMVKS 249
L++M+++
Sbjct: 321 LIAMLQT 327
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/249 (83%), Positives = 229/249 (91%), Gaps = 1/249 (0%)
Query: 2 LETKK-AALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
LE KK +A+ +SSKFKALA +AR +S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+
Sbjct: 86 LEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDI 145
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGLS+DP+AFQK+FNFEILHARWAML +LGALVPE+LD+ GAFH EP+WWRVGYSKL+G
Sbjct: 146 AGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKG 205
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+TLDYLGIPGLHLAGSQGVIVIAICQA+LMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 206 DTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGG 265
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
LFDPLNLSKD AFEELKVKEIKNGRLAMVAWLGFY QAA TGKGPVQNLL+HI+DP H
Sbjct: 266 VLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADPFH 325
Query: 241 NNLLSMVKS 249
NN LS++ S
Sbjct: 326 NNFLSLLNS 334
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/244 (83%), Positives = 224/244 (91%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
M E K A+++SS FKALA +AR ES WYGE+RPRWLGPI Y+YPSYLTGELPGDYGFD+
Sbjct: 78 MEERKTFAVENSSTFKALAGKARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDI 137
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGL +DP+A QKYFNFEILHARWAML ++GAL+PE+LD++GAFH VEPVWWRVGYSKL+G
Sbjct: 138 AGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKG 197
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+TLDYLGI GLH AGSQGV+VIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 198 DTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 257
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
ALFDPLNLS DP AFEELKVKEIKNGRLAMVAWLGFY+QAA TGKGPVQNL+DHISDP H
Sbjct: 258 ALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFH 317
Query: 241 NNLL 244
NNLL
Sbjct: 318 NNLL 321
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/250 (87%), Positives = 238/250 (95%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
M E KKAA+++SSKFKALA +A+NESLWYGEERPRWLGPIPYDYP+YLTGELPGDYGFD+
Sbjct: 82 MEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDI 141
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGL KDP+AFQKYFNFEILHARWAML ALGAL+PE+LD++GAFH VEPVWWRVGYSKL+G
Sbjct: 142 AGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFHFVEPVWWRVGYSKLKG 201
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+TLDYLGIPG H AGSQGVIVIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 202 DTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 261
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA TGKGPVQNLLDH++DP H
Sbjct: 262 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLADPFH 321
Query: 241 NNLLSMVKSM 250
NNLLS+ K++
Sbjct: 322 NNLLSIFKAL 331
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/248 (84%), Positives = 228/248 (91%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
E+KK A+++SSKF+AL +AR ESLWYGEERPRWLGPIPYDYP+YLTGELPGDYGFDVAG
Sbjct: 82 ESKKVAVKESSKFQALTAKARKESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAG 141
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
LSKD +AFQ+YFNFEILHARWAML ALGAL PEVLD+ GAFH +EPVWWRVGYSKL+G+T
Sbjct: 142 LSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDT 201
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLGIPGLH AGSQGV+VIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct: 202 LDYLGIPGLHFAGSQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPL 261
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPLNLS D VA EELKVKEIKNGRLAMVAWLGFY QAA TGKGPVQNL++HISDP HNN
Sbjct: 262 FDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNN 321
Query: 243 LLSMVKSM 250
LL ++K M
Sbjct: 322 LLCVLKFM 329
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/231 (79%), Positives = 209/231 (90%)
Query: 15 FKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
++ ARQAR S WYG+ERPRWLGP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YF
Sbjct: 88 LRSAARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYF 147
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
NFEILH RWAML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +A
Sbjct: 148 NFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIA 207
Query: 135 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
G QGVIVIAICQALLMVGPE ARYCGIEALEPLG++LPGDINYPGGALFDPL LSKDPVA
Sbjct: 208 GGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVA 267
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
FE+LKVKEIKNGRLAMVAWLGFYIQAA TGKGP+QNL++H+SDPLHNN+LS
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/231 (79%), Positives = 208/231 (90%)
Query: 15 FKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
++ ARQAR S WYG+ERPRWLGP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YF
Sbjct: 88 LRSAARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYF 147
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
NFEILH RWAML ALG +VPE+LD+ H VEPVWW+VGY+KLQG+TLDYLGIPG +A
Sbjct: 148 NFEILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIA 207
Query: 135 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
G QGVIVIAICQALLMVGPE ARYCGIEALEPLG++LPGDINYPGGALFDPL LSKDPVA
Sbjct: 208 GGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVA 267
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
FE+LKVKEIKNGRLAMVAWLGFYIQAA TGKGP+QNL++H+SDPLHNN+LS
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/227 (79%), Positives = 202/227 (88%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+R ARN S WYG +RPRWLGP+PYDYP YLTGE PGDYGFD+AGL +DP+AF YFNFEI
Sbjct: 86 SRGARNNSFWYGGDRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEI 145
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
LH RWAML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+ LDYLGIPG +AG QG
Sbjct: 146 LHCRWAMLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQG 205
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
V+VIAICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG LFDPL LSKDPVAFE+L
Sbjct: 206 VVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDL 265
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KVKEIKNGRLAMVAW GFYIQAA TGKGPVQNL++H+SDPL+NN+LS
Sbjct: 266 KVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 312
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/222 (81%), Positives = 201/222 (90%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
N S WYG +RPRWLGP+PYDYP +LTGE PGDYGFD+AGL +DP+AF YFNFEILH RW
Sbjct: 90 NNSFWYGGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRW 149
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143
AML ALG ++PE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIA
Sbjct: 150 AMLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 209
Query: 144 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
ICQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPL LSKDPVAFE+LKVKEI
Sbjct: 210 ICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEI 269
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KNGRLAMVAWLGFYIQAA TGKGPVQNL++H+SDPLHNN+LS
Sbjct: 270 KNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILS 311
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/219 (81%), Positives = 197/219 (89%)
Query: 27 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
W+GE RPRWLGPIPYDYP +L GE PGDYGFD+AGL +DP+AF YFNFEILH RWAML
Sbjct: 97 FWFGEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAML 156
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
ALG ++PE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGI GL +AG QGVIVIAICQ
Sbjct: 157 AALGVVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQ 216
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
ALLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPL LSKDPV FEELKVKEIKNG
Sbjct: 217 ALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNG 276
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
RLAMVAWLGFY+QAA TGKGPVQNL++H+SDPLHNN+LS
Sbjct: 277 RLAMVAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNNILS 315
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/247 (70%), Positives = 203/247 (82%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
M ETK AA S A +AR+ S+W+G++RP+WLGPIPYDYP +L G PGDYGFD+
Sbjct: 72 MQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDI 131
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGL KDP F K+FNFEILHARWAML ALG ++PEVL+ + E VWWRVGY+KL+G
Sbjct: 132 AGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEG 191
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+TLDYLGIPGLH+ G+QG+IVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 192 DTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 251
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
LFDPL LSKDP FEELKVKEIKNGRLAMVAWLGFY+QA T KGP++NLLDH+ DPLH
Sbjct: 252 VLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLH 311
Query: 241 NNLLSMV 247
NN ++ +
Sbjct: 312 NNAVTSI 318
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 171/245 (69%), Positives = 204/245 (83%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
ML+TKKAA + + + + R+ES+WY E RP+WLGPIPYDYP +L GE PGDYGFD+
Sbjct: 99 MLKTKKAAQEAAGEAREAQSNVRDESMWYREGRPKWLGPIPYDYPDHLQGEAPGDYGFDI 158
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
GLS+DP AF++YFNFEILHARWAML ALG ++PE+LD G EPVWW+VGY+KLQG
Sbjct: 159 LGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDRFGGVQFSEPVWWKVGYAKLQG 218
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+TLDYLGIPGLH+AG+QG++VIA CQ +LM+GPE ARYCGIEALEPLGIFLPGD+NYPGG
Sbjct: 219 DTLDYLGIPGLHIAGAQGILVIAFCQVILMLGPEYARYCGIEALEPLGIFLPGDVNYPGG 278
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
ALFDPL L+KD AFE+LKVKE+KNGRLAMVAWLGFY+QA T KGP+ NL D + DPLH
Sbjct: 279 ALFDPLGLTKDAAAFEDLKVKEMKNGRLAMVAWLGFYVQALVTQKGPIDNLFDFLEDPLH 338
Query: 241 NNLLS 245
NL +
Sbjct: 339 QNLFA 343
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/247 (70%), Positives = 202/247 (81%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
M ETK AA S A +AR+ S+W+G++RP+WLGPIPYDYP +L G PGDYGFD+
Sbjct: 72 MQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDI 131
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGL KDP F K+FNFEILHARWAML ALG ++PEVL+ E VWWRVGY+KL+G
Sbjct: 132 AGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEG 191
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+TLDYLGIPGLH+ G+QG++VIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG
Sbjct: 192 DTLDYLGIPGLHIVGAQGILVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 251
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
LFDPL LSKDP FEELKVKEIKNGRLAMVAWLGFY+QA T KGP++NLLDH+ DPLH
Sbjct: 252 VLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLH 311
Query: 241 NNLLSMV 247
NN ++ +
Sbjct: 312 NNAVTSI 318
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/219 (79%), Positives = 193/219 (88%)
Query: 27 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG RPRWLGP+ YDYP +L GE PGDYGFD+AGL +DP+AF YFNFEILH RWAML
Sbjct: 89 FWYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAML 148
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QG+IVIAICQ
Sbjct: 149 AALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQ 208
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
LLMVGPE ARYCGIEALEPLGI+LPGDINYPGGALFDPL LSKDPVAFEE KVKEIKNG
Sbjct: 209 VLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNG 268
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
RLAMVAW+GFYIQAA TGKGPVQNL +H+SDPLHNN+LS
Sbjct: 269 RLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 169/208 (81%), Positives = 191/208 (91%)
Query: 38 GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 97
GP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YFNFEILH RWAML ALG +VPE+L
Sbjct: 35 GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELL 94
Query: 98 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 157
D+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIAICQALLMVGPE AR
Sbjct: 95 DLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYAR 154
Query: 158 YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 217
YCGIEALEPLG++LPGDINYPGGALFDPL LSKDPVAFE+LKVKEIKNGRLAMVAWLGFY
Sbjct: 155 YCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFY 214
Query: 218 IQAAFTGKGPVQNLLDHISDPLHNNLLS 245
IQAA TGKGP+QNL++H+SDPLHNN+LS
Sbjct: 215 IQAAVTGKGPIQNLVEHLSDPLHNNILS 242
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 167/203 (82%), Positives = 186/203 (91%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
DYP +L GE PGDYGFD+AGL +DP+AF YFNFEILH RWAMLGALG +VPE+LD+ G
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
H VEPVWW+VGY+KLQG+TLDYLGIPGL +AG QG+IVIAICQALLMVGPE ARYCGIE
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARYCGIE 120
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
ALEPLGI+LPGD+NYPGGALFDPL LSKDPVAFEELKVKEIKNGRLAMVAWLGFY+QAA
Sbjct: 121 ALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQAAV 180
Query: 223 TGKGPVQNLLDHISDPLHNNLLS 245
TGKGPVQNL++H+SDPLHNN+LS
Sbjct: 181 TGKGPVQNLIEHLSDPLHNNILS 203
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 150/246 (60%), Positives = 185/246 (75%), Gaps = 5/246 (2%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
E K+A Q + A AR+ES WYGEERP+WLGP+ YDYP+YL G PGDY +D
Sbjct: 47 EYKRAEQQREKELAA----ARDESPWYGEERPKWLGPLSYDYPAYLRGGAPGDYAYDPLQ 102
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L++D F +YF FE+LHARWAMLGALGA +PE+L G +E WW VG +KLQGE
Sbjct: 103 LAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGVSDFLEARWWAVGGAKLQGED 162
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
L+YLG+ GL +AG QG+ +IAICQ LLM GPE AR CGIEALEPLG++LPGD NYPGG L
Sbjct: 163 LNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARACGIEALEPLGLYLPGDKNYPGG-L 221
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL LSKDP +F +L+VKEIKNGRLA+VAW+GF QAA T KGP+ +LLD +DP+HNN
Sbjct: 222 FDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAAQAAVTRKGPIADLLDFAADPVHNN 281
Query: 243 LLSMVK 248
+ + ++
Sbjct: 282 IFAYLR 287
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/229 (62%), Positives = 163/229 (71%), Gaps = 23/229 (10%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KAL WYGE+ P WLG I Y YPSYLTGE+PGDY FD+ GL +DP+ KYFN
Sbjct: 59 KALEEIGNTHFFWYGEDGPPWLGSISYKYPSYLTGEMPGDYDFDIVGLGQDPVELXKYFN 118
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
FEILHARW L + A++P++L+++GA H VEPVWWR GYSKL+ TLDYL I GLHLAG
Sbjct: 119 FEILHARWVTLAFVSAVIPKILNLLGAVHFVEPVWWRAGYSKLKVNTLDYLRIQGLHLAG 178
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
SQG +VIAICQ L VGPE AR CG EAL+PLGI+LP DINYPGGALFDPLNLS DP AF
Sbjct: 179 SQGAVVIAICQILKQVGPEYARXCGTEALKPLGIYLPCDINYPGGALFDPLNLSNDPEAF 238
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
EELKVKE+KNG +L+DHISDP HNNLL
Sbjct: 239 EELKVKEVKNG-----------------------SLIDHISDPFHNNLL 264
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/236 (60%), Positives = 174/236 (73%), Gaps = 2/236 (0%)
Query: 2 LETKKAALQ-DSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
LE +K L+ +++ +A R AR +S W+G RP WLGP+ P +L+GELPGDYG+D
Sbjct: 96 LEAQKPLLRRQAAQQEAERRAARQQSPWFGAARPLWLGPLSTQPPQHLSGELPGDYGWDP 155
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ- 119
AGL +DP +Y E+LHARWAMLGALGA+VPE+L + G+ +E WW VGY+KL
Sbjct: 156 AGLGRDPAKLDRYVELELLHARWAMLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTT 215
Query: 120 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 179
GE L YLG+PGL +AG QGV +IA CQ LLM GPE AR CGI ALEPLG+FLPGD NYPG
Sbjct: 216 GEELAYLGVPGLRVAGGQGVAIIAFCQVLLMFGPEYARACGISALEPLGVFLPGDKNYPG 275
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
G LFDPL LS D +E ++V+EIKNGRLAMVAWLGF QAA T +GPVQNLLD +
Sbjct: 276 GWLFDPLQLSGDAERYEAMRVREIKNGRLAMVAWLGFAAQAAVTRQGPVQNLLDAV 331
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/161 (81%), Positives = 146/161 (90%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
ML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+ LDYLGIPG +AG QGV+VIAI
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 60
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQALLMVGPE ARYCGIEALEPLGI+LPGDINYPGG LFDPL LSKDPVAFE+LKVKEIK
Sbjct: 61 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIK 120
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
NGRLAMVAW GFYIQAA TGKGPVQNL++H+SDPL+NN+LS
Sbjct: 121 NGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 161
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 170/245 (69%), Gaps = 5/245 (2%)
Query: 2 LETKKAALQ-DSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
LE K LQ ++ K +A +AR +S WYG RPR GP+ +L G + GD GFD
Sbjct: 150 LEAKLPELQAEADKTRAAHAEARRQSKWYGPSRPRLPGPL--GSAEHLIGAIAGDAGFDP 207
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
GLSK+ +F KY E+LHARWAMLG +G LVPE+L + G L EPVWW+VG SKL
Sbjct: 208 LGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRG-VDLGEPVWWKVGASKLNS 266
Query: 121 E-TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 179
+ TL++ GI G +AG QG+ +IA CQA+LM GPE ARY GI +LEP+G+FLPGD NYPG
Sbjct: 267 DLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPG 326
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
G FDPLN + D F E VKE+KNGRLAM+A LGF++QAA T GPVQN+LD ++DP
Sbjct: 327 GGPFDPLNYAADADGFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPA 386
Query: 240 HNNLL 244
HNN+
Sbjct: 387 HNNIF 391
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/226 (54%), Positives = 156/226 (69%), Gaps = 4/226 (1%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG RPR GP+ +L GE GD GFD L KDP AF ++ E+LHARWAM
Sbjct: 53 SKWYGASRPRLPGPL--GGAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAM 110
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIAI 144
LG +G +VPE+L + G L EPVWW+VG SKL + TL++ GI G +AG QG+ +IA
Sbjct: 111 LGFVGCMVPELLALRG-VELGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAA 169
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQA+LM GPE ARY GI +LEP+G+FLPGD NYPGG FDPLN + D F + V+EIK
Sbjct: 170 CQAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIK 229
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
NGRLAMVA LG ++QAA T KGPVQN+++ +SDP N+ + V +
Sbjct: 230 NGRLAMVAMLGLFVQAAVTKKGPVQNVMEFVSDPAGENIFTNVARL 275
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 153/232 (65%), Gaps = 2/232 (0%)
Query: 2 LETKKAALQDSSKFKALAR-QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
++ ++ AL K + R +AR S +YG R ++LG + Y+YP++L G L GD GFD
Sbjct: 4 IDRERPALDAEKARKEMERAEARGRSAFYGANRVKFLGDLEYEYPAHLDGTLCGDVGFDP 63
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
L+ ++Y E+LH RWAMLG +GA VPE LD G +L EPVWW+VG +K+
Sbjct: 64 LNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVANLGEPVWWKVGAAKMNS 123
Query: 121 E-TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 179
+ LDYLG G H+AG G+ VIA CQ +LM GPE ARY GI +LEP+G++LPGD +YPG
Sbjct: 124 DIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDYPG 183
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
GA FDP S D FE+ KV EIK+ RLAM+A LG IQA T +GP++NL
Sbjct: 184 GAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQGPIENL 235
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 148/234 (63%), Gaps = 6/234 (2%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+LE + A S+ + L +A S YGE RP L P P +LTG L GD GFD
Sbjct: 146 ILERRPALEAKRSEVERLREEAMEASPLYGEARP--LLPGISSPPPHLTGTLAGDRGFDP 203
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF----HLVEPVWWRVGYS 116
L K P + + E+LHARWAML +G VPE L + GA L EPVWW+VG +
Sbjct: 204 LRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAGALPEGAALAEPVWWKVGAA 263
Query: 117 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN 176
KL GE+L+Y G+ G +AG QGV VIA CQA+LM GPE ARY GI +LEP+G++LPGD N
Sbjct: 264 KLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGPEYARYVGIRSLEPVGVYLPGDAN 323
Query: 177 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
YPGGA FDP LS D F KV EI++GRLAMVA LG + QA TG+GPV N
Sbjct: 324 YPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAMVAMLGCFAQAIVTGEGPVAN 377
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 142/207 (68%), Gaps = 3/207 (1%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S YG R ++LG Y+YP++L G L GD GFD GL KD + + E+LHARWAM
Sbjct: 155 SSLYGARRVKFLGDAEYEYPAHLDGSLCGDAGFDPLGLGKDDLPRMR--ELELLHARWAM 212
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIAI 144
LG +G VPE+L+ G L EPVWW+VG +K+ + +LDY G+ G H+AG G+ +IA
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAA 272
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM GPE ARY GI++LEP+G++LPGD +YPGGA FDP +S D FE+ KV EIK
Sbjct: 273 CQVVLMGGPEYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIK 332
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNL 231
+GRLAM+A LG QA T GP++NL
Sbjct: 333 HGRLAMIAMLGVAAQAFVTRAGPIENL 359
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 136/217 (62%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S+WYGE+RP+WLGP + PSYL+GE PGDYG+D AGLS DP F KY E++HARWAM
Sbjct: 17 SMWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAM 76
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG L PE+L G E VWW+ G LDYLG P L A Q +I I
Sbjct: 77 LGALGCLTPELLAKNGV-SFGEAVWWKAGAQIFAPGGLDYLGNPSLVHA--QSIIAILAS 133
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q LLM E R G E L D YPGG FDPL L+ DP F ELKVKEIKN
Sbjct: 134 QVLLMGAIEGYRVYGGPGGEGL------DKVYPGGDYFDPLGLADDPDTFAELKVKEIKN 187
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL H++DP NN
Sbjct: 188 GRLAMFSMFGFFVQAIVTGKGPLENLESHLADPSVNN 224
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 141/223 (63%), Gaps = 16/223 (7%)
Query: 27 LWYGEERPRWL----------------GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAF 70
+++G+ER RW+ + +PSYL G L GD FD LS
Sbjct: 191 MYFGKERGRWMPRKSVSFFSGGDSDDDASSSFMFPSYLDGTLAGDAQFDPLRLSDTEEKR 250
Query: 71 QKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPG 130
++ E+LH RWAML +G VPE+L GA L EP+WW++G L+G ++YLGI G
Sbjct: 251 RRNVELELLHGRWAMLAVVGVCVPEILSRSGALELSEPIWWKIGEKVLEGIDVNYLGIEG 310
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
H+AG+ G+I IA CQA+LM GPE ARY GIE+LEP+G++LPGD NYPGG FDP NLS
Sbjct: 311 FHIAGASGIIGIAFCQAVLMGGPEYARYVGIESLEPVGVYLPGDTNYPGGGPFDPFNLSA 370
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233
D EL+V E+K+GRLAM+A LG + QA T +GPV N+L+
Sbjct: 371 DAERDVELRVSEVKHGRLAMIAMLGVFAQAFVTREGPVANVLE 413
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 144/221 (65%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGSP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 144/221 (65%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 9 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 68
L+D + A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 35 LRDVAAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE 94
Query: 69 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 128
AF + E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG
Sbjct: 95 AFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGN 154
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 188
P +L +Q ++ + Q +LM E R G++ + G+ YPGG FDPL L
Sbjct: 155 P--NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGL 206
Query: 189 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
+ DPV F ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ DP+ NN
Sbjct: 207 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 260
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 9 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 68
L+D + A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 32 LRDVAAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 69 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 128
AF + E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG
Sbjct: 92 AFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGN 151
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 188
P +L +Q ++ + Q +LM E R G++ + G+ YPGG FDPL L
Sbjct: 152 P--NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGL 203
Query: 189 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
+ DPV F ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ DP+ NN
Sbjct: 204 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 257
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 142/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 214 ELKNGRLAMFPMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 147/227 (64%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 145/215 (67%), Gaps = 13/215 (6%)
Query: 28 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 87
WYGE RP++LGP P+YLTGE PGDYG+D AGLS DP+ F+ Y E++HARWAMLG
Sbjct: 89 WYGENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLG 148
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG + PE+L+ G F+L PVW++ G + + +DYLG P +L +Q + + Q
Sbjct: 149 ALGCIFPELLNSAG-FNL--PVWFKAGGTIFE-NGIDYLGNP--NLVHAQSALAVLSVQV 202
Query: 148 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
+LM E R+ G PLG P D+ YPGGA FDPL +KDP ELKVKEIKNGR
Sbjct: 203 VLMGASEAYRFNG----GPLG--EPADVLYPGGA-FDPLGFAKDPSKAAELKVKEIKNGR 255
Query: 208 LAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
LAM A LG+Y+QA TGKGP++NL +H++DP NN
Sbjct: 256 LAMTAMLGYYVQALATGKGPIENLSEHLADPSKNN 290
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 147/227 (64%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSQGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYGE+RP++LGP PSY TGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 147/227 (64%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQA+LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQAVLMGAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 148/230 (64%), Gaps = 10/230 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEVVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 146/227 (64%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 142/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DAIYPGGA-FDPLGLADDPDAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL+DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 253
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 144/241 (59%), Gaps = 12/241 (4%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
KKAA +K A A+ A E WYG +R +WLGP + P+YLTGE PGDYG+D AGLS
Sbjct: 19 KKAAGTKQTK-AAPAKSAGIE--WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLS 75
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F+KY E++HARWA+LGALG L PE+L EPVW++ G LD
Sbjct: 76 ADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLD 135
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ Q +LM E R G A E L PG+ FD
Sbjct: 136 YLGSPALIHA--QNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGES-------FD 186
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
PL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP+QNL DH++DP NN
Sbjct: 187 PLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAF 246
Query: 245 S 245
+
Sbjct: 247 A 247
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 143/226 (63%), Gaps = 10/226 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
NGRLAM + GF++QA TGKGP++NL D I+DP+ NN + +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDQINDPVANNAWAFATNF 261
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 9 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 68
L+D + + R + + LWYG +R ++LGP PSYL+GE PGDYG+D AGLS DP
Sbjct: 30 LRDVAAAASNGRISMSNELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSADPE 89
Query: 69 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 128
AF + E++H RWAMLGALG + PEVL EPVW++ G LDYLG
Sbjct: 90 AFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGN 149
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 188
P +L +Q ++ + Q LLM E R G++ + G+ YPGG FDPL L
Sbjct: 150 P--NLVHAQSILAVLGSQVLLMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGL 201
Query: 189 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
+ DPV F ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+ DP+ NN
Sbjct: 202 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 255
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 146/227 (64%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 140/226 (61%), Gaps = 8/226 (3%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 39 ASGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 99 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 156
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
Q ++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F
Sbjct: 157 QSILAVLGFQVILMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGLADDPVTFA 210
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ DP+ NN
Sbjct: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 256
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 145/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ +++ A ++S+WYG +RP++LGP + PSYLTGE GDYG+D AGLS DP F +
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +++ + ++S+WYG +RP+WLGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 38 KTVSKSSGSDSIWYGADRPKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 97
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 98 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 155
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 156 -QSILAIWASQVILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTF 207
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 254
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 253
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 143/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPELLSKNGV-QFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 162 CQVVLMGFVEGYRVGG----GPLGEDL--DKLYPGGA-FDPLGLADDPEAFAELKVKELK 214
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGPV+NL+DHI+DP+ NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPVENLVDHIADPVANN 252
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 145/229 (63%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNF 261
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 137/223 (61%), Gaps = 8/223 (3%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELK
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGP++NLLDHI DP+ NN
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDDPVANN 253
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 145/229 (63%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNF 261
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 145/229 (63%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNF 261
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 145/229 (63%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNF 261
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 147/233 (63%), Gaps = 16/233 (6%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G + LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFREGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
Q ++ I CQ +LM E R G E + PL YPGG+ FDPL L+ DP
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAGGPLGEVVNPL---------YPGGS-FDPLGLADDP 203
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 204 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 143/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 162 CQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPDAFAELKVKELK 214
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 145/229 (63%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 163 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNF 261
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 KSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 162 CQVVLMGFVEGYRVGG----GPLGEGL--DAIYPGGA-FDPLGLADDPDAFAELKVKEIK 214
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 252
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 145/229 (63%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 164 SQVVLMGLIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNF 262
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLAEDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 145/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCDFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSTFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 138/219 (63%), Gaps = 8/219 (3%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
+ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RW
Sbjct: 42 SNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 101
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143
AMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 102 AMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVL 159
Query: 144 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
Q LLM E R G++ + G+ YPGG FDPL L+ DPV F ELKVKEI
Sbjct: 160 GFQVLLMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEI 213
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KNGRLAM + GF+IQA TGKGP++NLLDH+ DP+ NN
Sbjct: 214 KNGRLAMFSMFGFFIQAIVTGKGPLENLLDHLDDPVANN 252
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +++ + ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 40 KTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 99
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 100 LEVIHARWAMLGALGCLTPELLAKSG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 157
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 158 -QSILAIWACQVILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTF 209
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 21 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 80
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 81 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 138
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 139 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 190
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 245
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A+ + SLWYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKAKPVSSGSLWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 155 A--QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 147/240 (61%), Gaps = 13/240 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
A L+D + A R ++ LWYG +R ++LGP PSYL GE PGDYG+D AGLS
Sbjct: 26 SNAPLRDIAA-AATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLS 84
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP AF + E++H RWAMLGALG + PEVL+ EPVW++ G LD
Sbjct: 85 ADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLD 144
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGAL 182
YLG P +L +Q ++ + Q +LM E R G+ + GD N YPGG
Sbjct: 145 YLGNP--NLVHAQSILAVLGFQVVLMGLVEGYRINGLPGV--------GDGNDLYPGGQY 194
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH++DP+ NN
Sbjct: 195 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 136/218 (62%), Gaps = 9/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP D PSYLTGE PGDYG+D AGLS DP F++Y E++HARWA
Sbjct: 34 DSVWYGPDRPQFLGPFSGDTPSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWA 93
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G Q LDYLG +L +Q ++ I
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NANLVHAQSILAILG 151
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G E L PGD FDPL L+ DP F ELK+KEIK
Sbjct: 152 CQVVLMGAIEAYRVNGGPLGEGLDPLYPGD-------KFDPLGLADDPDTFAELKIKEIK 204
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++N +H++DP N
Sbjct: 205 NGRLAMFSMFGFFVQAVVTGKGPIENWAEHVADPFSVN 242
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 141/221 (63%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 47 ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG L PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCLFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
CQ +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 164 CQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 143/226 (63%), Gaps = 10/226 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 AQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN + +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNF 261
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 142/228 (62%), Gaps = 12/228 (5%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A R ++ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF +
Sbjct: 37 ATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP--NLVHA 154
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVA 194
Q ++ + Q +LM E R G+ + GD N YPGG FDPL L+ DPV
Sbjct: 155 QSILAVLGFQVVLMGLVEGYRINGLPGV--------GDGNDLYPGGQYFDPLGLADDPVT 206
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
F ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH++DP+ NN
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 151/243 (62%), Gaps = 19/243 (7%)
Query: 5 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPG 179
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YPG
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL---------YPG 191
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
GA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGPVQNL DH++DP+
Sbjct: 192 GA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPV 250
Query: 240 HNN 242
NN
Sbjct: 251 ANN 253
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ +++ A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTTAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFNEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLGDHITDPVNNN 254
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ +
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAVWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 SQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPINNN 254
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPELLAKNGV-KFGESVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 CQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 149/244 (61%), Gaps = 17/244 (6%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 5 LVKKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 63
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 64 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEG 122
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYP 178
LDYLG P +L +Q ++ I CQ +LM E R G E L+PL YP
Sbjct: 123 GLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL---------YP 171
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 172 GGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 230
Query: 239 LHNN 242
+ NN
Sbjct: 231 VANN 234
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/242 (48%), Positives = 147/242 (60%), Gaps = 16/242 (6%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 63
+K + D +A +S+WYG +RP++LGP PSYLTGE PGDYG+D AGL
Sbjct: 24 VRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGL 83
Query: 64 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 123
S DP F K E++H+RWAMLGALG + PE+L G E VW++ G L
Sbjct: 84 SADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV-QFGEAVWFKAGAQIFSEGGL 142
Query: 124 DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGG 180
DYLG P +L +Q ++ I Q +LM E R G E L+PL YPGG
Sbjct: 143 DYLGNP--NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGG 191
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
A FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP+
Sbjct: 192 A-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVA 250
Query: 241 NN 242
NN
Sbjct: 251 NN 252
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTTAKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG++ PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGSIFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNN 254
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 146/230 (63%), Gaps = 10/230 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/227 (51%), Positives = 145/227 (63%), Gaps = 10/227 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 41 AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 101 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 157
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G EPLG + D YPGG+ FDPL L++DP AF EL
Sbjct: 158 ILAIWACQVVLMGAVEGYRVAG----EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAEL 210
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWS 257
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +++ + ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 KTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I C
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIKN
Sbjct: 164 QVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A+ + S WYG R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G EPLG + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRVAG----EPLGEVV--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 145/230 (63%), Gaps = 10/230 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 139/224 (62%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E+
Sbjct: 39 SRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEV 98
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 99 IHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 156
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 157 ILAVLGFQVVLMGLVEGFRINGLPGVG------EGNNLYPGGQYFDPLGLADDPVTFAEL 210
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDHI +P+ NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 254
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 141/221 (63%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 163 VQVVLMGFVEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGPV+NL DH++DP+ NN
Sbjct: 213 ELKNGRLAMTSMFGFFVQAIVTGKGPVENLYDHVADPVANN 253
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 139/224 (62%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E+
Sbjct: 37 SRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEV 96
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 97 IHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 154
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 155 ILAVLGFQVVLMGLVEGFRINGLPGVG------EGNNLYPGGQYFDPLGLADDPVTFAEL 208
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDHI +P+ NN
Sbjct: 209 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 252
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 141/222 (63%), Gaps = 9/222 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S +YG ER WLGP+ PSYLTGE PGDYG+D AGLS DP F++Y E++HARWAM
Sbjct: 51 SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAM 110
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G + EPVW++ G Q LDYLG PGL A Q ++ C
Sbjct: 111 LGALGCVTPELLAKNGT-PIAEPVWFKAGAQIFQEGGLDYLGNPGLVHA--QSILATLAC 167
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G A E L D +PGG FDPL L++DP AF ELKVKEIKN
Sbjct: 168 QVILMGAIEGFRVNGGPAGEGL------DKLHPGGPWFDPLALAEDPDAFAELKVKEIKN 221
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
GRLAM + GF++QA TG+GP++NL H+++P NN +
Sbjct: 222 GRLAMFSMFGFFVQAIVTGQGPIENLESHLANPGVNNAFAFA 263
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 145/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 57 KTAAKAKPVSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKN 116
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 117 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 175
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 176 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 226
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 227 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 275
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + + WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKQLSSSNPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 147/244 (60%), Gaps = 17/244 (6%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LVKKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEG 142
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYP 178
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YP
Sbjct: 143 GLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL---------YP 191
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 192 GGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
Query: 239 LHNN 242
NN
Sbjct: 251 TANN 254
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ +++ AR++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS D F +
Sbjct: 39 RTVSKSARSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRE 98
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ + + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVNKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 145/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 139/226 (61%), Gaps = 8/226 (3%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDHI +P+ NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 255
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKPVSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 149/250 (59%), Gaps = 16/250 (6%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 63
+K + D +A +S+WYG +RP++LGP PSYLTGE PGDYG+D AGL
Sbjct: 24 VRKVGVSDGRVSMRRTVKAAPQSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGL 83
Query: 64 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 123
S DP F K E++HARWAMLGALG + PE+L G E VW++ G L
Sbjct: 84 SADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNGV-KFGEAVWFKAGSQIFSEGGL 142
Query: 124 DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGG 180
DYLG P +L +Q ++ I Q +LM E R G E L+PL YPGG
Sbjct: 143 DYLGNP--NLIHAQSILAIWATQVVLMGFIEGYRVGGGPLGEGLDPL---------YPGG 191
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
A FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 192 A-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVA 250
Query: 241 NNLLSMVKSM 250
NN S +
Sbjct: 251 NNAWSYATNF 260
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 149/244 (61%), Gaps = 17/244 (6%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L +K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LVSKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEG 142
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYP 178
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YP
Sbjct: 143 GLDYLGNP--NLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL---------YP 191
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 192 GGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
Query: 239 LHNN 242
+NN
Sbjct: 251 ANNN 254
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ +++ A ++++WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 40 RTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 99
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 100 LEVIHARWAMLGALGCLTPELLAKSG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 157
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 158 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 209
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIITGKGPIENLLDHLADPVANN 253
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKPVSSSSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 140/221 (63%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 164 SQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP NN
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 143/226 (63%), Gaps = 10/226 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP ELKVKE+K
Sbjct: 161 CQVVLMGFIEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPDTAAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
NGRLAM + GF++QA TGKGPV+NL DH++DP++NN + +
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPVENLFDHVADPVNNNAWAFATNF 259
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PEVL G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEVLSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGS-FDPLGLADDPEAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH+SDP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLSDPVANN 253
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGLIEGYRVGG----GPLGEGL--DKIYPGGS-FDPLGLADDPEAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGPV+NL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVENLFDHLADPVANN 253
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 141/231 (61%), Gaps = 9/231 (3%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
+S + + + +S+WYG +RP++LGP D PSYLTGE PGDYG+D AGLS DP F+
Sbjct: 21 TSMRRTQKKSSAPDSVWYGPDRPQFLGPFSGDCPSYLTGEFPGDYGWDTAGLSADPETFR 80
Query: 72 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
+Y E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG
Sbjct: 81 RYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NA 138
Query: 132 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
+L +Q ++ I CQ +LM E R G E L PGD FDPL L+ D
Sbjct: 139 NLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPLYPGD-------KFDPLGLADD 191
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
P F ELK+KEIKNGRLAM + GFY+QA TGKGP++N +H+++P N
Sbjct: 192 PDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPIENWAEHVANPFSVN 242
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 128 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 187
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
G LG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 188 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 245
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 246 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 298
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
RLAM + LGFY+QA TGKGPV+N +HI+DP N L++ +
Sbjct: 299 RLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLATA 341
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 136/224 (60%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
R LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E+
Sbjct: 41 GRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEV 100
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +Q
Sbjct: 101 IHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q LLM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 159 ILAVLGFQVLLMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 212
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NL DH+ DP+ NN
Sbjct: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSFVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPINNN 254
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 137/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 40 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 99
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PEVL + EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNP--NLVHAQSILAVLG 157
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q LLM E R G++ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 158 FQVLLMGAVEGFRINGLDGVG------NGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 211
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++N LDH+ +P+ NN
Sbjct: 212 NGRLAMFSMFGFFVQAIVTGKGPLENWLDHLDNPVANN 249
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 162 SQVVLMGLIEGYRVGG----GPLGEGL--DKLYPGGA-FDPLGLADDPEAFAELKVKELK 214
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 154 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 204
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 205 AFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 128 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 187
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 188 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 245
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 246 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 298
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
RLAM + LGFY+QA TGKGPV+N +HI+DP N L+
Sbjct: 299 RLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 337
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 151/243 (62%), Gaps = 19/243 (7%)
Query: 5 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPG 179
LDYLG P +L +Q ++ I + +LM E R G E L+PL YPG
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATRVVLMGFVEGYRVGGGPLGEGLDPL---------YPG 191
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
GA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGPVQNL DH++DP+
Sbjct: 192 GA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPV 250
Query: 240 HNN 242
NN
Sbjct: 251 ANN 253
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 137/223 (61%), Gaps = 8/223 (3%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELK
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 137/223 (61%), Gaps = 8/223 (3%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELK
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 77
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 78 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 134
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 135 SQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIK 187
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 188 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 142/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGPV+NLLDH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 143/229 (62%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILERNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 163 TQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDAFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP+QNL DH++DP+ NN + +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNF 261
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 115 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 174
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 175 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 232
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 233 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 285
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
RLAM + LGFY+QA TGKGPV+N +HI+DP N L+
Sbjct: 286 RLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 324
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 139/224 (62%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 37 GKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEV 96
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 97 IHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNP--NLVHAQS 154
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 155 ILAVLGFQVVLMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 208
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ DP+ NN
Sbjct: 209 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 252
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 146/232 (62%), Gaps = 10/232 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 257
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 149/237 (62%), Gaps = 13/237 (5%)
Query: 9 LQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 27 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 86
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDY 145
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 146 LGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDP 196
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 197 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 149/237 (62%), Gaps = 13/237 (5%)
Query: 9 LQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 27 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 86
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDY 145
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 146 LGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDP 196
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 197 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 139/226 (61%), Gaps = 8/226 (3%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 127 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 186
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
G LG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 187 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 244
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 245 VILMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 297
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
RLAM + LGFY+QA TGKGPV+N +HI+DP N L++ +
Sbjct: 298 RLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLATA 340
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 149/237 (62%), Gaps = 13/237 (5%)
Query: 9 LQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 27 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 86
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDY 145
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 146 LGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDP 196
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 197 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A +Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKVKQVASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 146/244 (59%), Gaps = 17/244 (6%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LVKKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEG 142
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYP 178
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YP
Sbjct: 143 GLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL---------YP 191
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 192 GGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
Query: 239 LHNN 242
NN
Sbjct: 251 TANN 254
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ + + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVNKSAGSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCVTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 157 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTF 208
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILEKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 VQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP+QNL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILEKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 VQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP+QNL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 138/224 (61%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
AR + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 38 ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEV 97
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 98 IHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP--NLVHAQS 155
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q +LM E R G+ + G+ YPGG FDPL L+ DP F EL
Sbjct: 156 ILAVLGFQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPTTFAEL 209
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 VQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP+QNL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGLIEGYRIGG----GPLGEGL--DSLYPGGA-FDPLGLADDPEAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGPV+NL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPVANN 253
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + ++S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAGKTKNVSSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVILMGAIEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 138/224 (61%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 41 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 100
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 101 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 159 ILAVLGFQVILMGLVEGYRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 212
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 148/233 (63%), Gaps = 10/233 (4%)
Query: 12 SSKFKALARQARNES--LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA 69
S++ + + R +++ S +WYG +RP +LGP + PSYL GE PGDYG+D AGLS DP +
Sbjct: 30 SNQARVVMRGSKSSSGSMWYGPDRPLFLGPFSGNTPSYLKGEFPGDYGWDTAGLSADPES 89
Query: 70 FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 129
F + E++H RWAMLGALG + PE+L L EPVW++ G LDYLG P
Sbjct: 90 FARNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNP 149
Query: 130 GLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 189
+L +Q ++ + Q +LM E R G+ G+ GD+ YPGG FDPL L+
Sbjct: 150 --NLIHAQSILAVWAVQVVLMGAVEAYRTNGLP-----GVGEGGDL-YPGGKYFDPLGLA 201
Query: 190 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
DP ELKVKE+KNGRLAM + GF++QA TGKGP++NLLDH+++P+ NN
Sbjct: 202 DDPETLAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLANPVSNN 254
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 112 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 171
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 172 GALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHA--QSILAILACQ 229
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM G E R G A E L D PGGA FDPL L+ DP F ELKVKEIKNG
Sbjct: 230 VVLMGGAEAYRVNGGPAGEGL------DAINPGGA-FDPLGLADDPDTFAELKVKEIKNG 282
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
RLAM + LGFY+QA TGKGPV+N +HI+DP N L
Sbjct: 283 RLAMFSMLGFYVQAIATGKGPVENWAEHIADPSGVNGL 320
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 142/218 (65%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGIVFPEILEKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 VQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP+QNL DH++DP+ NN
Sbjct: 216 NGRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGS-FDPLGLADDPEAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 150/243 (61%), Gaps = 19/243 (7%)
Query: 5 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPG 179
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YPG
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL---------YPG 191
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
GA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA T KGPVQNL DH++DP+
Sbjct: 192 GA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTDKGPVQNLYDHVADPV 250
Query: 240 HNN 242
NN
Sbjct: 251 ANN 253
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 143/229 (62%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP +F ELKVK
Sbjct: 163 TQVVLMGFVEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDSFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP+QNL DH++DP+ NN + +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNF 261
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ A + S WYG +R ++LGP + PSYLTGE P DYG+D AGLS DP F K E+
Sbjct: 42 AKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+ G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELFARNG-IKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF EL
Sbjct: 159 ILAIWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLAEDPEAFAEL 211
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 147/237 (62%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KSVAKAKPASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 263
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 138/224 (61%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 40 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 99
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 100 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 157
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DPV F EL
Sbjct: 158 ILAVLGFQVILMGLVEGYRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 211
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 136/209 (65%), Gaps = 4/209 (1%)
Query: 29 YGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGL-SKDPMAFQKYFNFEILHARWAML 86
YG R ++L Y +P +L G L GD GFD GL S P +Y E+LH RWAML
Sbjct: 176 YGPTRRKFLPDGFGYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAML 235
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE--TLDYLGIPGLHLAGSQGVIVIAI 144
G +GA VPE L G L EPVWW+VG +KL LDYLG+ G H+AGS G+ VIA
Sbjct: 236 GVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAA 295
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM GPE AR GI++L P+G++LPGD +YPGGA FDP +S D FE KV E+K
Sbjct: 296 CQLVLMGGPEYARKVGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMK 355
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233
+GRLAMVA LG + QA TG GPV+NL +
Sbjct: 356 HGRLAMVAMLGCFAQAWATGVGPVENLTE 384
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 147/237 (62%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 3 KTAAKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 62
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 63 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 121
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 122 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 172
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 173 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 229
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 142/225 (63%), Gaps = 10/225 (4%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
+ + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E
Sbjct: 37 MRKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELE 96
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A Q
Sbjct: 97 VIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--Q 153
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F E
Sbjct: 154 SILAIWACQVILMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTFAE 206
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
LKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 251
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + ++S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAGKTKSVSSDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFTKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVILMGAIEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 143/229 (62%), Gaps = 16/229 (6%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP +F ELKVK
Sbjct: 163 TQVVLMGFVEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDSFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
E+KNGRLAM + GF++QA TGKGP+QNL DH++DP+ NN + +
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNF 261
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/244 (47%), Positives = 150/244 (61%), Gaps = 13/244 (5%)
Query: 2 LETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 58
L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+
Sbjct: 10 LSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGW 69
Query: 59 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 118
D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 70 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIF 128
Query: 119 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 178
LDYLG P L A Q ++ I CQ +LM E R G PLG D YP
Sbjct: 129 SEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--DPIYP 180
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 181 GGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 239
Query: 239 LHNN 242
++NN
Sbjct: 240 VNNN 243
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 42 KVAASSSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 102 HCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 158
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF ELK
Sbjct: 159 LAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLAEDPEAFAELK 211
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 146/244 (59%), Gaps = 17/244 (6%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LVKKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEG 142
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYP 178
LDYLG P +L +Q ++ I Q LM E R G E L+PL YP
Sbjct: 143 GLDYLGNP--NLIHAQSILAIWASQVGLMGLIEGYRVGGGPLGEGLDPL---------YP 191
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 192 GGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
Query: 239 LHNN 242
NN
Sbjct: 251 TANN 254
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 141/222 (63%), Gaps = 10/222 (4%)
Query: 21 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
++ ++S+WYG +RP++LGP + PSYLTGE GDYG+D AGLS DP F + E++H
Sbjct: 42 KSTSDSIWYGADRPKYLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIH 101
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
ARWAMLGALG L PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 102 ARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSIL 158
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I Q +LM E R G PLG D YPGG+ FDPL L+ DP F ELKV
Sbjct: 159 AIWASQVVLMGAVEGYRVAG----GPLGEIT--DPIYPGGS-FDPLGLADDPDTFAELKV 211
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 253
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LG + + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 31 KTAAKAKQVSSSSPWYGSDRVLYLGSLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 90
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW+ G LDYLG P L
Sbjct: 91 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFMAGSQIFSEGGLDYLGNPSLVH 149
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 150 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 200
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 201 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 249
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTATKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 139/218 (63%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 162 CQVVLMGFIEGYRVGG----GPLGEGL--DSIYPGGA-FDPLGLADDPEAFAELKVKEIK 214
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++D NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADLAANN 252
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 143/225 (63%), Gaps = 10/225 (4%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
+ + + ++S+WYG +RP++LGP+ + PSYLTGE GDYG+D AGLS DP F + E
Sbjct: 37 MRKASSSDSIWYGADRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELE 96
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 97 VIHARWAMLGALGCVTPELLAKNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--Q 153
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP F E
Sbjct: 154 SILAIWASQVILMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTFAE 206
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
LKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANN 251
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 152/251 (60%), Gaps = 18/251 (7%)
Query: 3 ETKKAALQDSSKFKALARQ--------ARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 54
+ +AA+ S K AR+ + +S WYG ERP +LG + PSYLTGE PG
Sbjct: 8 SSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPG 67
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 68 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAG 126
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 174
Q LDYLG P +L +Q ++ I Q LLM E R G PLG L D
Sbjct: 127 AQIFQEGGLDYLGNP--NLVHAQSILAILGTQVLLMGAIEGYRVNG----GPLGEGL--D 178
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 234
YPGG+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP+QNL DH
Sbjct: 179 KLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDH 237
Query: 235 ISDPLHNNLLS 245
+++P NN +
Sbjct: 238 LANPGTNNAFA 248
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGWGL--DKIYPGGS-FDPLGLADDPEAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 142/226 (62%), Gaps = 10/226 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 VQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVTDPVANNAWSYATNF 259
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 149/241 (61%), Gaps = 12/241 (4%)
Query: 4 TKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
+AA D+ + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 18 VSRAAGVDAGGRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 77
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 78 GLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEG 136
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
LDYLG P +L +Q ++ I CQ +LM E R G PLG L D YPGGA
Sbjct: 137 GLDYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA 188
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+ N
Sbjct: 189 -FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 247
Query: 242 N 242
N
Sbjct: 248 N 248
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 149/239 (62%), Gaps = 12/239 (5%)
Query: 6 KAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 63
+AA D+ + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGL
Sbjct: 20 RAAGVDAGDRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 79
Query: 64 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 123
S DP F + E++H+RWAMLGALG + PE+L G E VW++ G L
Sbjct: 80 SADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGL 138
Query: 124 DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 183
DYLG P +L +Q ++ I CQ +LM E R G PLG L D YPGGA F
Sbjct: 139 DYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-F 189
Query: 184 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
DPL L+ DP ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 190 DPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 142/232 (61%), Gaps = 10/232 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+ G E VW + G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELFARNGV-KFGEAVWLKAGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ LLM E R G PLG+ + D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVLLMGAVEGYRVAG----GPLGVVV--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKE KNGRLAM + GF+IQA TGKGP++NL DH+ DP++NN S
Sbjct: 207 AFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWS 258
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 137/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 44 NDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R I L +G G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 162 FQIVLMGLVEGFR---INGLPDVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 146/241 (60%), Gaps = 10/241 (4%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K L ++ R + +S+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LSRKVGNLGEARTVMRRTRASTPDSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTA 84
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G +
Sbjct: 85 GLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG-IKFGEAVWFKAGSQIFKEG 143
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
LDYLG P +L +Q ++ I Q +LM E R G PLG L D YPGGA
Sbjct: 144 GLDYLGNP--NLVHAQSILAIWASQVILMGAVEGYRVGG----GPLGEGL--DKIYPGGA 195
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP F ELKVKE+KNGRLAM + GF+ QA TGKGP++NLLDH+ +P N
Sbjct: 196 -FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFTQAIVTGKGPIENLLDHLDNPTVN 254
Query: 242 N 242
N
Sbjct: 255 N 255
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 139/226 (61%), Gaps = 12/226 (5%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E+
Sbjct: 39 GKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEV 98
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 99 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 156
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFE 196
++ + Q +LM E R G+ + GD N YPGG FDPL L+ DPV F
Sbjct: 157 ILAVLGFQVVLMGLVEGFRINGLPGV--------GDGNNLYPGGQYFDPLGLADDPVTFA 208
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 254
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K A+ + S WYG +R ++LGP + PSYLT E PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKPVSSSSPWYGPDRVKYLGPFSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF
Sbjct: 155 -QSILAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 145/243 (59%), Gaps = 14/243 (5%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 62
T K AL +K ++ QA E WYG +R +WLGP PSYLTGE PGDYG+D AG
Sbjct: 13 TAKTALVKGNK--RVSVQAAVE--WYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAG 68
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
LS DP F+KY E++HARWAMLGALG + PE+L G E VW+R G +
Sbjct: 69 LSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGG 128
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLG P L A S G IVI+ Q +LM E R G A E L PG+
Sbjct: 129 LDYLGSPALIHAQSIGAIVIS--QVILMGLIEGYRVNGGPAGEGLDPLYPGES------- 179
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DP F ELK+KEIKNGRLAM + GFY+QA TGKGPV+N +HI+DP N
Sbjct: 180 FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTAN 239
Query: 243 LLS 245
S
Sbjct: 240 AFS 242
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/231 (49%), Positives = 143/231 (61%), Gaps = 10/231 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 102
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 160 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 212
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S +
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSFATNF 263
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 141/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 48 ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 107
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 108 RWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA--QSILA 164
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 165 IWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPDAFAELKVK 217
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 218 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 258
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 145/232 (62%), Gaps = 10/232 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 155 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH+SDP++NN S
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 45 QSIWYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPELLSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 161
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 162 VQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDAFAELKVK 211
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGPV+NL DH++DP NN
Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPATNN 252
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 143/226 (63%), Gaps = 10/226 (4%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
++ + + ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 36 SMRKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNREL 95
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 EVIHARWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA-- 152
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP F
Sbjct: 153 QSILAIWACQVILMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDTFA 205
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 251
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 140/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 VQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 136/224 (60%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E+
Sbjct: 43 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEV 102
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 103 IHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 160
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q LLM E R G+ + G+ YPG FDPL L+ DP F EL
Sbjct: 161 ILAVLGFQVLLMGLVEGFRINGLPGVG------EGNNLYPGDQYFDPLGLADDPATFAEL 214
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ DP+ NN
Sbjct: 215 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 136/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 42 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 159
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G+ + G+ YPGG FDPL L+ DP F ELKVKEIK
Sbjct: 160 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPTTFAELKVKEIK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 137/219 (62%), Gaps = 8/219 (3%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RW
Sbjct: 41 SNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 100
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143
AMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 101 AMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVL 158
Query: 144 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
Q +LM E R G+ + G+ YPGG FDPL L+ DP F ELKVKEI
Sbjct: 159 GFQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPATFAELKVKEI 212
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKE+K
Sbjct: 163 SQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLA + GF++QA TGKGPV+NLLDH++DP+ NN
Sbjct: 216 NGRLATFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 142/223 (63%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 160 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 212
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 144/232 (62%), Gaps = 10/232 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 38 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 97
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 98 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 156
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 157 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 207
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH+SDP++NN S
Sbjct: 208 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 259
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/231 (49%), Positives = 143/231 (61%), Gaps = 10/231 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 102
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 160 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 212
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S +
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSFATNF 263
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 139/215 (64%), Gaps = 10/215 (4%)
Query: 28 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 87
WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLG
Sbjct: 44 WYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 103
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ
Sbjct: 104 ALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQV 160
Query: 148 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
+LM E R G PLG + D YPGG+ FDPL L++DP AF ELKVKEIKNGR
Sbjct: 161 VLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGR 213
Query: 208 LAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
LAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 214 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 136/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 44 NDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 162 FQIVLMGLVEGFRINGLPDVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 142/224 (63%), Gaps = 10/224 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF EL
Sbjct: 159 ILAIWACQVVLMGAIEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAEL 211
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NL+DH++DP++NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLVDHLADPVNNN 255
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 139/224 (62%), Gaps = 8/224 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ + + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 42 GKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 102 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 159
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ + Q +LM E R G++ + G+ YPGG FDPL L+ DP F EL
Sbjct: 160 ILAVLGFQVVLMGLVEGFRINGLDGVG------EGNNLYPGGQYFDPLGLADDPATFAEL 213
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 214 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 136/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 166 FQVVLMGLVEGYRINGLPGVG------EGNDLYPGGPYFDPLGLADDPVTFAELKVKEIK 219
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 220 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 38 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVI 97
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 98 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 154
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 155 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 207
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKE+KNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 208 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL + DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGPADDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 136/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 166 FQVVLMGLVEGYRINGLPGVG------EGNDLYPGGPYFDPLGLADDPVTFAELKVKEIK 219
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 220 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 142/224 (63%), Gaps = 10/224 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGNSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF EL
Sbjct: 159 ILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAEL 211
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K ++ A +S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAAGKSKVATIDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWACQVVLMGAIEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELELIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 148/244 (60%), Gaps = 17/244 (6%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L +K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDY +D A
Sbjct: 25 LVSKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEG 142
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYP 178
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YP
Sbjct: 143 GLDYLGNP--NLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL---------YP 191
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GGA FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 192 GGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
Query: 239 LHNN 242
+NN
Sbjct: 251 ANNN 254
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 144/232 (62%), Gaps = 10/232 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH+SDP++NN S
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 142/223 (63%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 102
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF ELK
Sbjct: 160 LAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELK 212
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 33 KTVAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 92
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 93 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 151
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 152 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 202
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 203 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 146/241 (60%), Gaps = 10/241 (4%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A + + A +A + S+WYG +RP +LGP PSYL+GE PGDYG+D A
Sbjct: 23 LSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTA 82
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 83 GLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGSQIFAEG 141
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPGG+
Sbjct: 142 GLDYLGNPSLVHA--QSILAIWACQVILMGAVEGYRVAG----GPLGEVE--DPIYPGGS 193
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP N
Sbjct: 194 -FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVN 252
Query: 242 N 242
N
Sbjct: 253 N 253
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 38 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 97
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 98 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 154
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 155 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 207
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKE+KNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 208 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 140/231 (60%), Gaps = 12/231 (5%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
K ++ QA E WYG +R +WLGP PSYLTGE PGDYG+D AGLS DP F+KY
Sbjct: 20 KRVSVQAAVE--WYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYR 77
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
E++HARWAMLGALG + PE+L G E VW+R G + LDYLG P L A
Sbjct: 78 ETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHA 137
Query: 135 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
S G IVI+ Q +LM E R G A E L PG+ FDPL L+ DP
Sbjct: 138 QSIGAIVIS--QVILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDT 188
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
F ELK+KEIKNGRLAM + GFY+QA TGKGPV+N +H++DP N S
Sbjct: 189 FAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFS 239
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 138/222 (62%), Gaps = 10/222 (4%)
Query: 22 ARNESLWYGEERPRWLGPI-PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
ARN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 21 ARNAVEWYGPDRAKWLGPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
ARWAMLGALG + PE+L L E VW++ G Q LDYLG P L A Q ++
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 138
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G PLG L D+ +P G FDPL L+ DP F ELKV
Sbjct: 139 AILGCQVVLMGLIEAYRVNG----GPLGKGL--DVLHP-GEKFDPLGLADDPDTFAELKV 191
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KEIKNGRLAM + GFY+QA TGKGP++N +H++DP N
Sbjct: 192 KEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 139/226 (61%), Gaps = 12/226 (5%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E+
Sbjct: 4 GKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEV 63
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 64 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 121
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFE 196
++ + Q +LM E R G+ + GD N YPGG FDPL L+ DPV F
Sbjct: 122 ILAVLGFQVVLMGLVEGFRINGLPGV--------GDGNNLYPGGQYFDPLGLADDPVTFA 173
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 174 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 219
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 135/218 (61%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 43 SDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNP--NLVHAQSILAVLG 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G+ + G+ YPGG FDPL L+ DPV ELKVKEIK
Sbjct: 161 FQVVLMGLVESFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTLAELKVKEIK 214
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 252
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 141/224 (62%), Gaps = 10/224 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+ G E VW++ G LDYLG P L A Q
Sbjct: 101 IHCRWAMLGALGCVFPELFARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 157
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF EL
Sbjct: 158 ILAIWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAFAEL 210
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + + + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTAAKPKVSASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 153
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 154 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 204
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 205 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 253
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 140/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 43 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 103 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 159
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG L D YPGGA FDPL L+ DP ELKVKE+K
Sbjct: 160 CQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTAAELKVKELK 212
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 250
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 145/232 (62%), Gaps = 10/232 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTASKSKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG D YPGG+ FDPL L++DP
Sbjct: 156 A--QSILAIWATQVILMGAVEGYRVAG----GPLGEIT--DPLYPGGS-FDPLGLAEDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 207 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWS 258
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + + + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKVSASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 153 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 203
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 204 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 136/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 47 NELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 107 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G+ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 165 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 139/226 (61%), Gaps = 8/226 (3%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A R + LWYG +R ++LGP PSYLTGE GDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRAL 97
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EL+VKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 210 ELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 141/224 (62%), Gaps = 10/224 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF EL
Sbjct: 159 ILAIWACQVVLMGAIEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAEL 211
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP+ NL+DH++DP++NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 139/221 (62%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 47 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP +F ELKVK
Sbjct: 164 SQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPESFAELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP NN
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANN 254
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 153 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 203
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 204 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 252
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 25 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 84
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PEVL G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 85 LGALGCVFPEVLSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWAV 141
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIKN
Sbjct: 142 QVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIKN 194
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 195 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 231
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 12 SSKFKALARQARNESL-------WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
SSK + R + +S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 24 SSKVRGDGRISMRKSFAKPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 83
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 84 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLD 142
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG PGL A Q ++ I CQ +LM E R G PLG + D YPGG+ FD
Sbjct: 143 YLGNPGLVHA--QSILAIWACQVILMGAVEGYRIGG----GPLGEVI--DPLYPGGS-FD 193
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 194 PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 140/235 (59%), Gaps = 9/235 (3%)
Query: 8 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 67
A Q + + + R +YG +R +WLGP D PSYLTGE PGDYG+D AGLS DP
Sbjct: 14 AGQVGASARGQKQVTRAAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADP 73
Query: 68 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 127
F Y E++HARWAMLGALG + PE+L E VW++ G LDYLG
Sbjct: 74 ETFASYRELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLG 133
Query: 128 IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLN 187
L A Q ++ I CQ +LM G E R G PLG L D +PGGA FDPL
Sbjct: 134 NSSLVHA--QSILAILGCQVVLMGGAEAFRVNG----GPLGEDL--DKLHPGGA-FDPLG 184
Query: 188 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGPV+N +HI+DP +N
Sbjct: 185 LADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENWAEHIADPSGSN 239
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF EL
Sbjct: 159 ILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAEL 211
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KVK IKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 212 KVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 153 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 203
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 204 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G EPLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVILMGAVEGYRVAGN---EPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 218
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 136/218 (62%), Gaps = 8/218 (3%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 3 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 120
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G+ + G+ YPGG FDPL L+ DP F ELKVKEIK
Sbjct: 121 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPTTFAELKVKEIK 174
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 175 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 212
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
+RN WYG +RP+WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 6 SRNAIEWYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 65
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 66 ARWAMLGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 123
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G E L PGD FDPL L+ DP F ELKV
Sbjct: 124 AILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGD-------KFDPLGLADDPDTFAELKV 176
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
KEIKNGRLAM + GFY+QA TGKGP++N DH++DP +
Sbjct: 177 KEIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFN 216
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 134/222 (60%), Gaps = 10/222 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
ARN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 21 ARNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 138
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G E L + PG+ FDPL L+ DP F ELKV
Sbjct: 139 AILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGE-------KFDPLGLADDPDTFAELKV 191
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KEIKNGRLAM + GFY+QA TGKGP++N +H++DP N
Sbjct: 192 KEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKPVPSGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 140/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
N RLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 214 NSRLAMFSMFGFFVQAIVTGKGPIENLADHVADPVNNN 251
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 139/218 (63%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 VQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA GKGP++NL DH++DP+ NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVRGKGPIENLFDHVTDPVANN 251
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 141/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ RQ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 RKTGRQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRE 94
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 152
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWACQVVLMGAVEGYRIAG----GPLGKVT--DPLYPGGS-FDPLGLADDPEAF 204
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGR AM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 205 AELKVKEIKNGRSAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 144/231 (62%), Gaps = 10/231 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 8 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 67
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 68 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 125 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 177
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 178 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNF 228
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 140/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 29 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 88
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 89 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 147
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 148 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 198
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 199 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 247
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 144/232 (62%), Gaps = 10/232 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
RQ+ WYG +R +++GP PSYLTGE PGDYG+D AGLS +P F K E++
Sbjct: 44 RQSITGGPWYGPDRVKYMGPFSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVI 103
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
HARWAMLG +G +VPE+L+ G + E VW++ G + E L+YLG P L +Q +
Sbjct: 104 HARWAMLGTVGCIVPELLERNGV-KIGEAVWFKAGSQIFRDEGLNYLGDP--KLIHAQNI 160
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ + Q +LM E R G PLG P D YPGG FDPL+L+ DP F LK
Sbjct: 161 LAVLAAQVILMGAIEGYRISG----GPLG--EPTDPLYPGGN-FDPLHLADDPEEFAILK 213
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMD 251
VKEIKNGRLAM A LGFY+QA TGKGP++NL DH++DP NN + + D
Sbjct: 214 VKEIKNGRLAMFAMLGFYVQAIVTGKGPLENLYDHLADPFKNNAWAFATAFD 265
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPE 94
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 152
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 144/230 (62%), Gaps = 10/230 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K A+ + +S WYG +RP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 29 KPAAKSSTPDSFWYGPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 88
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG P L
Sbjct: 89 LELIHARWAMLGALGCIFPELLGSYGV-PFGESVWFKAGAQIFQEGGLDYLGNP--SLVH 145
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q ++ I Q +LM E R G PLG L D YPGG+ FDPL L+ DP F
Sbjct: 146 AQSILAILGTQVILMGAIEGYRVNG----GPLGEGL--DKLYPGGS-FDPLGLADDPDTF 198
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
ELKVKEIKNGRLAM + GF++QA TGKGP+QNL DH+++P NN +
Sbjct: 199 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNNAFA 248
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 140/218 (64%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + ++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRIGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 146/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG++ PE+L G E VW++ G LDYLG P L
Sbjct: 62 RELEVIHSRWAMLGALGSVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 121 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 171
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN S +
Sbjct: 172 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 228
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTG+ PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKQVSSSSPWYGADRVLYLGPLSREPPSYLTGDFPGDYGWDTAGLSADPETFSKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG FDPL L++ P
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGR-FDPLGLAERPQ 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF+ LKVKEIKNGRLAM + GF +QA TGKGP++NL DHI+DP++NN
Sbjct: 206 AFDALKVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIADPVNNN 254
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 15 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 75 MLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 131
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 132 FQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 181
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP NN
Sbjct: 182 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 222
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K+ +R + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 33 KSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 92
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 93 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 150
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q LLM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 151 -QSILAIWATQVLLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 202
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 203 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 249
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 144/230 (62%), Gaps = 10/230 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + +S WYG ERP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 22 KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 81
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG +L
Sbjct: 82 LELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAGAQIFQEGGLDYLG--NSNLVH 138
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q ++ I Q LLM E R G PLG L D YPGG+ FDPL L+ DP F
Sbjct: 139 AQSILAILGTQVLLMGAIEGYRVNG----GPLGEGL--DKLYPGGS-FDPLGLADDPDTF 191
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
ELKVKEIKNGRLAM + GF++QA TGKGP+QNL DH+++P NN +
Sbjct: 192 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFA 241
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 38 KAAGKVADSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 97
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 98 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 155
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 156 -QSILAIWATQVVLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 207
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 141/222 (63%), Gaps = 10/222 (4%)
Query: 21 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 158 AIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 139/218 (63%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YP GA FDPL L+ DP F ELKVKE+K
Sbjct: 161 VQVVLMGFVEGYRVGG----GPLGEGL--DKVYPSGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 141/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 43 ASSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 102
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 160 IWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 136/217 (62%), Gaps = 8/217 (3%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
LWYG +R ++LGP PSYLTGE PG+YG+D AGLS DP AF K E++H RWAM
Sbjct: 1 DLWYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAM 60
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGA G + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 61 LGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGF 118
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELKVKEIKN
Sbjct: 119 QVILMGLVEGLRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 172
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 173 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 209
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 34 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 93
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 94 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSLIFSEGGLDYLGNPSLIHA- 151
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 152 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 203
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH+SDP+++N
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNSN 250
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 141/222 (63%), Gaps = 10/222 (4%)
Query: 21 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 158 AIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E W++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAGWFKAGSQIFSDGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++ P
Sbjct: 155 A--QSLLAIWACQVVLMGAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLAERPQ 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP+++L DHI+DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 40 KPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 100 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 156
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 157 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 209
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGPV+NL DH++DP++NN
Sbjct: 210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 252
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 141/222 (63%), Gaps = 10/222 (4%)
Query: 21 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 158 AIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 140/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 45 AASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 104
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 105 RWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 161
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 162 IWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVK 214
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 39 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 98
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 99 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 157
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 158 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 208
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN S +
Sbjct: 209 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 265
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 153
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 154 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 204
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 205 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 9 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 68
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 69 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 125
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 126 LAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 178
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKE+KNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 179 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 221
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K+ +R + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 252
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 30 KTAAKPKPAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 89
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 90 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 148
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 149 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 199
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 200 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDV 60
L+ A K +A+ A + WYG R +WLGP + P+YLTGE PGDYG+D
Sbjct: 12 LQVSAKATGKKGTSKTVAKPAPSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDT 71
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 72 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGV-QFGEAVWFKAGAQIFQE 130
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
LDYLG P L A Q ++ CQ +LM E R G A E L PG+
Sbjct: 131 GGLDYLGNPSLVHA--QNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGES----- 183
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+++P
Sbjct: 184 --FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAV 241
Query: 241 NNLLSMV 247
NN +
Sbjct: 242 NNAFAFA 248
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELK
Sbjct: 160 LAIWACQVVLMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPEAFAELK 212
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D A LS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF EL
Sbjct: 159 ILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAEL 211
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 3 KTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 62
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 63 RELELIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 121
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 122 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 172
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 173 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 140/225 (62%), Gaps = 9/225 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S +YG +R WLGP+ P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAM
Sbjct: 50 SAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAM 109
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G +VEPVW++ G LDYLG PGL A Q ++
Sbjct: 110 LGALGCITPELLAKNGT-PIVEPVWFKAGAQIFAEGGLDYLGNPGLVHA--QSILATLAV 166
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G A E L D +PGG FDPL L++DP AF ELKVKEIKN
Sbjct: 167 QVILMGAIEGYRVNGGPAGEGL------DKLHPGGQFFDPLGLAEDPDAFAELKVKEIKN 220
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
GRLAM + GF++QA TGKGP+ NL +H++ P +N + +
Sbjct: 221 GRLAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFTYAQKF 265
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 142/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWATQVVLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 141/224 (62%), Gaps = 10/224 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEV 100
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RW MLGALG + PE+ G E VW++ G + LDYLG P L A Q
Sbjct: 101 IHCRWTMLGALGCVFPELFARNGV-KFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QS 157
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF EL
Sbjct: 158 ILAIWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAFAEL 210
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
+VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 211 EVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 62 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 121 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 171
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN S +
Sbjct: 172 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 228
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWACQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 141/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWASQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 144/231 (62%), Gaps = 10/231 (4%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
+S K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F
Sbjct: 31 ASMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 90
Query: 72 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
+ E++H+RWAMLGALG + PE L G E VW++ G LDYLG P L
Sbjct: 91 RNRELEVIHSRWAMLGALGIVFPEPLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSL 149
Query: 132 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
A Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ D
Sbjct: 150 IHA--QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPTYPGGS-FDPLGLADD 200
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
P AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 201 PEAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 36 KTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG++ PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGSVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWASQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 36 KAASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKELKNGRLAMFSIFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 5 KPVSSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 64
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 65 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 121
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP AF ELK
Sbjct: 122 LAIWACQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELK 174
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 175 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 140/222 (63%), Gaps = 10/222 (4%)
Query: 29 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
YG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 63
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
LG + PE+L G E VW++ G LDYLG P +L +Q ++ I CQ +
Sbjct: 64 LGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWACQVV 120
Query: 149 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
LM E R G PLG L DI YPGGA FDPL L+ DP ELKVKE+KNGRL
Sbjct: 121 LMGFIEGYRVGG----GPLGEGL--DIIYPGGA-FDPLGLADDPDTAAELKVKELKNGRL 173
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AM + GF++QA TGKGPV+NL DHI+DP++NN + +
Sbjct: 174 AMFSMFGFFVQAIVTGKGPVENLFDHIADPVNNNAWAFATNF 215
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 137/226 (60%), Gaps = 8/226 (3%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
Q ++ + Q +LM E R G+ + G+ YPGG FDPL L+ DPV F
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFA 209
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + F++QA TGKG ++NLLDHI +P+ NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFRFFVQAIVTGKGSLENLLDHIDNPVANN 255
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 6 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+ ++ SS K ++ A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTTKKVSASA-SPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 96
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 97 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 155
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 156 LGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 206
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 207 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 263
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 138/232 (59%), Gaps = 10/232 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + +S WYG ERP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 28 KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 87
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 88 LELIHARWAMLGALGCITPELLAKSGT-QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 145
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ Q +LM E R G A E L PG+ FDPL L+ DP F
Sbjct: 146 -QNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTF 197
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
ELKVKEIKNGRLAM + GF++QA TGKGP+QNL DH+S+P NN +
Sbjct: 198 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFA 249
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K+ + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KSATKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWASQVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLTDPVNNN 253
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D A +S DP F K E++H RWA
Sbjct: 7 ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWA 66
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 67 MLGALGCVFPELLVKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 123
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
CQ +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 124 CQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 173
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 174 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 214
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 155 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 142/221 (64%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 APSGSQWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILA 159
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I Q +LM E R G PLG + D YPGG+ FDPL L++DP AF ELKVK
Sbjct: 160 IWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPLKNLADHIADPVNNN 253
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVTSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 142/222 (63%), Gaps = 10/222 (4%)
Query: 21 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
+A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 42 KATSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 101
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 102 SRWAMLGALGCVFPELLARNGV-QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 158
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 159 AIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKV 211
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KE+KNGRLAM + GF++QA TG GP++NL DH++DP++NN
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGNGPIENLADHLADPVNNN 253
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 138/219 (63%), Gaps = 10/219 (4%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E++HARW
Sbjct: 45 SDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 104
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 105 AMLGALGCVTPELLAKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 161
Query: 144 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
Q +LM E R G PLG D YPGG+ FDPL L+ DP F ELKVKEI
Sbjct: 162 ASQVILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTFAELKVKEI 214
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 253
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 145/231 (62%), Gaps = 10/231 (4%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
S + A + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F
Sbjct: 36 SMRKAATKKVAPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 95
Query: 72 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 KNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSL 154
Query: 132 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ D
Sbjct: 155 IHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPIYPGGS-FDPLGLADD 205
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
P AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH+ DP++NN
Sbjct: 206 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLFDPVNNN 256
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 40 KSVAKSKAVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 99
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 100 RELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 156
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
+Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP
Sbjct: 157 VHAQSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPE 209
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 210 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 258
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 142/223 (63%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 42 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 102 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 158
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 159 LAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 211
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 212 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 139/218 (63%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDY +D AGLS DP F + E++H+RWA
Sbjct: 34 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWA 93
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 94 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 150
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 151 VQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 203
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 204 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 241
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 141/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVK
Sbjct: 173 IWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 46 SPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 105
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAC 162
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 163 QVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 215
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 147/237 (62%), Gaps = 12/237 (5%)
Query: 6 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 95
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 155 LGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 205
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 133/221 (60%), Gaps = 10/221 (4%)
Query: 23 RNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
RN WYG +R +WLGP D PSYLTG+ PGDYG+D AGLS DP F+ Y E++HA
Sbjct: 22 RNAVEWYGPDRAKWLGPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHA 81
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 82 RWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSILA 139
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G E L + PG+ FDPL L+ DP F ELKVK
Sbjct: 140 ILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGE-------KFDPLGLADDPDTFAELKVK 192
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GFY+QA TGKGP++N +H++DP N
Sbjct: 193 EIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 48 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 217
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 139/218 (63%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 161 SQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NG LAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 214 NGSLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A +S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 56 ASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVK
Sbjct: 173 IWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 141/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I Q +LM E R G PLG + D YPGGA FDPL L+ DP AF ELKVK
Sbjct: 160 IWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEKPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWA+L LG + PE+L G E VW++VG LDYLG P L
Sbjct: 97 RELEVIHCRWAILERLGCVFPELLSRNGV-KFGEAVWFKVGSQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 156 A--QSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 218
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 165 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 218
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 52 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 111
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 112 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 168
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 169 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 222 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 52 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 111
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 112 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 168
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 169 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 222 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLTDHLADPVNNN 262
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 52 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHC 111
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 112 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 168
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L++DP AF ELKVK
Sbjct: 169 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLAEDPEAFAELKVK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 222 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 52 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 111
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 112 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 168
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 169 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 222 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 145/241 (60%), Gaps = 10/241 (4%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A + + A + + + S+WYG +RP +LGP PSYLTGE PGDYG+D A
Sbjct: 24 LSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGSQIFAEG 142
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
LDYLG P L A Q ++ I Q +LM E R G PLG D YPGG+
Sbjct: 143 GLDYLGNPSLVHA--QSILAIWAFQVVLMGAVEGYRVAG----GPLGEVE--DPLYPGGS 194
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP N
Sbjct: 195 -FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPTVN 253
Query: 242 N 242
N
Sbjct: 254 N 254
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A +S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 11 ASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 70
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++
Sbjct: 71 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILA 127
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVK
Sbjct: 128 IWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVK 180
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 181 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVNNN 221
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 141/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGWLDYLGSP--NLVHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL L+ DP AF ELKVK
Sbjct: 173 IWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 153
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
+Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 154 VHAQSILAIWASQVILMGAVEGYRIGG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 206
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 140/227 (61%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K R + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KRTTRPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAM GALG + PE+L G E VW++ G Q LDYLG P L A
Sbjct: 96 LEVIHCRWAMPGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFQEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ P AF
Sbjct: 154 -QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADVPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 32 KTAAKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 91
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 92 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 150
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 151 A--QSILAIWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 201
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 202 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 250
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 31 KSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 90
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 91 RELEVIHSRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 149
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 150 A--QSILAIWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 200
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 201 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 144/232 (62%), Gaps = 7/232 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
A+ ++++S+WYG +RP++LGP P+YLTGE PGDYG+D +GLS DP F+++ E
Sbjct: 27 AKPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVE 86
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
++HARWAMLGALG + PEVL+ E VW++ G L+YLG PGL A Q
Sbjct: 87 VIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHA--Q 144
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
++ + Q LLM E R G P G D YPGGA FDPL L+ DP E
Sbjct: 145 SIVATLVVQVLLMGAVEIYRANG---EGPSGFGEGQDNLYPGGA-FDPLGLADDPDTLAE 200
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
LKVKE+KNGRLAM++ LGF++QA TGKGP+ NLL H+ +P N + S
Sbjct: 201 LKVKELKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEPGEFNFYANYAS 252
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K++ + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KSVGKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWAVQVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 152
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 153 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 204
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++ P++NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSI 159
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I Q LLM E R G PLG + D YPGG+ FDPL L+ DP AF ELK
Sbjct: 160 LAIWATQVLLMGAVEGYRIAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAFAELK 212
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 143/250 (57%), Gaps = 18/250 (7%)
Query: 7 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 55
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 56 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 115
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 116 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 175
L+YLG L A Q +I Q +LM E R G G D
Sbjct: 122 QIFAAGGLNYLGNESLIHA--QSIIATLAVQVVLMGLAEAYRANGGSE----GFLDDLDT 175
Query: 176 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
YPGG FDPL L+ DP F ELKVKEIKNGRLAM + LGF++QA TGKGPVQNL DH+
Sbjct: 176 LYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHL 234
Query: 236 SDPLHNNLLS 245
+DP NN +
Sbjct: 235 ADPTVNNAFA 244
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAT 162
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 163 QVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 215
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 140/220 (63%), Gaps = 16/220 (7%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 107 LGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAV 163
Query: 146 QALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
Q +LM E R G E ++PL YPGG+ FDPL L++DP AF ELKVKE
Sbjct: 164 QVILMGAVEGYRIAGGPPGEVVDPL---------YPGGS-FDPLGLAEDPEAFAELKVKE 213
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 253
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 140/223 (62%), Gaps = 15/223 (6%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG RP++LGP PSYLTGE PGDYG+D AGLS DP F +Y E++HARWAML
Sbjct: 38 WYGPSRPKFLGPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAML 97
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG +VPE+LD G H+ W+ G + + L YLGIPGL A S ++ I Q
Sbjct: 98 GALGCVVPELLD--GTNHI---AWFNAGATIFSDDGLQYLGIPGLINAKS--IVATLIVQ 150
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G P G L D YPGG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 151 VILMSYVEGYRVNG----GPAGTGL--DAVYPGGS-FDPLGLADDPDTFSELKVKEIKNG 203
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
RLAM++ GF+IQA TG+GP++NL H++D NN S+ S
Sbjct: 204 RLAMLSMFGFFIQAIVTGEGPIENLNKHLADASANNFYSLYAS 246
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 142/247 (57%), Gaps = 11/247 (4%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDV 60
+ K + + K A + A + +YG R +WLGP + P+YLTGE PGDYG+D
Sbjct: 14 VSAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDT 73
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGLS DP F++Y E++HARWAMLGALG L PE+L G E VW++ G
Sbjct: 74 AGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGT-QFGEAVWFKAGAQIFSE 132
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
LDYLG P L A Q ++ CQ +LM E R G A E L PG+
Sbjct: 133 GGLDYLGNPSLVHA--QNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGES----- 185
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGPVQNL DH+S+P
Sbjct: 186 --FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNPTV 243
Query: 241 NNLLSMV 247
NN +
Sbjct: 244 NNAFAFA 250
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ + S WYG +R ++L P + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 39 AKPTPSGSPWYGPDRVKYLSPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 98
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 99 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QS 155
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF EL
Sbjct: 156 ILAIWACQVILMGAVEGYRVAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAEL 208
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 209 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 145/243 (59%), Gaps = 7/243 (2%)
Query: 8 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 67
A+ +S K+ A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP
Sbjct: 371 AMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDP 430
Query: 68 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 127
+Y E++HARWAMLGALG + PE+L G VW++ G + L+YLG
Sbjct: 431 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 490
Query: 128 IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLN 187
P L A Q V++ + +M E RY G + G L D YPGG FDPL
Sbjct: 491 NPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLG 543
Query: 188 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T GPV+NL H++DP NN+ S
Sbjct: 544 LANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFT 603
Query: 248 KSM 250
Sbjct: 604 SGF 606
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
A A S WYG RP+WLGP+ P YL GE GDYGFD AGL+ DP FQ+Y
Sbjct: 143 SGFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYR 202
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
+ E+ + RWAMLG LG L PEVL V EPVW++ G + L G ++DYL P L A
Sbjct: 203 DAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHA 262
Query: 135 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
+ ++ + + + E R G PLG D +YPGG +FDPL LSKDP A
Sbjct: 263 SNL--LLTLVLELVFFFAAETWREAGE---GPLGKAQ--DKSYPGG-VFDPLGLSKDPAA 314
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
F E KVKE+KNGRLAM+A LG ++QA TG+ P++NL H+++P N S ++
Sbjct: 315 FAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVNFWTSYAPTL 370
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 109 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 168
VW++ G + L+YLG P L A Q V++ + +M E RY G + G
Sbjct: 11 VWYKAGAQIFSADGLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG--GVGDFG 66
Query: 169 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 228
L D YPGG FDPL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T GPV
Sbjct: 67 REL--DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 123
Query: 229 QNLLDHISDPLHNNLLSMVKSM 250
+NL H++DP NN+ S
Sbjct: 124 ENLTFHLADPSANNIFSFTSGF 145
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R ++LGP + PSYLTGE GDYG+D AGLS DP F K
Sbjct: 5 KTAAKPKPAASGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKN 64
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 65 RELEVIHARWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 123
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 124 A--QSILAIWATQVILMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 174
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 175 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 231
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 143/230 (62%), Gaps = 13/230 (5%)
Query: 16 KALARQ---ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQK 72
KA R+ A +S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 47 KATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 106
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLH 132
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P
Sbjct: 107 NRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--Q 163
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG D YPGG FDPL L+ DP
Sbjct: 164 LIHAQSILAIWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGLADDP 216
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ++KVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 217 DAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAT 162
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 163 QVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 215
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 148/234 (63%), Gaps = 12/234 (5%)
Query: 9 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 68
+++++ K++A A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP
Sbjct: 45 MREATGKKSVA--ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 102
Query: 69 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 128
F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 103 TFAKNRELEVIHGRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGS 161
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL 188
P +L +Q ++ I CQ +LM E R G PLG D YPGG FDPL
Sbjct: 162 P--NLVHAQSILAILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGW 212
Query: 189 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 ADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 146/237 (61%), Gaps = 12/237 (5%)
Query: 6 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 95
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 155 LGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 205
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 262
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 140/225 (62%), Gaps = 10/225 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 5 SPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 64
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 65 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWAT 121
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q LLM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 122 QVLLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 174
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
GRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 175 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 219
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 139/225 (61%), Gaps = 10/225 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 48 SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 217
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
GRLAM + GF++QA TGKGP++NL DH++DP+ NN S +
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYATNF 262
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 30 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 89
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 90 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 146
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 147 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 200
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 201 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 237
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 147/237 (62%), Gaps = 12/237 (5%)
Query: 6 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+ ++ SS K A + + S WYG +R +LGP + PS+LTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSHLTGEFPGDYGWDTAGLSA 95
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 155 LGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 205
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 143/250 (57%), Gaps = 18/250 (7%)
Query: 7 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 55
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 56 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 115
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 116 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 175
L+YLG L A Q +I Q +LM E R G G D
Sbjct: 122 QIFADGGLNYLGNESLIHA--QSIIATLAVQVVLMGLAEAYRANGGSE----GFLDDLDT 175
Query: 176 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
YPGG FDPL L+ DP F ELKVKEIKNGRLAM + LGF++QA TGKGPVQNL DH+
Sbjct: 176 LYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHL 234
Query: 236 SDPLHNNLLS 245
+DP NN +
Sbjct: 235 ADPTVNNAFA 244
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 45 SPWYGPDRVKYLGPFSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 104
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G + LDYLG P L A Q ++ I
Sbjct: 105 LGALGCVFPELLSKNG-IKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWAS 161
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L++DP AF ELKVKE+KN
Sbjct: 162 QVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLAEDPEAFAELKVKELKN 214
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANN 251
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 45 ASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 104
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 105 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 161
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 162 IWATQVVLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVK 214
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 9/227 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-EFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L + A L S + A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D A
Sbjct: 108 LTSGFAMLATSGRKAKAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTA 167
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GL DP +Y E++HARWAMLGALG + PE+L G VW++ G +
Sbjct: 168 GLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSAD 227
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
L+YLG P L A Q V++ + +M E RY G + G L D YPGG
Sbjct: 228 GLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP 281
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T GPV+NL H++DP N
Sbjct: 282 -FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSAN 340
Query: 242 NLLSMVKSM 250
N+ S
Sbjct: 341 NIFSFTSGF 349
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 145/246 (58%), Gaps = 13/246 (5%)
Query: 8 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 67
A+ +S K+ A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP
Sbjct: 575 AMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDP 634
Query: 68 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 127
+Y E++HARWAMLGALG + PE+L G VW++ G + L+YLG
Sbjct: 635 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 694
Query: 128 IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG---DINYPGGALFD 184
P L A Q V++ + +M E RY G G+ G D YPGG FD
Sbjct: 695 NPSLIHA--QSVVLTFLSTLAIMGAVEAYRYGG-------GVGDSGRELDTLYPGGP-FD 744
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
PL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T GPV+NL H++DP NN+
Sbjct: 745 PLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIF 804
Query: 245 SMVKSM 250
S
Sbjct: 805 SFTSGF 810
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 133/219 (60%), Gaps = 7/219 (3%)
Query: 29 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
YG +R +WLG P YLTGELPGDYG+D AGL DP +Y +++H RWAMLG
Sbjct: 838 YGPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGV 897
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
LG PE ++ G EPVW++ G + L+YLG PGL A Q V++ + +
Sbjct: 898 LGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHA--QSVVLTFLSTLV 955
Query: 149 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
LM E R G ++ G L D YPGG FDPL L+ DP AF ELKVKE+KNGRL
Sbjct: 956 LMGAVEAYRSAG--SVGDFGADL--DPLYPGGP-FDPLGLADDPEAFLELKVKEVKNGRL 1010
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
AMVA GF++Q TGKGPV+N +DH++DP NN+ +
Sbjct: 1011 AMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQLT 1049
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
A A S WYG RP+WLGP+ P YL GE GDYGFD AGL+ DP FQ+Y
Sbjct: 347 SGFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYR 406
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
+ E+ + RWAMLG LG L PEVL V EPVW++ G + L G ++DYL P L A
Sbjct: 407 DAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHA 466
Query: 135 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
+ ++ + + + E R G PLG D +YPGG +FDPL LSKDP A
Sbjct: 467 SNL--LLTLVLELVFFFAAETWREAG---EGPLGKAQ--DKSYPGG-VFDPLGLSKDPAA 518
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
F E KVKE+KNGRLAM+A LG ++QA TG+ P++NL H+++P N S ++
Sbjct: 519 FAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVNFWTSYAPTL 574
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q V++ + +LM E R G ++ G L D YPGG FDPL L+ DP AF
Sbjct: 3 AQSVVLTFLSTLVLMGAVEAYRSAG--SVGDFGADL--DPLYPGGP-FDPLGLADDPEAF 57
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
ELKVKE+KNGRLAMVA GF +Q TGKGPV+N +DH++DP NNL +
Sbjct: 58 LELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQLTSGF 112
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 84 SPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 143
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 144 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 200
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 201 QVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 253
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 254 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 290
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 9 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 68
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 69 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 127
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 128 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 178
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 179 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 235
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 9 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 68
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 69 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 127
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 128 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 178
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 179 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 235
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 9 KAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 68
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 69 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 127
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 128 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 178
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 179 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 235
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 141/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 RKTTKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVVLMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 7 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 66
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 67 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 125
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 126 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 176
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 177 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 233
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 9/227 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 134/221 (60%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGP++NL DH+++P NN +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFA 247
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 134/221 (60%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGP++NL DH+++P NN +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFA 247
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 145/237 (61%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 7 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 66
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 67 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 125
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 126 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 176
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 177 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 233
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 54 SPWYGPDRVKYLGPFSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 113
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G + LDYLG P L A Q ++ I
Sbjct: 114 LGALGCVFPELLSKNG-IKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWAS 170
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L++DP AF ELKVKE+KN
Sbjct: 171 QVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLAEDPEAFAELKVKELKN 223
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 224 GRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANN 260
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 140/227 (61%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 RKTGKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWASQVVLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 21 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
+A + S WYG +R +LGP+ + PSYLTGE GDYG+D AGLS DP F K E++H
Sbjct: 42 KAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIH 101
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 102 SRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 158
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKV
Sbjct: 159 AIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKV 211
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
KE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + V
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYV 258
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 136/218 (62%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G E L DI YPGGA FDPL L+ DP ELKVKE+K
Sbjct: 161 VQVVLMGFIEGYRVGGGPLDEGL------DIIYPGGA-FDPLGLADDPDTAAELKVKELK 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGPV+NL D + DP +NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPVENLFDQLRDPGNNN 251
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 141/225 (62%), Gaps = 9/225 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 14 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 73
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 74 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 130
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 131 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 184
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
GRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 185 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNF 229
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWGC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 164 QVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 45 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 104
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 105 LGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAT 161
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 162 QVVLMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 214
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + LGF++QA TGKGP++NL DH++DP++NN
Sbjct: 215 GRLAMFSMLGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 134/221 (60%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGP++NL DH+++P NN +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFA 247
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 137/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAM 105
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G L YLG P L A Q ++ I C
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKKGSQIFSEGGLQYLGNPSLVHA--QSILAIWAC 162
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ D AF ELKVKEIKN
Sbjct: 163 QVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDAEAFAELKVKEIKN 215
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLIHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG FDPL + DP AF ELKVK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN-FDPLGWADDPDAFAELKVK 225
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 226 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F + E++H RWAM
Sbjct: 46 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM 105
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 162
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 163 QVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 215
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP + PSYL GE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 160 IWASQVVLMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDPLGLADDPEAFSELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 164 QVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE GDYG+D AGLS DP F K E++HARWAM
Sbjct: 48 SPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 217
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 142/227 (62%), Gaps = 9/227 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVNNN 254
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 46 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 105
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 162
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 163 QVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 141/227 (62%), Gaps = 9/227 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF
Sbjct: 155 -QSILAIWATQVILMGAVEGYRVAG---EGPLG--EAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H RWAM
Sbjct: 47 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 164 QVILMGAVEGYRVAG---EGPLG--EAEDLLYPGGS-FDPLGLAADPEAFAELKVKEIKN 217
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 146/240 (60%), Gaps = 13/240 (5%)
Query: 4 TKKAALQDSSKFKALARQAR-NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
++K AL+D +++ QA+ + LWYG +R ++LGP PSYL GE PGDYG+D AG
Sbjct: 24 SRKNALRD----RSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAG 79
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
LS DP AF + E++H RWAMLGALG + PEVL E VW++ G
Sbjct: 80 LSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGG 139
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLG P +L +Q ++ I CQ +LM E R G+ + GD+ YPGG
Sbjct: 140 LDYLGNP--NLVHAQSILAIWACQVILMGLVEGYRINGLPDVGE-----GGDL-YPGGQY 191
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL + DP ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+ +P+ NN
Sbjct: 192 FDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 108
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 109 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWAT 165
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 166 QVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKN 218
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 139/232 (59%), Gaps = 7/232 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 88 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 147
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAMLGALG + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 148 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 205
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
V++ + +M E RY G + G L D YPGG FDPL L+ DP A EL
Sbjct: 206 VVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLGLANDPDALAEL 260
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
KVKE+KNGRLAMVA LGFY+Q T GPV+NL H++DP NN+ S
Sbjct: 261 KVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 312
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 135/232 (58%), Gaps = 12/232 (5%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 323 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 382
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAML + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 383 IHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 435
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
V++ + +M E RY G + G L D YPGG FDPL L+ DP A EL
Sbjct: 436 VVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLGLANDPDALAEL 490
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
KVKE+KNGRLAMVA LGFY+Q T GPV+NL H++DP NN+ S
Sbjct: 491 KVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 542
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233
D YPGG FDPL L+ DP A ELKVKE+KNGRLAMVA LGFY+Q T GPV+NL
Sbjct: 2 DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTF 60
Query: 234 HISDPLHNNLLSMVKSM 250
H++DP NN+ S
Sbjct: 61 HLADPSSNNIFSFTSGF 77
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 43 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 102
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 103 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 159
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 160 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 213
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 214 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 250
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE GDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 43 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 102
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 103 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 159
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 160 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 213
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 214 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 250
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 135/216 (62%), Gaps = 10/216 (4%)
Query: 27 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E++HARWAML
Sbjct: 50 IWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAML 109
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L G E VW++ G LDYLG P L A Q ++ I Q
Sbjct: 110 GALGCVTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWASQ 166
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G PLG D YPGG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 167 VILMGAVEGYRVAG----GPLGDVT--DPIYPGGS-FDPLGLADDPDTFAELKVKEIKNG 219
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
RLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFGELKVKELKK 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM++ GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 217 GRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHS 102
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I Q +LM E R G PLG + D YPGGA FDPL L+ DP AF ELKVK
Sbjct: 160 IWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIK GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 EIKKGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 141/225 (62%), Gaps = 9/225 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 26 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 85
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 86 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 142
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKE+KN
Sbjct: 143 QVILMGAVEGYRVAGN---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKN 196
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
GRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 197 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 241
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 139/232 (59%), Gaps = 7/232 (3%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 36 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 95
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAMLGALG + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 96 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 153
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
V++ + +M E RY G + G L D YPGG FDPL L+ DP A EL
Sbjct: 154 VVLTFLSTLAIMGAVEAYRYGG--GVGDFGREL--DTLYPGGP-FDPLGLANDPDALAEL 208
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
KVKE+KNGRLAMVA LGFY+Q T GPV+NL H++DP NN+ S
Sbjct: 209 KVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 260
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 64/96 (66%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 271 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 330
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
+HARWAMLGALG + PE+L G VW++ G
Sbjct: 331 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAG 366
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 140/227 (61%), Gaps = 11/227 (4%)
Query: 19 ARQARNESL-WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
+RQ S+ +YG +R +WLGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 21 SRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREI 80
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVE-PVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG L PE+L GA E VW++ G S + L+YLG P L A
Sbjct: 81 EVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHA- 139
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ + + Q ++M E RY G +E GD YPGGA FDPL L+ DP
Sbjct: 140 -QSIVAVLLTQLVIMGAAEAYRYAGEGPVE-----TSGDSLYPGGA-FDPLGLADDPDTL 192
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGK P++NL DH++DP N
Sbjct: 193 AELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTAN 239
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 141/221 (63%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 44 ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 104 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILA 160
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I Q +LM E R G PLG + D YPGG+ FDPL L++DP AF ELKVK
Sbjct: 161 IWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL D ++DP++NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADPVNNN 254
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 137/223 (61%), Gaps = 11/223 (4%)
Query: 26 SLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+ WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWA
Sbjct: 137 AAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWA 196
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE L G L EPVW++ G LDYLG +L +Q ++ I
Sbjct: 197 MLGALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILA 253
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 254 FQVVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELK 306
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
NGRLAM A GFY+QA TG+GPV+N H++DP + N L+ V
Sbjct: 307 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 349
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 137/223 (61%), Gaps = 11/223 (4%)
Query: 26 SLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+ WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWA
Sbjct: 377 AAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWA 436
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE L G L EPVW++ G LDYLG +L +Q ++ I
Sbjct: 437 MLGALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILA 493
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 494 FQVVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELK 546
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
NGRLAM A GFY+QA TG+GPV+N H++DP + N L+ V
Sbjct: 547 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 589
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 132 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
+L +Q ++ I Q +LM E R G PLG D YPGGA FDPL L+ D
Sbjct: 1 NLVHAQSILAILAFQVVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADD 53
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
P F ELKVKE+KNGRLAM A GFY+QA TG+GPV+N H++DP + N L+ V
Sbjct: 54 PETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 109
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D A +S DP F K E++H RWA
Sbjct: 47 ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDY G P +L +Q ++ I
Sbjct: 107 MLGALGCVFPELLAKNG-LKFGEAVWFKAGAQIFSEGGLDYAGNP--NLIHAQSILAIWA 163
Query: 145 CQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
CQ +LM E R G E L+PL PGGA FDPL L+ DP A ELKVK
Sbjct: 164 CQVVLMGLIEGYRVGGGTLGEGLDPL---------LPGGA-FDPLGLADDPEACAELKVK 213
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 144/242 (59%), Gaps = 11/242 (4%)
Query: 7 AALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLS 64
+A + S K+ +Q S+ WYG +RP++LGP PSYL GE PGDYG+D AGLS
Sbjct: 13 SARRTVSSPKSKGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLKGEYPGDYGWDTAGLS 72
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F +Y E++H+RWA+LG LG + PE+L+ G E VW++ G + L+
Sbjct: 73 ADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSADGLN 132
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q +I Q +L+ E R G A E D YPGGA FD
Sbjct: 133 YLGNPSLVHA--QSIIATVATQVILLGLAEGYRVNGGPAGEIT------DPLYPGGA-FD 183
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
PL L+ DP F ELKVKEIKNGRLA A LGF++QA TGKGP+QNL DH++DP N
Sbjct: 184 PLGLADDPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLADPFAVNGF 243
Query: 245 SM 246
++
Sbjct: 244 TI 245
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 138/223 (61%), Gaps = 11/223 (4%)
Query: 26 SLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+ WYG R +WLGP + PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWA
Sbjct: 360 AAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWA 419
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE L G L EPVW++ G LDYLG +L +Q ++ I
Sbjct: 420 MLGALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILA 476
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 477 FQVVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELK 529
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
NGRLAM A GFY+QA TG+GPV+N H++DP + N L+ V
Sbjct: 530 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 572
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 138/223 (61%), Gaps = 11/223 (4%)
Query: 26 SLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+ WYG R +WLGP + PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWA
Sbjct: 600 AAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWA 659
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE L G L EPVW++ G LDYLG +L +Q ++ I
Sbjct: 660 MLGALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILA 716
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 717 FQVVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELK 769
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
NGRLAM A GFY+QA TG+GPV+N H++DP + N L+ V
Sbjct: 770 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 812
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 137/223 (61%), Gaps = 11/223 (4%)
Query: 26 SLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+ WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWA
Sbjct: 120 AAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWA 179
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE L G L EPVW++ G LDYLG +L +Q ++ I
Sbjct: 180 MLGALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILA 236
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG D YPGGA FDPL L+ DP F ELKVKE+K
Sbjct: 237 FQVVLMGLAEAYRVNG----GPLG--EDSDALYPGGA-FDPLGLADDPETFAELKVKELK 289
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
NGRLAM A GFY+QA TG+GPV+N H++DP + N L+ V
Sbjct: 290 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 332
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233
D YPGGA FDPL L+ DP F ELKVKE+KNGRLAM A GFY+QA TG+GPV+N
Sbjct: 20 DALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAA 78
Query: 234 HISDPLHNNLLSMV 247
H++DP + N L+ V
Sbjct: 79 HVADPFNVNGLTAV 92
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 134/221 (60%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCVTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGP++NL DH+++P NN +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFA 247
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 141/227 (62%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSY TGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVTSGSPWYGPDRVKYLGPFSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 205
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+K+GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 206 AELKVKELKHGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 144/237 (60%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 9 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 68
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 69 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 127
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 128 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 178
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF E KVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 179 AFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 235
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 137/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F + E++H RWAM
Sbjct: 46 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM 105
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 162
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D YPGG+ FDPL + DP AF ELKVKEIKN
Sbjct: 163 QVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGFADDPEAFAELKVKEIKN 215
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 138/221 (62%), Gaps = 10/221 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 52 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 111
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 112 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 168
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 169 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRL M + GF++QA TGKGP+++L DH++DP++NN
Sbjct: 222 EIKNGRLTMFSMFGFFVQAIVTGKGPIEDLADHLADPVNNN 262
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 142/250 (56%), Gaps = 18/250 (7%)
Query: 7 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 55
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 56 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 115
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 116 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDI 175
L+YLG L A Q +I Q +LM E R G G D
Sbjct: 122 QIFADGGLNYLGNESLIHA--QSIIATLAVQVVLMGLAEAYRANGGSE----GFLDDLDT 175
Query: 176 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
YPGG FDPL L+ DP F ELKVKEIKNGRLAM + LGF++QA TGKGPVQNL DH+
Sbjct: 176 LYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHL 234
Query: 236 SDPLHNNLLS 245
+DP N +
Sbjct: 235 ADPTVNKAFA 244
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG FDPL L+ DP AF ++KVKE+KN
Sbjct: 164 QVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGT-FDPLGLADDPEAFADVKVKELKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F + +++H RWAM
Sbjct: 48 SPWYGSERVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 165 QVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKN 218
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF+ QA TGKGP++NL DH++DP++NN
Sbjct: 219 GRLAMFSMFGFFAQAIVTGKGPLENLADHLADPVNNN 255
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 144/237 (60%), Gaps = 10/237 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 24 KTAAPKKVAPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 83
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 84 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 142
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 143 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 193
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL D ++DP+ NN S +
Sbjct: 194 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVANNAWSYATNF 250
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 139/228 (60%), Gaps = 10/228 (4%)
Query: 28 WYGEERPRWLGPIPY--DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
WYG +RP+WL P + P YLTGE PGDYG+D GLS DP F Y E+LHARWAM
Sbjct: 125 WYGPDRPKWL-PDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAM 183
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L M L EPVW++ G L +++DYLG P L + +I IA
Sbjct: 184 LGALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSP--QLVHASSIIAIAAA 241
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q LLM G E R G+ P G D +PGG F+PL KD ELKVKEIKN
Sbjct: 242 QVLLMGGAEAYRASGV---APNGEEF--DKMHPGGYYFNPLKFGKDEADLAELKVKEIKN 296
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDP 253
GRLAM + LGFYIQAA TG GP+QNL+DH +D + N+ V + +P
Sbjct: 297 GRLAMFSMLGFYIQAATTGNGPLQNLVDHRADAANENIFKYVFTSPEP 344
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 149/242 (61%), Gaps = 15/242 (6%)
Query: 6 KAALQD---SSKFKALARQAR--NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+ +QD S++ + A + R S WYG +R ++LGP + PSYLTGE PGDYG+D
Sbjct: 34 RITMQDKTTSNRPRTTAGKLRPATSSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 93
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 94 AGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGV-KFGEAVWFKAGSQIFSE 152
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
LDYLG P +L +Q ++ I Q +LM E R G PLG D YPG
Sbjct: 153 GGLDYLGNP--NLIHAQSILAIWAVQVVLMGAVEGYRIAG----GPLGEIT--DPLYPGN 204
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++
Sbjct: 205 S-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 263
Query: 241 NN 242
NN
Sbjct: 264 NN 265
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 146/256 (57%), Gaps = 20/256 (7%)
Query: 2 LETKKAALQDSSKF-------KALARQARNES--LWYGEERPRWLGPIPYD-YPSYLTGE 51
L + ALQ S+K K A+QA S +YG R +WLGP + P+YLTGE
Sbjct: 5 LSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGE 64
Query: 52 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 111
PGDYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW+
Sbjct: 65 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGT-QFGEAVWF 123
Query: 112 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFL 171
+ G LDYLG P L A Q ++ Q +LM E R G A E L
Sbjct: 124 KAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLY 181
Query: 172 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
PG+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP+QNL
Sbjct: 182 PGES-------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNL 234
Query: 232 LDHISDPLHNNLLSMV 247
DH+S+P NN +
Sbjct: 235 DDHLSNPTVNNAFAFA 250
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 136/230 (59%), Gaps = 10/230 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A +S +YG +R +LGP D PSYLTGE PGDYG+D GLS DP F Y E++
Sbjct: 37 KSATPDSPFYGPDRVTFLGPFT-DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELM 95
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
HARWAMLG LG +PE L+ + E VW++ G Q LDYLG P L A Q +
Sbjct: 96 HARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHA--QSI 153
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
I QALLM E R G PLG GD YPGG+ FDPL L DP ELK
Sbjct: 154 IATVFIQALLMGLVEGYRVGG----GPLG--EAGDKMYPGGS-FDPLGLGDDPDTLAELK 206
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
VKEIKNGRLAM + G++IQA TGKGPV+NL H++DP NN + S
Sbjct: 207 VKEIKNGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNNGFAYATS 256
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 143/241 (59%), Gaps = 10/241 (4%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 62
T A Q + KA + R +YG +R ++LGP PSYL GE PGDYG+D AG
Sbjct: 12 TGITARQSTKSAKARKQVTRASVEFYGPDRAKFLGPFSEGAVPSYLKGEFPGDYGWDTAG 71
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP-VWWRVGYSKLQGE 121
LS DP F +Y E++H+RWA+LGALG L PE L GA E VW++ G S +
Sbjct: 72 LSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDD 131
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
L+YLG P L +Q ++ + Q +L+ E RY G ++ GD YPGG
Sbjct: 132 GLNYLGNP--QLIHAQSIVATLLAQIVLVGTAEAYRYAGEGPVD-----TSGDKLYPGG- 183
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L DP A ELKVKEIKNGRLA V+ GF++QA TGKGP++NL DH++DP +N
Sbjct: 184 FFDPLGLGDDPEALAELKVKEIKNGRLAQVSVFGFFVQALVTGKGPLENLDDHLADPWNN 243
Query: 242 N 242
N
Sbjct: 244 N 244
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 145/235 (61%), Gaps = 12/235 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K++A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSATKKSVA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 202 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 136/230 (59%), Gaps = 10/230 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A +S +YG +R +LGP D PSYLTGE PGDYG+D GLS DP F Y E++
Sbjct: 37 KSATPDSPFYGPDRVTFLGPFT-DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELM 95
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
HARWAMLG LG +PE L+ + E VW++ G Q LDYLG P L A Q +
Sbjct: 96 HARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHA--QSI 153
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
I QALLM E R G PLG GD YPGG+ FDPL L DP ELK
Sbjct: 154 IATVFIQALLMGLVEGYRVGG----GPLG--EAGDKMYPGGS-FDPLGLGDDPDTLAELK 206
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
VKEIKNGRLAM + G++IQA TGKGPV+NL H++DP NN + S
Sbjct: 207 VKEIKNGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNNGFAYATS 256
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 136/214 (63%), Gaps = 10/214 (4%)
Query: 29 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
YG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 63
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
LG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +
Sbjct: 64 LGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWAVQVV 120
Query: 149 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
LM E R G PLG L D YPGGA FDPL L+ DP F ELKVKE+KNGRL
Sbjct: 121 LMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRL 173
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 174 AMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 207
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 140/219 (63%), Gaps = 10/219 (4%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
++S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RW
Sbjct: 44 SDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 103
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 104 AMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILSIW 160
Query: 144 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
Q +LM E R G PLG + D YPGG+ FDPL L++DP ELKVKE+
Sbjct: 161 ATQVILMGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLAEDPERSAELKVKEL 213
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 148/253 (58%), Gaps = 20/253 (7%)
Query: 1 MLETKKAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGD 55
M K+A++ S + +R AR WYG +RP++LGP D PSYLTGE PGD
Sbjct: 1 MAAIAKSAVRSSVRPTVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDVPSYLTGEFPGD 60
Query: 56 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 115
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 120
Query: 116 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLP 172
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 121 QIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL----- 173
Query: 173 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 174 ----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLS 228
Query: 233 DHISDPLHNNLLS 245
DH+++P N +
Sbjct: 229 DHLANPSAVNAFA 241
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 143/245 (58%), Gaps = 11/245 (4%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L + AA++ S + A + R WYG RP++LGP PSYL GE PGDYG+D A
Sbjct: 5 LTQRLAAVKPSGR--ATRQVTRASVEWYGPNRPQFLGPFSGSTPSYLKGEYPGDYGWDTA 62
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F +Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 63 GLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEG 122
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
LDYLG P L A Q ++ + + Q LM E R G A E L D YPG A
Sbjct: 123 GLDYLGNPSLIHA--QSIVAVLLTQLTLMGLIEGYRVNGGPAGEGL------DALYPGEA 174
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP F ELKVKE+KNGRLAMV+ GF++Q T KGP++NL DH++ P
Sbjct: 175 -FDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDAT 233
Query: 242 NLLSM 246
N ++
Sbjct: 234 NFWAI 238
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 145/235 (61%), Gaps = 12/235 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K++A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSATKKSVA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 202 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG ER ++LGP + PSYLTG+ PGDYG+D AGLS P F + E++H RWAM
Sbjct: 48 SPWYGSERVKYLGPFSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAM 107
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG D+ YPGG+ FDPL L+ DPVAF ELKVKEIKN
Sbjct: 165 QVILMGAVEGYRVPGDG---PLG--EAEDLLYPGGS-FDPLGLATDPVAFAELKVKEIKN 218
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RWAM
Sbjct: 43 DLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAM 102
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PEVL E VW++ G LDYLG P +L +Q ++ I C
Sbjct: 103 LGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNP--NLVHAQSILAIWAC 160
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G+ + GD+ YPGG FDPL + DP ELKVKEIKN
Sbjct: 161 QVILMGLVEGYRINGLPDVGE-----GGDL-YPGGQYFDPLGFADDPETLAELKVKEIKN 214
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH+ +P+ NN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 138/228 (60%), Gaps = 19/228 (8%)
Query: 20 RQARNESL-WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
RQ ++ +YG +R +LGP D PSYL GE PGDYG+D AGLS DP F +Y E+
Sbjct: 27 RQVTRAAIEFYGPDRATFLGPF-TDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIEV 85
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAMLGALG + PE+L G E VW++ G + L+YLG L A Q
Sbjct: 86 IHARWAMLGALGCVTPELLAKNGV-SFGEAVWFKAGAQIFGSDGLNYLGNSSLVHA--QS 142
Query: 139 VIVIAICQALLMVGPECARYCG----IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
+I CQ +LM G E R G +E L+ L YPGG FDPL L+ DP
Sbjct: 143 IIATLACQVILMGGAEAYRAAGEGPGLEGLDSL---------YPGGP-FDPLGLADDPDT 192
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
F ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP NN
Sbjct: 193 FSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNN 240
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 140/227 (61%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTIAKPVSSGSPWYGADRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG L
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSDGGLDYLG--NSSLVH 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 AQSILAIWATQVVLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAF 206
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL D ++DP++NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADPVNNN 253
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 149/254 (58%), Gaps = 21/254 (8%)
Query: 1 MLETKKAALQDSSKFKALARQA-----RNESLWYGEERPRWLGPIPY-DYPSYLTGELPG 54
M K+AL+ S + +A +A R WYG +RP++LGP D P+YLTGE PG
Sbjct: 1 MAVVAKSALRSSVRPATVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 60
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAG 120
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFL 171
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 121 AQIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL---- 174
Query: 172 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 175 -----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 228
Query: 232 LDHISDPLHNNLLS 245
DH+++P N +
Sbjct: 229 SDHLANPSAVNAFA 242
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 136/218 (62%), Gaps = 10/218 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 49 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 108
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 109 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 165
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 166 IWACQVILMGAVEGYRIAG----GPLGXVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 218
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 219 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 138/233 (59%), Gaps = 8/233 (3%)
Query: 24 NESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 82
N S WYG R +WLGP PSYLTGELPGDYG+D AGL DP Q+Y E++H R
Sbjct: 237 NLSAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 296
Query: 83 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 142
WAMLGA+G +PE L+ EP+W++ G E L+Y G P L A S ++ I
Sbjct: 297 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAI 354
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
Q LLM E R G A G L D YPGG FDPL L+ DP F ELKVKE
Sbjct: 355 LATQVLLMGAVEAYR-AGNTAPGQFGEDL--DRLYPGGP-FDPLGLADDPDTFAELKVKE 410
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP-LHNNLLSMVKSMDDPS 254
IKNGRLAMVA LGFY QA TG+GPV+N L H+ DP HN L + + + P+
Sbjct: 411 IKNGRLAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAALVTQFAPT 463
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 128/226 (56%), Gaps = 11/226 (4%)
Query: 32 ERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+R +WLGP P YL GELPGDYG+D AGL DP+ Q+Y E++H RWAMLGALG
Sbjct: 2 DRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALG 61
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+ PE L + EPVW++ G LDYLG L +Q +++I Q LLM
Sbjct: 62 VVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLG--DARLVHAQSILLILGTQVLLM 119
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
E R L G L D YPGG FDPL L+ DP ELKVKEIKNGRLAM
Sbjct: 120 GAAEAYRTG--NGLGNFGKDL--DSLYPGGP-FDPLGLANDPDTLAELKVKEIKNGRLAM 174
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS---MVKSMDDP 253
A GFY+QA TG+ P++NL H++ P N L+ M + M P
Sbjct: 175 FAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNAAYMTQFMPTP 220
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 145/235 (61%), Gaps = 12/235 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSAAKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
PL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 202 PLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 141/232 (60%), Gaps = 17/232 (7%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
++ + +S WYG +RP +LG + + PSYLTGE PGDYG+D AG S DP F +Y E+
Sbjct: 33 SKGSTPDSAWYGPDRPLFLGSLSGEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEV 92
Query: 79 LHARWAMLGALGALVPEVLDMVGA-FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
+HARWA+LGALG + PE+L G F +W++ G + L+YLG P +L +Q
Sbjct: 93 IHARWALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNP--NLIHAQ 150
Query: 138 GVIVIAICQALLMVGPECARYC----GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
++ Q ++M E R G+E L+ L YPGG FDPL L+ DP
Sbjct: 151 SILATLAVQVIVMGAAEGFRANGEAPGVEGLDTL---------YPGGP-FDPLGLADDPD 200
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
F ELKVKEIKNGRLAM A GF++QA TGKGP+QNL DH++DP NN +
Sbjct: 201 TFAELKVKEIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADPGVNNAFA 252
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 136/218 (62%), Gaps = 10/218 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 49 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 108
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 109 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 165
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 166 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLRLADDPDAFAELKVK 218
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 219 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 136/218 (62%), Gaps = 10/218 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 49 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 108
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 109 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 165
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 166 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 218
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 219 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 135/218 (61%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+++WYG +RP++LGP PSYLTG+ PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QNIWYGPDRPKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G + E VW++ G LDYLG P L Q ++ I
Sbjct: 104 MLGALGCFFPEILSKNGV-NFGEAVWFKAGAQIFSEGGLDYLGNPA--LVRPQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FD L L++DP F E KVKE
Sbjct: 161 VQVVLMGFVEGYRVGG----GPLGEGL--DKVYPGGA-FDHLGLAEDPDTFAEFKVKEFN 213
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + LGF++QA TGKGP++N DH++DP+ NN
Sbjct: 214 NGRLAMFSMLGFFVQAIVTGKGPIENFFDHVADPVANN 251
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 136/220 (61%), Gaps = 16/220 (7%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWAT 163
Query: 146 QALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVKE
Sbjct: 164 QVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDAFAELKVKE 213
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
IKNGRLAM + GF++QA GKGP++NL D ++ P+ NN
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVPGKGPIENLSDPLAAPVANN 253
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 140/222 (63%), Gaps = 11/222 (4%)
Query: 22 ARNESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 40 ASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 99
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
+RWAMLG LG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 100 SRWAMLGGLGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 156
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I Q +LM E R G PLG + D YPGGA FDPL L+ DP AF ELKV
Sbjct: 157 AIWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKV 209
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 210 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 136/218 (62%), Gaps = 10/218 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 49 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 108
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 109 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 165
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 166 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 218
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
EIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 219 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 136/224 (60%), Gaps = 15/224 (6%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A+ A S WYG +RP +LG PSYL GE PGDYG+D AGLS DP F +Y E+
Sbjct: 57 AKSASGASFWYGADRPGYLGAFTRS-PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEV 115
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAMLGALG +VPE+LD H+ W+ G + + + YLG+PG L ++
Sbjct: 116 IHARWAMLGALGIVVPELLDQTN--HV---AWFDAGATIFGPKGIQYLGVPG--LINAKN 168
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
+I Q +LM E R G A E L D YPG + FDPL L+ DP F EL
Sbjct: 169 IIATVAVQVILMGAIEGYRVNGGPAGEGL------DKVYPGES-FDPLGLADDPDTFAEL 221
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KVKEIKNGRLAM + GF++QA TGKGP+ NL DH+++P NN
Sbjct: 222 KVKEIKNGRLAMFSNFGFFVQAIVTGKGPIANLNDHLANPTVNN 265
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 144/235 (61%), Gaps = 12/235 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K++ + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSATKKSVV--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 202 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E V ++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVGFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKK 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 144/235 (61%), Gaps = 12/235 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K++ + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 31 SRVTMRKSATKKSVV--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 88
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 89 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 147
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 148 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 198
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 199 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 253
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R +LGP+ + PSYLTGE GDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGADRVLYLGPLSGEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWGC 163
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q + M E R G PLG + D YPGG+L DPL L+ DP AF ELKVKEIKN
Sbjct: 164 QVVFMGAVEGYRVAG----GPLGEVV--DPLYPGGSL-DPLGLADDPEAFAELKVKEIKN 216
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM++ GF++QA TGKGP++N+ DH++DP++NN
Sbjct: 217 GRLAMLSMFGFFVQAIVTGKGPLENITDHLADPVNNN 253
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 140/227 (61%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 76
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E W++ G LDYLG L
Sbjct: 77 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEACWFKAGSQIFSEGGLDYLG--NQSLIH 133
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 134 AQSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLALADDPEAF 186
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 187 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 140/227 (61%), Gaps = 10/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 76
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E W++ G LDYLG L
Sbjct: 77 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEASWFKAGSQIFSEGGLDYLG--NQSLIH 133
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 134 AQSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLALADDPEAF 186
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+++P++NN
Sbjct: 187 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 138/233 (59%), Gaps = 8/233 (3%)
Query: 24 NESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 82
N S WYG R +WLGP PSYLTGELPGDYG+D AGL DP Q+Y E++H R
Sbjct: 464 NLSAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 523
Query: 83 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 142
WAMLGA+G +PE L+ EP+W++ G E L+Y G P L A S ++ I
Sbjct: 524 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAI 581
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
Q LLM E R G A G L D YPGG FDPL L+ DP F ELKVKE
Sbjct: 582 LATQVLLMGAVEAYR-AGNTAPGQFGEDL--DRLYPGGP-FDPLGLADDPDTFAELKVKE 637
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP-LHNNLLSMVKSMDDPS 254
IKNGRLAM+A LGFY QA TG+GPV+N L H+ DP HN L + + + P+
Sbjct: 638 IKNGRLAMMAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAALVTQFAPT 690
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 127/211 (60%), Gaps = 7/211 (3%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYLTGELPGDYG+D AGL DP Q+Y E++H RWAMLGA+G +PE L+
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
EP+W++ G E L+Y G P L A S ++ I Q LLM E R G A
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAILATQVLLMGAVEAYR-AGNTAP 118
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 224
G L D YPGG FDPL L+ DP F ELKVKEIKNGRLAMVA LGFY QA TG
Sbjct: 119 GQFGEDL--DRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTG 175
Query: 225 KGPVQNLLDHISDP-LHNNLLSMVKSMDDPS 254
+GPV+N L H+ DP HN L + + + P+
Sbjct: 176 EGPVENWLYHLQDPSAHNGLTAALVTQFAPT 206
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 128/221 (57%), Gaps = 8/221 (3%)
Query: 26 SLWYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
S WYG +R +WLGP P YL GELPGDYG+D AGL DP+ Q+Y E++H RWA
Sbjct: 223 SQWYGPDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWA 282
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE L + EPVW++ G LDYLG L +Q +++I
Sbjct: 283 MLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLG--DARLVHAQSILLILG 340
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q LLM E R L G L D YPGG FDPL L+ DP ELKVKEIK
Sbjct: 341 TQVLLMGAAEAYRTG--NGLGNFGKDL--DSLYPGGP-FDPLGLANDPDTLAELKVKEIK 395
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
NGRLAM A GFY+QA TG+ P++NL H++ P N L+
Sbjct: 396 NGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLN 436
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 144/236 (61%), Gaps = 11/236 (4%)
Query: 16 KALAR-QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
K +A+ + + S WYG +R ++LGP + PSYL+GE PGDYG+D AGLS DP F K
Sbjct: 3 KTVAKPKTVSSSPWYGPDRVKYLGPFSGEAPSYLSGEFPGDYGWDTAGLSADPETFAKNR 62
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 63 ELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 121
Query: 135 GSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP A
Sbjct: 122 --QSILAIWATQVILMGAVEGYRIAG----GPLGEVE--DPLYPGGS-FDPLGLADDPEA 172
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
F ELKVKEIKNGRLAM + GF++ A TGKGP++NL DH++DP++NN + +
Sbjct: 173 FAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAFATNF 228
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 136/219 (62%), Gaps = 16/219 (7%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RW
Sbjct: 51 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 110
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 111 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 167
Query: 144 ICQALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
CQ +LM E R G E +P+ YPGG+ FDPL L+ DP AF ELKV
Sbjct: 168 ACQVILMGAVEGYRIAGGPLREVTDPI---------YPGGS-FDPLGLADDPDAFAELKV 217
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
KEIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 218 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 145/235 (61%), Gaps = 12/235 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSAAKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
+LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 HLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
PL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 202 PLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 138/228 (60%), Gaps = 9/228 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+A + R + +YG +R ++LGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 16 RATRQVTRASAEFYGPDRVKFLGPFSGATPSYLKGEYPGDYGWDTAGLSADPETFSRYRE 75
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG + PE+L GA + E VW++ G Q LDYLG +L
Sbjct: 76 LEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLG--NANLVH 133
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q ++ + + Q +LM E R G A E D YPG A FDPL L+ DP
Sbjct: 134 AQSIVAVLLTQIVLMGLIEGYRVNGGPAGEIT------DPIYPGEA-FDPLGLADDPDTL 186
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
ELKVKEIKNGRLAMV+ GF+IQA TGKGP++NL DH++ P N
Sbjct: 187 AELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETNF 234
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
+RN WYG +R WLGP PSYL GE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 2 SRNAVEWYGPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIH 61
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 62 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 119
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I CQ +LM E R G PLG L D +PG + FDPL L+ DP F ELK+
Sbjct: 120 AILGCQVVLMGLIEAYRVNG----GPLGEGL--DTLHPGES-FDPLGLADDPDTFAELKI 172
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
KEIKNGRLAM + GFY+QA TGKGP++N DH++DP +
Sbjct: 173 KEIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFN 212
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLAKNGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKE+KNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKELKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGPVQNL DH+++P NN +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFA 247
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG++ AG+S DP F + E++H+RWA
Sbjct: 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWA 69
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 70 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 126
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E G E L D YPGGA F+PL L+ DP ELKVKE+K
Sbjct: 127 CQVVLMGFVEGYGVGGGPLGEGL------DKVYPGGA-FEPLGLADDPDTAAELKVKELK 179
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP+ NN
Sbjct: 180 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 217
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 134/219 (61%), Gaps = 18/219 (8%)
Query: 28 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 87
+YG +R +LGP + PSYL GE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 31 FYGPDRAGFLGPF-TESPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 89
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG + PE+L G E VW++ G + L+YLG P L A Q +I CQ
Sbjct: 90 ALGCVTPELLAKNGV-SFGEAVWFKAGAQIFGSDGLNYLGNPSLVHA--QSIIATLACQV 146
Query: 148 LLMVGPECARYCG----IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
+LM G E R G +E L+ L YPGG FDPL L+ DP F ELK KEI
Sbjct: 147 ILMGGAEAYRANGEGPGVEGLDSL---------YPGGP-FDPLGLADDPDTFAELKTKEI 196
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KNGRLAM + GF++QA TGKGP++NL DH++DP NN
Sbjct: 197 KNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNN 235
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 127/209 (60%), Gaps = 17/209 (8%)
Query: 38 GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 97
GP+ PSYL GE PGDYG+D AGLS DP F +Y E++HARWAMLGALG L PE+L
Sbjct: 5 GPLSSATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELL 64
Query: 98 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 157
G F EPVWW+ G L E LDYLG P +L +Q ++ Q +LM E R
Sbjct: 65 SQNG-FTFQEPVWWKAGAQILSSEGLDYLGKP--NLVHAQSIVATLAVQVILMGSAEAYR 121
Query: 158 YC----GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 213
G++ L+ L YPGG FDPL + DP ELKVKEIKNGRLAM +
Sbjct: 122 AAGSAPGVDGLDKL---------YPGGP-FDPLEFASDPDTLAELKVKEIKNGRLAMFSM 171
Query: 214 LGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GF++QA TGKGP++NL DH++ P NN
Sbjct: 172 FGFFVQAIVTGKGPLENLNDHLASPYANN 200
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 131/215 (60%), Gaps = 10/215 (4%)
Query: 28 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 87
WYG ER +WLGP + P YLTGE GDYG+D AGLS DP F++Y E++HARWAMLG
Sbjct: 40 WYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 99
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG + PE+L G E VW++ G Q L+YLG L A Q ++ CQ
Sbjct: 100 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA--QSILATLACQV 156
Query: 148 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
+LM E R G A E L D YPG A FDPL L+ DP F ELKVKEIKNGR
Sbjct: 157 ILMGLVEGYRVNGGPAGEGL------DPLYPGEA-FDPLGLADDPDTFAELKVKEIKNGR 209
Query: 208 LAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
LAM + GF++QA TG+GP+ NL H+SDP NN
Sbjct: 210 LAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 244
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 143/237 (60%), Gaps = 18/237 (7%)
Query: 3 ETKKAALQDSSKFKALARQ--------ARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 54
+ +AA+ S K AR+ + +S WYG ERP +LG + PSYLTGE PG
Sbjct: 8 SSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPG 67
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 68 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAG 126
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 174
Q LDYLG P +L +Q ++ I Q LLM E R G PLG L D
Sbjct: 127 AQIFQEGGLDYLGNP--NLVHAQSILAILGTQVLLMGAIEGYRVNG----GPLGEGL--D 178
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
YPGG+ FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP+QNL
Sbjct: 179 KLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 148/254 (58%), Gaps = 21/254 (8%)
Query: 1 MLETKKAALQDSSKFKALARQA-----RNESLWYGEERPRWLGPIPY-DYPSYLTGELPG 54
M K+A + S + +A +A R WYG +RP++LGP D P+YLTGE PG
Sbjct: 1 MAAIVKSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 60
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAG 120
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFL 171
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 121 AQIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL---- 174
Query: 172 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 175 -----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 228
Query: 232 LDHISDPLHNNLLS 245
DH+++P N +
Sbjct: 229 SDHLANPSAVNAFA 242
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 148/254 (58%), Gaps = 21/254 (8%)
Query: 1 MLETKKAALQDSSKFKALARQA-----RNESLWYGEERPRWLGPIPY-DYPSYLTGELPG 54
M K+A++ S + + +A R WYG +RP++LGP D P+YLTGE PG
Sbjct: 1 MAAIPKSAVRSSVRPATASSRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 60
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAG 120
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFL 171
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 121 AQIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL---- 174
Query: 172 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 175 -----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 228
Query: 232 LDHISDPLHNNLLS 245
DH+++P N +
Sbjct: 229 SDHLANPSAVNAFA 242
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 136/222 (61%), Gaps = 16/222 (7%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 34 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 93
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 94 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 151
Query: 147 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 152 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 201
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KNGRLAM + GF++QA TGKGP++NL DH+++P N +
Sbjct: 202 KNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFA 243
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 140/222 (63%), Gaps = 11/222 (4%)
Query: 22 ARNESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 102
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 SRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 159
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
I Q +LM E R G PLG + D YPGGA FDPL L+ DP A ELKV
Sbjct: 160 AIWAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGA-FDPLGLADDPEACAELKV 212
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
K+IKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 213 KKIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 132/221 (59%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 96 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 152
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 153 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 205
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGPVQNL DH+++P NN +
Sbjct: 206 RLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFA 246
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 132/221 (59%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKNGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGPVQNL DH+++P NN +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFA 247
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 142/231 (61%), Gaps = 10/231 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S W+G + ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 4 KVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 63
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 64 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 120
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I Q +LM E R G PLG + D YPGG+ FDPL L++ P AF ELK
Sbjct: 121 LAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEVPEAFAELK 173
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
VKE+KNGRLAM + GF++ A TGKGP++NL DH++DP++NN S +
Sbjct: 174 VKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNF 224
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 148/253 (58%), Gaps = 21/253 (8%)
Query: 1 MLETKKAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGD 55
M K+A++ S + R AR WYG +RP++LGP D P+YLTGE PGD
Sbjct: 1 MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGD 60
Query: 56 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 115
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 61 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGA 119
Query: 116 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLP 172
L+YLG +L +Q +I Q ++M E R G E L+PL
Sbjct: 120 QIFAEGGLNYLG--NENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL----- 172
Query: 173 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
+PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP+QNL
Sbjct: 173 ----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLD 227
Query: 233 DHISDPLHNNLLS 245
DH+++P N +
Sbjct: 228 DHLANPTAVNAFA 240
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 147/248 (59%), Gaps = 21/248 (8%)
Query: 6 KAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDV 60
K+A++ S + R AR WYG +RP++LGP D P+YLTGE PGDYG+D
Sbjct: 3 KSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDT 62
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 63 AGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGSQIFAE 121
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINY 177
L+YLG +L +Q +I Q ++M E R G E L+PL +
Sbjct: 122 GGLNYLG--NENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL---------H 170
Query: 178 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISD 237
PGGA FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP+QNL DH+++
Sbjct: 171 PGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLAN 229
Query: 238 PLHNNLLS 245
P N +
Sbjct: 230 PTAVNAFA 237
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 130/217 (59%), Gaps = 10/217 (4%)
Query: 13 SKFKALARQARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
++ K++ +RN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+
Sbjct: 13 AQTKSIRNVSRNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFK 72
Query: 72 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
Y E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG
Sbjct: 73 AYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NS 130
Query: 132 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
+L +Q ++ I CQ +LM E R G E L PGD FDPL L+ D
Sbjct: 131 NLIHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGD-------KFDPLGLADD 183
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 228
P F ELKVKEIKNGRLAM + GFY+QA TGKGP+
Sbjct: 184 PDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 133/227 (58%), Gaps = 11/227 (4%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + R +YG R +LGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 24 KGTKQVTRAAIEFYGPNRAGYLGPFTKS-PSYLNGEYPGDYGWDTAGLSADPETFARYRE 82
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWAMLGALG + PE+L G E VWW+ G LDYLG P L A
Sbjct: 83 IEVIHARWAMLGALGCVTPELLAKNGV-SFGEAVWWKAGSQIFAPGGLDYLGNPSLIHA- 140
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q +I I Q LLM E R G A E L D YPG A FDPL L+ DP F
Sbjct: 141 -QSIIAIVFSQVLLMGLIEGYRVNGGPAGEGL------DALYPGEA-FDPLGLADDPDTF 192
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EL+VKEIKNGRLAM + GF++QA TGKGP++NL DH+++P NN
Sbjct: 193 AELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLANPSVNN 239
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 132/221 (59%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGPVQNL DH+++P NN +
Sbjct: 207 RLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFA 247
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 141/232 (60%), Gaps = 12/232 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 34 SRVTMRKSATKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 91
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 92 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 151 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 201
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHIS 236
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++
Sbjct: 202 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 135/226 (59%), Gaps = 19/226 (8%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
+ TKK +S + + + +S+WYG ERP++LGP D PSYLTGE PGDYG+D A
Sbjct: 15 VTTKKV----TSMRRTQKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFPGDYGWDTA 70
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 71 GLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEG 130
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEPLGIFLPGDINYP 178
LDYLG L +Q ++ I CQ LLM E R G E L+PL YP
Sbjct: 131 GLDYLG--NSSLVHAQYILAILGCQVLLMGAIEAYRVNGGPLGEGLDPL---------YP 179
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 224
GG FDPL L+ DP F ELKVKEIKNGRLAM + GFY+QA TG
Sbjct: 180 GGQ-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQALVTG 224
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 136/222 (61%), Gaps = 16/222 (7%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 52 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 111
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 112 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 169
Query: 147 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 170 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 219
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KNGRLAM + GF++QA TGKGP++NL DH+++P N +
Sbjct: 220 KNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFA 261
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 133/215 (61%), Gaps = 10/215 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 49 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 108
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 109 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 165
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 166 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 218
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHIS 236
EIKNGRLAM + GF++QA TGKGP++NL DH++
Sbjct: 219 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 131/208 (62%), Gaps = 10/208 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG L D YPGGA FDPL L+ DP AF ELKVKEIK
Sbjct: 163 VQVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIK 215
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
NGRLAM + GF++QA TGKGP++N L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENSL 243
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 140/231 (60%), Gaps = 12/231 (5%)
Query: 6 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 65
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 35 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 92
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 93 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 151
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 152 LGNPSLVHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEIT--DPIYPGGS-FDP 202
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHIS 236
L L+ DP AF ELKVKE+KNGRLAM + GF+ QA TGKGP++NL DH++
Sbjct: 203 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLADHLA 253
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 131/221 (59%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG PE+L G E VW++ G LDYLG P L A Q ++ + Q
Sbjct: 96 GALGCQTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATSAVQ 152
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 153 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 205
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLA + GF++QA TGKGPVQNL DH+++P NN +
Sbjct: 206 RLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFA 246
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 138/218 (63%), Gaps = 11/218 (5%)
Query: 26 SLW-YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
S W +G ER +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 19 STWCFGFERYGYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 78
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 79 MLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWA 135
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG + G + YPGG+ FDPL L+ DP AF ELKVKEIK
Sbjct: 136 TQVILMGAVEGYRVAG----GPLGK-VTGPL-YPGGS-FDPLGLADDPEAFAELKVKEIK 188
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 189 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 226
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L G E VW++ G Q L+YLG P L A Q ++ Q
Sbjct: 97 GALGIVTPELLQKNGV-QFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA--QNIVATLAVQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+L+ E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VVLLGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGP+QNL DH+S+P NN +
Sbjct: 207 RLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFA 247
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 131/216 (60%), Gaps = 8/216 (3%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +RP++LGP D P+YLTGE GDYG+D AGLS DP F KY E++HARWAML
Sbjct: 29 WYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAML 88
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L G E VW++ G Q L+YLG +L +Q ++ Q
Sbjct: 89 GALGCITPELLAKNGV-PFGEAVWFKAGAQIFQDGGLNYLG--NENLVHAQSILATLAVQ 145
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
LLM E R G P G D YPGGA FDPL L+ DP ELKVKEIKNG
Sbjct: 146 VLLMGAAESYRANGG---APGGFGEDLDSLYPGGA-FDPLGLADDPDTLAELKVKEIKNG 201
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
RLAM + GF++QA TG+GP+ NL H+SDP NN
Sbjct: 202 RLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 237
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 137/222 (61%), Gaps = 17/222 (7%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 12 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 71
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L G E VW++ G L+YLG +L +Q +I Q
Sbjct: 72 GALGCITPELLAKNG-IPFGEAVWFKAGSQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 128
Query: 147 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 129 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 178
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KNGRLAM + GF++QA TGKGP+QNL DH+++P N +
Sbjct: 179 KNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFA 220
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 131/221 (59%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
LAM + GF++QA TGKGPVQNL DH+++P NN +
Sbjct: 207 ALAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFA 247
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP FQ+Y E++HARWAML
Sbjct: 28 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAML 87
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L G E VW++ G Q L+YLG P L A Q ++ Q
Sbjct: 88 GALGIVTPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA--QNIVATLAVQ 144
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+L+ E R G A E L PG+ FDPL L+ DP F ELKVKEIKNG
Sbjct: 145 VILLGLVEGYRVNGGPAGEGLDPLYPGES-------FDPLGLADDPDTFAELKVKEIKNG 197
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
RLAM + GF++QA TGKGP+QNL DH+S+P NN +
Sbjct: 198 RLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFA 238
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 137/222 (61%), Gaps = 17/222 (7%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 32 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + PE+L G E VW++ G L+YLG +L +Q +I Q
Sbjct: 92 GALGCITPELLAKNG-IPFGEAVWFKAGAQIFAEGGLNYLG--NENLIHAQSIIATLAFQ 148
Query: 147 ALLMVGPECARYCG---IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
++M E R G E L+PL +PGGA FDPL L+ DP F ELKVKEI
Sbjct: 149 VVVMGLAEAYRANGGPLGEGLDPL---------HPGGA-FDPLGLADDPDTFAELKVKEI 198
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KNGRLAM + GF++QA TGKGP+QNL DH+++P N +
Sbjct: 199 KNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFA 240
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 128/213 (60%), Gaps = 9/213 (4%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
+S + + + +++WYG +RP++LGP D PSYLTGE PGDYG+D AGLS DP F+
Sbjct: 21 TSMRRTQKKSSAPDNVWYGPDRPQFLGPFSGDCPSYLTGEFPGDYGWDTAGLSADPETFR 80
Query: 72 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
+Y E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG
Sbjct: 81 RYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NS 138
Query: 132 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
+L +Q ++ I CQ LLM E R G E L PGD FDPL L+ D
Sbjct: 139 NLVHAQSILAILGCQVLLMGAIEAYRVNGGPLGEGLDPLYPGD-------KFDPLGLADD 191
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 224
P F ELK+KEIKNGRLAM + GFY+QA TG
Sbjct: 192 PDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTG 224
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 134/216 (62%), Gaps = 7/216 (3%)
Query: 28 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG +RP++LGP D P YLTGE PGDYG+D AGLS DP F +Y E++HARWAML
Sbjct: 28 WYGPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAML 87
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG +VPE+L G VW++ G + + L+YLG P +L +Q ++ Q
Sbjct: 88 GALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNP--NLIHAQSILATLAFQ 145
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
++M E R+ G P G D YPG FDP+ L++DP F ELKVKEIKNG
Sbjct: 146 VVVMGAAESFRFNGG---APGGFLEGNDRLYPGDQ-FDPMGLAEDPDTFAELKVKEIKNG 201
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
RLAM + GF++QA TG+GP+ NL H++DP NN
Sbjct: 202 RLAMFSMFGFFVQAIVTGQGPIANLDAHLADPSVNN 237
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 143/230 (62%), Gaps = 9/230 (3%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ A++A ES +YG RP +LG + + P+YL GE PGDYG+D AGLS DP F++Y
Sbjct: 28 RTQAKKAVPESPFYGPNRPLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQ 87
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++HARWA+LGALG +VPE+L G + VW++VG + L+YLG +L
Sbjct: 88 LELIHARWALLGALGCVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLG--NENLVH 145
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
+Q ++ + Q +LM E R G PLG L D YPGGA FDPL L+ DP
Sbjct: 146 AQSIVATLLVQLVLMGWAEGYRING----GPLGEGL--DPLYPGGA-FDPLGLADDPDTL 198
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
ELKVKE+KNGR+AM A GF +QA T KGP++NL DH++ P NN+ S
Sbjct: 199 AELKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLADHLAAPGTNNVFS 248
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 129/215 (60%), Gaps = 10/215 (4%)
Query: 28 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 87
+YG R +WLGP P YLTGE GDYG+D AGLS DP F++Y E++HARWAMLG
Sbjct: 39 FYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 98
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG + PE+L G E VW++ G Q L+YLG L A Q ++ CQ
Sbjct: 99 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA--QSILATLACQV 155
Query: 148 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
+LM E R G A E L D YPG A FDPL L+ DP F ELKVKEIKNGR
Sbjct: 156 ILMGLVEGYRVNGGPAGEGL------DPLYPGEA-FDPLGLADDPDTFAELKVKEIKNGR 208
Query: 208 LAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
LAM + GF++QA TG+GP+ NL H+SDP NN
Sbjct: 209 LAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 243
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 21 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 39 TAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 98
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQG 138
RWAMLG G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 99 CRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------IN 151
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
+I+ I + +L+ G E R LE D +PGG FDPL L+ DP L
Sbjct: 152 LILAVIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAALL 202
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
KVKEIKNGRLAM + LGF+IQA TG+GPV+NL H+SDP NNLL+++ +
Sbjct: 203 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISA 253
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 139/244 (56%), Gaps = 30/244 (12%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LVKKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F AMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETF-------------AMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEG 129
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EALEPLGIFLPGDINYP 178
LDYLG P +L +Q ++ I Q +LM E R G E L+PL YP
Sbjct: 130 GLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL---------YP 178
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 179 GGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 237
Query: 239 LHNN 242
NN
Sbjct: 238 TANN 241
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 130/210 (61%), Gaps = 10/210 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 54 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 113
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 114 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 170
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 171 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 223
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
EIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 224 EIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 137/227 (60%), Gaps = 12/227 (5%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 64
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 39 SRVTMRKSATKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 96
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 97 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLD 155
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
YLG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FD
Sbjct: 156 YLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FD 206
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
PL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 207 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 129/210 (61%), Gaps = 10/210 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 54 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 113
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 114 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 170
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 171 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 223
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
EIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 224 EIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 131/213 (61%), Gaps = 10/213 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+
Sbjct: 48 SESPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHS 107
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 108 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 164
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 165 IWASQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 217
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 234
E+KNGRLAM + GF++QA TGKGP++NL DH
Sbjct: 218 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 129/210 (61%), Gaps = 10/210 (4%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 33 SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 92
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 93 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILA 149
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVK
Sbjct: 150 IWACQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPDAFAELKVK 202
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
EIKNGRLAM + GF++QA TGKGP++NL
Sbjct: 203 EIKNGRLAMFSMFGFFVQAIVTGKGPIENL 232
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
+ S WYG +R ++LGP + PSYLTGE P G DP F K E++HARW
Sbjct: 46 SSSPWYGPDRVKYLGPFSGEPPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARW 105
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 AMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIW 162
Query: 144 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKEI
Sbjct: 163 ACQVILMGAVEGYRVAG----GPLGEIT--DPLYPGGS-FDPLGLADDPEAFAELKVKEI 215
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
KNGRLAM + GFY+QA TGKGP++NL DH++DP++NN
Sbjct: 216 KNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNN 254
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 18/223 (8%)
Query: 28 WYGEERPRWL--GPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYGE R +L G + D P YLTGE+PGDYGFD GLSK P F KY +E++HARWA
Sbjct: 58 WYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWA 117
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G ++PE + GA E VW++ G L G TL+Y G A +V+A+
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFG------ANIPINLVLAV 171
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
+++VG A Y ++ LG+ D +PGG FDPL L+KDP F LKVKEIK
Sbjct: 172 LAEVILVG--GAEYY--RSINNLGL----DRLHPGGP-FDPLGLAKDPDNFALLKVKEIK 222
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
NGRLAM A LGF+IQA TG+GPV+NL H+SDP NNLLS++
Sbjct: 223 NGRLAMFAMLGFFIQAYATGEGPVENLTTHLSDPFGNNLLSVI 265
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 133/241 (55%), Gaps = 37/241 (15%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LVKKVGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H RWAMLGALG + PE+L G E VW++
Sbjct: 84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFK--------- 133
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
I Q +LM E R G PLG L D YPGGA
Sbjct: 134 -------------------AIWASQVVLMGLIEGYRVGG----GPLGEGL--DPLYPGGA 168
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP N
Sbjct: 169 -FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTAN 227
Query: 242 N 242
N
Sbjct: 228 N 228
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 39 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 98
P + PSYLTGE PGDYG+D AGLS DP F K E++H+ WAMLGALG + PE+L
Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 99 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 158
G E VW++ G LDYLG P L A Q ++ I CQ +LM E R
Sbjct: 61 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRI 117
Query: 159 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 218
G PLG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++
Sbjct: 118 AG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 170
Query: 219 QAAFTGKGPVQNLLDHISDPLHNN 242
QA TGKGP++NL DH++DP++NN
Sbjct: 171 QAIVTGKGPLENLADHLADPVNNN 194
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/198 (51%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 48 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
LTGE PGDYG+D AGLS DP F+KY E++HARWAMLGALG + PE+L G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 167
VW+R G + LDYLG P L A S G IVI+ Q +LM E R G A E L
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVIS--QVILMGLIEGYRVNGGPAGEGL 118
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
PG+ FDPL L+ DP F ELK+KEIKNGRLAM + GFY+QA TGKGP
Sbjct: 119 DPLYPGES-------FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGP 171
Query: 228 VQNLLDHISDPLHNNLLS 245
V+N +H++DP N S
Sbjct: 172 VENWAEHVADPFTANAFS 189
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 145/226 (64%), Gaps = 18/226 (7%)
Query: 28 WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L G + D P YLTGE+PGDYG+D GLSK P F +Y +E++HARWA
Sbjct: 6 WYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 65
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VWW+ G L+G+++ Y G +P L+LA +
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVP-LNLAAA------ 118
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R PLG L D +PGGA FDPL L+KDP F LKVKE
Sbjct: 119 VIAEVILVGGAEYYRSTNK---SPLGSDL--DRLHPGGA-FDPLGLAKDPDQFALLKVKE 172
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
IKNGRLAM + LGF++QA TG+GPV+NL H+SDP NNLL++++
Sbjct: 173 IKNGRLAMFSMLGFFVQAYVTGEGPVENLSAHLSDPFGNNLLTVIQ 218
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 150/237 (63%), Gaps = 29/237 (12%)
Query: 24 NESL--WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
NE L WYG +R +L G + D P+YLTGE+PGDYG+D GLSK P F +Y +E+
Sbjct: 42 NEELAKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYEL 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGS 136
+HARWAMLGA G ++PE + GA E VWW+ G L+G+++ Y G +P ++LA +
Sbjct: 102 IHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVP-INLAAA 160
Query: 137 QGVIVIAICQALLMVGPECARYC-----GIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
I + +L+ G E R G++ L+ L +PGGA FDPL L+KD
Sbjct: 161 ------VIAEVILVGGAEYYRSTNKDVYGLQDLDRL---------HPGGA-FDPLGLAKD 204
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
P F LKVKEIKNGRLAM + LGF++QA TG+GPV+NL H+SDP NNLL++++
Sbjct: 205 PDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVIQ 261
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 130/216 (60%), Gaps = 10/216 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAVKAKQVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NL 152
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
+Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEIV--DPLYPGGS-FDPLGLADDPE 205
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
AF ELKVKEIKNGRLAM + GF++QA TG P +
Sbjct: 206 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGGEPCR 241
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 122/195 (62%), Gaps = 8/195 (4%)
Query: 48 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
LTGE PGDYG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 167
PVW++ G LDYLG P +L +Q ++ + Q +LM E R G+ +
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE- 117
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
G+ YPGG FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP
Sbjct: 118 -----GNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 172
Query: 228 VQNLLDHISDPLHNN 242
++NLLDH+ +P+ NN
Sbjct: 173 LENLLDHLDNPVANN 187
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 134/232 (57%), Gaps = 16/232 (6%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + AR+ S WYG +R +LGP+ PSYLTGE PGDYG+D GLS DP F K
Sbjct: 34 KTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKN 93
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWA+ LG + PE+L G E VW++ G L + G P L
Sbjct: 94 RELEVIHCRWAIAVGLGCVFPELLARNGV-KFGEGVWFKAGSQIFSEGGLSHPGNPSLVH 152
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSK 190
A Q ++ I CQ +LM E G E ++PL Y GG+ FDPL L
Sbjct: 153 A--QSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPL---------YLGGS-FDPLGLGD 200
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
DP F ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 201 DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 136/229 (59%), Gaps = 19/229 (8%)
Query: 24 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 64 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 123
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 124 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPIN 178
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
+IV + + +L+ G E R LE D +PGG FDPL L+KDP L
Sbjct: 179 LIVAVVAEIVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALL 229
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
KVKEIKNGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 230 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 278
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 128/215 (59%), Gaps = 7/215 (3%)
Query: 28 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 87
+YG +R ++LGP + YLTGE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 29 FYGPDRAKFLGPFTPE-SDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLG 87
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG + PE+L G E VW++ G Q L+YLG +L +Q ++ Q
Sbjct: 88 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQDGGLNYLG--NENLVHAQSILATLAVQV 144
Query: 148 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
+LM E R G P G D YPGG FDPL L+ DP ELKVKE+KNGR
Sbjct: 145 ILMGAAEAYRANGGA---PGGFGEDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGR 201
Query: 208 LAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
LAM + GF++QA TG+GP+ NL H++DP NN
Sbjct: 202 LAMFSMFGFFVQAIVTGQGPIANLDAHLADPSGNN 236
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 136/229 (59%), Gaps = 19/229 (8%)
Query: 24 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 63 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 122
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 123 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPIN 177
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
+I+ + + +L+ G E R LE D +PGG FDPL L+KDP L
Sbjct: 178 LILAVVAEIVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALL 228
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
KVKEIKNGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 277
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 126/223 (56%), Gaps = 33/223 (14%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 40 KPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 100 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 156
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
+ I CQ +LM E R ++ DP AF ELK
Sbjct: 157 LAIWACQVVLMGAVEGYR------------------------------IADDPEAFAELK 186
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
VKEIKNGRLAM + GF++QA TGKGPV+NL DH++DP++NN
Sbjct: 187 VKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 229
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 131/218 (60%), Gaps = 9/218 (4%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+L A + S K K+ A A N S WYG +R +WLGP+ P+YLTGELPGDYG+D
Sbjct: 126 LLPVSVATMATSGK-KSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDT 184
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGL DP+ +Y E++HARWAMLGALG + PE+L G VW++ G
Sbjct: 185 AGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSA 244
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+ L+YLG P L A Q V++ + +M E RY G PLG L D YPGG
Sbjct: 245 DGLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEGYRYGG---GWPLGDDL--DRLYPGG 297
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 218
FDPL L+ DP AF ELKVKE+KNGRLAMVA LGFY+
Sbjct: 298 P-FDPLGLANDPDAFAELKVKEVKNGRLAMVAMLGFYV 334
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 139/241 (57%), Gaps = 32/241 (13%)
Query: 31 EERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
EE +W GP +P D P YL GE+PGDYG+D GLSK P F KY +E++
Sbjct: 80 EELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELI 139
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G +H+ +
Sbjct: 140 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGA-SIHI----NL 194
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
I + + +L+ G E R E D +PGG FDPL L+KDP F LK
Sbjct: 195 IAAVVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFALLK 245
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLE 259
VKEIKNGRLAM + LGF++QA TG+GPV+NL H+SDP NNLL+++ G LE
Sbjct: 246 VKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL-------GGSLE 298
Query: 260 R 260
R
Sbjct: 299 R 299
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 134/225 (59%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 74 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 133
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G +VPE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSIP-------INLVVA 186
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 187 VIAEVVLLGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 237
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 238 IKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVL 282
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 135/229 (58%), Gaps = 19/229 (8%)
Query: 24 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 63 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 122
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 123 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPIN 177
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
I+ + + +L+ G E R LE D +PGG FDPL L+KDP L
Sbjct: 178 FILAVVAEIVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALL 228
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
KVKEIKNGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 277
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 131/228 (57%), Gaps = 24/228 (10%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
+YG R +WLGP + P+Y + PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 40 FYGPNRAKWLGPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 99
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA-------GSQGV 139
GALG + PE+L G E VW++ G LDYLG P L A G V
Sbjct: 100 GALGCITPELLAKSGT-QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGRFKV 158
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
I++ + + + G E L+PL YPG + FDPL L+ DP F ELK
Sbjct: 159 ILMGLVEGYRVNGGPAG-----EGLDPL---------YPGES-FDPLGLADDPDTFAELK 203
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
VKEIKNGRLAM + GF++QA TGKGP+QNL DH+S+P NN +
Sbjct: 204 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFA 251
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 129/214 (60%), Gaps = 10/214 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 9 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 68
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 69 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 127
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 128 A--QSILAIWAVQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 178
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
AF ELKVKE+KNGRLAM + GF++QA TGKGP
Sbjct: 179 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 132/224 (58%), Gaps = 17/224 (7%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D +GLSK P F KY FE++HARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G ++PE + GA E VW++ G L G TL+Y G P +IV I
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPINLIVAVI 185
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
+ +L+ G E R E D +PGG FDPL L+ DP LKVKEIK
Sbjct: 186 AEIVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLANDPDQAALLKVKEIK 236
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
NGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 237 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 280
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 125/202 (61%), Gaps = 11/202 (5%)
Query: 24 NESL--WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
NE L +YG +R WLGP+ P+YLTGE PGDYG+D AGLS DP F++Y E++HA
Sbjct: 40 NEKLGAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHA 99
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G + EPVW++ G Q LDYLG GL A Q ++
Sbjct: 100 RWAMLGALGCVTPELLAKNGT-PIAEPVWFKAGAQIFQEGGLDYLGNAGLIHA--QSILA 156
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G A E L D +PGG FDPL L++DP AF ELKVK
Sbjct: 157 TLAVQVILMGAIEGYRVNGGPAGEGL------DKLHPGGQFFDPLGLAEDPDAFAELKVK 210
Query: 202 EIKNGRLAMVAWLGFYIQAAFT 223
EIKNGRLAM + GF++QA T
Sbjct: 211 EIKNGRLAMFSMFGFFVQAIVT 232
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 137/242 (56%), Gaps = 11/242 (4%)
Query: 3 ETKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+TK ++ +L N LWYG +R ++LGP PSY TGE PGDYG+D
Sbjct: 20 QTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFSVQTPSYPTGEFPGDYGWDT 79
Query: 61 AGLSKDP-MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 119
AGLS DP AF K E+++ RWAMLGA G + PEVL EPVW++ G
Sbjct: 80 AGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFS 139
Query: 120 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 179
LDYLG P +L +Q ++ + Q +LM E R I + +G G+ YPG
Sbjct: 140 EGGLDYLGNP--NLVHAQSILAVLGFQVILMGLVEGFR---INRFDGVG---EGNDLYPG 191
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
G FD L+L D V F ELKVKEIKNG LAM + GF++QA TGK P+++LLDH+ + +
Sbjct: 192 GKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKDPLESLLDHLDNFV 251
Query: 240 HN 241
N
Sbjct: 252 AN 253
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 138/243 (56%), Gaps = 36/243 (14%)
Query: 31 EERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
EE +W GP +P D P YL GE+PGDYG+D GLSK P F KY +E++
Sbjct: 80 EELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELI 139
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQ 137
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G IP
Sbjct: 140 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------I 192
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
+I + + +L+ G E R E D +PGG FDPL L+KDP F
Sbjct: 193 NLIAAVVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFAL 243
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCP 257
LKVKEIKNGRLAM + LGF++QA TG+GPV+NL H+SDP NNLL+++ G
Sbjct: 244 LKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL-------GGS 296
Query: 258 LER 260
LER
Sbjct: 297 LER 299
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 131/225 (58%), Gaps = 17/225 (7%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G ++PE + GA E VW++ G L G TL+Y G P +IV I
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPINLIVAVI 185
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
+ +L+ G E R E D +PGG FDPL L+ DP LKVKEIK
Sbjct: 186 AEIVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLANDPDQAALLKVKEIK 236
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
NGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 237 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISG 281
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 138/243 (56%), Gaps = 36/243 (14%)
Query: 31 EERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
EE +W GP +P D P YL GE+PGDYG+D GLSK P F KY +E++
Sbjct: 55 EELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELI 114
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQ 137
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G IP
Sbjct: 115 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------I 167
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
+I + + +L+ G E R E D +PGG FDPL L+KDP F
Sbjct: 168 NLIAAVVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFAL 218
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCP 257
LKVKEIKNGRLAM + LGF++QA TG+GPV+NL H+SDP NNLL+++ G
Sbjct: 219 LKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL-------GGS 271
Query: 258 LER 260
LER
Sbjct: 272 LER 274
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 138/243 (56%), Gaps = 36/243 (14%)
Query: 31 EERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
EE +W GP +P D P YL GE+PGDYG+D GLSK P F KY +E++
Sbjct: 80 EELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELI 139
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQ 137
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G IP
Sbjct: 140 HARWAMLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------I 192
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
+I + + +L+ G E R E D +PGG FDPL L+KDP F
Sbjct: 193 NLIAAVVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFAL 243
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCP 257
LKVKEIKNGRLAM + LGF++QA TG+GPV+NL H+SDP NNLL+++ G
Sbjct: 244 LKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL-------GGS 296
Query: 258 LER 260
LER
Sbjct: 297 LER 299
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 132/227 (58%), Gaps = 18/227 (7%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + + S WYG +R ++LGP + PSYLTGE GLS DP F K
Sbjct: 36 KTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRE 87
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 88 LEVIHSRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 145
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP A
Sbjct: 146 -QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAL 197
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 198 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 131/223 (58%), Gaps = 17/223 (7%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G ++PE + GA E VW++ G L G TL+Y G P +IV I
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP-----IPINLIVAVI 187
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
+ +L+ G E R E D +PGG FDPL L+ DP LKVKEIK
Sbjct: 188 AEIVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLANDPDQAALLKVKEIK 238
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
NGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 239 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 281
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 134/225 (59%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GLSK P F+KY FE++HARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +++
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 184
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R + D +PGG FDPL L+KDP LKVKE
Sbjct: 185 VVAEVILVGGAEYFRITNGLGFD--------DKLHPGGP-FDPLGLAKDPDQAALLKVKE 235
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM A LGF+ QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 236 IKNGRLAMFAMLGFFFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 280
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 134/225 (59%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P+YLTGE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +I
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLIFA 184
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 185 VVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLANDPDQAALLKVKE 235
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM A LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 236 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAAHLSDPFGNNLLTVI 280
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 132/235 (56%), Gaps = 30/235 (12%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG++ AGLS DP F K
Sbjct: 21 KTTTKKVSSGSPWYGPDRVKYLGPFFGEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRE 80
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H+RWAM W++ LDYLG P L A
Sbjct: 81 LEVIHSRWAMFDR---------------------WFKARSQIFSEGGLDYLGNPSLVHA- 118
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF
Sbjct: 119 -QSILAIWACQVILMGAVEGYRIAG----GPLGEVI--DPLYPGGS-FDPLGLADDPEAF 170
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 171 VELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 225
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 131/226 (57%), Gaps = 21/226 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +IV
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIP-------INLIVA 182
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R E D +PGG FDPL L+ DP LKVKE
Sbjct: 183 VIAEVVLVGGAEYYRIINGLNFE--------DKLHPGGP-FDPLGLADDPDQAAILKVKE 233
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
IKNGRLAM A LGFY QA TG+GPV+NL H+SDP NNLL+++
Sbjct: 234 IKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 279
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 123/194 (63%), Gaps = 9/194 (4%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LG + + P+YLTGE GDYG+D AGLS DP F++Y E++HARWA
Sbjct: 39 DSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWA 98
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G + EPVW++ G Q L+YLG +L +Q +IV +
Sbjct: 99 MLGALGCITPELLANNGT-PIAEPVWFKAGAQIFQDGGLNYLG--NENLVHAQSIIVTLL 155
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G A E L D YPGG FDPL L+ DP F ELKVKEIK
Sbjct: 156 VQVILMGTVEGYRVNGGPAGEGL------DKLYPGGDFFDPLGLADDPDTFAELKVKEIK 209
Query: 205 NGRLAMVAWLGFYI 218
NGRLAM + GF++
Sbjct: 210 NGRLAMFSMFGFFV 223
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 137/243 (56%), Gaps = 36/243 (14%)
Query: 31 EERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
EE +W GP +P D P YL GE+PGDYG+D GL K P F KY +E++
Sbjct: 80 EELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELI 139
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQ 137
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G IP
Sbjct: 140 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------I 192
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
+I + + +L+ G E R E D +PGG FDPL L+KDP F
Sbjct: 193 NLIAAVVAEVILVGGAEYYRATNGLDFE--------DKLHPGGP-FDPLGLAKDPDQFAL 243
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCP 257
LKVKEIKNGRLAM + LGF++QA TG+GPV+NL H+SDP NNLL+++ G
Sbjct: 244 LKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL-------GGS 296
Query: 258 LER 260
LER
Sbjct: 297 LER 299
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 133/226 (58%), Gaps = 21/226 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 64 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 123
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA GA++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 124 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLVVA 176
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 177 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 227
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
IKNGRLAM + L F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 228 IKNGRLAMFSMLAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 273
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 132/226 (58%), Gaps = 21/226 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA GA++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLVVA 177
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VIAEVILVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 228
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
IKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 229 IKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 274
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 132/226 (58%), Gaps = 21/226 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA GA++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLVVA 177
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VIAEVVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 228
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
IKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 229 IKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 274
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 131/225 (58%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA GA++PE + GA E VW++ G L G TL Y G IP ++V
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIP-------INLVVA 177
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 178 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 228
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 229 IKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 273
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 133/227 (58%), Gaps = 21/227 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P+YL GE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 61 WYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 120
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVVA 173
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+ DP LK KE
Sbjct: 174 VIAEVVLLGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKAKE 224
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
IKNGRLAM A LGF++QA TG+GPV+NL H+SDP NNLL+++ S
Sbjct: 225 IKNGRLAMFAMLGFFLQAYVTGEGPVENLSKHLSDPFGNNLLTVISS 271
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 133/225 (59%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 69 WYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 128
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL Y G IP +++
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIP-------INLVLA 181
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 182 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 232
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM + LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 233 IKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVI 277
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 137/238 (57%), Gaps = 13/238 (5%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD-YLGIPGLHLA 134
E++H+RWAMLGALG + PE+L G E VW + ++ LQ + P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWVQGWFTDLQRRRIGPTWATPSLVHA 155
Query: 135 GSQ--GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
+ + L+ R + PLG D+ YPGG+ FDPL L+ DP
Sbjct: 156 QEHFSHLGYSSYPHGSLL------RATRVPGNGPLGEAE--DLLYPGGS-FDPLGLATDP 206
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN + +
Sbjct: 207 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 264
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 125/210 (59%), Gaps = 10/210 (4%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 151
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
+Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 152 VHAQSILAIWASQVILMGAVEGYRIGG----GPLGEVV--DPLYPGGS-FDPLGLADDPE 204
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFT 223
AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 205 AFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 117/188 (62%), Gaps = 8/188 (4%)
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP AF K E++H RWAMLGALG + PEVL EPVW++ G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 174
LDYLG P +L +Q ++ + Q ++M E R G++ + G+
Sbjct: 61 AQIFTEGGLDYLGNP--NLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVGE------GN 112
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 234
YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH
Sbjct: 113 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 172
Query: 235 ISDPLHNN 242
+ +P+ NN
Sbjct: 173 LDNPVANN 180
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/194 (50%), Positives = 119/194 (61%), Gaps = 16/194 (8%)
Query: 52 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 111
PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW+
Sbjct: 3 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-KFGEAVWF 61
Query: 112 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EALEPLG 168
+ G LDYLG P +L +Q ++ I CQ +LM E R G E L+PL
Sbjct: 62 KAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL- 118
Query: 169 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 228
YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP+
Sbjct: 119 --------YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 169
Query: 229 QNLLDHISDPLHNN 242
+NL DH++DP NN
Sbjct: 170 ENLYDHLADPTANN 183
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 120/218 (55%), Gaps = 36/218 (16%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G LPG LKVKEIK
Sbjct: 166 FQVVLMGLVEGYRING----------LPG------------------------LKVKEIK 191
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 192 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 229
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 120/218 (55%), Gaps = 36/218 (16%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 43 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 102
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G LPG LKVKEIK
Sbjct: 161 FQVVLMGLVEGYRING----------LPG------------------------LKVKEIK 186
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 187 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 224
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 121/192 (63%), Gaps = 10/192 (5%)
Query: 51 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 110
E PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVW 59
Query: 111 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIF 170
++ G LDYLG P L +Q ++ + Q +LM E R G PLG
Sbjct: 60 FKAGSQIFSEGGLDYLGNP--SLVHAQSILTVWATQVILMGAVEGYRIAG----GPLGEV 113
Query: 171 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
+ D YPGG+ FDPL L++ P AF ELKVKE+KNGRLAM + GF++QA TGKGP++N
Sbjct: 114 V--DPLYPGGS-FDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 170
Query: 231 LLDHISDPLHNN 242
L DH++DP++NN
Sbjct: 171 LADHLADPVNNN 182
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 134/234 (57%), Gaps = 23/234 (9%)
Query: 21 QARNESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
A N+ L WYG +R +L D P YL GE+ GDYG+D GL K P F KY
Sbjct: 56 SAANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQA 115
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHL 133
FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL Y G IP
Sbjct: 116 FELIHARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIP---- 171
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
+++ + + +L+ G E R E D +PGG FDPL+L+KDP
Sbjct: 172 ---INLVLAVVGEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLDLAKDPE 219
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 220 QGALLKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVI 273
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 126/222 (56%), Gaps = 13/222 (5%)
Query: 16 KALARQARNESLWYGEERPRWLGPI--PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K++A + +YG RP W GP P D P YL GE PGDYG D+ L + P + K
Sbjct: 1 KSVAPSQDTRTAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKL 60
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
+ E+++ RWAMLG G LVPE+++ EPVW++ G +DYLG+PG
Sbjct: 61 RSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFIN 119
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A S ++ + + QALLM E AR L P G D YPGG FDPL S DP
Sbjct: 120 AHS--LVAVIVVQALLMGVAEYARI----KLSPEG----NDAFYPGGKAFDPLGFSSDPE 169
Query: 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
+F ELKVKEIKNGRLAM+A G + Q A TG P+QNL D +
Sbjct: 170 SFAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 121/201 (60%), Gaps = 9/201 (4%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ERP WLGP PSYL G L GDYG+D +GLS P A + E+LHARWAMLGALG+
Sbjct: 24 ERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALGS 83
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L+PE+L L+EPVW++ G LDYLG P L +Q ++ I Q LLM
Sbjct: 84 LLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNP--SLVHAQSILAILGFQVLLMG 141
Query: 152 GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 211
E R G PLG GD YP GA FDPL S+DP + EL+ KEIKNGRLAM+
Sbjct: 142 LSEGYRLAG----GPLGEV--GDALYP-GASFDPLGFSEDPESLLELQTKEIKNGRLAML 194
Query: 212 AWLGFYIQAAFTGKGPVQNLL 232
A LG Y QA TGKGPV N L
Sbjct: 195 AMLGMYTQALVTGKGPVSNWL 215
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 124/205 (60%), Gaps = 10/205 (4%)
Query: 42 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL-DMV 100
+ +P TGE PGDYG+D AGLS DP F++Y E++HAR +LGALG + PE+L D
Sbjct: 70 HQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADED 129
Query: 101 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 160
G +W++ G + Q L+YLG P L A Q ++ Q +LM E R G
Sbjct: 130 GIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHA--QNIVATLAVQVVLMGLVEGYRVNG 187
Query: 161 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 220
A E L D YPG A FDPL L+ DP F ELKVKEIKNGRLAM A LGF++QA
Sbjct: 188 GPAGEGL------DPLYPGEA-FDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQA 240
Query: 221 AFTGKGPVQNLLDHISDPLHNNLLS 245
TGKGP++NL DH+++P NN +
Sbjct: 241 IVTGKGPIENLTDHLANPAENNAFA 265
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 123/221 (55%), Gaps = 37/221 (16%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 142 IAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
I CQ +LM E R G PLG +VK
Sbjct: 173 ILACQVILMGAIEGYRVAG----GPLG------------------------------EVK 198
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 199 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 239
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 117/193 (60%), Gaps = 11/193 (5%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + P++L G E +W++ G Q LDYLG L L +Q ++ CQ
Sbjct: 97 GALGCVTPKLLSKNGV-QFSEALWFKAGAQIFQEGGLDYLG--NLSLVHAQNIVATLACQ 153
Query: 147 ALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
+LM E R G A E L D YPG + FDPL L+ DP F ELKVKEIKNG
Sbjct: 154 VILMGLVEGYRVNGGPAGEGL------DPLYPGKS-FDPLGLADDPDTFAELKVKEIKNG 206
Query: 207 RLAMVAWLGFYIQ 219
RLAM + GF++Q
Sbjct: 207 RLAMFSMFGFFVQ 219
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 134/225 (59%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 67 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 126
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 127 MLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVVA 179
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 180 VVAEVVLLGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 230
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM A LGF+IQA TGKGPV+NL H+SDP NNLL+++
Sbjct: 231 IKNGRLAMFAMLGFFIQAYVTGKGPVENLAAHLSDPFGNNLLTVI 275
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 134/232 (57%), Gaps = 29/232 (12%)
Query: 30 GEERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
G+E +W GP +P + P YL GE+PGDYG+D GLSK P F KY +E+
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGS 136
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP------- 171
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
+IV + +L+ G E R LE D +PGG FDPL L+ DP
Sbjct: 172 INLIVAVAAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAA 222
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
LKVKEIKNGRLAM + LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 223 LLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 274
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 134/232 (57%), Gaps = 29/232 (12%)
Query: 30 GEERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
G+E +W GP +P + P YL GE+PGDYG+D GLSK P F KY +E+
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGS 136
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP------- 171
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFE 196
+IV + +L+ G E R LE D +PGG FDPL L+ DP
Sbjct: 172 INLIVAVAAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAA 222
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
LKVKEIKNGRLAM + LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 223 LLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 274
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 118/189 (62%), Gaps = 10/189 (5%)
Query: 54 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 113
GDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKA 59
Query: 114 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 173
G LDYLG P +L +Q ++ I CQ +LM E R G PLG L
Sbjct: 60 GAQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRVGG----GPLGEGL-- 111
Query: 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233
D YPGGA FDPL L+ DP ELKVKE+KNGRLAM + GF++QA TGKGP++NL D
Sbjct: 112 DKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFD 170
Query: 234 HISDPLHNN 242
H++DP+ NN
Sbjct: 171 HVADPVANN 179
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 141/247 (57%), Gaps = 29/247 (11%)
Query: 16 KALARQARNESLWYGEERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLS 64
KA A + G+E +W GP +P + P YL GE+PGDYG+D GLS
Sbjct: 45 KAKPATASSSGSDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLS 104
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
K+P F +Y +E++HARWAMLGA G ++PE + GA E VW++ G L+G TL+
Sbjct: 105 KNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLN 164
Query: 125 YLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
Y G IP + V + + +L+ G E R LE D +PGG
Sbjct: 165 YFGNSIP-------INLAVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP- 208
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DP LKVKEIKNGRLAM + LGF+IQA TG+GPV+NL H+SDP NN
Sbjct: 209 FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 268
Query: 243 LLSMVKS 249
LL+++ +
Sbjct: 269 LLTVISA 275
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 113/192 (58%), Gaps = 10/192 (5%)
Query: 22 ARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
A+ WYG R +WLGP PSYLTGE PGDYG+D AGLS DP F+KY E++H
Sbjct: 25 AKAADEWYGPNRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIH 84
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
AR+AMLGALG + PE+L G E VW+R G Q LDYLG P L A S G I
Sbjct: 85 ARFAMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAI 144
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200
VI+ Q +LM E R G A E L PG+ FDPL L+ DP F ELK+
Sbjct: 145 VIS--QVVLMGLVEGYRVNGGPAGEGLDSLYPGES-------FDPLGLADDPDTFAELKI 195
Query: 201 KEIKNGRLAMVA 212
KEIKNGRLAM +
Sbjct: 196 KEIKNGRLAMFS 207
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 133/230 (57%), Gaps = 29/230 (12%)
Query: 31 EERPRWLGP-----IPY------DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
EE +W GP +P D P YL GE+PGDYG+D GL + P F KY +E++
Sbjct: 79 EELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELI 138
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQ 137
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G IP
Sbjct: 139 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIP-------I 191
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
+I + + +L+ G E R + D +PGG FDPL L+KDP F
Sbjct: 192 NLIAAVVAEVVLVGGAEYYRATNGLNFD--------DKLHPGGP-FDPLGLAKDPDQFAL 242
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
LKVKEIKNGRLAM + LGF++QA TG+GPV+NL H+SDP NN+L+++
Sbjct: 243 LKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVL 292
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 134/245 (54%), Gaps = 21/245 (8%)
Query: 22 ARNESLWYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
A N WYG +R +L YD P+YL GEL GDYG+D GL KD KY +E+
Sbjct: 43 AVNLDKWYGPDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYEL 102
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
LHARWAML A G L+PE L GA ++ VW+ G L G TL+Y +P ++
Sbjct: 103 LHARWAMLAAAGILIPEGLQANGA-NIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLP 161
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPL 186
+ + + LM E R G P G + PG D YPGG FDPL
Sbjct: 162 LFAVIAIEVGLMGAVEFYRRNGTG---PAG-YSPGIGKFDSSVFEGLDSIYPGGP-FDPL 216
Query: 187 NLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSM 246
L+ DP F+ELKVKEIKNGRLAMV+ L F IQ+ TG+GP N + H+ DP NLL++
Sbjct: 217 GLADDPEVFQELKVKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTV 276
Query: 247 VKSMD 251
+ + D
Sbjct: 277 LGNED 281
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 139/247 (56%), Gaps = 29/247 (11%)
Query: 16 KALARQARNESLWYGEERPRWLGPIP-----------YDYPSYLTGELPGDYGFDVAGLS 64
KA A + G+E +W GP + P YL GE+PGDYG+D GLS
Sbjct: 45 KAKPATASSSGSDIGDELAKWYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLS 104
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
K+P F +Y +E++HARWAMLGA G ++PE + GA E VW++ G L+G TL+
Sbjct: 105 KNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLN 164
Query: 125 YLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
Y G IP I +A+ +V A Y I G+ L G + +PGG
Sbjct: 165 YFGNSIP----------INLAVAVVAEVVLVGGAEYYRIIN----GLDLEGKL-HPGGP- 208
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DP LKVKEIKNGRLAM LGF+IQA TG+GPV+NL H+SDP NN
Sbjct: 209 FDPLGLASDPDQAAPLKVKEIKNGRLAMFPMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 268
Query: 243 LLSMVKS 249
LL+++ +
Sbjct: 269 LLTVISA 275
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 125/218 (57%), Gaps = 15/218 (6%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
GE+RP W + P++LTGE PGD GFD GL+KDP F K+ + E+ H RWAMLG +
Sbjct: 148 GEKRPTWFPGA--EAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLV 205
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G LVPEV +G L P W+ + LDYLG P +L + V IA+ LL
Sbjct: 206 GCLVPEVFGNLGIAQL--PAWYDAA-TVANTSNLDYLGNP--NLVHASNVSFIALSTLLL 260
Query: 150 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 209
M E R+ G A E YPGG FDPL L P ELK+KEIKNGRLA
Sbjct: 261 MGPVEAWRWNGALASEAKSA---ERTTYPGGP-FDPLKLGASP----ELKLKEIKNGRLA 312
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
MV GF+ Q+ TG+GP+ NL H++DP HNNLL+ V
Sbjct: 313 MVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 350
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 125/218 (57%), Gaps = 15/218 (6%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
GE+RP W + P++LTGE PGD GFD GL+KDP F K + E+ H RWAMLG +
Sbjct: 357 GEKRPTWFPGA--EAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLV 414
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G LVPEV +G L P W+ G G +LDYLG P +L + V +I LL
Sbjct: 415 GCLVPEVFGNLGIAQL--PAWYEAGAVANTG-SLDYLGNP--NLVHASNVPLIFFTTLLL 469
Query: 150 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 209
+ E R+ G A E YPGG FDPL L P ELK+KEIKNGRLA
Sbjct: 470 FLPIEAWRWNGQIAPEAKSA---ERTTYPGGP-FDPLKLGASP----ELKLKEIKNGRLA 521
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
MV GF+ Q+ TG+GP+ NL H++DP HNNLL+ V
Sbjct: 522 MVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 559
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 94 PEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP 153
PEV +G L P W+ G G +LDYLG P +L + V +I LL +
Sbjct: 1 PEVFGNLGIAQL--PAWYEAGAVANTG-SLDYLGNP--NLVHASNVPLIFFTTLLLFLPI 55
Query: 154 ECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 213
E R+ G A + YPGG FDPL L P ELK+KEIKNGRLAMV
Sbjct: 56 EAWRWNGQIAPDAKSKEW---TTYPGGP-FDPLKLGASP----ELKLKEIKNGRLAMVGM 107
Query: 214 LGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
GF+ Q+ TG+GP+ NL H++DP HNNLL+ V
Sbjct: 108 FGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 141
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 121/191 (63%), Gaps = 11/191 (5%)
Query: 53 PGDYGFDVA-GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 111
PGDYG+D + GLS DP F K E++H+RWAMLGALG + PE+L G E VW+
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWF 59
Query: 112 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFL 171
+ G LDYLG P L +Q ++ I Q +LM E R G PLG +
Sbjct: 60 KAGAQIFSEGGLDYLGNP--SLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGEVV 113
Query: 172 PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
D YPGG+ FDPL L++DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL
Sbjct: 114 --DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 170
Query: 232 LDHISDPLHNN 242
DH++DP++NN
Sbjct: 171 ADHLADPVNNN 181
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 134/225 (59%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+PG+YG+D GLSK P F KY +E++HARWA
Sbjct: 68 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWA 127
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +I+
Sbjct: 128 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLILA 180
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 181 VVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAAILKVKE 231
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM + LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 232 IKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVI 276
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 130/224 (58%), Gaps = 17/224 (7%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 68 WYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWA 127
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G ++PE + GA E VW++ G L G TL+Y G S + +I
Sbjct: 128 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------NSIPINLILA 180
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
A +++ Y I L+ D +PGG FDPL L+ DP LKVKEIK
Sbjct: 181 VVAEVVLVGGAEYYRIINGLDLE------DKLHPGGP-FDPLGLASDPDQAALLKVKEIK 233
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
NGRLAM + LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 234 NGRLAMFSMLGFFIQAYVTGEGPVENLSAHLSDPFGNNLLTVIS 277
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 132/225 (58%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE L+ GA E VW++ G L G TL+Y G IP +++
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 174
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R E D +PGG FDPL L+KDP LKVKE
Sbjct: 175 VVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAKDPEQGALLKVKE 225
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM A LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 226 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 128/224 (57%), Gaps = 17/224 (7%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+PGDYG+D GL K P F KY FE++HARWA
Sbjct: 68 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 127
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G ++PE L+ GA E VW++ G L G TL+Y G S + +I
Sbjct: 128 MLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------NSIPINLILA 180
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
A +++ Y LE D +PGG FDPL L+ DP LKVKEIK
Sbjct: 181 VVAEVVLVGGAEYYRITNGLE------FDDKLHPGGP-FDPLGLATDPDQAALLKVKEIK 233
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
NGRLAM + LGF+IQA TG+GP +NL H+SDP NNLL+++
Sbjct: 234 NGRLAMFSMLGFFIQAYVTGEGPFENLCAHLSDPFGNNLLTVIS 277
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 132/225 (58%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE L+ GA E VW++ G L G TL+Y G IP +++
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 174
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R E D +PGG FDPL L+KDP LKVKE
Sbjct: 175 VVAEVVLLGGSEYYRITNGLDFE--------DKLHPGGP-FDPLGLAKDPEQGALLKVKE 225
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM A LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 226 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 132/225 (58%), Gaps = 21/225 (9%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE L+ GA E VW++ G L G TL+Y G IP +++
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 174
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R E D +PGG FDPL L+KDP LKVKE
Sbjct: 175 VVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAKDPEQGALLKVKE 225
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IKNGRLAM A LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 226 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 125/208 (60%), Gaps = 18/208 (8%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
+ P YL GE+PGDYG+D GLSK P F KY +E++HARWAMLGA G ++PE + GA
Sbjct: 22 EVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 81
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCG 160
E VW++ G L G TL+Y G IP +IV + +L+ G E R
Sbjct: 82 NCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLIVAVAAEVVLVGGAEYYRIIN 134
Query: 161 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 220
LE D +PGG FDPL L+ DP LKVKEIKNGRLAM + LGF+IQA
Sbjct: 135 GLDLE--------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 185
Query: 221 AFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG+GPV+NL H+SDP NNLL+++
Sbjct: 186 YVTGEGPVENLSKHLSDPFGNNLLTVIS 213
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 125/208 (60%), Gaps = 18/208 (8%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
+ P YL GE+PGDYG+D GLSK P F KY +E++HARWAMLGA G ++PE + GA
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCG 160
E VW++ G L G TL+Y G IP +IV + +L+ G E R
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLIVAVAAEVVLVGGAEYYRIIN 113
Query: 161 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 220
LE D +PGG FDPL L+ DP LKVKEIKNGRLAM + LGF+IQA
Sbjct: 114 GLDLE--------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 164
Query: 221 AFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG+GPV+NL H+SDP NNLL+++
Sbjct: 165 YVTGEGPVENLSKHLSDPFGNNLLTVIS 192
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 122/226 (53%), Gaps = 34/226 (15%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ LWYG +R ++LGP ++ P AF + E+
Sbjct: 39 GKYTMGNELWYGPDRVKYLGPFS----------------------AQTPFAFARNRALEV 76
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 77 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 134
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFE 196
++ + Q +LM E R G+ + GD N YPGG FDPL L+ DPV F
Sbjct: 135 ILAVLGFQVVLMGLVEGFRINGLPGV--------GDGNNLYPGGQYFDPLGLADDPVTFA 186
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 187 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 232
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 120/206 (58%), Gaps = 9/206 (4%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+L A + S K K+ A A N S WYG +R +WLGP+ P+YLTGELPGDYG+D
Sbjct: 126 LLPVSVATMATSGK-KSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDT 184
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGL DP+ +Y E++HARWAMLGALG + PE+L G VW++ G
Sbjct: 185 AGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSA 244
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
+ L+YLG P L A Q V++ + +M E RY G PLG L D YPGG
Sbjct: 245 DGLNYLGNPSLIHA--QSVVLTFLSTLAIMGAVEGYRYGG---GWPLGDDL--DRLYPGG 297
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNG 206
FDPL L+ DP AF ELKVKE+KNG
Sbjct: 298 P-FDPLGLANDPDAFAELKVKEVKNG 322
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 139/270 (51%), Gaps = 27/270 (10%)
Query: 6 KAALQDSSKFKALARQARNESLWYGEER-----PRWLGPI-----------PYDYPSYLT 49
K A + + + K A R + W+GE +W GP P D P+YL
Sbjct: 59 KTASKATKQVKKAASGKRTKG-WFGEAGGAQGLDKWYGPSRALFLPGGLLDPSDVPTYLN 117
Query: 50 GELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 109
G L GDYG+D GL KD +KY +E++HARWAML A G ++PE L GA +
Sbjct: 118 GTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQANGA-AIKGGT 176
Query: 110 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--EALEP- 166
W+ G L G TL+Y +P + + ++ + + L+ E R G P
Sbjct: 177 WFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVALLGAVERYRQSGEGPPGYSPG 236
Query: 167 -----LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 221
IF D YPGG FDPL L+ DP F ELKVKEIKNGRLA+++ LGF +Q+
Sbjct: 237 VGKFDSSIFSGLDNLYPGGP-FDPLGLADDPETFAELKVKEIKNGRLALISVLGFAVQSY 295
Query: 222 FTGKGPVQNLLDHISDPLHNNLLSMVKSMD 251
TG+GP N H++DP NLL+++ + D
Sbjct: 296 VTGEGPYANWSKHVADPFGYNLLTIIGAED 325
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 129/235 (54%), Gaps = 16/235 (6%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 74 FNFEILHAR---WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPG 130
+ W + + V + V+ ++ G LDYLG P
Sbjct: 96 VSLRSSTPDGPCWVPWD----VSSQSFCPVTVLNSVKLCGFKAGSQIFSEGGLDYLGNP- 150
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
L Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L++
Sbjct: 151 -SLGSRQSILAIWATQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAE 202
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH+SDP++NN S
Sbjct: 203 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 128/220 (58%), Gaps = 11/220 (5%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+ R ++LGP ++PSYLTGE PGDYG+D AGLS P F K E++H+R AM ALG
Sbjct: 56 DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALG 115
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+ PE+L ++G E VW++ G LDYLG P L A Q ++ I + +LM
Sbjct: 116 CIFPELLSVMGQ-GFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWTTKVILM 172
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
E R A PLG D YPG FD L L++D AF ELKVKE+KNGRLAM
Sbjct: 173 GAVEGYRI----ARGPLGEVT--DPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAM 224
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
+ GF++QA + K ++NL DH+ ++NN LS V +
Sbjct: 225 FSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNF 264
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 130/239 (54%), Gaps = 21/239 (8%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L YD P YL GEL GDYG+D GL KDP KY E+LHARWA
Sbjct: 52 WYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 111
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
ML A G L+PE L GA ++ W+ G L G TL+Y +P ++ + +
Sbjct: 112 MLAAAGILIPEGLQANGA-NIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIA 170
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPLNLSKDP 192
+ LM E R G P G + PG D YPGG FDPL L+ DP
Sbjct: 171 VEVGLMGAVEFYRRNGTG---PAG-YSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLADDP 225
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMD 251
+ELKVKEIKNGRLAMV+ LGF +Q+ TG+GP N H++DP NLL+++ + +
Sbjct: 226 EVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLGAEE 284
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 130/239 (54%), Gaps = 21/239 (8%)
Query: 28 WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG ER +L G + D P YL GEL GDYG+D GL KD +KY E+LHARWA
Sbjct: 46 WYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWA 105
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
ML A G L+PE L GA + W+ G L G TL+Y +P + + + +
Sbjct: 106 MLAAAGILIPEGLQANGA-DIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTL 164
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPLNLSKDP 192
+ +L+ E R ++ P G F PG D YPGG FDPLNL+ DP
Sbjct: 165 IEIVLLGAVEKFR---VDGTGPAG-FSPGVGKFDSDIFDGLDQLYPGGP-FDPLNLADDP 219
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMD 251
F EL+VKE KNGRLAMV L F IQ+ TG+GP N HISDP NLL++++ D
Sbjct: 220 EVFAELQVKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVLQGDD 278
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 24 NESLWYGEERPRWL--GPIPYDYPS-YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
N WYG +R +L G + D + L G LPGDYG+D GL+KD KY E+LH
Sbjct: 44 NLDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLH 103
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
ARWAML A GA++PE L GA + W+ G + L G TL++ +P +++ +
Sbjct: 104 ARWAMLAAAGAIIPEGLAANGA-DVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLF 162
Query: 141 VIAICQALLMVGPECARYCGIEALEPLGIFLPG------------DINYPGGALFDPLNL 188
V+ LM E R G E + PG D YPGG FDPL L
Sbjct: 163 VVVAANVALMGAAENYRRTG----EGPAGYSPGVGKFDESAYDSMDSLYPGGP-FDPLGL 217
Query: 189 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+ DP ELKVKEIKNGRLAMV++LGF +QAA TG+GP N H++DP NLL+++
Sbjct: 218 ADDPEVLAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTILA 277
Query: 249 SMD 251
D
Sbjct: 278 GED 280
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/184 (50%), Positives = 113/184 (61%), Gaps = 10/184 (5%)
Query: 59 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 118
D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIF 59
Query: 119 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 178
LDYLG P L A Q ++ I CQ +LM E R G PLG + D YP
Sbjct: 60 SEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYP 111
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GG+ FDPL L+ DP AF ELKVKEIKNG LAM + GF++QA TGKGP++NL DH++DP
Sbjct: 112 GGS-FDPLGLADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADP 170
Query: 239 LHNN 242
++NN
Sbjct: 171 VNNN 174
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 112/183 (61%), Gaps = 10/183 (5%)
Query: 60 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 119
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 2 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 60
Query: 120 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPG 179
LDYLG P L +Q ++ I CQ +LM E R G PLG D YPG
Sbjct: 61 EGGLDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--DPLYPG 112
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
G+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+
Sbjct: 113 GS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 171
Query: 240 HNN 242
+NN
Sbjct: 172 NNN 174
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 121/221 (54%), Gaps = 15/221 (6%)
Query: 16 KALARQARNESLWYGEERPRWLGPI--PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K++A + +YG RP W GP P D P YL GE PGDYG D+ L++ P + +
Sbjct: 13 KSVAPDQDARAPYYGPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARL 72
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E+++ RWAMLG G L PE+++ + EPVW+ G +DYLG+PG
Sbjct: 73 RTQELMNGRWAMLGITGCLTPELIN-SNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFIN 131
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGI-EALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
A S + + + QALLM E AR + E +P YPGG FDPL S DP
Sbjct: 132 AHS--LFAVIVVQALLMGLAEYARIKFVPEGADPF---------YPGGKTFDPLGFSSDP 180
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233
ELKVKEIKNGRLAM+A G + Q A TG P+QNL D
Sbjct: 181 EILAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHD 221
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 128/242 (52%), Gaps = 31/242 (12%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L YD P YL GEL GDYG+D GL KDP KY E+LHARWA
Sbjct: 22 WYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 81
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
ML A G L+PE L GA ++ W+ G L G TL+Y +P ++ + +
Sbjct: 82 MLAAAGILIPEGLQANGA-NIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIA 140
Query: 145 CQALLMVGPECARYCG-----------------IEALEPLGIFLPGDINYPGGALFDPLN 187
+ LM E R G + L+PL YPGG FDPL
Sbjct: 141 VEVGLMGAVEFYRRNGSGPAGYSPGIGKFDSSVFDGLDPL---------YPGGP-FDPLG 190
Query: 188 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
L+ DP +ELKVKEIKNGRLAMV+ LGF +Q+ TG+GP N H++DP NLL+++
Sbjct: 191 LADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL 250
Query: 248 KS 249
+
Sbjct: 251 GA 252
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/191 (48%), Positives = 112/191 (58%), Gaps = 10/191 (5%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 153
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
Q ++ I CQ +LM E R G PLG D YPGG+ FDPL L+ DP AF
Sbjct: 154 -QSILAIWACQVVLMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPKAF 205
Query: 196 EELKVKEIKNG 206
ELKVKEIKNG
Sbjct: 206 AELKVKEIKNG 216
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 111/185 (60%), Gaps = 10/185 (5%)
Query: 36 WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPE 95
+LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE
Sbjct: 1 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 60
Query: 96 VLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEC 155
+L G E VW++ G LDYLG P L A Q ++ I Q +LM E
Sbjct: 61 LLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAVQVVLMGAVEG 117
Query: 156 ARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 215
R G PLG D YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + G
Sbjct: 118 YRIAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 170
Query: 216 FYIQA 220
F++QA
Sbjct: 171 FFVQA 175
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 130/230 (56%), Gaps = 23/230 (10%)
Query: 28 WYGEERPRWLGPI----PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
WYG +RP++L P P D P+Y+ GEL GDYG+D GL + +KY +E+LH RW
Sbjct: 58 WYGPDRPKYL-PTGLLDPADIPAYMNGELAGDYGYDPLGLG-NKGGVEKYRPYEVLHGRW 115
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ-GETLDYLGIPG---LHLAGSQGV 139
AMLG +G LVPE L G ++ VWW G L TL + GIP L LA
Sbjct: 116 AMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALA----- 170
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
++ + L+ E RY + P G L D YPGG FDPL L+ DP +ELK
Sbjct: 171 VIFEVAVFFLI---ENYRY---QQDGPWGTGL--DPLYPGGKYFDPLGLASDPSKADELK 222
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
VKEIKNGRLAM+A+LGF +Q T +GP N H++DP N L+++ S
Sbjct: 223 VKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLTILGS 272
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 129/230 (56%), Gaps = 23/230 (10%)
Query: 28 WYGEERPRWLGPI----PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 83
WYG +RP++L P P D P+Y+ GEL GDYG+D GL +KY +E+LH RW
Sbjct: 65 WYGPDRPKYL-PTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRW 122
Query: 84 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ-GETLDYLGIPG---LHLAGSQGV 139
AMLG +G LVPE L G ++ VWW G L TL + GIP L LA
Sbjct: 123 AMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALA----- 177
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 199
++ + L+ E RY + P G L D YPGG FDPL L+ DP +ELK
Sbjct: 178 VIFEVAVFFLI---ENYRY---QQDGPWGTGL--DPLYPGGKYFDPLGLASDPSKADELK 229
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
VKEIKNGRLAM+A+LGF +Q T +GP N H++DP N L+++ S
Sbjct: 230 VKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLTILGS 279
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 28 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 87
+YG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 32 FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 91
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG + PE++ + EPVW++ G LDYLG P L A Q +I Q
Sbjct: 92 ALGCITPELI----GGDIAEPVWFKAGAQIFSEGGLDYLGNPSLVHA--QSIIATLAVQV 145
Query: 148 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
+LM E R G + P G D YPG A FDPL P F ELKVKEIKNGR
Sbjct: 146 ILMGQAEAFRAAGY--VVPGGFGEDLDNLYPGDA-FDPLAWLI-PDTFAELKVKEIKNGR 201
Query: 208 LA 209
LA
Sbjct: 202 LA 203
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 108/177 (61%), Gaps = 10/177 (5%)
Query: 66 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 125
D F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 1 DTETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDY 59
Query: 126 LGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
LG P L A Q ++ I CQ +LM E R G PLG D YPGG+ FDP
Sbjct: 60 LGNPSLIHA--QSILAIWACQVVLMGAVEGYRIAG----GPLGEIT--DPLYPGGS-FDP 110
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
L L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 111 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 167
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 104/171 (60%), Gaps = 10/171 (5%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPELLAKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLVHAQSILAIWA 161
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
CQ +LM E R G PLG L D YPGGA FDPL L++DP AF
Sbjct: 162 CQVVLMGAVEGYRVGG----GPLGEGL--DQLYPGGA-FDPLGLAEDPEAF 205
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 105/182 (57%), Gaps = 7/182 (3%)
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
AGLS DP F +Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 1 AGLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGAQIFQD 59
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
L+YLG L +Q ++ Q LLM E R G P G D YPGG
Sbjct: 60 GGLNYLGNE--SLVHAQSILATLAVQVLLMGAAESYRANGGA---PGGFGEDLDSLYPGG 114
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
A FDPL L+ DP ELKVKEIKNGRLAM + GF++QA TG+GP+ NL H+SDP
Sbjct: 115 A-FDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTG 173
Query: 241 NN 242
NN
Sbjct: 174 NN 175
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 132/232 (56%), Gaps = 36/232 (15%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
++RP WL + D P+YL G LPGD+GFD GL +DP + + Y E++H+R+AMLG LG
Sbjct: 56 QQRPTWLPGL--DPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLG 113
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LV ++L + G + P+W+ G K + A + ++V+ Q LLM
Sbjct: 114 ILVTDLLRVAGVNSI--PIWFEAGAVKYE-------------FANTGTLVVV---QLLLM 155
Query: 151 VGPECARYC-----GIEALE--------PLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
E RY G +A E LG PG YPGG L +PL L+KD + E
Sbjct: 156 GYAETRRYMDFVSPGSQAKEGSFFGLEASLGGLEPG---YPGGPLLNPLGLAKDIKSARE 212
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
K+KEIKNGRLAMVA LG ++QA+ T GP+ NL++H+S+P H ++ ++ S
Sbjct: 213 WKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQILAS 264
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 117/205 (57%), Gaps = 21/205 (10%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YLTGE+PGDYG+D GLSK P F+KY FE++HARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +++
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVLA 184
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R + D +PGG FDPL L+KDP LKVKE
Sbjct: 185 VVAEVILVGGAEYFRITNGLGFD--------DKLHPGGP-FDPLGLAKDPDQAALLKVKE 235
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGP 227
IKNGRLAM A LGF++QA TG P
Sbjct: 236 IKNGRLAMFAMLGFFLQAYVTGDVP 260
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 107/218 (49%), Gaps = 67/218 (30%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 69
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G+ + ++ I
Sbjct: 70 MLGALGCVFPEILSK-----------------------------NGVKFGEAVCILAIWA 100
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R ELKVKEIK
Sbjct: 101 CQVVLMGFVEGYRV--------------------------------------ELKVKEIK 122
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL+DH++DP+ NN
Sbjct: 123 NGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 160
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 123/230 (53%), Gaps = 30/230 (13%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
G +RP WL + D P +L G LPGD+GFD GL +DP + + Y E++H R+AM G
Sbjct: 56 GTQRPTWLPGL--DPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVA 113
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G L ++L + G L PVW+ G +K + A + + + Q LL
Sbjct: 114 GILFTDLLRVSGNSDL--PVWFEAGAAKFE-------------FANTTALFFV---QLLL 155
Query: 150 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 199
M E RY G +A E I L + YPGG LF+PL L+KD E K
Sbjct: 156 MGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEK 215
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+KEIKNGRLAMVA LGF +QA+ T GP+ NLL H+SDP + N++ S
Sbjct: 216 LKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHAFSS 265
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + D P YL G LPGDYGFD GL ++P + Y E++H R+AM G G
Sbjct: 51 ERATWLPGL--DPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGI 108
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L +++ + G +L PVW+ G +K L L L G + + + +V
Sbjct: 109 LGTDLIRVSGISNL--PVWFEAGATKFDFANTTALFFVQLLLMG-----FVETKRYMDIV 161
Query: 152 GP----ECARYCGIEA-LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
P E + GIEA LE L PG YPGG LF+P+ L+KD E+K+KEIKNG
Sbjct: 162 NPGSQAEEGTFLGIEASLEGL---QPG---YPGGPLFNPMGLAKDIKNAHEVKLKEIKNG 215
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
RLAMVA LGF++QA+ T GP+ NLL H+SDP +NN++ S
Sbjct: 216 RLAMVAMLGFFVQASVTHVGPIDNLLIHLSDPFNNNIIHAFTS 258
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 107/189 (56%), Gaps = 10/189 (5%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 22 KTVAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 81
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 82 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 140
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 193
A Q ++ I Q +LM E R G PLG + D YPGG+ FDPL L+ DP
Sbjct: 141 A--QSILAIWATQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPK 191
Query: 194 AFEELKVKE 202
AF ELKV E
Sbjct: 192 AFAELKVNE 200
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 122/238 (51%), Gaps = 48/238 (20%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
++RP WL + D P YL G L GDYGFD GL +DP + + Y E++HAR+AMLG
Sbjct: 57 AQQRPTWLPGL--DSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIA 114
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G L ++L + G L PVW+ G K + A ++ ++V+ Q L
Sbjct: 115 GILFTDLLRVTGIRKL--PVWYEAGAVKYE-------------FASTRTLLVV---QLLW 156
Query: 150 MVGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
M E RY +E LEP YPGG L +P L+K
Sbjct: 157 MGYAETRRYMDYVSPGSQNKEGSFFGMEAALEGLEP---------GYPGGPLLNPFGLAK 207
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
D + + K+KEIKNGRLAMVA LG ++QAA T GP+ NLL+H+SDP H ++ +
Sbjct: 208 DIRSARDWKLKEIKNGRLAMVAMLGIFVQAAVTHTGPIDNLLEHLSDPWHKTIIQTLS 265
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 107/175 (61%), Gaps = 10/175 (5%)
Query: 57 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 116
G+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQ 59
Query: 117 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN 176
LDYLG P +L +Q ++ I Q +LM E R G PLG L D
Sbjct: 60 IFSEGGLDYLGNP--NLIHAQSILAIWASQVVLMGLIEGYRVGG----GPLGEGL--DKV 111
Query: 177 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL
Sbjct: 112 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 165
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 123/238 (51%), Gaps = 48/238 (20%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+ RP WL + D P+YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 55 QPRPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFG 112
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LV ++L + G + PVW+ G K + +Q +I++ Q LLM
Sbjct: 113 ILVTDLLRVTGLSKI--PVWFEAGAVKYE-------------FTNTQTLIIV---QLLLM 154
Query: 151 VGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
E RY E LEP YPGG L +PL L+KD
Sbjct: 155 GFAETKRYMDFIGPGSQAKEGSFFGLEASFEGLEP---------GYPGGPLLNPLGLAKD 205
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
E K+KEIKNGRLAMVA LG ++QA+ T GP+ NL++H+S+P H ++ + S
Sbjct: 206 IKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLAS 263
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 123/238 (51%), Gaps = 48/238 (20%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+ RP WL + D P+YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 2 QPRPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFG 59
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LV ++L + G + PVW+ G K + +Q +I++ Q LLM
Sbjct: 60 ILVTDLLRVTGLSKI--PVWFEAGAVKYE-------------FTNTQTLIIV---QLLLM 101
Query: 151 VGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
E RY E LEP YPGG L +PL L+KD
Sbjct: 102 GFAETKRYMDFISPGSQAKEGSFFGLEASFEGLEP---------GYPGGPLLNPLGLAKD 152
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
E K+KEIKNGRLAMVA LG ++QA+ T GP+ NL++H+S+P H ++ + S
Sbjct: 153 IKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLAS 210
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 104/168 (61%), Gaps = 16/168 (9%)
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
++H+RWAMLGALG PE+L+ G E VW++ G LDYLG P +L +Q
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQ 57
Query: 138 GVIVIAICQALLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVA 194
++ I Q +LM E R G E L+PL YPGGA FDPL L+ DP A
Sbjct: 58 SILAIWATQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDA 107
Query: 195 FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
F ELKVKE+KNGRLAM + GF++QA TGKGPVQNL DH++DP+ NN
Sbjct: 108 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANN 155
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 16/224 (7%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
++RP WL + D P YL G L GD+GFD GL +DP + Y E++HAR+AM G G
Sbjct: 54 QQRPTWLPGL--DPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAG 111
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG---SQGVIVIAICQA 147
LV ++L + G +L PVW+ G K + + + L I L L G ++ + +
Sbjct: 112 ILVTDLLRVTGISNL--PVWYEAGAVKFEFASTEALFIVQLILMGFVETKRYMDFTNPGS 169
Query: 148 LLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
G +E LEP YPGG L +PL L++D + K+KEIKNGR
Sbjct: 170 QAKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLARDIKNAHDWKLKEIKNGR 220
Query: 208 LAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMD 251
LAMVA LG ++QA+ T GP++NL++H+S+P H ++ + S
Sbjct: 221 LAMVAMLGVFVQASVTHAGPIENLVEHLSNPWHKTIIQTISSTS 264
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 122/241 (50%), Gaps = 47/241 (19%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
++RP WL + D P YL G L GD+GFD GL +DP + + Y E++H+R+AM G
Sbjct: 61 AQQRPTWLPGL--DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVA 118
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G L ++L G +L PVW+ G +K Q + I Q LL
Sbjct: 119 GILFTDLLRTTGLSNL--PVWYEAGATKFQ----------------FANTTTLFIVQMLL 160
Query: 150 MVGPECARY------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
M E RY +E LEP YPGG + +PL ++KD
Sbjct: 161 MGFVETKRYMDFKNPGSQGEASFFGLEAALEGLEP---------GYPGGPILNPLGIAKD 211
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMD 251
E K+KEIKNGRLAMVA LG ++QA+ T GP++NL++H+SDP H ++ ++ + +
Sbjct: 212 IKNAPEWKLKEIKNGRLAMVAILGIFVQASVTHVGPLENLVEHLSDPWHTTIIQILSASN 271
Query: 252 D 252
Sbjct: 272 S 272
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 108/217 (49%), Gaps = 62/217 (28%)
Query: 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 17 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 76
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PE+L G E VW++ I C
Sbjct: 77 LGALGCVFPELLSRNGV-KFGEAVWFKA---------------------------AIWAC 108
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
Q +LM E R G PLG +VKEIKN
Sbjct: 109 QVILMGAVEGYRIGG----GPLG------------------------------EVKEIKN 134
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
GRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 135 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 171
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 134/258 (51%), Gaps = 39/258 (15%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 72 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 124
+ EI++ R+AMLGA+GA+ PE+L G + W+R G+ G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAG-TYN 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 170
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 171 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG GP QN
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQN 256
Query: 231 LLDHISDPLHNNLLSMVK 248
LLDH++DP+HNN+L+ +K
Sbjct: 257 LLDHLTDPVHNNILTSLK 274
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 125/229 (54%), Gaps = 35/229 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + D P YL G+L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--DPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGI 102
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 144
Query: 152 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 198
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYVDYVSPGSQAKE--GSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDW 202
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
K+KEIKNGRLAM+A LGF++QA+ T GP+ NL++H+S+P H ++ +
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 114/204 (55%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G PGD+GFD GL + P +++ E++H RWAML G L+PE L G +
Sbjct: 58 PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEAL---GLGN 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
VE W + G YLG P G + + I + + +R G+ +
Sbjct: 115 WVEAQQW----AATPGGQATYLGTPV-----PWGTLPVIIAIEFVAIAFVESRRIGVPSA 165
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ-AAFT 223
E YPGGA FDPL SKDP FEE K+KE+KNGRLA++A+LGF Q AA+
Sbjct: 166 E--------KRKYPGGA-FDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAAYP 216
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP+QNL H++DP HNN+ +++
Sbjct: 217 GTGPLQNLATHLADPWHNNIANII 240
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 119/230 (51%), Gaps = 30/230 (13%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 59 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 116
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G L ++L + G L PVW+ G +K D+ + Q L
Sbjct: 117 GILFTDLLRVSGNSDL--PVWFEAGAAKF-----DF-----------ANTTALFFVQLFL 158
Query: 150 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 199
M E RY G +A E I L + YPGG LF+PL L+KD + K
Sbjct: 159 MGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEK 218
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+KEIKNGRLAMVA LGF +QA+ T GP+ NLL H+SDP + N++ S
Sbjct: 219 LKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSS 268
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 123/233 (52%), Gaps = 40/233 (17%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + D P +L G LPGD+GFD GL ++P + Y E++H R+AM G G
Sbjct: 53 ERATWLPGL--DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGI 110
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L +++ + G +L PVW+ G +K D+ L Q LLM
Sbjct: 111 LATDLIRVSGINNL--PVWFEAGATKF-----DFANTTALFF-----------VQLLLMG 152
Query: 152 GPECARYC-----GIEALEPLGIFL----------PGDINYPGGALFDPLNLSKDPVAFE 196
E RY G +A E G FL PG YPGG LF+PL L+KD +
Sbjct: 153 FAETKRYMDFINPGSQAEE--GTFLGIEAALAGSQPG---YPGGPLFNPLGLAKDIENAD 207
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
E K+KEIKNGRLAMVA LGF +QA+ T GP+ NLL H+SDP + N++ + S
Sbjct: 208 EAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLSS 260
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 119/230 (51%), Gaps = 30/230 (13%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 59 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 116
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G L ++L + G L PVW+ G +K D+ + Q L
Sbjct: 117 GILFTDLLRVSGNSDL--PVWFEAGAAKF-----DF-----------ANTTALFFVQLFL 158
Query: 150 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 199
M E RY G +A E I L + YPGG LF+PL L+KD + K
Sbjct: 159 MGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEK 218
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+KEIKNGRLAMVA LGF +QA+ T GP+ NLL H+SDP + N++ S
Sbjct: 219 LKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSS 268
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 119/230 (51%), Gaps = 30/230 (13%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 105 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 162
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G L ++L + G L PVW+ G +K D+ + Q L
Sbjct: 163 GILFTDLLRVSGNSDL--PVWFEAGAAKF-----DF-----------ANTTALFFVQLFL 204
Query: 150 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 199
M E RY G +A E I L + YPGG LF+PL L+KD + K
Sbjct: 205 MGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEK 264
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+KEIKNGRLAMVA LGF +QA+ T GP+ NLL H+SDP + N++ S
Sbjct: 265 LKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSS 314
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 120/221 (54%), Gaps = 16/221 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP WL G P P++L G L GD+GFD GL +DP + Y E++H+R+AM G G
Sbjct: 1 ERPLWLPGTTP---PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAG 57
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L ++L G + PVW+ G +K L + L L G + ++
Sbjct: 58 ILFTDLLRASGRTDI--PVWFEAGATKFDFADTTTLFVVQLIL---MGFVETKRWMDIVK 112
Query: 151 VGPECAR--YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
G + A + G EA F + YPGG LF+PL + DP + L+ KEIKNGRL
Sbjct: 113 PGSQAAEDSFFGFEA-----AFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRL 167
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
AMVA +GF +QA T GP++NLL H+SDP+HN ++ + +
Sbjct: 168 AMVAMVGFMVQAYVTKTGPIENLLTHLSDPVHNTIIQRIAN 208
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 122/233 (52%), Gaps = 40/233 (17%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + D P +L G LPGD+GFD GL ++P + Y E++H R+AM G G
Sbjct: 53 ERATWLPGL--DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGI 110
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L + + + G +L PVW+ G +K D+ L Q LLM
Sbjct: 111 LATDFIRVSGINNL--PVWFEAGATKF-----DFANTTALFF-----------VQLLLMG 152
Query: 152 GPECARYC-----GIEALEPLGIFL----------PGDINYPGGALFDPLNLSKDPVAFE 196
E RY G +A E G FL PG YPGG LF+PL L+KD +
Sbjct: 153 FAETKRYMDFINPGSQAEE--GTFLGIEAALAGSQPG---YPGGPLFNPLGLAKDIENAD 207
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
E K+KEIKNGRLAMVA LGF +QA+ T GP+ NLL H+SDP + N++ + S
Sbjct: 208 EAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLSS 260
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 133/258 (51%), Gaps = 39/258 (15%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 72 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 124
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 170
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 171 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG GP QN
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQN 256
Query: 231 LLDHISDPLHNNLLSMVK 248
LLDH++DP+HNN+L+ +K
Sbjct: 257 LLDHLTDPVHNNILTSLK 274
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 121/218 (55%), Gaps = 20/218 (9%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + D P+YL G LPGDYGFD GL + P + Y E++H R+AM G G
Sbjct: 49 ERATWLPGL--DPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGI 106
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L +++ + G +L PVW+ G +K L L L G + + + V
Sbjct: 107 LGTDLIRVSGIGNL--PVWFEAGATKFDFANTTALFFVQLLLMG-----FVETKRYMDFV 159
Query: 152 GPEC----ARYCGIEA-LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNG 206
P + GIEA LE L PG YPGG LF+P+ L+KD E+K+KEIKNG
Sbjct: 160 SPGSQAKEGTFLGIEASLEGL---QPG---YPGGPLFNPMGLAKDIENANEVKLKEIKNG 213
Query: 207 RLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
RLAMVA LGF +QA+ T GP+ NLL H+SDP + N++
Sbjct: 214 RLAMVAMLGFIVQASVTHAGPIDNLLTHLSDPFNKNII 251
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 133/258 (51%), Gaps = 39/258 (15%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 72 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 124
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 170
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 171 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG GP QN
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQN 256
Query: 231 LLDHISDPLHNNLLSMVK 248
LLDH++DP+HNN+L+ +K
Sbjct: 257 LLDHLADPVHNNILTSLK 274
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 138/266 (51%), Gaps = 45/266 (16%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
++K + ++ A+Q + LW+ ++ SYL G LPGDYGFD G
Sbjct: 32 SSRKVSFAVRAEATPPAKQGADRQLWFASKQSL----------SYLDGSLPGDYGFDPLG 81
Query: 63 LSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWR 112
LS DP + EI++ R+AMLGA+GA+ PE+L G L+ P W++
Sbjct: 82 LS-DPEGTGGFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAG---LIPPETALPWFK 137
Query: 113 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--IF 170
G G T DY P + + + LM E R+ + L F
Sbjct: 138 TGVIPPAG-TYDYWADP----------YTLFVFELALMGFAEHRRFQDFQKPGCLSKQYF 186
Query: 171 L--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
L G+ YPGG LF+PL KD + ++LK+KE+KNGRLAM+A LG+++QA
Sbjct: 187 LGFEKYFEGSGNPIYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALV 246
Query: 223 TGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH+SDP++NN+L+ +K
Sbjct: 247 TGVGPYQNLLDHLSDPVNNNILTSLK 272
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 133/258 (51%), Gaps = 39/258 (15%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 72 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 124
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 170
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 171 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG+++QA TG GP QN
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQN 256
Query: 231 LLDHISDPLHNNLLSMVK 248
LLDH++DP+HNN+L+ +K
Sbjct: 257 LLDHLADPVHNNILTSLK 274
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 37 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 94
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 95 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 136
Query: 152 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 198
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 137 FAETKRYMDFVSPGSQAKE--GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDW 194
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
K+KEIKNGRLAM+A LGF++QA+ T GP+ NL++H+S+P H ++ +
Sbjct: 195 KLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 243
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 123/240 (51%), Gaps = 48/240 (20%)
Query: 29 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
+ ++RP WL + D P YL G L GD+GFD GL +DP + + Y E++HAR+AM G
Sbjct: 53 HAQQRPTWLPGL--DPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGV 110
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G L ++L + G L PVW+ G K + A ++ +IV+ Q L
Sbjct: 111 AGILFTDLLRVTGIRKL--PVWYEAGAVKFE-------------FASTRTLIVV---QLL 152
Query: 149 LMVGPECARY-------------------CGIEALEPLGIFLPGDINYPGGALFDPLNLS 189
LM E RY +E LEP YPGG L +PL L+
Sbjct: 153 LMGFAETKRYMDFVSPGSQAKEGSFFGLESALEGLEP---------GYPGGPLLNPLGLA 203
Query: 190 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+D K+KEIKNGRLAMVA +G ++QAA T GP+ NL++H+S+P H ++ + +
Sbjct: 204 RDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAGPIDNLIEHLSNPWHRTIIQTLAN 263
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 144
Query: 152 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 198
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYMDFVSPGSQAKE--GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDW 202
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
K+KEIKNGRLAM+A LGF++QA+ T GP+ NL++H+S+P H ++ +
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FASTKTLIVV---QFLLMG 144
Query: 152 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 198
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYMDFVSPGSQAKE--GSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDW 202
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
K+KEIKNGRLAM+A LGF++QA+ T GP+ NL++H+S+P H ++ +
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHXTIIQTL 251
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G +P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 56 DRPIWFPGSVP---PPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAG 112
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T I + + ++G I +
Sbjct: 113 IFIPEFLTKIGI--LSTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK---- 166
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 167 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLA 221
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
M+A +G + QA +TG GP+ NL H++DP H N+
Sbjct: 222 MLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIF 256
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 8/172 (4%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
+ + Q +LM E R G++ + G+ YPGG FDPL L+ D
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADD 202
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L ++L G +L PVW+ G K A ++ +IV+ Q LLM
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD-------------FACTKTLIVV---QFLLMG 144
Query: 152 GPECARYC-----GIEALEPLGIFLPG--------DINYPGGALFDPLNLSKDPVAFEEL 198
E RY G +A E G F G + YPGG L +PL L+KD +
Sbjct: 145 FAETKRYMDFVSPGSQAKE--GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDW 202
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
K+KEIKNGRLAM+A LGF++QA+ T GP+ NL++H+S+P H ++ +
Sbjct: 203 KLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 118/233 (50%), Gaps = 38/233 (16%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML A
Sbjct: 56 GPDRPLWFPGSSP---PPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAA 112
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G LVPEVL+ G YS + DY P + + Q
Sbjct: 113 AGILVPEVLEKWGFME---------DYSWIDAGARDYFADP----------WTLFVSQMA 153
Query: 149 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 196
LM E R+ G A+EP LP D+ YPGG FD N + P
Sbjct: 154 LMGWAEGRRWADYLNPGCVAVEPR---LPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVM 210
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
L+ KEIKNGRLAM+A++GF+ QA +TG+GP+ NLL H++DP H N+ S S
Sbjct: 211 VLRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 126/252 (50%), Gaps = 29/252 (11%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
ML+T+ + S+ A R R+ + E RP W+ PS+L G LPGDYGFD
Sbjct: 4 MLKTQFGTQRISTHISATKRTVRSSVIASAESRPLWMPGTAA--PSHLKGMLPGDYGFDP 61
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
L +D Y E+ HARWAMLG G PE+L M G L P W +
Sbjct: 62 LNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSDL--PNWHDAPF----- 114
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-----ALEPL--GIFLP- 172
Y G + A S + + Q +M E R+ I+ + +P G LP
Sbjct: 115 ----YNG----YFASSTTLFTV---QMFMMNWAEIRRWQDIKNPGSVSEDPAFPGNKLPA 163
Query: 173 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
GD+ YPGG +F+P+N K + LK KEI NGRLAMVA LG +IQ TG GPV+NL
Sbjct: 164 GDVGYPGG-IFNPMNYGKSTDELKALKAKEIANGRLAMVAALGCFIQYDHTGVGPVENLT 222
Query: 233 DHISDPLHNNLL 244
H+S+P NN+
Sbjct: 223 SHLSNPGVNNVF 234
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG 59
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 174
LDYLG P L +Q ++ I CQ +LM E R G PLG + D
Sbjct: 60 SQIFSEGGLDYLGNP--SLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGEVV--D 111
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 220
YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA
Sbjct: 112 PLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQA 156
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 97/164 (59%), Gaps = 8/164 (4%)
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP AF + E++H RWAMLGALG + PEVL EPVW++ G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 174
LDYLG P +L +Q ++ + Q +LM E R G++ + G+
Sbjct: 61 AQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG------EGN 112
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 218
YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++
Sbjct: 113 DLYPGGQYFDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 136/266 (51%), Gaps = 47/266 (17%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 63
T+KA+ + +Q N LW+ ++ SYL G LPGD+GFD GL
Sbjct: 32 TRKASFVVRAASTPPVKQGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGL 81
Query: 64 SKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYS 116
S DP + E+++ R+AMLGA GA+ PE+L G W++ G
Sbjct: 82 S-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVI 140
Query: 117 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIE 162
G T +Y A + + V+ + LM E R+ G+E
Sbjct: 141 PPAG-TYNYW-------ADNYTLFVLEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLE 189
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
G+ GD YPGG LF+PL KD + +ELK+KEIKNGRLAM+A LG++IQA
Sbjct: 190 K----GLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALV 245
Query: 223 TGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 246 TGVGPYQNLLDHLADPVNNNVLTSLK 271
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
+ + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 42 GKYTMSNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 101
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWA+LGALG + PEVL EPVW++ G LDYLG P +L +Q
Sbjct: 102 IHGRWALLGALGCITPEVLGKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 159
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAF 195
++ + Q +LM E R G++ + G+ YP G FDPL L+ DP F
Sbjct: 160 ILAVLGFQVVLMGLAEGFRINGLDGVG------EGNNLYPXGQYFDPLGLADDPTTF 210
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 136/266 (51%), Gaps = 47/266 (17%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 63
T+KA+ + +Q N LW+ ++ SYL G LPGD+GFD GL
Sbjct: 32 TRKASFVVRAASTPPVKQGANRQLWFASKQSL----------SYLDGRLPGDFGFDPLGL 81
Query: 64 SKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYS 116
S DP + E+++ R+AMLGA GA+ PE+L G W++ G
Sbjct: 82 S-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVI 140
Query: 117 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIE 162
G T +Y A + + V+ + LM E R+ G+E
Sbjct: 141 PPAG-TYNYW-------ADNYTLFVLEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLE 189
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
G+ GD YPGG LF+PL KD + +ELK+KEIKNGRLAM+A LG++IQA
Sbjct: 190 K----GLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALV 245
Query: 223 TGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 246 TGVGPYQNLLDHLADPVNNNVLTSLK 271
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 130/249 (52%), Gaps = 45/249 (18%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN---- 75
+Q + LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 48 KQGADRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWL 96
Query: 76 --FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGIP 129
E+++ R+AMLGA GA+ PE+ G+ L+ P W++ G G T +Y P
Sbjct: 97 AYGEVINGRFAMLGAAGAIAPEIF---GSLGLIPPETALPWFKTGVIPPAG-TYNYWADP 152
Query: 130 GLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEALEPLGIFL--PGDINYPG 179
+ + + LM E R+ G + L FL GD YPG
Sbjct: 153 ----------YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPG 202
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
G LF+PL KD + +ELK+KEIKNGRLAM+A LG++IQ TG GP QNLLDH+SDP+
Sbjct: 203 GPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPV 262
Query: 240 HNNLLSMVK 248
+NN+L+ +K
Sbjct: 263 NNNVLTSLK 271
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 118/228 (51%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + E++HARWAMLG G
Sbjct: 53 DRPLWFPGSSP---PEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE+L+ +G YS + T +Y P + I Q LM
Sbjct: 110 ILIPELLEKMGYVE---------NYSWYEAGTQEYFADP----------TTLFIVQLALM 150
Query: 151 VGPECARYC-----GIEALEPLGIFLPG---DINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ G +EP P D+ YPGG FDP+ + P L+ K
Sbjct: 151 GWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 210
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A++GF+ QA +TG+GP++NL+ H++DP H N+ S S
Sbjct: 211 EIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 133/258 (51%), Gaps = 39/258 (15%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAAIPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 72 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLD 124
+ EI++ R+AMLGA+GA+ PE+L G + W+R G G T +
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYN 150
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------------CGIEALEPLGIF 170
Y A S + V + LM E R+ G+E G+
Sbjct: 151 YW-------ADSYTLFVFEMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEK----GLG 196
Query: 171 LPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
G+ YPGG F+PL KD + ++LK+KE+KNGRLAM+A LG++++A TG GP QN
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVRALVTGVGPYQN 256
Query: 231 LLDHISDPLHNNLLSMVK 248
LLDH++DP+HNN+L+ +K
Sbjct: 257 LLDHLADPVHNNILTSLK 274
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 99/161 (61%), Gaps = 16/161 (9%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 1 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 57
Query: 145 CQALLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
CQ +LM E R G E L+PL YPGGA FDPLNL++DP AF ELKVK
Sbjct: 58 CQVVLMGFIEGYRIGGGPLGEGLDPL---------YPGGA-FDPLNLAEDPEAFSELKVK 107
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
E+KNGRLAM + GF++QA TGKGP++NL DHI+DP+ NN
Sbjct: 108 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 148
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 120/209 (57%), Gaps = 14/209 (6%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL +LPG YGFD L +DP + + Y E++H+R+AM G L+PEVL GA +
Sbjct: 45 PAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVLKAFGAVN 103
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP--ECARYCGIE 162
L PVW+ G + + + + L + + I Q G E + G+E
Sbjct: 104 L--PVWYEAGKYAQESSPIPFNTLIALEIFAFN-FVEIKRWQDFKKPGSQGEEGSFVGLE 160
Query: 163 ALEPLGIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 221
G F G+ YPGG +FDPL LSK P +E +K++EIKNGRLAM+A++GF Q
Sbjct: 161 -----GFFKGTGENGYPGG-VFDPLGLSKGP-GYEAMKLREIKNGRLAMLAFIGFASQYL 213
Query: 222 FTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
TGKGP++NLLDH+S+PL NN + S+
Sbjct: 214 ATGKGPIENLLDHLSNPLANNFTTNGTSL 242
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 137/259 (52%), Gaps = 39/259 (15%)
Query: 10 QDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA 69
+ SS F + R A + G +RP W +YL G LPGDYGFD GLS DP
Sbjct: 32 RKSSSF--VVRAASTPPVKQGADRPLWFAS--KQSLTYLDGSLPGDYGFDPLGLS-DPEG 86
Query: 70 FQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VWWRVGYSKLQ 119
+ E+++ R+AMLGA+GA+ PE+L +G L+ P W++ G
Sbjct: 87 TGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLG---LIPPETALPWFKTGVFPPA 143
Query: 120 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEALEPLGIFL 171
G T +Y P + + + LM E R+ G + L +L
Sbjct: 144 G-TYNYWADP----------YTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKYL 192
Query: 172 --PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
GD YPGG LF+PL KD + ++LK+KE+KNGRLAM+A LG++ Q TG GP+Q
Sbjct: 193 GGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQ 252
Query: 230 NLLDHISDPLHNNLLSMVK 248
NLLDH++DP++NN+++ +K
Sbjct: 253 NLLDHLADPVNNNIITSLK 271
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 117/229 (51%), Gaps = 16/229 (6%)
Query: 19 ARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
AR A + +RP W G P P +L G LPGD+GFD GL+ DP + + E
Sbjct: 51 ARSATTVCVAADPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAE 107
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
++H RWAMLGA G +PE+L +G L P W+ G + +T + + + ++
Sbjct: 108 LVHCRWAMLGAAGIFIPELLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAE 165
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFE 196
G I + P C + + P D+ YPGG FDPL S P +
Sbjct: 166 GRRWADIIK------PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIK 216
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
EL+ KEIKNGRLAM+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 217 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 265
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 120/219 (54%), Gaps = 27/219 (12%)
Query: 46 SYLTGELPGDYGFDVAGL--SKDPMAFQK---YFNFEILHARWAMLGALGALVPEVLDMV 100
SYL G LPGDYGFD GL + P F + EI++ R+AMLGA+GA+ PE+L +
Sbjct: 77 SYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKL 136
Query: 101 GAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY- 158
G + W++ G G T +Y P + + + LM E R
Sbjct: 137 GLIPQETALPWFQTGVIPPAG-TYNYWADP----------FTLFVLEMALMGFAEHRRLQ 185
Query: 159 -------CGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 209
G + L FL G N YPGG LF+PL KD + +ELK+KE+KNGRLA
Sbjct: 186 DYRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLA 245
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
M+A LG++IQ TG GP QNLLDH++DP+HNN L+ +K
Sbjct: 246 MLAILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLTNMK 284
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 131/254 (51%), Gaps = 34/254 (13%)
Query: 6 KAALQDSSKFKALARQARNES------LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 59
++A S LAR+ R S + E + WL + PSYL G LPGD GFD
Sbjct: 19 RSAFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGL--SSPSYLNGSLPGDNGFD 76
Query: 60 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 119
GL++DP + + Y E+++ RWAMLG G L+PEVL +G ++ P W+ G +
Sbjct: 77 PLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINV--PKWYDAGKVE-- 132
Query: 120 GETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIEALEPLG---IFLPGD 174
+ A S + VI + + + + +Y G +PL P +
Sbjct: 133 ------------YFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNE 180
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 234
+ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q TGKGP NLL H
Sbjct: 181 VGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQH 235
Query: 235 ISDPLHNNLLSMVK 248
+SDP HN ++ ++
Sbjct: 236 LSDPWHNTIIQTLQ 249
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 117/233 (50%), Gaps = 38/233 (16%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML
Sbjct: 56 GPDRPLWFPGSSP---PPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAV 112
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G LVPEVL+ G YS + DY P + + Q
Sbjct: 113 AGILVPEVLEKWGFME---------DYSWIDAGARDYFADP----------WTLFVSQMA 153
Query: 149 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 196
LM E R+ G A+EP LP D+ YPGG FD N + P
Sbjct: 154 LMGWAEGRRWADYLNPGCVAVEPR---LPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVM 210
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
L+ KEIKNGRLAM+A++GF+ QA +TG+GP+ NLL H++DP H N+ S S
Sbjct: 211 VLRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 130/249 (52%), Gaps = 45/249 (18%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN---- 75
+Q + LW+ ++ +YL G LPGD+GFD GLS DP +
Sbjct: 48 KQGADRQLWFASKQSL----------TYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWL 96
Query: 76 --FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGIP 129
EI++ R+AMLGA GA+ PE+L G L+ P W++ G G T DY P
Sbjct: 97 AYGEIINGRFAMLGAAGAIAPEILGKAG---LIPPETALPWFQTGVIPPAG-TYDYWADP 152
Query: 130 GLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEALEPLGIFL--PGDINYPG 179
+ + + LM E R+ G + L FL GD YPG
Sbjct: 153 ----------YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPG 202
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
G LF+PL KD + +ELK+KE+KNGRLAM+A LG+++Q TG GP QNLLDH++DP+
Sbjct: 203 GPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 262
Query: 240 HNNLLSMVK 248
+NN+L+ +K
Sbjct: 263 NNNVLTSLK 271
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 115/228 (50%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + + E++H RWAML A G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE L+ +G ++ T +Y P + + Q +LM
Sbjct: 112 ILIPEWLERLGFID---------NFNWFDAGTREYFADP----------TTLFVVQLILM 152
Query: 151 VGPECARYCG--------IEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ I+ P DI YPGG FDP N + P ++ K
Sbjct: 153 GWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A++GF+ QA +TG+GP+ NL+ HI+DP H N+ S S
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTS 260
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 117/212 (55%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G LPGD GFD GL++DP + Y E++++RWAMLG G L+PEV +G +
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 123 --APQWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKNYSLPPNEVGYPGG-IFNPLNFAPT----EEAKEKELANGRLAMLAFLGF 218
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP NLL HISDP HN ++ ++
Sbjct: 219 IVQHNVTGKGPFDNLLQHISDPWHNTIIQTLR 250
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T I + + ++G I +
Sbjct: 121 IFIPEFLTKIGV--LNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIK---- 174
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 229
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 230 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 265
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 123/227 (54%), Gaps = 26/227 (11%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
++RP WL + D P +L G L GD+GFD GL++DP + + Y E++H R+AMLG G
Sbjct: 52 QQRPTWLPGL--DPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFG 109
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LV ++L + G + PVW+ G K L + L L G + + +
Sbjct: 110 ILVTDLLRVTGISKI--PVWFEAGAVKYDFANTKTLFLVQLVLMG-----FVETKRYMDF 162
Query: 151 VGPEC----ARYCGIEA----LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
V P + G+EA LEP YPGG L +PL L+KD + K+KE
Sbjct: 163 VSPGSQAKEGSFFGLEASLKGLEP---------GYPGGPLLNPLGLAKDINNAHDWKLKE 213
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
IKNGRLAMVA LG ++QA+ T GP+ NL++H+S+P H ++ + +
Sbjct: 214 IKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLAN 260
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 45/245 (18%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FE 77
N LW+ ++ SYL G LPGD+GFD GLS DP + E
Sbjct: 53 NRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGE 101
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGIPGLHL 133
I++ R+AMLGA+GA+ PE+L G L+ P W+R G G T Y P
Sbjct: 102 IINGRYAMLGAVGAIAPEILGKAG---LIPPETALPWFRTGVIPPAG-TYSYWADP---- 153
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--IFL--------PGDINYPGGALF 183
+ + + LM E R+ +G FL G+ YPGG LF
Sbjct: 154 ------YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLF 207
Query: 184 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
+PL KD + ++LK+KE+KNGRLAM+A LG+++Q TG GP QNLLDH++DP+HNN+
Sbjct: 208 NPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNI 267
Query: 244 LSMVK 248
L+ +K
Sbjct: 268 LTSLK 272
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQ 111
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ G YLG P + I + + + + E R +
Sbjct: 112 AQE-------WAAEPGGQATYLGNP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 158
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDPV FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 159 -------PEKKKYPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H+SDP HNN+ ++
Sbjct: 211 GTGPLENLASHLSDPWHNNIGDII 234
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 117/212 (55%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G LPGD GFD GL++DP + Y E++++RWAMLG G L+PEV +G +
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 120 --APQWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 160
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF
Sbjct: 161 GSVNQDPIFKNYSLPPNEVGYPGG-IFNPLNFAPT----EEAKEKELANGRLAMLAFLGF 215
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP NLL HISDP HN ++ ++
Sbjct: 216 IVQHNVTGKGPFDNLLQHISDPWHNTIIQTLR 247
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 115 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 167
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 168 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +V
Sbjct: 214 GTGPLENLATHLADPWHNNIGDIV 237
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 119/229 (51%), Gaps = 32/229 (13%)
Query: 31 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
+ERP WL G P P +L G L GD+GFD L KDP + Y E++H+R+AM G
Sbjct: 41 DERPIWLPGLSP---PQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIA 97
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G LV ++L VG L PVW+ G ++ + A ++ + V+ Q +L
Sbjct: 98 GILVTDLLRTVGGRDL--PVWYEAGATEFE-------------FADTRTLFVV---QLIL 139
Query: 150 MVGPECARYC-----GIEALEPLGIFLPGDI-----NYPGGALFDPLNLSKDPVAFEELK 199
M E RY G +A + + + YPGG FDP L +D LK
Sbjct: 140 MGYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDINNARTLK 199
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
KE+KNGRLAMVA LG ++QA FT GP+ NLL H+SDP HN ++ +
Sbjct: 200 EKELKNGRLAMVAILGVFVQAFFTKTGPIDNLLTHVSDPWHNTIVQTLS 248
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 115/228 (50%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + + E++H RWAML A G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE L+ +G ++ T +Y P + + Q +LM
Sbjct: 112 ILIPEWLERLGFID---------NFNWFDAGTREYFADP----------TTLFVVQLILM 152
Query: 151 VGPECARYCG--------IEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ I+ P D+ YPGG FDP N + P ++ K
Sbjct: 153 GWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A++GF+ QA +TG+GP+ NL+ HI+DP H N+ S S
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTS 260
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 52 ERPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 108
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE+L +G L P W+ G +T + + + ++G I +
Sbjct: 109 IFIPELLTKIGI--LNTPSWYTAGEQTYFADTTTLFIVELILIGWAEGRRWADIIK---- 162
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 163 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLA 217
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
M+A +G + QA +TG GP+ NL H++DP H +
Sbjct: 218 MLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIF 252
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 134/266 (50%), Gaps = 45/266 (16%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
++KA+ + +Q + LW+ ++ SYL G LPGD+GFD G
Sbjct: 33 SSRKASFVVKAASTPPVKQGADRQLWFASKQSL----------SYLDGSLPGDFGFDPLG 82
Query: 63 LSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWR 112
LS DP + EI++ R+AMLG GA+ PE+L +G L+ P W++
Sbjct: 83 LS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLG---LIPPETALPWFQ 138
Query: 113 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEAL 164
G G T Y P + + + LM E R+ G +
Sbjct: 139 TGVIPPAG-TYSYWADP----------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYF 187
Query: 165 EPLGIFL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
FL GD YPGG +F+PL KD + +ELK+KE+KNGRLAM+A LGF+IQ
Sbjct: 188 LGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFFIQGLV 247
Query: 223 TGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 248 TGVGPFQNLLDHLADPVNNNVLTSLK 273
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 118
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + + ++G I
Sbjct: 119 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADI------ 170
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
+ P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 171 LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLA 227
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 228 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 263
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 22/210 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P + I + + + + E R +
Sbjct: 116 AQE-------WAAVPGGQATYLGAP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 162
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 214
Query: 224 GKGPVQNLLDHISDPLHNNLLSMVKSMDDP 253
G GP++NL H++DP HNN+ ++ ++ P
Sbjct: 215 GTGPLENLASHLADPWHNNIGDIIPQINLP 244
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 134/266 (50%), Gaps = 45/266 (16%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
++KA+ + +Q + LW+ ++ SYL G LPGD+GFD G
Sbjct: 33 SSRKASFVVKAASTPPVKQGADRQLWFASKQSL----------SYLDGSLPGDFGFDPLG 82
Query: 63 LSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWR 112
LS DP + EI++ R+AMLG GA+ PE+L +G L+ P W++
Sbjct: 83 LS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLG---LIPPETALPWFQ 138
Query: 113 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEAL 164
G G T Y P + + + LM E R+ G +
Sbjct: 139 TGVIPPAG-TYSYWADP----------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYF 187
Query: 165 EPLGIFL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
FL GD YPGG +F+PL KD + +ELK+KE+KNGRLAM+A LGF+IQ
Sbjct: 188 LGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFFIQGLV 247
Query: 223 TGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 248 TGVGPFQNLLDHLADPVNNNVLTSLK 273
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 118
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + + ++G I
Sbjct: 119 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADI------ 170
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
+ P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 171 LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLA 227
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 228 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 263
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 112/215 (52%), Gaps = 16/215 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 49 ERPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 105
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE+L +G L P W+ G + +T + + + ++G I +
Sbjct: 106 IFIPELLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELILIGWAEGRRWADIIK---- 159
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL + P +EL+ KEIKNGRLA
Sbjct: 160 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEIKNGRLA 214
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
M+A +G + QA +TG GP+ NL H++DP H +
Sbjct: 215 MLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIF 249
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 122/218 (55%), Gaps = 25/218 (11%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GL DP + EI++ R+AMLGA+GA+ PE+L
Sbjct: 79 SYLDGSLPGDYGFDPLGL-MDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGK 137
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 158
+G + W+R G G T DY P ++ A + L + RY
Sbjct: 138 LGLIPQETALPWFRTGVIPPAG-TYDYWADPFTLFVLEMALMGFAEHRRL-----QDYRY 191
Query: 159 CGIEALEPLGIFL--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
G + + FL G+ +YPGG LF+PL KD + +ELK+KE+KNGRLAM
Sbjct: 192 PGSMSKQ---YFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAM 248
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+A +G++IQ TG GP QNLLDH++DP++NNLL+ +K
Sbjct: 249 LAIVGYFIQGLVTGVGPFQNLLDHLADPVNNNLLTNLK 286
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 57 DRPIWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 113
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G + P W+ G + +T I + + ++G I +
Sbjct: 114 IFIPEFLTKIGILN--TPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK---- 167
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL + P +EL+ KEIKNGRLA
Sbjct: 168 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLA 222
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
M+A +G + QA +TG GP+ NL H++DP H +
Sbjct: 223 MLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIF 257
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 26/209 (12%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL +G +
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIE 162
+ P W+ G + + A S + VI + + + + +Y G
Sbjct: 115 V--PKWYDAGKVE--------------YFASSSTLFVIEFILFHYVELRRWQDIKYPGSV 158
Query: 163 ALEPL---GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
+PL P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q
Sbjct: 159 NQDPLFKQYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQ 213
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TGKGP NLL H+SDP HN ++ ++
Sbjct: 214 HNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 242
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 125/256 (48%), Gaps = 33/256 (12%)
Query: 1 MLETKKAALQDSSKFKALARQAR-NESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGF 58
L KK L++ + A++R A ++ ERP W G P P +L G LPGD+GF
Sbjct: 18 FLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTP---PEWLDGSLPGDFGF 74
Query: 59 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 118
D GLS DP + + E++H RWAMLGA G +PE L +G L P W+ G +
Sbjct: 75 DPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAGEQEY 132
Query: 119 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--------EALEPLGIF 170
+ + + + +L+ E R+ I + + P
Sbjct: 133 FTDK-----------------TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKL 175
Query: 171 LPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
D+ YPGG FDPL S P +EL+ KEIKNGRLAM+A +G + Q +TG GP+
Sbjct: 176 TGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 235
Query: 230 NLLDHISDPLHNNLLS 245
NL H++DP H + +
Sbjct: 236 NLFAHLADPGHATIFA 251
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 95/158 (60%), Gaps = 8/158 (5%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 58
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G++ + G+ YPGG FDPL L+ DPV F ELKVKEIK
Sbjct: 59 FQVILMGLVEGFRINGLDGVGE------GNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 112
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 113 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 150
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P + I + + + + E R +
Sbjct: 116 AQE-------WAAVPGGQATYLGAP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 162
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 214
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 215 GTGPLENLASHLADPWHNNIGDII 238
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 115/204 (56%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G PGD+GFD GL + P ++Y E++H RWAML G +VPE L +
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVK 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P + ++AI + L + E R ++
Sbjct: 116 AQE-------WAAIPGGQATYLGQP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKDSE 164
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
+ YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 165 K---------KKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYP 214
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 215 GTGPLENLATHLADPWHNNIGDVI 238
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 120/254 (47%), Gaps = 43/254 (16%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFD 59
L T KAA + S + A ERP W G P P +L G LPGD+GFD
Sbjct: 27 FLGTGKAATRSSFTVRTAA-----------PERPIWFPGSTP---PPWLDGSLPGDFGFD 72
Query: 60 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 119
GL DP + + E++H RWAMLGA G +PE+L +G L P W+ G +
Sbjct: 73 PWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI--LNTPSWYTAGEQEYF 130
Query: 120 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--------EALEPLGIFL 171
+T + + + +L+ E R+ I + + P
Sbjct: 131 TDT-----------------TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLT 173
Query: 172 PGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
D+ YPGG FDPL P +EL+ KEIKNGRLAM+A +G + QA +TG GP+ N
Sbjct: 174 GTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDN 233
Query: 231 LLDHISDPLHNNLL 244
L H++DP H +
Sbjct: 234 LFAHLADPGHATIF 247
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTTTKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHSRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
A Q ++ I Q +LM E R G PLG D YPGG+ FDPL L+ DP
Sbjct: 153 A--QSILAIWATQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDP 202
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + + ++G I
Sbjct: 120 IFIPEFLTKLGI--LNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADI------ 171
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
+ P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 172 LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLA 228
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 229 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 264
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 32/224 (14%)
Query: 31 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA
Sbjct: 63 SDRPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAA 119
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G +PE L +G L P W+ G + +T + I + +L
Sbjct: 120 GIFIPEFLTKIGV--LNTPFWYTAGEQQYFTDT-----------------TTLFIIELIL 160
Query: 150 MVGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKV 200
+ E R+ I + + P D+ YPGG FDPL S P +EL+
Sbjct: 161 IGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRT 220
Query: 201 KEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
KEIKNGRLAM+A +G + QA +TG GP+ NL H++DP H +
Sbjct: 221 KEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIF 264
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P + I + + + + E R +
Sbjct: 116 AQE-------WAAVPGGQATYLGNP----VPWGSLPTILVIEFVAIAFAEHQRTMEKD-- 162
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 214
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 215 GTGPLENLATHLADPWHNNIGDII 238
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 14 KFKALARQARNESLWYGE---ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA 69
KF A A R+ ++ RP W G P P +L G LPGD+GFD GL DP
Sbjct: 44 KFTAPAAGTRSFTVSAAAADPNRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPET 100
Query: 70 FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 129
+ EI+H RWAMLGA G +PE L +G + P W+ G + + +
Sbjct: 101 LKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILN--TPSWYTAGELEYFTDKTTLFIVE 158
Query: 130 GLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL- 188
+ + ++G I + P C + + P D+ YPGG FDPL
Sbjct: 159 MIFIGWAEGRRWADIIK------PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWG 209
Query: 189 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
S P +EL+ KEIKNGRLAM+A +G + QA +TG GP+ NL H++DP H + +
Sbjct: 210 SGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFA 266
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
+RP W P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 1 DRPLWF--PGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGI 58
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
+PE L G + P W G + + I + A ++G I V
Sbjct: 59 FIPEALTKAGILN--TPSWNVAGDQQYFADPTTLFVIELILFAWAEGRRWADI------V 110
Query: 152 GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL--SKDPVAFEELKVKEIKNGRLA 209
P C ++ + P D+ YPGG FDPL +KD +EL+ KEIKNGRLA
Sbjct: 111 NPGCVN---VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLA 167
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSM 246
M+A LG +QA +T GP+ NLL H++DP HN + ++
Sbjct: 168 MLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 204
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 126/245 (51%), Gaps = 45/245 (18%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FE 77
N LW+ ++ SYL G LPGD+GFD GLS DP + E
Sbjct: 53 NRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGE 101
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGIPGLHL 133
I++ R+AMLGA+GA+ PE+L G L+ P W+R G G T Y P
Sbjct: 102 IINGRYAMLGAVGAIAPEILGKAG---LIPPETALPWFRTGVIPPAG-TYSYWADP---- 153
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--IFL--------PGDINYPGGALF 183
+ + + LM E R +G FL G+ YPGG LF
Sbjct: 154 ------YTLFVFEMALMGFAEHRRLQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLF 207
Query: 184 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
+PL KD + ++LK+KE+KNGRLAM+A LG+++Q TG GP QNLLDH++DP+HNN+
Sbjct: 208 NPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNI 267
Query: 244 LSMVK 248
L+ +K
Sbjct: 268 LTSLK 272
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 117/242 (48%), Gaps = 36/242 (14%)
Query: 20 RQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
R A S ERP W G P P +L G LPGD+GFD GL DP + E+
Sbjct: 60 RAAVTVSQAVQTERPLWFPGNTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAEL 116
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAMLGA G +PE+ +G + P W+ G L+Y
Sbjct: 117 VHCRWAMLGAAGIFIPELCTKLGILN--TPSWYTAG-------ELEYF----------TD 157
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGI----FLPG------DINYPGGALFDPLNL 188
+ + + + + E R+ I LEP + P D+ YPGG FDPL
Sbjct: 158 KTTLFVVEMIFLGWAEGRRWADI--LEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 215
Query: 189 -SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
S P +EL+ KEIKNGRLAM+A +G + QA +TG GP+ NLL H++DP H + +
Sbjct: 216 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATIFAAF 275
Query: 248 KS 249
S
Sbjct: 276 SS 277
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 110/204 (53%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQ 111
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ G YLG P + I + + + + E R +
Sbjct: 112 AQE-------WAAEPGGQATYLGNP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 158
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDPV FEE K+KEIKNGRLAM+A++ F + Q+A+
Sbjct: 159 -------PEKKKYPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYP 210
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H+SDP HNN+ ++
Sbjct: 211 GTGPLENLASHLSDPWHNNIGDII 234
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 110/220 (50%), Gaps = 16/220 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE+L +G + P W+ G + + + + L ++G I +
Sbjct: 129 IFIPELLTKLGILN--TPSWYTAGEQEYFTDKTTLFVVEMIFLGWAEGRRWADIIKP--- 183
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
+ + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 184 ------GSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 237
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
M+A +G + QA +TG GP+ NLL H++DP H + + S
Sbjct: 238 MLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 277
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 66 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 122
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 123 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 176
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 177 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 231
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + S
Sbjct: 232 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFS 267
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG 59
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 174
LDYLG P L A Q ++ I CQ +LM E R G PLG + D
Sbjct: 60 SQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVV--D 111
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 218
YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 112 PLYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
RP W G P P +L G LPGD+GFD GL DP + EI+H RWAMLGA G
Sbjct: 66 NRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAG 122
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + + + + + ++G I +
Sbjct: 123 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIK---- 176
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 177 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLA 231
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + QA +TG GP+ NL H++DP H + +
Sbjct: 232 MLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFA 267
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 32/224 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 50 ERPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAG 106
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + + + + + +L+
Sbjct: 107 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 147
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 148 GWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTK 207
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
EIKNGRLAM+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 208 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 251
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 32/213 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV +G +
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 121 V--PKWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 161
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
+ IF P + YPGG +F+PLN + A EE K KE+ NGRLAM+A+LGF
Sbjct: 162 GCVNQDPIFKNYSLPPNECGYPGG-IFNPLNFA----ATEEAKEKELANGRLAMLAFLGF 216
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+Q TGKGP NLL H+SDP HN ++ + S
Sbjct: 217 IVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLSS 249
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 113/204 (55%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ L Y G+P + ++AI + L + E R +
Sbjct: 117 AQE-------WAALPDGQATYFGVP---VPWGNLPTILAI-EFLAIAFAEQQRTMEKD-- 163
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 164 -------PEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 215
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +V
Sbjct: 216 GTGPLENLGAHLADPWHNNIGDIV 239
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G
Sbjct: 75 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 132 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIK---- 185
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 186 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 240
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 241 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 276
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGV-KFGEAVWFKAG 59
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGD 174
LDYLG P L A Q ++ I CQ +LM E R G PLG + D
Sbjct: 60 SQIFSEGGLDYLGNPTLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVV--D 111
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 218
YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++
Sbjct: 112 PLYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 112/219 (51%), Gaps = 17/219 (7%)
Query: 31 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA
Sbjct: 63 NDRPLWFPGSQP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAA 119
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G +PE L G + P W G + + I + A ++G I
Sbjct: 120 GIFIPEALTKAGILN--TPSWTVAGDQQYFTDATTLFVIEIILFAWAEGRRWADI----- 172
Query: 150 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK--DPVAFEELKVKEIKNGR 207
+ P C ++ + P D+ YPGG FDPL + D ++L+ +EIKNGR
Sbjct: 173 -INPGCVN---VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGR 228
Query: 208 LAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSM 246
LAM+A LG +QA +T GP+ NLL H++DP HN + ++
Sbjct: 229 LAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 267
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
VE W + + G YLG+P G I + L + ++ G L
Sbjct: 114 WVEAQKW----AAIPGGQATYLGVPV-----PWGYFPIILSIFFLKMAFAESQRNGEPDL 164
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 223
E YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++GF +QA A
Sbjct: 165 E--------KRKYPGGA-FDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANP 215
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H+SDP H N+ ++
Sbjct: 216 GTGPLENLATHLSDPWHKNIAEII 239
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 110/223 (49%), Gaps = 32/223 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 54 NRPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 110
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + I + +L+
Sbjct: 111 IFIPEFLTKIGV--LNTPFWYTAGEQQYFTDT-----------------TTLFIIELILI 151
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 152 GWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTK 211
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
EIKNGRLAM+A +G + QA +TG GP+ NL H++DP H +
Sbjct: 212 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIF 254
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 106/199 (53%), Gaps = 22/199 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 139
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E G + G + + +P + LA I A Q + PE
Sbjct: 140 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPE---------- 188
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
YPGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 189 ---------KKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 238
Query: 224 GKGPVQNLLDHISDPLHNN 242
G GP++NL H++DP HN
Sbjct: 239 GTGPLENLATHLADPWHNT 257
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 173
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 174 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 228
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + S
Sbjct: 229 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFS 264
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 15/183 (8%)
Query: 68 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 127
M+ + Y +E++HARWA+L A G + P + G+ E +WW+ G L+G+++ Y G
Sbjct: 29 MSLKSYQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFG 88
Query: 128 --IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP 185
+P ++LA + I + L+ G E R PLG L D +PGGA FDP
Sbjct: 89 ATVP-INLAAA------VISEVNLVGGSEYYRSTNKS---PLGSDL--DRLHPGGA-FDP 135
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
L L+KDP F LKVKEI NGRLAM + LGF+++A TG+GPV+NL H+SDP NNLL+
Sbjct: 136 LGLAKDPDQFALLKVKEIMNGRLAMFSMLGFFVKAYVTGEGPVENLAAHLSDPFGNNLLT 195
Query: 246 MVK 248
+++
Sbjct: 196 VIQ 198
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 108/206 (52%), Gaps = 34/206 (16%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL P F+++ E+ H RWAML G LVPE L +
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 84
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIP------GLHLAGSQGVIVIAICQALLMVGPECARY 158
E ++ + G Y G+P LA I A Q + PE +Y
Sbjct: 85 AQE-------WAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQRTMEKDPEKKKY 137
Query: 159 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 218
PGGA FDPL SKDPV FEE K+KEIKNGRLAM+A++GF +
Sbjct: 138 -------------------PGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCV 177
Query: 219 -QAAFTGKGPVQNLLDHISDPLHNNL 243
Q+A+ G GP++NL H++DP HNN+
Sbjct: 178 QQSAYPGTGPLENLASHLADPWHNNI 203
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIK---- 174
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 229
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 230 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 265
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 120/236 (50%), Gaps = 28/236 (11%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FE 77
N LW+ + SYL G LPGDYGFD GLS DP + E
Sbjct: 58 NRQLWFASSQSL----------SYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAE 106
Query: 78 ILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
I++ R+AMLGA GA+ PE+ +G VW++ G G T +Y P
Sbjct: 107 IINGRYAMLGAAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAG-TYNYWADPYTLFFLE 165
Query: 137 QGVIVIA---ICQALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
++ A Q G +Y G E LG GD YPGG +F+P KD
Sbjct: 166 MALMGFAEHRRAQDFYKPGSMGKQYFLGFEKY--LGG--SGDPAYPGG-IFNPFGFGKDE 220
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+ LK+KE+KNGRLAM+A LG++IQA FTG GP QNLLDH++DP NN+L+ +K
Sbjct: 221 KSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNLK 276
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 66
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P + I + + + + E R +
Sbjct: 67 AQE-------WAAVPGGQATYLGAP----VPWGTLPTILVIEFVAIAFAEHQRTMEKD-- 113
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP FEE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 114 -------PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 165
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 166 GTGPLENLASHLADPWHNNIGDII 189
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 110/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 75 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 132 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIK---- 185
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 186 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 240
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 241 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 276
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 121/234 (51%), Gaps = 40/234 (17%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
E R WL + D P +L G L GD+GFD GL +DP + + Y E++H R+AMLG G
Sbjct: 48 EHRQTWLPGL--DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSG 105
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+ ++L + G L PVW+ G ++Y G + I Q LLM
Sbjct: 106 VLLTDLLRVTGISEL--PVWYNAG-------AVEY---------GFANKRTLFIVQLLLM 147
Query: 151 VGPECARYC-----GIEALEPLGIFL----------PGDINYPGGALFDPLNLSKDPVAF 195
E RY G +A E G F PG YPGG L +PL ++KD
Sbjct: 148 GFVETKRYMDFKSPGSQAQE--GTFFGLEAAFKGLEPG---YPGGPLLNPLGIAKDIKNA 202
Query: 196 EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+ K+KEIKNGRLAMVA LG ++QA T GP+ NL++H+S+P H ++ + S
Sbjct: 203 HDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSS 256
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 113/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 91 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG 147
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE L+ +G Y+ +Y P + I Q +LM
Sbjct: 148 ILIPEWLESLGFIE---------NYNWFDAGAREYFADP----------TTLFIVQLVLM 188
Query: 151 VGPECARYCG--------IEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ IE P D+ YPGG FDPL + P L+ K
Sbjct: 189 GWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTK 248
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A++GF QA +TG+GP++NL+ HI+DP H N+ S S
Sbjct: 249 EIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTS 296
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 120/236 (50%), Gaps = 28/236 (11%)
Query: 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FE 77
N LW+ + SYL G LPGDYGFD GLS DP + E
Sbjct: 58 NRQLWFASSQSL----------SYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAE 106
Query: 78 ILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
I++ R+AMLGA GA+ PE+ +G VW++ G G T +Y P
Sbjct: 107 IINGRYAMLGAAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAG-TYNYWADPYTLFFLE 165
Query: 137 QGVIVIA---ICQALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
++ A Q G +Y G E LG GD YPGG +F+P KD
Sbjct: 166 MALMGFAEHRRAQDYYKPGSMGKQYFLGFEKY--LG--GSGDPAYPGG-IFNPFGFGKDE 220
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+ LK+KE+KNGRLAM+A LG++IQA FTG GP QNLLDH++DP NN+L+ +K
Sbjct: 221 KSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNLK 276
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 110/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIK---- 174
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 229
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 230 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 265
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE+L +G + P W+ G L+Y + + + + +
Sbjct: 129 IFIPELLTKLGILN--TPSWYTAG-------ELEYF----------TDKTTLFVVEMIFL 169
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 170 GWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTK 229
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A +G + QA +TG GP+ NLL H++DP H + + S
Sbjct: 230 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 277
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 114/204 (55%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G PGD+GFD GL + P ++Y E++H RWAML G +VPE L +
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVK 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P + ++AI + L + E R ++
Sbjct: 116 AQE-------WAAIPGGQATYLGQP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKDSE 164
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
+ YPGGA FDPL SKDP FEELKVKEIKNGRLA++A +GF + Q+A+
Sbjct: 165 KK---------KYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL 214
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 215 GTGPLENLATHLADPWHNNIGDVI 238
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 113/204 (55%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L +
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P + ++AI + L + E R +
Sbjct: 116 AQE-------WAAIPGGQATYLGQP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 162
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYP 214
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 215 GTGPLENLATHLADPWHNNIGDVI 238
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 112/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL P F+++ E+ H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G Y G+P + ++AI + L + E R +
Sbjct: 117 AQE-------WAAVPGGQATYFGVP---VPWGNLPTILAI-EFLAIAFAEHQRTMEKD-- 163
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDPV EE K+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 164 -------PEKKKYPGGA-FDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 215
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +V
Sbjct: 216 GTGPLENLASHLADPWHNNIGDVV 239
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 99/178 (55%), Gaps = 13/178 (7%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+ + S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 54 KTVSSGSPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 113
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 114 HCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 170
Query: 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL---SKDPVA 194
+ I Q LLM E R G PLG + D YPGG+ FDPL L SK P A
Sbjct: 171 LAIWATQVLLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLARRSKTPFA 221
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 136/272 (50%), Gaps = 59/272 (21%)
Query: 7 AALQDSSKF--KALA----RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+A Q S F KA A +Q N LW+ + SYL G LPGDYGFD
Sbjct: 29 SASQKKSSFVVKATATPPVKQGANRPLWFASSQSL----------SYLDGSLPGDYGFDP 78
Query: 61 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----W 110
GLS DP + EI++ R+AMLGA GA+ PE+L G L+ P W
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG---LIPPETALPW 134
Query: 111 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR------------- 157
++ G G + A + + V+ + LM E R
Sbjct: 135 FQTGVIPPAGTYT--------YWADNYTLFVLEMA---LMGFAEHRRLQDWYNPGSMGKQ 183
Query: 158 -YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
+ G+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG+
Sbjct: 184 YFLGLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 239
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+IQ TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 240 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 271
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 110/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 120
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T I + + ++G I +
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYDAGKLEYFTDTTTLFIIELIFIGWAEGRRWADILK---- 174
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 175 --PGCVN---TDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 229
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 230 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 265
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 110/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 119
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + + ++G I +
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILK---- 173
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
+ + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 174 -----PGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLA 228
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 229 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 264
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 114/228 (50%), Gaps = 30/228 (13%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
+RP WL + P +L G LPGDYGFD L+ +P E++H RWAMLGA G
Sbjct: 13 DRPLWL--PGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGI 70
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
+PE+L +G + P W++ G + + QG + I + LLM
Sbjct: 71 FIPELLTKIGILN--TPSWYKAGDATYFAD---------------QGTLF--IVELLLMA 111
Query: 152 GPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKE 202
E R+ I + + P D+ YPGG FDPL S +E++ KE
Sbjct: 112 WAESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKE 171
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
+KNGRLAM+A LG ++QA T GP+ NL H++DP H +L V S+
Sbjct: 172 VKNGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVSSV 219
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYSAGEVEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 173
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 174 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 228
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 229 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 264
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYSAGEVEYFTDTTTLFIVELFFIGWAEGRRWADILK---- 173
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 174 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 228
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 229 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 264
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 119/240 (49%), Gaps = 33/240 (13%)
Query: 17 ALARQ-ARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
A++RQ A ++ +RP W G P P +L G LPGD+GFD GLS DP + +
Sbjct: 35 AVSRQDASVRAVAADPDRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNV 91
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
EI+H RWAMLGA G +PE L +G L P W+ G + +
Sbjct: 92 QAEIVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK------------ 137
Query: 135 GSQGVIVIAICQALLMVGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPL 186
+ + + +L+ E R+ I + + P D+ YPGG FDPL
Sbjct: 138 -----TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPL 192
Query: 187 NL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
S P +EL+ KEIKNGRLAM+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 193 GWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 127/238 (53%), Gaps = 34/238 (14%)
Query: 15 FKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 74
F ++ A+ S ++ WL + P YLTG L GD GFD GL++DP + +
Sbjct: 36 FTSIGSSAKTSSFKVEAKKGEWLPGLAS--PDYLTGSLAGDNGFDPLGLAEDPENLKWFV 93
Query: 75 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 134
E+++ RWAMLG G L+PEV +G ++ P W+ G + + A
Sbjct: 94 QAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAGKEQ--------------YFA 137
Query: 135 GSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIF----LP-GDINYPGGALFDPL 186
S + VI + +L E R+ I+ ++ IF LP G++ YPGG +F+PL
Sbjct: 138 SSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG-IFNPL 193
Query: 187 NLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
N + +E K KE+ NGRLAM+A+LGF +Q TGKGP +NLL H+SDP HN ++
Sbjct: 194 NFAPT----QEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 45/250 (18%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 75
A+Q + LW+ ++ SYL G LPGDYGFD GLS DP +
Sbjct: 41 AKQGADRQLWFASKQSL----------SYLDGTLPGDYGFDPLGLS-DPEGTGGFIEPKW 89
Query: 76 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGI 128
E+++ R+AMLGA+GA+ PE+ +G ++ P W++ G G T +Y
Sbjct: 90 LAYGEVINGRYAMLGAVGAIAPEIFGKMG---IIPPETALPWFKTGVIPPAG-TYNYW-- 143
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARY--------CGIEALEPLGIFL--PGDINYP 178
A S + V + LM E R G + L FL GD +YP
Sbjct: 144 -----ADSYTLFVFNMA---LMGFAEHRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYP 195
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GG LF+PL K ELK+KEIKNGRLAM+A LG++IQ TG GP QNLLDH++DP
Sbjct: 196 GGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADP 255
Query: 239 LHNNLLSMVK 248
++NN+L+ +K
Sbjct: 256 VNNNVLTSLK 265
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 143/281 (50%), Gaps = 44/281 (15%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN-- 75
+ + N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 50 VKQNGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPR 98
Query: 76 ----FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPG 130
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 99 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW---- 153
Query: 131 LHLAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPG 179
A + + V+ + Q G +Y G+E G+ G+ YPG
Sbjct: 154 ---ADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPG 206
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
G +F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG GP QNLLDH++DP+
Sbjct: 207 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPV 266
Query: 240 HNNLLSMVKSMDDPSGCPLERMRRCQFRCNQTRRSLVLSML 280
+NN+L+ S++ P P ++ R N+ +++ +L
Sbjct: 267 NNNILT---SLNLPQELPRCLHKKLVPRGNKEGKNMATQVL 304
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 130/249 (52%), Gaps = 41/249 (16%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN-- 75
+ + N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 346 VKKGGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPE 394
Query: 76 ----FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPG 130
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 395 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW---- 449
Query: 131 LHLAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPG 179
A + + V+ + Q G +Y G+E G+ G+ YPG
Sbjct: 450 ---ADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPG 502
Query: 180 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
G +F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG GP QNLLDH++DP+
Sbjct: 503 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPV 562
Query: 240 HNNLLSMVK 248
+NN+L+ +K
Sbjct: 563 NNNILTSLK 571
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 112/221 (50%), Gaps = 30/221 (13%)
Query: 33 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 92
RP WL P P++L G LP DYGFD L DP + + E++H RWAMLG G +
Sbjct: 42 RPTWLPGSPA--PAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMV 99
Query: 93 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG 152
PE+L +G L P W G K G L G + Q +M
Sbjct: 100 GPELLTKIGMADL--PNWIDAG--KWDGYWL--------------GAGPLFFVQMAMMNW 141
Query: 153 PECARYCGIEA-----LEPLGIFLPGDIN----YPGGALFDPLNLSKDPVAFEELKVKEI 203
E R+ ++A +PL GD N YP G LFDP+ +KDP EELK KEI
Sbjct: 142 AEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKG-LFDPMGYAKDPKKAEELKRKEI 200
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
NGRLAMVA +G + QA TG GPV NL H++DP HNN+
Sbjct: 201 ANGRLAMVAIVGCFAQAISTGTGPVDNLFTHLADPGHNNIF 241
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 114/204 (55%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
V+ W + L G YLG P G+ I+ A+ V E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFV--EHQRSMEKD-- 161
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +V
Sbjct: 214 GTGPLENLATHLADPWHNNIGDIV 237
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 132/269 (49%), Gaps = 39/269 (14%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 21 IFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS--SQSLSYLDGSLPGDYGFDP 78
Query: 61 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRV 113
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQT 137
Query: 114 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--------------YC 159
G G + A + + V+ + LM E R +
Sbjct: 138 GVIPPAGTYT--------YWADNYTLFVLEMA---LMGFAEHRRLQDWYNPGSMGKQYFL 186
Query: 160 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
G+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ
Sbjct: 187 GLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 243 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 271
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 118/214 (55%), Gaps = 17/214 (7%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GLS DP + + EI++ R+AMLGA GA+ PE+
Sbjct: 70 SYLDGSLPGDYGFDPLGLS-DPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAPEIFGK 128
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA---ICQALLMVGPEC 155
+G + W++ G G+ Y P ++ A Q G
Sbjct: 129 IGLIPQETAIPWFQTGVIPPLGQ-YSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMG 187
Query: 156 ARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWL 214
+Y G E + + GD YPGG LF+ L +D + ++LKVKE+KNGRLAM+A L
Sbjct: 188 KQYFLGFEKV----LGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVL 243
Query: 215 GFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
G++IQA FTG GP QNLLDH+SDP +NN+L+ +K
Sbjct: 244 GYFIQAIFTGVGPFQNLLDHLSDPANNNVLTNLK 277
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 114/224 (50%), Gaps = 32/224 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFG 111
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LVPE+L+ +G +S T +Y P + + Q LM
Sbjct: 112 ILVPELLERIGYIE---------NFSWYDAGTREYFVDP----------TTLFVVQMGLM 152
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ I E P D+ YPGG FDP+ + P L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
EIKNGRLAM+A++GF+ QA +TG+GP++NL+ H++DP H N+ S
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFS 256
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P++L G LP D+GFD GL +P + + EI+H+RWAMLGA G
Sbjct: 62 ERPLWFPGSTP---PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG 118
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + + + I + +L+
Sbjct: 119 IFIPEALTKLGI--LNTPFWYTAGEQEYFTDQ-----------------TTLFIVEMILL 159
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDP + P +EL+ K
Sbjct: 160 GWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTK 219
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A +G + QA +TG P+ NLL H++DP H + S S
Sbjct: 220 EIKNGRLAMLAVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAFTS 267
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P++L G LP D+GFD GL +P + + EI+H+RWAMLGA G
Sbjct: 62 ERPLWFPGSTP---PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG 118
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + + + I + +L+
Sbjct: 119 IFIPEALTKLGI--LNTPFWYTAGEQEYFTDQ-----------------TTLFIVEMILL 159
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDP + P +EL+ K
Sbjct: 160 GWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTK 219
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A +G + QA +TG P+ NLL H++DP H + S S
Sbjct: 220 EIKNGRLAMLAVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAFTS 267
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 98/169 (57%), Gaps = 16/169 (9%)
Query: 50 GELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 109
GE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E V
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAV 59
Query: 110 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG---IEALEP 166
W++ G LDYLG P +L +Q ++ I CQ +LM E R G E L+P
Sbjct: 60 WFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP 117
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 215
L YPGGA FDPL L+ P F ELKVKE+KNGRLAM + G
Sbjct: 118 L---------YPGGA-FDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 115/204 (56%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
V+ W + L G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +V
Sbjct: 214 GTGPLENLATHLADPWHNNIGDIV 237
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 118/259 (45%), Gaps = 41/259 (15%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWY-GEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
L + K + + F A QA LW+ G P WL G LPGD+GFD
Sbjct: 39 LRSAKVSAVSKASFSVRA-QATERPLWFPGSTAPEWL-----------DGSLPGDFGFDP 86
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
GL +P + + EI+H RWAMLGA G +PE+L +G + P W+ G
Sbjct: 87 LGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIGILN--TPSWYTAGEQTYFA 144
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--------EALEPLGIFLP 172
+ + I + L M E R+ I + + P
Sbjct: 145 DQ-----------------TTLFIVELLFMGWAEGRRWADILKPGSVNTDPVFPNNKLTG 187
Query: 173 GDINYPGGALFDPLNLSKDPVA-FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL 231
D+ YPGG FDPL A +EL+ KEIKNGRLAM+A +G + QA +TG GP+ NL
Sbjct: 188 TDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAWFQAVYTGTGPIDNL 247
Query: 232 LDHISDPLHNNLLSMVKSM 250
H++DP H + + + +
Sbjct: 248 FAHLADPGHATVFAALDKL 266
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 110/224 (49%), Gaps = 32/224 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 50 ERPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 106
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + + + + + +L+
Sbjct: 107 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 147
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 148 GWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTK 207
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
EIKNGRL M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 208 EIKNGRLTMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 251
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 32/224 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 51 DRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + + + + + +L+
Sbjct: 108 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 148
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 149 GWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTK 208
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
EIKNGRLAM+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 209 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 117/208 (56%), Gaps = 22/208 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
V+ W + L G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNLLSMVKSMD 251
G GP++NL H++DP H N+ +V ++
Sbjct: 214 GTGPLENLATHLADPWHKNIGDIVIPLN 241
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
Q +LM E R G PLG L DI YPGGA
Sbjct: 161 VQVVLMGFIEGYRVGG----GPLGEGL--DIIYPGGA 191
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 133/269 (49%), Gaps = 39/269 (14%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+ +K A K + + A + G RP W+ SYL G LPGDYGFD
Sbjct: 21 IFGSKPVASASQKKSSFVVKAAAAPPVKQGANRPLWVAS--SQSLSYLDGSLPGDYGFDP 78
Query: 61 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRV 113
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQT 137
Query: 114 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--------------YC 159
G G + A + + V+ + LM E R +
Sbjct: 138 GVIPPAGTYT--------YWADNYTLFVLEMA---LMGFAEHRRLQDWYNPGSMGKQYFL 186
Query: 160 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
G+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ
Sbjct: 187 GLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 243 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 271
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G
Sbjct: 65 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAG 121
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + + ++G I +
Sbjct: 122 IFIPEFLTKIGI--LNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILK---- 175
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 176 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 230
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 231 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 266
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 101/177 (57%), Gaps = 14/177 (7%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLH 132
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G +H
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG-KNIH 59
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
+ V+ + G E R LE D +PGG FDPL L+KDP
Sbjct: 60 INLVVAVVAEVVLVG----GAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDP 106
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 107 DQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISG 163
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 122 V--PKWYDAGKVE--------------YFASSSTLFVI---EFILFHYVELRRWQDIKYP 162
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ +F P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF
Sbjct: 163 GSVNQDPVFKNYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGF 217
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP +NLL H+SDP HN ++ +
Sbjct: 218 VVQHNVTGKGPFENLLQHLSDPWHNTIIQTFQ 249
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 127/261 (48%), Gaps = 42/261 (16%)
Query: 6 KAALQDSSKFKALARQARNESLWYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDVAG 62
KAA Q + A+A+ WYG R +L D PSYL G L GDYGFD G
Sbjct: 78 KAARQPVDQKAAIAK-------WYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLG 130
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L D + Y EILHARWAML G ++PE L++ G VW G L GET
Sbjct: 131 LGAD-GKVKDYRVAEILHARWAMLAVPGVVIPEALNIPGG------VWTETGKVFLDGET 183
Query: 123 LDYLGIPGLHLAGSQGVI----VIAICQALLMVGPECARYCGI--EALEPL-GIFLPGDI 175
G ++ + A Q +LM G E R G+ P G F
Sbjct: 184 ------------GRDSILEFWPIYAAIQVVLMGGAEKFRQDGVGPAGFVPFKGKFEESAF 231
Query: 176 N-----YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN 230
N PGG L D +++K+P + LKVKEIKNGRLAM+A LG ++Q A TG+GP N
Sbjct: 232 NGLDPVNPGGPL-DFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFVQGAVTGEGPAAN 290
Query: 231 LLDHISDPLHNNLLSMVKSMD 251
H+++P N +++ +D
Sbjct: 291 WGKHVANPFGYNFVTITSGID 311
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 125/236 (52%), Gaps = 31/236 (13%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARW 83
G +RP W SYL G LPGDYGFD GLS DP + E+++ R+
Sbjct: 52 GVDRPLWF--ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRF 108
Query: 84 AMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 142
AMLGA+GA+ PE L VG W++ G G T +Y A + + V+
Sbjct: 109 AMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYW-------ADNYTLFVL 160
Query: 143 AICQALLMVGPECARYCGIEALEPLG--IFL--------PGDINYPGGALFDPLNLSKDP 192
+ LM E R+ +G FL G+ YPGG F+PL KD
Sbjct: 161 EMA---LMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDE 217
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+ +ELK+KE+KNGRLAM+A LG++IQ TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 218 KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLK 273
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 125/241 (51%), Gaps = 24/241 (9%)
Query: 12 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 71
S + A ++SL ++ WL +P P+YL G L GD GFD GL++DP A
Sbjct: 30 SRNVQVAAAPISSQSLKVEAKKGEWLPGLPS--PAYLNGSLAGDNGFDPLGLAEDPAALN 87
Query: 72 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
Y E+ + RWAMLG G LVPEVL +G + P+W+ G ++Y
Sbjct: 88 WYVQAELQNGRWAMLGVAGMLVPEVLTKIGLIN--APLWYDAG-------KVEYFAP--- 135
Query: 132 HLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI---FLPGDINYPGGALFDPLNL 188
A + VI + + + + +Y G + +P PGD+ YPGG +F+PL
Sbjct: 136 --ASTLFVIEFILFHYVEIRRWQDIKYPGSVSQDPFFKSYKLPPGDVGYPGG-IFNPLKF 192
Query: 189 SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+ +E K KEI NGRLAM+A+LG +Q+ TG GP +NLL H++DP H ++ +
Sbjct: 193 PAN----QEYKEKEIANGRLAMLAFLGMLVQSKLTGAGPFENLLTHLADPWHTTIVQTLA 248
Query: 249 S 249
+
Sbjct: 249 N 249
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 112/200 (56%), Gaps = 22/200 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 63
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
V+ W + L G YLG P G+ I+ A+ V E R +
Sbjct: 64 WVKAQEW----AALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFV--EHQRSMEKD-- 113
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 114 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 165
Query: 224 GKGPVQNLLDHISDPLHNNL 243
G GP++NL H++DP HNN+
Sbjct: 166 GTGPLENLATHLADPWHNNI 185
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 104/197 (52%), Gaps = 12/197 (6%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G LPGD+GFD GLS DP + + E++H+RWAMLGA G +PE L +G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-- 58
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
L P W+ G + +T + + + ++G I P C + +
Sbjct: 59 LNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILN------PGCVN---TDPI 109
Query: 165 EPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 223
P D+ YPGG FDPL S P +EL+ KEIKNGRLAM+A +G + Q +T
Sbjct: 110 FPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYT 169
Query: 224 GKGPVQNLLDHISDPLH 240
G GP+ NL H++DP H
Sbjct: 170 GTGPIDNLFAHLADPGH 186
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 114/221 (51%), Gaps = 36/221 (16%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQ-----KYFNF-EILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD GL DP+ K+ + E++HARWAMLGA G + PEVL
Sbjct: 55 AYLDGSLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGA 113
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
G + W+ G G Y P I + + M E R
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWADP----------YTIFFVEIVAMQFAELRRL 163
Query: 158 -------------YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
+ G+EA+ GD YPGG F+ NL K A +ELK+KEIK
Sbjct: 164 QDFRYPGSMGQQYFLGLEAI----FKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIK 219
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
NGRLAM+A LG+ QA TGKGP QNL++H++DP++NN+L+
Sbjct: 220 NGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILT 260
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 113/222 (50%), Gaps = 38/222 (17%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD GL DP+ + E++HARWAMLGA G + PEVL
Sbjct: 55 AYLDGSLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGA 113
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
G + W+ G G Y P I + + M E R
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWADP----------YTIFFVEIVAMQFAELRRL 163
Query: 158 -------------YCGIEALEPLGIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
+ G+EA IF GD YPGG F+ NL K A +ELK+KEI
Sbjct: 164 QDFRYPGSMGQQYFLGLEA-----IFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEI 218
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KNGRLAM+A LG+ QA TGKGP QNL++H++DP++NN+L+
Sbjct: 219 KNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILT 260
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 122 V--PKWYDAGKVE--------------YFASSSTLFVI---EFILFHYVELRRWQDIKYP 162
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ +F P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF
Sbjct: 163 GSVNQDPVFKNYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGF 217
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP +NLL H+SDP HN ++ +
Sbjct: 218 VVQHNVTGKGPFENLLQHLSDPWHNTIIQTFQ 249
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL---GLGN 112
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
VE W + + G Y G+P G + I + L + ++ G
Sbjct: 113 WVEAQKW----AAIPGSQATYFGVPV-----PWGYLPIVLAVEFLAIAFVESQRNG---- 159
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 223
EP P YPGGA FDPL SKDPV F+E KVKEIKNGRLA++A++GF +QA A
Sbjct: 160 EPD----PEKRKYPGGA-FDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANP 214
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H+SDP H N+ ++
Sbjct: 215 GTGPLENLATHLSDPWHRNIAEII 238
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 113/217 (52%), Gaps = 18/217 (8%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFG 111
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI-VIAICQALL 149
LVPE+L+ +G +S +Y P G++ + +
Sbjct: 112 ILVPELLEKIGYIE---------NFSWYDAGAREYFVDPTTLFVVQMGLMGWVEGRRWAD 162
Query: 150 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRL 208
MV P IE P D+ YPGG FDP+ + P L+ KEIKNGRL
Sbjct: 163 MVNPGS---VDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRL 219
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AM+A++GF+ QA +TG+GP++NL+ H++DP H N+ S
Sbjct: 220 AMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFS 256
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 111/222 (50%), Gaps = 30/222 (13%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
+RP WL + P +L G LPGDYGFD L+ +P E++H RWAMLGA G
Sbjct: 64 DRPLWL--PGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGI 121
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
+PE+L +G + P W++ G + + QG + I + LLM
Sbjct: 122 FIPELLTKIGILN--TPSWYKAGDATYFAD---------------QGTLF--IVELLLMA 162
Query: 152 GPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKE 202
E R+ I + + P D+ YPGG FDPL S +E++ KE
Sbjct: 163 WAESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKE 222
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
+KNGRLAM+A LG ++QA T GP+ NL H++DP H +L
Sbjct: 223 VKNGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTIL 264
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 111/206 (53%), Gaps = 26/206 (12%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVK 119
Query: 105 LVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
E ++ + G YLG +P L V +AI A E R +
Sbjct: 120 AQE-------WAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFA------EHQRTMEKD 166
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAA 221
P YPGGA FDPL S+DP EE K+KEIKNGRLAM+A++GF + Q+A
Sbjct: 167 ---------PEKKKYPGGA-FDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSA 216
Query: 222 FTGKGPVQNLLDHISDPLHNNLLSMV 247
+ G GP++NL H++DP HNN+ ++
Sbjct: 217 YPGTGPLENLAAHLADPWHNNIGDII 242
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P G+ I+ A+ V + + E
Sbjct: 115 AQE-------WAAIPGGQATYLGNPVPW--GNLPTILAIEFLAIAFVEHQRSMEKDTEKK 165
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
+ YPGGA FDPL SKDPV FEE KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 166 K-----------YPGGA-FDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 214 GTGPLENLASHLADPWHNNIGDVI 237
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 122/225 (54%), Gaps = 34/225 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
++ WL +P P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G
Sbjct: 52 KKGEWLPGLPS--PTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGM 109
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
++PEVL G ++ P W+ G ++ + A S + VI + +L
Sbjct: 110 VLPEVLTNYGIINV--PKWYDAGKAE--------------YFASSSTLFVI---EFILFH 150
Query: 152 GPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
E R+ I+ ++ IF P D+ YPGG +F+PLN +P E + KEI
Sbjct: 151 YVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGG-IFNPLNF--EPTL--EAREKEI 205
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
NGRLAM+A+LGF +Q TGKGP N + HISDP HN ++ ++
Sbjct: 206 ANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTLR 250
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 111/224 (49%), Gaps = 32/224 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 51 DRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAG 107
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + + + + + +L+
Sbjct: 108 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDK-----------------TTLFVVELILI 148
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVK 201
E R+ I + + P D+ YPGG FDPL S P +EL+ K
Sbjct: 149 GWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTK 208
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
EIKNGRLAM+A +G + Q +TG GP+ NL H++DP H + +
Sbjct: 209 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 41/247 (16%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN---- 75
+ N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 332 KGGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWL 380
Query: 76 --FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLH 132
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 381 AYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW------ 433
Query: 133 LAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGA 181
A + + V+ + Q G +Y G+E G+ G+ YPGG
Sbjct: 434 -ADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPGGP 488
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
+F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG GP QNLLDH++DP++N
Sbjct: 489 IFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNN 548
Query: 242 NLLSMVK 248
N+L+ +K
Sbjct: 549 NILTSLK 555
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 41/247 (16%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN---- 75
+ N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 52 QNGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWL 100
Query: 76 --FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLH 132
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 101 AYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW------ 153
Query: 133 LAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGA 181
A + + V+ + Q G +Y G+E G+ G+ YPGG
Sbjct: 154 -ADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPGGP 208
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
+F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG GP QNLLDH++DP++N
Sbjct: 209 IFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNN 268
Query: 242 NLLSMVK 248
N+L+ +K
Sbjct: 269 NILTSLK 275
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 115/204 (56%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
V+ W + + G YLG P + ++AI + L + E R +
Sbjct: 112 WVKAQEW----AAVPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD-- 161
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +V
Sbjct: 214 GTGPLENLATHLADPWHNNIGDIV 237
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 97/158 (61%), Gaps = 10/158 (6%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++VI
Sbjct: 1 MLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILVIWA 57
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 58 TQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS-FDPLGLADDPEAFAELKVKELK 110
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH+SDP++NN
Sbjct: 111 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 148
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 32/215 (14%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 123 V--PKWYDAGKEE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 163 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF LP G++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGF 218
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMD 251
IQ TGKGP NLL H+SDP HN ++ + +
Sbjct: 219 IIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGSN 253
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 115/211 (54%), Gaps = 32/211 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + + E R+ I+
Sbjct: 123 V--PKWYAAGKEE--------------YFASSSTLFVIEFILSHYV---EIRRWQDIKNP 163
Query: 163 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF LP G++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGF 218
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IQ TGKGP NLL HISDP HN ++ +
Sbjct: 219 IIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 41/247 (16%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN---- 75
+ N LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 52 QNGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWL 100
Query: 76 --FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLH 132
EI++ R+AMLGA GA+ PE+L G + W++ G G T +Y
Sbjct: 101 AYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYW------ 153
Query: 133 LAGSQGVIVIAIC----------QALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGA 181
A + + V+ + Q G +Y G+E G+ G+ YPGG
Sbjct: 154 -ADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEK----GLGGSGEPAYPGGP 208
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
+F+PL KD + +ELK+KE+KNGRLAM+A LG++IQA TG GP QNLLDH++DP++N
Sbjct: 209 IFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNN 268
Query: 242 NLLSMVK 248
N+L+ +K
Sbjct: 269 NILTSLK 275
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 121/226 (53%), Gaps = 34/226 (15%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
E + WL +P P+YL G LPGD GFD GL++DP + Y E+++ARWAMLG G
Sbjct: 44 EAKGEWLPGLPS--PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAG 101
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PEVL +G + P+W+ G S + A S + VI + +L
Sbjct: 102 MLLPEVLTKIGIIN--APLWYDAGKST--------------YFASSSTLFVI---EFILF 142
Query: 151 VGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
E R+ I+ + IF P + YP G++F+PLN +P E K KE
Sbjct: 143 HYVEIRRWQDIKNPGCVNQDPIFKNYSLPPHECGYP-GSVFNPLNF--EPTL--EAKEKE 197
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+ NGRLAM+A+L F +Q TGKGP +NLL H+SDP HN ++ +
Sbjct: 198 LANGRLAMLAFLAFMVQHGITGKGPFENLLQHLSDPWHNTIIQTLS 243
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 71
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P G+ I+ A+ V + + E
Sbjct: 72 AQE-------WAAIPGGQATYLGNP--VPWGNLPTILAIEFLAIAFVEHQRSMEKDTEKK 122
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
+ YPGGA FDPL SKDPV FEE KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 123 K-----------YPGGA-FDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYP 170
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 171 GTGPLENLASHLADPWHNNIGDVI 194
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 128/255 (50%), Gaps = 34/255 (13%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
L L FK++ ++ S ++ WL + P YL G L GD GFD
Sbjct: 22 FLTGSSGRLNRELSFKSIGSSSKTASFKVEAKKGEWLPGLAS--PGYLNGSLAGDNGFDP 79
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G +
Sbjct: 80 LGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAGKEQ--- 134
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----P 172
+ A S + VI + +L E R+ I+ ++ IF P
Sbjct: 135 -----------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
Query: 173 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
++ YPGG +F+PLN + P E K KE+ NGRLAM+A+LGF IQ TGKGP +NLL
Sbjct: 181 NEVGYPGG-IFNPLNFA--PTV--EAKEKELANGRLAMLAFLGFVIQHNVTGKGPFENLL 235
Query: 233 DHISDPLHNNLLSMV 247
H+SDP HN ++ +
Sbjct: 236 QHLSDPWHNTIVQTL 250
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 1 MLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWA 57
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
CQ +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 58 CQVVLMGAIEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELK 110
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
NGRLAM + GF++QA TGKGP++NL DH++DP++NN + ++
Sbjct: 111 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNL 156
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 113/222 (50%), Gaps = 38/222 (17%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD GL DP+ + E++HARWAMLGA G + PEVL
Sbjct: 42 AYLDGTLPGDFGFDPLGLL-DPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGA 100
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
G + W+ G G Y P I + + M E R
Sbjct: 101 AGLIPDATNIKWFESGVIPPAGSYDGYWADP----------YTIFFVEIVAMQFAELRRL 150
Query: 158 -------------YCGIEALEPLGIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
+ G+EA IF GD YPGG F+ NL K A +ELK+KEI
Sbjct: 151 QDFRYPGSMGQQYFLGLEA-----IFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEI 205
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
KNGRLAM+A LG+ QA TGKGP QNL++H++DP++NN+L+
Sbjct: 206 KNGRLAMLAMLGYGAQAVLTGKGPFQNLVEHLADPVNNNILT 247
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 115/233 (49%), Gaps = 37/233 (15%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 62 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 118
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G LVP++L G G+S + +Y P + + Q
Sbjct: 119 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP----------WTLFVSQMA 160
Query: 149 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 196
LM E R+ G +EP P D+ YPGG FD N + P
Sbjct: 161 LMGWAEGRRWADYLRPGCVDIEPR---FPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVM 217
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
L+ KEIKNGRLAM+A++GF+ QA +TG+GP+ NLL H++DP H N+ S S
Sbjct: 218 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 270
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 115/233 (49%), Gaps = 37/233 (15%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 62 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 118
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G LVP++L G G+S + +Y P + + Q
Sbjct: 119 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP----------WTLFVSQMA 160
Query: 149 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 196
LM E R+ G +EP P D+ YPGG FD N + P
Sbjct: 161 LMGWAEGRRWADYLRPGCVDIEPR---FPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVM 217
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
L+ KEIKNGRLAM+A++GF+ QA +TG+GP+ NLL H++DP H N+ S S
Sbjct: 218 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 270
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 105/179 (58%), Gaps = 18/179 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVTEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
DP F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISG 163
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL---GLGN 73
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
VE W + + G Y G+P G + I + L + ++ G
Sbjct: 74 WVEAQKW----AAIPGSQATYFGVPV-----PWGYLPIVLAVEFLAIAFVESQRNG---- 120
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 223
EP P YPGGA FDPL SKDPV F+E KVKEIKNGRLA++A++GF +QA A
Sbjct: 121 EPD----PEKRKYPGGA-FDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANP 175
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H+SDP H N+ ++
Sbjct: 176 GTGPLENLATHLSDPWHRNIAEII 199
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 105/178 (58%), Gaps = 18/178 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
DP F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 32/213 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G LPGD GFD GL++DP + + E+ + RWAMLG G L+PEV +G +
Sbjct: 62 PDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGIIN 121
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
P W+ G + + A S + VI + +L E R+ I+
Sbjct: 122 --APQWYDAGKQE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 162
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P ++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 163 GSVNQDPIFKSYRLPPNEVGYPGG-IFNPLNFAPS----LEAKEKEIANGRLAMLAFLGF 217
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
IQ TGKGP NLL H+SDP HN ++ + S
Sbjct: 218 LIQHNLTGKGPFDNLLQHLSDPWHNTIIQTLSS 250
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 115/233 (49%), Gaps = 37/233 (15%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 23 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 79
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G LVP++L G G+S + +Y P + + Q
Sbjct: 80 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP----------WTLFVSQMA 121
Query: 149 LMVGPECARYC-----GIEALEPLGIFLPG------DINYPGGALFDPLNLSK-DPVAFE 196
LM E R+ G +EP P D+ YPGG FD N + P
Sbjct: 122 LMGWAEGRRWADYLRPGCVDIEPR---FPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVM 178
Query: 197 ELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
L+ KEIKNGRLAM+A++GF+ QA +TG+GP+ NLL H++DP H N+ S S
Sbjct: 179 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 231
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 26/209 (12%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G LPGD G D GL++DP + + Y E+++ RWAMLG G +PEVL +G +
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA--ICQALLMVGPECARYCGIE 162
+ P W+ G + + A S + VI + + + + +Y G
Sbjct: 122 V--PKWYDAGKVE--------------YFASSXTLFVIEFILFHYVELRRWQDIKYPGSV 165
Query: 163 ALEPLG---IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
+P+ P ++ YPGG +F+PLN S E K KE+ NGRLAM+A+LGF +Q
Sbjct: 166 NQDPIXKSYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQ 220
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TGKGP NLL H+SDP HN ++ ++
Sbjct: 221 HNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 249
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 119/221 (53%), Gaps = 34/221 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
++ WL +P P+YL G LPGD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 51 KKGEWLPGLPS--PAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGM 108
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L+PEV +G ++ P W+ G + + A S + VI + +L
Sbjct: 109 LLPEVFTKIGIINV--PKWYDAGKEE--------------YFASSSTLFVI---EFILFH 149
Query: 152 GPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
E R+ I+ ++ IF P ++ YPGG +F+PLN + E K KE+
Sbjct: 150 YVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----LEAKEKEL 204
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
NGRLAM+A+LGF IQ TGKGP NLL H+SDP HN ++
Sbjct: 205 ANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTII 245
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 96/161 (59%), Gaps = 16/161 (9%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 1 MLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 57
Query: 145 CQALLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVK 201
Q +LM E R G E L+PL YPGGA FDPL L+ DP AF ELKVK
Sbjct: 58 SQVVLMGLIEGYRVGGGPLGEGLDPL---------YPGGA-FDPLGLADDPEAFAELKVK 107
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
EIKNGRLAM + GF++QA TGKGP++NL DH++DP NN
Sbjct: 108 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 148
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 105/179 (58%), Gaps = 18/179 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
DP F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISG 163
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 126/254 (49%), Gaps = 34/254 (13%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
+ A L SS+ A + E + WL +P P+YL G LPGD GFD G
Sbjct: 16 SSSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLG 73
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L++DP + Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 74 LAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE----- 126
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGD 174
+ A S + VI + +L E R+ I+ ++ IF P +
Sbjct: 127 ---------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHE 174
Query: 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 234
YP G++F+PLN + E K KE+ NGRLAM+A+L F IQ TGKGP NLL H
Sbjct: 175 CGYP-GSVFNPLNFAPT----LEAKEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQH 229
Query: 235 ISDPLHNNLLSMVK 248
+SDP HN ++ +
Sbjct: 230 LSDPWHNTIIQTLS 243
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 118/221 (53%), Gaps = 34/221 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
++ WL +P PSYL G LPGD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 51 KKGEWLPGLPS--PSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGM 108
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L+PEV +G + P W+ G ++ + A S + VI + +L
Sbjct: 109 LLPEVFTKIGIIN--APQWYDAGKAE--------------YFASSSTLFVI---EFILFH 149
Query: 152 GPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
E R+ I+ + IF P + YPGG +F+PLN + E K KE+
Sbjct: 150 YVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGG-IFNPLNFAPT----IEAKEKEL 204
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
NGRLAM+A+LGF IQ TGKGP +NLL HISDP HN ++
Sbjct: 205 ANGRLAMLAFLGFVIQHNVTGKGPFENLLQHISDPWHNTIV 245
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 18/177 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
DP F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 131/269 (48%), Gaps = 39/269 (14%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 21 IFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWF--ASSQSLSYLDGSLPGDYGFDP 78
Query: 61 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRV 113
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQT 137
Query: 114 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--------------YC 159
G G + A + + V+ + LM E R +
Sbjct: 138 GVIPPAGTYT--------YWADNYTLFVLEMA---LMGFAEHRRLQDWYNPGSMGKQYFL 186
Query: 160 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
G+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ
Sbjct: 187 GLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++ P++NN+L+ +K
Sbjct: 243 GLVTGVGPYQNLLDHLAGPVNNNVLTSLK 271
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 117/220 (53%), Gaps = 29/220 (13%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GL DP + + EI++ R+AMLGA GA+ PEVL
Sbjct: 33 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGR 91
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
+G + W++ G G Y P + + + LM E R
Sbjct: 92 IGLIPQETAIPWFQSGVIPPVG-NYSYWADP----------YTLFVLEMALMGFAEHRRA 140
Query: 158 -------YCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
G + L FL G N YPGG +F+ L K+ +ELKVKE+KNGRL
Sbjct: 141 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRL 200
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
AM+A LG++ QA FTG GP QNLLDH++DP+HNN+L+ +K
Sbjct: 201 AMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLK 240
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 131/269 (48%), Gaps = 39/269 (14%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+ TK A K + + + G RP W +YL G LPGDYGFD
Sbjct: 21 IFGTKPAVSTSRRKSSFVVKATSTPPVKQGANRPLWFASS--QSLTYLDGSLPGDYGFDP 78
Query: 61 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRV 113
GLS DP + EI++ R+AMLGA GA+ PE+L G + W++
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQT 137
Query: 114 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--------------YC 159
G G T Y A + + V+ + LM E R +
Sbjct: 138 GVIPPAG-TYSYW-------ADNYTLFVLEMA---LMGFAEHRRLQDWYNPGSMGKQYFL 186
Query: 160 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
G+E G G+ YPGG F+PL K+ + +ELK+KEIKNGRLAM+A LG+++Q
Sbjct: 187 GLEK----GFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYFVQ 242
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 243 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 271
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 106/199 (53%), Gaps = 22/199 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 117 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 169
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 170 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 215
Query: 224 GKGPVQNLLDHISDPLHNN 242
G GP++N H++DP HN
Sbjct: 216 GTGPLENPGTHLADPWHNT 234
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 61 DRPLWFPGSTP---PPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 117
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + ++G I +
Sbjct: 118 IFIPEFLTKIGV--LNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIK---- 171
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
P C + + P D+ YPGG FDPL + P ++L+ KEIKNGRLA
Sbjct: 172 --PGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLA 226
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
M+A +G + Q +T GP+ NL H++DP H + +
Sbjct: 227 MLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIFA 262
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 117/220 (53%), Gaps = 29/220 (13%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GL DP + + EI++ R+AMLGA GA+ PEVL
Sbjct: 15 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGR 73
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
+G + W++ G G Y P + + + LM E R
Sbjct: 74 IGLIPQETAIPWFQSGVIPPVG-NYSYWADP----------YTLFVLEMALMGFAEHRRA 122
Query: 158 -------YCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
G + L FL G N YPGG +F+ L K+ +ELKVKE+KNGRL
Sbjct: 123 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRL 182
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
AM+A LG++ QA FTG GP QNLLDH++DP+HNN+L+ +K
Sbjct: 183 AMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLK 222
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 126/242 (52%), Gaps = 28/242 (11%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 75
A+Q + LW+ ++ SYL G LPGD+GFD GLS DP +
Sbjct: 42 AKQGADRQLWFASKQSL----------SYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRW 90
Query: 76 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGL 131
E+ + R AM+G +G + PE+L +G + W++ G G T Y P
Sbjct: 91 LAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAG-TYTYWADPYT 149
Query: 132 HLAGSQGVIVIA---ICQALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLN 187
++ A Q G +Y G+E + G+ YPGG LF+PL
Sbjct: 150 LFVFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKY----LAGSGEPAYPGGPLFNPLG 205
Query: 188 L-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSM 246
+K +ELK+KEIKNGRLAM+A+LGF +QA FTG GPVQNLLDH++DP+HNN+L+
Sbjct: 206 FGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTS 265
Query: 247 VK 248
+K
Sbjct: 266 LK 267
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 32/224 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFG 111
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LVPE+L+ +G +S T +Y P + + Q LM
Sbjct: 112 ILVPELLERIGYIE---------NFSWYDAGTREYFVDP----------TTLFVVQMGLM 152
Query: 151 VGPECARYCGI--------EALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ I E P D+ YPGG FDP+ + P L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
EIKNG LAM+A++GF+ QA +TG+GP++NL+ H++DP H N+ S
Sbjct: 213 EIKNGGLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFS 256
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 117/220 (53%), Gaps = 29/220 (13%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GL DP + + EI++ R+AMLGA GA+ PEVL
Sbjct: 15 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGR 73
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
+G + W++ G G Y P + + + LM E R
Sbjct: 74 IGLIPQETAIPWFQSGVIPPVG-NYSYWADP----------YTLFVLEMALMGFAEHRRA 122
Query: 158 -------YCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
G + L FL G N YPGG +F+ L K+ +ELKVKE+KNGRL
Sbjct: 123 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRL 182
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
AM+A LG++ QA FTG GP QNLLDH++DP+HNN+L+ +K
Sbjct: 183 AMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLK 222
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 107/206 (51%), Gaps = 26/206 (12%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G LP DYGFD L DP E++H RWAM+G G LVP +L +GA +
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
+ PVW+ G ++ + + + + L M E R+ I++
Sbjct: 69 V--PVWFEAGKVANDNSSVPF--------------SALLMVEFLAMGFVETKRWYDIKSP 112
Query: 165 EPLG---IFLPGD------INYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWL 214
G IF D + YPGG FDP SK +++ L+VKEI NGRLAMVA +
Sbjct: 113 GSQGDGSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMV 172
Query: 215 GFYIQAAFTGKGPVQNLLDHISDPLH 240
GF+ Q A TGKGPV NL DHI+DP H
Sbjct: 173 GFWAQYAATGKGPVDNLFDHIADPGH 198
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 48/252 (19%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
+ + L S+ ++L +A+ E WL +P P+YL G+LPGD GFD G
Sbjct: 26 HSSRLGLASSTSRRSLRVEAKGE----------WLPGLPS--PAYLDGKLPGDNGFDPLG 73
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L++DP + Y E+++ RWAMLG G L PE+L +G + P W+ G S
Sbjct: 74 LAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN--APEWYDAGKST----- 126
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI----------FLP 172
+ A S + V+ + +L E R+ I+ EP + P
Sbjct: 127 ---------YFASSSTLFVV---EFILFHYVEIRRWQDIK--EPGCVNQDPIFKSYSLPP 172
Query: 173 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
+ YPG ++F+PLN + E K KEI NGRLAM+A+LGF +Q A TGKGP+ NL
Sbjct: 173 HECGYPG-SVFNPLNFAPT----LEAKEKEIANGRLAMLAYLGFSVQHAVTGKGPLDNLF 227
Query: 233 DHISDPLHNNLL 244
H+SDP HN ++
Sbjct: 228 QHLSDPWHNTII 239
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 104/178 (58%), Gaps = 18/178 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE+ HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
DP F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 104/178 (58%), Gaps = 18/178 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE+ HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
DP F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHMSDPFGNNLLTVIS 162
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 116/209 (55%), Gaps = 22/209 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G LPGD GFD GL+ DP + Y E+ + RWAM+G G L+PEVL +G +
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
P+W+ G ++Y A + VI + + + + +Y G
Sbjct: 119 --APLWYDAG-------KVEYFAP-----ASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 165 EPL--GIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 221
+P+ G L P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF IQ+
Sbjct: 165 DPIFKGYSLPPNEVGYPGG-IFNPLNFPAN----EEYKEKELANGRLAMLAFLGFIIQSN 219
Query: 222 FTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
T +GP +NLL H+SDP H+ ++ ++ +
Sbjct: 220 VTHQGPFENLLTHLSDPWHHTIVQSIQGL 248
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 128/268 (47%), Gaps = 37/268 (13%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
+ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 21 IFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS--SQSLSYLDGSLPGDYGFDP 78
Query: 61 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP---------A 128
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--------------YCG 160
+ L + G + + + + AL+ E R + G
Sbjct: 129 ETALPXXQTGVIPPAGTYTYWADNYTLFVLEMALMGFA-EHRRLQDWYNPGSMGKQYFLG 187
Query: 161 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 220
+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ
Sbjct: 188 LEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQG 243
Query: 221 AFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 244 LVTGVGPYQNLLDHLADPVNNNVLTSLK 271
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 115/237 (48%), Gaps = 32/237 (13%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K R R+ S+ +P W + D P +L GELPGDYGFD L K+P + Y
Sbjct: 17 KTTKRSQRSVSV-RASTQPMWFPGM--DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQ 73
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
E+ H RWAMLG GA PE+L +G L P W QG D
Sbjct: 74 AELQHGRWAMLGVAGAAAPEILTKMGISDL--PNWHDA--PNYQGYFTD----------- 118
Query: 136 SQGVIVIAICQALLMVGPECARYCGIEALEPL-------GIFLP-GDINYPGGALFDPLN 187
+ Q L+M E R+ + + G LP G + YPGG +FDPL
Sbjct: 119 ---ATTLFWVQMLMMNWAEVRRWQDMRKPGSVNEDPAFSGNKLPSGIVGYPGG-IFDPLG 174
Query: 188 LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
+K + +LK KEI NGRLAMVA+ G +Q TG GPV NL+ H+SDP HNN+
Sbjct: 175 YAKGDL--NKLKAKEIANGRLAMVAFAGIMVQYDHTGVGPVANLVAHMSDPAHNNVF 229
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 95/168 (56%), Gaps = 10/168 (5%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P L A S I+
Sbjct: 104 MLGALGCVFPEILCKNG-LKFGEAVWFKAGPQIFFEGGLDYLGHPNLVHAQSFLPILGGA 162
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
A E + + PL L DI YPGGAL+ PL LS DP
Sbjct: 163 SGAH-----EASSRATVLVAAPL---LGPDIIYPGGALY-PLGLSADP 201
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 117/221 (52%), Gaps = 34/221 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
++ WL +P PSYL G LPGD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 51 KKGEWLPGLPS--PSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGM 108
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L+PEV +G + P W+ G ++ + A S + VI + +L
Sbjct: 109 LLPEVFTKIGIIN--APQWYDAGKAE--------------YFASSSTLFVI---EFILFH 149
Query: 152 GPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
E R+ I+ + IF P + YPGG +F+PLN + E K KE+
Sbjct: 150 YVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGG-IFNPLNFAPT----IEAKEKEL 204
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
NGRLAM+A+LGF IQ TGKGP NLL HISDP HN ++
Sbjct: 205 ANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHISDPWHNTIV 245
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 116/209 (55%), Gaps = 22/209 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G LPGD GFD GL+ DP + Y E+ + RWAM+G G L+PEVL +G +
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
P+W+ G ++Y A + VI + + + + +Y G
Sbjct: 119 --APLWYDAG-------KVEYFAP-----ASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 165 EPL--GIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 221
+P+ G L P ++ YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF IQ+
Sbjct: 165 DPIFKGYSLPPNEVGYPGG-IFNPLNFPAN----EEYKEKELANGRLAMLAFLGFIIQSN 219
Query: 222 FTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
T +GP +NLL H+SDP H+ ++ ++ +
Sbjct: 220 VTHQGPFENLLTHLSDPWHHTIVQSIQGL 248
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 100/176 (56%), Gaps = 14/176 (7%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLH 132
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G +H
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG-KNIH 59
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
+ V+ + G E R LE D + GG FDPL L+KDP
Sbjct: 60 INLVVAVVAEVVLVG----GAEYYRIINGLDLE--------DKLHHGGP-FDPLGLAKDP 106
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
F LKVKEIKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 107 DQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 109/210 (51%), Gaps = 34/210 (16%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P ++Y E++H RWAML G L+PE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILIPEALGLGNWVK 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAIC----QALLMVGPECARY 158
E ++ G YLG +P L + +AI Q + PE +
Sbjct: 115 AQE-------WAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFVEHQRSMEKDPEKKK- 166
Query: 159 CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 218
YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++GF +
Sbjct: 167 ------------------YPGGA-FDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCV 207
Query: 219 -QAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
Q+A+ G GP++NL H++DP HNN+ ++
Sbjct: 208 QQSAYPGTGPLENLATHLADPWHNNIGDII 237
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 116/228 (50%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPG++GFD GL DP + E++HARWAMLG G
Sbjct: 61 DRPLWFPGSSP---PEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE+L+ +G ++ W+ G +++Y P + I Q LM
Sbjct: 118 ILIPEILEKIG--YVKNFSWYNAG-------SVEYFADP----------TTLFIVQLALM 158
Query: 151 VGPECARYC-----GIEALEPLGIFLPG---DINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ G +EP P D+ YPGG FDP+ + P L+ K
Sbjct: 159 GWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTK 218
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A+LGF QA + G P+ NL+ H++DP H N+ S S
Sbjct: 219 EIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTS 266
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 81/130 (62%), Gaps = 5/130 (3%)
Query: 28 WYGEERPRWLGPIPY--DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 85
WYG +RP+WL P + P YLTGE PGDYG+D GLS DP F Y E+LHARWAM
Sbjct: 120 WYGPDRPKWL-PDAFLAGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAM 178
Query: 86 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 145
LGALG + PEV++ ++ EPVWW+ G L G+++DYLG A S +I IA
Sbjct: 179 LGALGCVFPEVINSYYNGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASS--IIAIAGA 236
Query: 146 QALLMVGPEC 155
Q +LM G E
Sbjct: 237 QVVLMGGAEA 246
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 113/213 (53%), Gaps = 32/213 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G S+ + A S + VI + +L E R+ I+
Sbjct: 123 V--PKWYDAGKSE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P YPGG +F+PLN + EE K KE+ NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKSYSLPPNKCGYPGG-IFNPLNFAPT----EEAKEKELANGRLAMLAFLGF 218
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
+Q TGKGP NLL H+ DP HN ++ + +
Sbjct: 219 IVQHNVTGKGPFDNLLQHLFDPWHNTIIQTLSN 251
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 155 CARYCGIEALEPLGIFLPG-------DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGR 207
+ Y + G +LPG D + PG FDPL L++DP + E+ NGR
Sbjct: 41 SSSYNSFKVEAKKGQWLPGLASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGR 100
Query: 208 LAMVAWLGFYIQAAFTGKG 226
AM+ G + FT G
Sbjct: 101 WAMLGVAGMLLPEVFTSIG 119
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 110/204 (53%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
VE W + + G YLG P G + + + L + ++ G
Sbjct: 114 WVEAQKW----AAIPGNQATYLGAPV-----PWGYLPVILAVEFLSIAFVESQRNG---- 160
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 223
EP P YPGGA FDPL SKDP F+E KVKEIKNGRLA++A++GF +QA A
Sbjct: 161 EPD----PEKRKYPGGA-FDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANP 215
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H+SDP H N+ ++
Sbjct: 216 GTGPLENLATHLSDPWHKNIAEII 239
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 116/211 (54%), Gaps = 32/211 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YLTG L GD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 125 V--PEWYDAGKEQ--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 165
Query: 163 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF LP G++ YPGG +F+PLN + E K KEI NGRLAM+A+LGF
Sbjct: 166 GSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGF 220
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
+Q TGKGP +NLL H+SDP HN ++ +
Sbjct: 221 VVQHNVTGKGPFENLLQHLSDPWHNTIVQTL 251
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 114/217 (52%), Gaps = 31/217 (14%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PE+L
Sbjct: 80 AYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGG 138
Query: 100 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
+G VW+ G QG T DY P + I +M E R
Sbjct: 139 MGVIPESTGLVWFTSGAIPPQG-TFDYWANP----------MTIFWVNMCMMNFAEIKRG 187
Query: 158 ----YCGIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
+ G +A PL G G+ YPGG F+P NL KD +A ++ KE+KNGRL
Sbjct: 188 QDYWFPGSQAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKDDMA--SMQKKEVKNGRL 245
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AM+A+LG +QAA TG+GP +N+ DH++DP N+L+
Sbjct: 246 AMMAFLGCMVQAAVTGEGPWKNICDHVADPFGANMLA 282
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 114/230 (49%), Gaps = 32/230 (13%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD GL +P + + E++H+RWAML
Sbjct: 64 GPDRPVWFPGTSP---PPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAV 120
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G L+PE+L G + E W+ G +Y P + I Q
Sbjct: 121 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFIAQMA 161
Query: 149 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 199
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 162 LMGWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 221
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
KEIKNGRLAM+A++GF+ QA +TG+GPV NLL H++DP H N+ S S
Sbjct: 222 TKEIKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTS 271
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL------SKDPMAFQKYFNFEILHARWA 84
ERP W P +L G LPGD+GFD GL DP + + E++H RWA
Sbjct: 62 NERPLWF--PGSQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWA 119
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGA G +PE L +G + P W G + + I + A ++G I
Sbjct: 120 MLGAAGIFIPEALTKMGILN--TPSWTVAGDADYFTDKTTLFVIELILFAWAEGRRWADI 177
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL--SKDPVAFEELKVKE 202
V P C ++ + P D+ YPGG FDPL + D ++L+ +E
Sbjct: 178 ------VNPGCVN---VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTRE 228
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSM 246
IKNGRLAM+A LG +QA +T GP+ NL+ H+ DP HN + ++
Sbjct: 229 IKNGRLAMLAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTIFAL 272
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 110/204 (53%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
VE W + + G YLG P G + + + L + ++ G
Sbjct: 114 WVEAQKW----AAIPGNQATYLGAPV-----PWGYLPVILAVEFLSIAFVESQRNG---- 160
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 223
EP P YPGGA FDPL SKDP F+E KVKEIKNGRLA++A++GF +QA A
Sbjct: 161 EPD----PEKRKYPGGA-FDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANP 215
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H+SDP H N+ ++
Sbjct: 216 GTGPLENLATHLSDPWHKNIAEII 239
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD GL + P +++ E++H RWAML G LVPE L +
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 116
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P G+ I++ A+ V E R +
Sbjct: 117 AQE-------WAAVPGGQATYLGQPVPW--GTLPTILVIEFLAIAFV--EHQRSMEKD-- 163
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP +E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 164 -------PEKKKYPGGA-FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYP 215
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 216 GTGPLENLATHLADPWHNNIGDII 239
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 105/179 (58%), Gaps = 18/179 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
DP F LKVKEIKNGRLAM + F+I+A TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISG 163
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 116/221 (52%), Gaps = 34/221 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
++ WL +P P YL G LPGD GFD GL++DP + Y E+++ RWAMLG G
Sbjct: 52 KKGEWLPGLPS--PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGM 109
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L+PEV +G + P W+ G ++ + A S + VI + +L
Sbjct: 110 LLPEVFTKIGIIN--APQWYDAGKAE--------------YFASSSTLFVI---EFILFH 150
Query: 152 GPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEI 203
E R+ I+ + IF P + YPGG +F+PLN + E K KEI
Sbjct: 151 YVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGG-IFNPLNFAPT----LEAKEKEI 205
Query: 204 KNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
NGRLAM+A+LGF +Q TGKGP NLL HISDP HN ++
Sbjct: 206 ANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIV 246
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 124/248 (50%), Gaps = 34/248 (13%)
Query: 9 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 68
L SS+ A + E + WL +P P+YL G LPGD GFD GL++DP
Sbjct: 30 LGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLGLAEDPE 87
Query: 69 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 128
+ Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 88 NLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE----------- 134
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGDINYPGG 180
+ A S + VI + +L E R+ I+ ++ IF P + YP G
Sbjct: 135 ---YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-G 187
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
++F+PLN + E K KE+ NGRLAM+A+L F IQ TGKGP NLL H+SDP H
Sbjct: 188 SVFNPLNFAPT----LEAKEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWH 243
Query: 241 NNLLSMVK 248
N ++ +
Sbjct: 244 NTIIQTLS 251
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 114/208 (54%), Gaps = 32/208 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GFD L++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 123 V--PKWYDAGKQE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P ++ YPGG +F+PLN + P A E K KE+ NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTA--EAKEKELANGRLAMLAFLGF 218
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLL 244
+Q TGKGP NLL H+SDP HN ++
Sbjct: 219 IVQHNVTGKGPFDNLLQHLSDPWHNTII 246
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 113/222 (50%), Gaps = 29/222 (13%)
Query: 47 YLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMV 100
YL G LPGD+GFD GL DP + E++H RWAMLG G L PEVL +
Sbjct: 63 YLDGTLPGDFGFDPLGLC-DPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 101 GAFHLV--EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 158
GA E VW+R G G+ Y + +A++M E R+
Sbjct: 122 GAIPASPEEAVWFRSGVIPPAGQYGAYW----------TDAYTLFWVEAIMMNFAELKRW 171
Query: 159 CGIEALEPLG--IFL--------PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
++ G FL G+ YPGG F+ LNL K P A ++L+ EI+NGRL
Sbjct: 172 QDYQSPGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRL 231
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AM+A LG + QA T KGP NLLDH++DP+ NN+L + ++
Sbjct: 232 AMIACLGCFGQAVMTTKGPFANLLDHLADPISNNVLGNLATI 273
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 97/158 (61%), Gaps = 10/158 (6%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 1 MLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWA 57
Query: 145 CQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+K
Sbjct: 58 VQVVLMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELK 110
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
NGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 111 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 105/178 (58%), Gaps = 18/178 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
DP F LKVKEIKNGRLAM + F+IQA TG+GPV++L H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVESLASHLSDPFGNNLLTVIS 162
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 104/179 (58%), Gaps = 18/179 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
DP F LKVKEIKNGRLAM + F+IQA G+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVAGQGPVENLASHLSDPFGNNLLTVISG 163
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 114/220 (51%), Gaps = 48/220 (21%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
P W+ G S+ + A S + VI + +L E R+ I+
Sbjct: 123 --APQWYDAGKSE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKN- 162
Query: 165 EPLGIFLPGDIN----------------YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
PG +N YPG ++F+PLN + E K KE+ NGRL
Sbjct: 163 -------PGSVNQDPIFKQYSLPQHECGYPG-SVFNPLNFAPT----LEAKEKELANGRL 210
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
AM+A+LGF +Q TGKGP +NLL H+SDP HN +++ ++
Sbjct: 211 AMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIR 250
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 106/201 (52%), Gaps = 24/201 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEA 163
E ++ L G YLG P +G + + L + E R +
Sbjct: 115 AQE-------WAALPGGQATYLGNP-----VPRGTLPTVLAIEFLAISFVEHQRSMEKD- 161
Query: 164 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAF 222
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 --------PEKKKYPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAY 212
Query: 223 TGKGPVQNLLDHISDPLHNNL 243
G GP++NL H++DP HNN+
Sbjct: 213 PGTGPLENLATHLADPWHNNI 233
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 111/212 (52%), Gaps = 18/212 (8%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPM-----AFQKYFNF-EILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD GL DP+ K+ + E++H RWAMLGA G + PE+L
Sbjct: 56 AYLDGTLPGDFGFDPLGL-LDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILGA 114
Query: 100 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 158
G VW+ G G Y P I I Q + + RY
Sbjct: 115 AGLIPEKTNIVWYESGVIPPAGSYDGYWADPYTIF-----FIEIVAMQFAELRRLQDFRY 169
Query: 159 CGIEALEPL----GIFL-PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAW 213
G + IF GD YPGG F+ NL K A +ELK+KEIKNGRLAM+A
Sbjct: 170 PGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 229
Query: 214 LGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
LG+ QA T +GP QNLLDH++DP++NN+L+
Sbjct: 230 LGYGAQATLTREGPFQNLLDHLADPVNNNILT 261
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 113/217 (52%), Gaps = 31/217 (14%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PEVL
Sbjct: 96 TYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGG 154
Query: 100 VGAFHL-VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
+G VW++ G QG T DY P I +LM E R
Sbjct: 155 MGIIPADTGLVWFKSGAIPPQG-TFDYWADP----------TTIFWVNMVLMNFAEVKRG 203
Query: 158 ----YCGIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
Y G + PL G G YPGG F+ NL K +A +++ KEIKNGRL
Sbjct: 204 QDYWYPGSQGETPLMGWEKGFAGSGAPAYPGGKYFNFANLGKTDMA--KMQKKEIKNGRL 261
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AM+A+LG +QA TG+GP +N++DHISDP NN+L+
Sbjct: 262 AMMAFLGIAVQAVATGEGPFKNIVDHISDPFANNMLA 298
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 53 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 109
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE L+ +G W+ G + + + + +G + +
Sbjct: 110 ILIPECLERLGFIENFS--WYDAGAQEFFADPTTLFVVQLALMGWVEGR------RWADL 161
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLA 209
+ P C I+ P D+ YPGG FDP + P L+ KEIKNGRLA
Sbjct: 162 INPGCVD---IQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLA 218
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
M+A++GF QA +TG+GP++NL+ HI+DP H N+ S S
Sbjct: 219 MLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTS 258
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GFD L++DP + + E+++ RWA LG G L+PEVL +G +
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 123 V--PKWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P ++ YPGG +F+PLN + EE K +E+ NGRLAM+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----EEAKERELANGRLAMLAFLGF 218
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP NLL H+SDP HN ++ +
Sbjct: 219 IVQHNVTGKGPFDNLLQHLSDPWHNTIVQTLS 250
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 132/257 (51%), Gaps = 32/257 (12%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDV 60
T K ++ ++ K + A + S WYG +R +L D PSYL G+L GDYGFD
Sbjct: 44 TVKKTVKKAAPVKTTVKTA-DLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLAGDYGFDP 102
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
GL D A ++Y E++HARWAML G ++PE L++ G W G L+G
Sbjct: 103 LGLGAD-GAIKQYRVAEVIHARWAMLAVPGIVIPEALNIAGGD------WRETGKVFLEG 155
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 180
T + G L L IA+ ++++G ++ A P G F+P ++ G
Sbjct: 156 STGRF-GPAELWLG-------IAVAPLIVLMG-GAEKFRSDPASAPSG-FVPFKGSFTGK 205
Query: 181 --ALFDPLN---------LSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
A DP+N ++ P E LKVKEIKNGRLAM+A LG ++Q A TG+GP
Sbjct: 206 DFAKLDPINPGGPLDFYNVAATPQDLEILKVKEIKNGRLAMIAMLGVFVQGATTGEGPAA 265
Query: 230 NLLDHISDPLHNNLLSM 246
N H++DP N +++
Sbjct: 266 NWGKHVADPFGYNFVTL 282
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 59 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE + +G +S + +Y P + + Q LM
Sbjct: 116 ILLPEWFESLGLIQ---------NFSWYDAGSREYFADP----------TTLLVAQLALM 156
Query: 151 VGPECARYCGIEALEPLGIFLP--------GDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ + + + L D+ YPGG FDP+ + P L+ K
Sbjct: 157 GWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTK 216
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A++G + QA +TG+GP++NL H++DP H N+ S S
Sbjct: 217 EIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSS 264
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 114/212 (53%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV G +
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
P W+ G S+ + A S + VI + +L E R+ I+
Sbjct: 123 --APQWYDAGKSE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 163
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
+ IF P + YPG ++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 164 GCVNQDPIFKQYSLPPHECGYPG-SVFNPLNFAPT----LEAKEKELANGRLAMLAFLGF 218
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP +NLL H+SDP HN +++ ++
Sbjct: 219 IVQHNVTGKGPFENLLQHLSDPWHNTIINTIR 250
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 25/215 (11%)
Query: 46 SYLTGELPGDYGFDVAGLSK--------DPMAFQKYFNF-EILHARWAMLGALGALVPEV 96
SYL G PGD+G+D GL K DP K+ + E++H R+AMLG G + PE+
Sbjct: 87 SYLDGSKPGDFGYDPLGLYKPEGAGGFIDP----KWLAYSEVIHCRYAMLGMAGMVAPEI 142
Query: 97 LDMVGAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV----IAICQALLMV 151
L +G VW++ G +G+ DY P L L + V++ + Q
Sbjct: 143 LGKLGLIPAETGLVWFKTGVIPSEGQ-YDYWASP-LALFWIEVVLMQFAELRRWQDYRHP 200
Query: 152 GPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
G + +Y G+E GD +YPGGA+F+ L KD + +LK+KE+KNGRLAM
Sbjct: 201 GSQSKQYFLGLEQF----FGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLAM 256
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
VA LGF+IQA TG+GP QNL DH++DP +NN+L+
Sbjct: 257 VATLGFFIQAMATGEGPFQNLTDHLADPFNNNILT 291
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 59 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE + +G +S + +Y P + + Q LM
Sbjct: 116 ILLPEWFESLGLIQ---------NFSWYDAGSREYFADP----------TTLLVAQLALM 156
Query: 151 VGPECARYCGIEALEPLGIFLP--------GDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ + + + L D+ YPGG FDP+ + P L+ K
Sbjct: 157 GWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVLRTK 216
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A++G + QA +TG+GP++NL H++DP H N+ S S
Sbjct: 217 EIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSS 264
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE L +G L P W+ G + +T + + + ++G I
Sbjct: 120 IFIPEFLTKLGI--LNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADI------ 171
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
+ P C + + P D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 172 LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLA 228
Query: 210 MVAWLGFYIQAAFTGKGPVQNLL-DHISDP 238
M+A +G + Q +TG GP+ NL H++DP
Sbjct: 229 MLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats.
Identities = 73/161 (45%), Positives = 92/161 (57%), Gaps = 16/161 (9%)
Query: 88 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 147
ALG L PE+L G E VW++ G Q LDYLG P L +Q ++ CQ
Sbjct: 2614 ALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSL--VHAQNIVATLACQV 2670
Query: 148 LLMVGPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
+LM E R G E L+PL YPG + FDPL L+ DP F ELKVKEIK
Sbjct: 2671 ILMGLVEGYRVNGGPAGEGLDPL---------YPGES-FDPLGLADDPDTFAELKVKEIK 2720
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
NGRLAM + GF++QA TGKGP++NL DH+++P NN +
Sbjct: 2721 NGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFA 2761
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 139 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 189
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 190 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
+ D ++E K KE+KNGRLAM+A LGF Q A TGKGP+ NL DH++DP H N +
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFAT 233
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 139 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 189
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 190 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
+ D ++E K KE+KNGRLAM+A LGF Q A TGKGP+ NL DH++DP H N +
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFAT 233
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 119/242 (49%), Gaps = 37/242 (15%)
Query: 22 ARNESL--WYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A E+L WYG +R +L D PSYL G L GDYGFD GL D A ++Y
Sbjct: 94 AAKEALAKWYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVA 152
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++HARWAML G ++PE L + G VW G L GET G P
Sbjct: 153 EVIHARWAMLAIPGVVIPEALGLPGG------VWTETGKVFLDGET----GRPFFL---- 198
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINY------------PGGALFD 184
+ IV A Q LM G E R G E F+P + PGG L D
Sbjct: 199 ENPIVFAAVQVALMAGVEQFRSSG----EGPAGFVPFKGKFDESAFKGLDPINPGGPL-D 253
Query: 185 PLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
N++ +P LKVKEIKNGRLAM+A LG ++Q TG+GP N H++DP N +
Sbjct: 254 FFNVASNPQDLALLKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFV 313
Query: 245 SM 246
++
Sbjct: 314 TL 315
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ L G YLG P + V+AI + L + E R +
Sbjct: 115 AQE-------WAALPGGQATYLGNP---VPWGTLPTVLAI-EFLAISFVEHQRSMEKD-- 161
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNL 243
G GP++NL H++DP HNN+
Sbjct: 214 GTGPLENLATHLADPWHNNI 233
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 25/215 (11%)
Query: 46 SYLTGELPGDYGFDVAGLSK--------DPMAFQKYFNF-EILHARWAMLGALGALVPEV 96
SYL G PGD+G+D GL K DP K+ + E++H R+AMLG G + PE+
Sbjct: 65 SYLDGSKPGDFGYDPLGLYKPEGAGGFIDP----KWLAYSEVIHCRYAMLGMAGMVAPEI 120
Query: 97 LDMVGAFHL-VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV----IAICQALLMV 151
L +G VW++ G +G+ DY P L L + V++ + Q
Sbjct: 121 LGKLGLIPAETGLVWFKTGVIPSEGQ-YDYWASP-LALFWIEVVLMQFAELRRWQDYRHP 178
Query: 152 GPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
G + +Y G+E GD +YPGGA+F+ L KD + +LK+KE+KNGRLAM
Sbjct: 179 GSQSKQYFLGLEQF----FGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLAM 234
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
VA LGF+IQA TG+GP QNL DH++DP +NN+L+
Sbjct: 235 VATLGFFIQAMATGEGPFQNLTDHLADPFNNNILT 269
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 111/214 (51%), Gaps = 23/214 (10%)
Query: 30 GEERPRWLGPIPYDYPS-YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G ERP W P P+ +L G LPGD+GFD LS DP + E+ HARWAMLG
Sbjct: 36 GAERPVWY---PGKAPAPHLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGV 92
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
GA+ PE+L +G L P W G T Y AG I +A+
Sbjct: 93 AGAVAPELLTKIGVADL--PNWVDAG-------TYQYWAP-----AGPLFFIQMAMFNWA 138
Query: 149 LMVGPECARYCGIEALEPLGIFLPGDIN----YPGGALFDPLNLSKDPVAFEELKVKEIK 204
+ + + G +PL + D N YPGG LFD L +KDP +ELK+KEIK
Sbjct: 139 EVRRWQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGG-LFDKLGYAKDPAKAKELKLKEIK 197
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
NGRLAMVA+LG Q TG+GPV+NL HI+ P
Sbjct: 198 NGRLAMVAFLGICAQYVQTGQGPVENLFSHIASP 231
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 23 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 79
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE L+ +G W+ G + + + + +G + +
Sbjct: 80 ILIPECLERLGFIENFS--WYDAGAQEFFADPTTLFVVQLALMGWVEGR------RWADL 131
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLA 209
+ P C I+ P D+ YPGG FDP + P L+ KEIKNGRLA
Sbjct: 132 INPGCVD---IQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLA 188
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
M+A++GF QA +TG+GP++NL+ HI+DP H N+ S S
Sbjct: 189 MLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTS 228
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 129/262 (49%), Gaps = 43/262 (16%)
Query: 4 TKKAALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 54
T AAL+ S+ K+ LAR E + WL +P P+YL G LPG
Sbjct: 8 TPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPG 65
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
D GFD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G
Sbjct: 66 DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAG 123
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL 171
+ + A S + VI + +L E R+ I+ + IF
Sbjct: 124 KAT--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIFK 166
Query: 172 -----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
P + YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q T KG
Sbjct: 167 SYSLPPHECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNVTQKG 221
Query: 227 PVQNLLDHISDPLHNNLLSMVK 248
P NLL H+SDP HN ++ +
Sbjct: 222 PFDNLLQHLSDPWHNTIIQTLS 243
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 104/178 (58%), Gaps = 18/178 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
DP F LKVKEIKNGRLAM + F+IQA TG+ PV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQCPVENLASHLSDPFGNNLLTVIS 162
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 125/245 (51%), Gaps = 34/245 (13%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 75
A+Q N LW+ ++ +YL G LPGD+GFD GLS DP +
Sbjct: 42 AKQNDNRQLWFASKQSL----------TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRW 90
Query: 76 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGI 128
EI + R AM+G +G + PE L VG LV P W++ G G T Y
Sbjct: 91 LAYGEIFNGRTAMMGVVGMIAPEALGKVG---LVPPETAIPWFQAGAIPPAG-TYQYWAD 146
Query: 129 PGLHLAGSQGVIVIA---ICQALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFD 184
P +I A Q G +Y G+E + GD YPGG +F+
Sbjct: 147 PYTLFVFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKY----LGGSGDPAYPGGPIFN 202
Query: 185 PLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
PL +K +ELK+KEIKNGRLAM+A+LG +QA FTG GP QNLLDH+SDP++NN+
Sbjct: 203 PLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNI 262
Query: 244 LSMVK 248
L+ +K
Sbjct: 263 LTSLK 267
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 117/239 (48%), Gaps = 29/239 (12%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
+ARQ RP W P P++L G L GDYGFD L ++P + Y
Sbjct: 14 GVARQTPRSVRVKAATRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQA 71
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 72 ELVHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF----------- 117
Query: 137 QGVIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLN 187
+ I Q LM E R+ + + G FL + YPGG FDP+
Sbjct: 118 ---PTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTDEFKGLENGYPGGRFFDPMG 174
Query: 188 LSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
LS+ D ++E K KEIKNGRLAM+A LGF Q A TGKGP+ NL DH++DP H N +
Sbjct: 175 LSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFAT 233
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 128/259 (49%), Gaps = 43/259 (16%)
Query: 7 AALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 57
AAL+ S+ K+ LAR E + WL +P P+YL G LPGD G
Sbjct: 11 AALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPGDNG 68
Query: 58 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 117
FD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G +
Sbjct: 69 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAGKAT 126
Query: 118 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL--- 171
+ A S + VI + +L E R+ I+ + IF
Sbjct: 127 --------------YFASSSTLFVI---EFILFHSVEIRRWQDIKNPGCVNQDPIFKSYS 169
Query: 172 --PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
P + YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q T KGP
Sbjct: 170 LPPHECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFD 224
Query: 230 NLLDHISDPLHNNLLSMVK 248
NLL H+SDP HN ++ +
Sbjct: 225 NLLQHLSDPWHNTIIQTLS 243
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 112/213 (52%), Gaps = 32/213 (15%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
ER W P P++L G LPGD+G+D GL+KDP++ +Y E+++ RWAMLG G
Sbjct: 37 ERKLW-APGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGM 95
Query: 92 LVPEVLDMVGAFHLVEPVWWRV--GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
L PE +VG + W V G G L Y G + +
Sbjct: 96 LAPE---LVGQGTWLSAQDWAVTGGKPTYLGNELPY------------GFGTVLAVEFFC 140
Query: 150 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 209
+ E +R G+E +P+ YPGGA FDPL KD V KVKE++NGRLA
Sbjct: 141 LSWVEISR--GLEK-DPMKRI------YPGGA-FDPLGFGKDEVN----KVKELRNGRLA 186
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
MVA++G + Q G GPV NL+DH++DPLHNN
Sbjct: 187 MVAFVGMWCQGIHVGGGPVSNLMDHLADPLHNN 219
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 110/204 (53%), Gaps = 23/204 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L G +
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL---GYGN 110
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
V W + G YLG P + VI + L + E R
Sbjct: 111 WVSAQKW----AATPGGQATYLGNP----VPWGNLPVILAIEFLAIAFAESQRNG----- 157
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 223
EP P YPGGA FDPL SK EELK+KEIKNGRLA+VA+LGF +QA A+
Sbjct: 158 EP----DPEKRKYPGGA-FDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFAVQAIAYP 211
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HN + ++
Sbjct: 212 GTGPLENLKTHLADPWHNTIAHVI 235
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 105/200 (52%), Gaps = 22/200 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ L G YLG P + I + + L + E R +
Sbjct: 116 AQE-------WAALPGGQATYLGNP----VPWGTLPTILVIEFLSIAFVEHQRSMEKD-- 162
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP F E K+KE+KNGRLA++A++G + Q A+
Sbjct: 163 -------PEKKKYPGGA-FDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYP 214
Query: 224 GKGPVQNLLDHISDPLHNNL 243
G GP++NL H++DP HNN+
Sbjct: 215 GTGPLENLATHLADPWHNNI 234
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 110/204 (53%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 116
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P G+ I+ A+ V E R +
Sbjct: 117 AQE-------WAAVPGGQATYLGNPVPW--GTLPTILAIEFLAISFV--EHQRSMEKD-- 163
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++GF + Q+A+
Sbjct: 164 -------PEKKKYPGGA-FDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYP 215
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +++
Sbjct: 216 GTGPLENLAAHLADPWHNNIGNVI 239
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 111/208 (53%), Gaps = 30/208 (14%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G PGD+GFD GL++ P F +Y E++H RWAML G L+PE L G +
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEAL---GLGN 111
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIP----GLHLAGSQGVIVIAICQALLMVGPECARYCG 160
V W + G YLG P L + + + +A +A P+ +
Sbjct: 112 WVSAQQW----AATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEEPDHEKR-- 165
Query: 161 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 220
YPGG FDPL +KDP EE K+KE+KNGRLA++A+LGF +QA
Sbjct: 166 ---------------KYPGGP-FDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQA 209
Query: 221 -AFTGKGPVQNLLDHISDPLHNNLLSMV 247
A+ G GP++NL H+S+P NN+ +++
Sbjct: 210 IAYPGTGPLENLASHLSNPWANNIANII 237
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G PGD+GFD GL+ P +++ E+ H RWAML G LVPE L +
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 85
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G Y G+P + ++AI + L + E R +
Sbjct: 86 AQE-------WAAVPGGQATYFGVP---VPWGNLPTILAI-EFLAIAFAEHQRTMEKD-- 132
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDPV EE K+KEI+NGRLAM+A++GF + Q+ +
Sbjct: 133 -------PEKKKYPGGA-FDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPYP 184
Query: 224 GKGPVQNLLDHISDPLHNNL 243
G GP++NL H++DP HNN+
Sbjct: 185 GTGPLENLASHLADPWHNNI 204
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 123/244 (50%), Gaps = 36/244 (14%)
Query: 9 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 68
L SS+ A R E + WL +P PSYL G L GD GFD GL++DP
Sbjct: 27 LGHSSRLGRTASPTRRSX--KAEAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPE 82
Query: 69 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 128
+ + E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 83 NLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE----------- 129
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL-----PGDINYPGG 180
+ A S + V+ + +L E R+ I+ ++ IF P + YP G
Sbjct: 130 ---YFASSSTLFVV---EFILFXYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-G 182
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
++F+PLN + E K KE+ NGRLAM+A+LGF IQ TGKGP NLL H+SDP H
Sbjct: 183 SVFNPLNFAPT----LEAKEKELANGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWH 238
Query: 241 NNLL 244
N ++
Sbjct: 239 NTII 242
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVK 113
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ G YLG P G+ +I+ A+ V + + E
Sbjct: 114 AQE-------WAATPGGQATYLGQPVPW--GTLPIILAIEFVAIAFVEHQRSMEKDTEKK 164
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
+ YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++G + Q A+
Sbjct: 165 K-----------YPGGA-FDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYP 212
Query: 224 GKGPVQNLLDHISDPLHNNL 243
G GP++NL H++DP HNN+
Sbjct: 213 GTGPLENLATHLADPWHNNI 232
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 124/258 (48%), Gaps = 34/258 (13%)
Query: 5 KKAALQDSSKFKALARQARNESLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGFDV 60
K A ++ + K + + ++S WYG R P L I D PSY+ G L GDYGFD
Sbjct: 85 KAAPVRKAGKASGVNQAGSDKSKWYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDP 144
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
L KD Q Y E+ HARWAML G ++PE L + G W G L G
Sbjct: 145 LQLGKDGKIAQ-YRIAEVQHARWAMLAVPGVVIPEALGVPGGN------WTETGKVFLDG 197
Query: 121 ET--LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA---LEPL-GIFLPGD 174
E + LG P L A + L+ G E R +EA P+ G F D
Sbjct: 198 EAGRPEILGNPYLFTA----------IEVALLAGVEGYRSGKLEAPAGFAPIYGKFEGKD 247
Query: 175 IN-----YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT-GKGPV 228
PGG L D LN++ P LKVKEIKNGRLAM+A LG ++Q A T G+GP
Sbjct: 248 FKGLDPINPGGPL-DFLNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGATTGGEGPA 306
Query: 229 QNLLDHISDPLHNNLLSM 246
N H++DP N +++
Sbjct: 307 TNWAKHVADPFAYNFVTI 324
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 133/270 (49%), Gaps = 40/270 (14%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
++ +A S F+ A ++ LW + PSYL GEL GDYG+D
Sbjct: 20 VVSKARAGPAPRSTFQVSAAASQGRRLWAPG----------VEAPSYLNGELAGDYGWDP 69
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
GL P A + Y E++HARWAML G L E++ G F Y+
Sbjct: 70 LGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIVKP-GVFF----------YNAGLP 118
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQA---LLMVGPECARYCGIEALEPL-------GIF 170
E L PG++ G +G + + A LL E R+ I+ + + G
Sbjct: 119 ENL-----PGINFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQDIKKKDSVNQDPIFKGNK 173
Query: 171 LPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
+P ++ YPGG +FDP SK F+E++ KEIKNGRLAMVA++GF IQA TG+GP+
Sbjct: 174 VPNPELGYPGG-IFDPFGFSKG--NFKEVQTKEIKNGRLAMVAFVGFIIQAQATGQGPLA 230
Query: 230 NLLDHISDPLHNNLLSMVKSMDDPSGCPLE 259
NL H+++P NN+ + + PS ++
Sbjct: 231 NLGAHLANPFGNNITKNIGTCAIPSSVDVQ 260
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 114
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P G+ I++ A+ V E R +
Sbjct: 115 AQE-------WAAIPGGQATYLGQPVPW--GTLPTILVIEFLAIAFV--EHQRSMEKD-- 161
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP F E KVKEIKNGRLA++A++G + Q+A+
Sbjct: 162 -------PEKKKYPGGA-FDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYP 213
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ ++
Sbjct: 214 GTGPLENLATHLADPWHNNIGDII 237
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 111/206 (53%), Gaps = 27/206 (13%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L G +
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL---GYGN 67
Query: 105 LVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
V W + G YLG +P L V IAI A E R
Sbjct: 68 WVSAQKW----AATPGGQATYLGNPVPWGTLPVILAVEFIAIAFA------ESQRN---- 113
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-A 221
G P YPGGA FDP+ SK EELK+KEIKNGRLA+VA+LGF IQA A
Sbjct: 114 -----GESDPEKRKYPGGA-FDPMGFSKG-ANLEELKLKEIKNGRLALVAFLGFAIQAIA 166
Query: 222 FTGKGPVQNLLDHISDPLHNNLLSMV 247
+ G GP++NL H++DP HN + +++
Sbjct: 167 YPGTGPLENLKTHLADPWHNTIANIL 192
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 104/178 (58%), Gaps = 18/178 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE + GA E VW++ L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
++V + + +L+ G E R LE D +PGG FDPL L+K
Sbjct: 60 ------INLVVAVVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
DP F LKVKEIKNGRLAM + F+I+A TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 DPDQFALLKVKEIKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 124/263 (47%), Gaps = 45/263 (17%)
Query: 4 TKKAALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 54
T AAL S+ K+ LAR E + WL +P P+YL G LPG
Sbjct: 8 TPVAALLSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPG 65
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
D GFD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G
Sbjct: 66 DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAG 123
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVI--------AICQALLMVGPECARYCGIEALEP 166
+ + A S + VI I Q + P C I
Sbjct: 124 KAT--------------YFASSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFK--- 166
Query: 167 LGIFLPGD-INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 225
LP D YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q T K
Sbjct: 167 -SYRLPSDECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 226 GPVQNLLDHISDPLHNNLLSMVK 248
GP NLL H+SDP HN ++ +
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLS 243
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 128/259 (49%), Gaps = 43/259 (16%)
Query: 7 AALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 57
AAL+ S+ K+ LAR E + WL +P P+YL G LPGD G
Sbjct: 11 AALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPGDNG 68
Query: 58 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 117
FD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G +
Sbjct: 69 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAGKAT 126
Query: 118 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL--- 171
+ A S + VI + +L E R+ I+ + IF
Sbjct: 127 --------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIFKSYS 169
Query: 172 --PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
P + YP G++F+PLN +P E K KE+ NGRLAM+A+LGF +Q T KGP
Sbjct: 170 LPPHECGYP-GSVFNPLNF--EPTL--EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFD 224
Query: 230 NLLDHISDPLHNNLLSMVK 248
NLL H+SDP HN ++ +
Sbjct: 225 NLLQHLSDPWHNTIIQTLS 243
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 114/211 (54%), Gaps = 32/211 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G LPGD GF GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 12 PTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEVFTNIGILN 71
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + +L E R+ I+
Sbjct: 72 V--PKWYDAGKEE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 112
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P ++ YPGG +F+PLN + P A E K KEI NGRLAM+A+LGF
Sbjct: 113 GSVNQXPIFKNYSLPPNEVGYPGG-IFNPLNFA--PTA--EAKEKEIANGRLAMLAFLGF 167
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
+Q GKGP NLL H+SDP HN ++ +
Sbjct: 168 IVQHNVVGKGPFDNLLQHLSDPWHNTIVQTL 198
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 34/222 (15%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
E + WL +P PSYL G L GD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 47 EAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PEVL G + P W+ G S+ + A S + V+ + +L
Sbjct: 105 MLIPEVLTKAGLIN--APQWYDAGKSE--------------YFASSSTLFVV---EFILF 145
Query: 151 VGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
E R+ I+ ++ IF P + YPG ++F+PLN + E K KE
Sbjct: 146 HYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-SVFNPLNFAPT----LEAKEKE 200
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
+ NGRLAM+A+LGF IQ TGKGP NLL H+SDP HN ++
Sbjct: 201 LANGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTII 242
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 125/245 (51%), Gaps = 34/245 (13%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 75
A+Q N LW+ ++ +YL G LPGD+GF+ GLS DP +
Sbjct: 42 AKQNDNRQLWFASKQSL----------TYLDGTLPGDFGFNPLGLS-DPEGTGGFIEPRW 90
Query: 76 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV----WWRVGYSKLQGETLDYLGI 128
EI + R AM+G +G + PE L VG LV P W++ G G T Y
Sbjct: 91 LAYGEIFNGRTAMMGVVGMIAPEALGKVG---LVPPETAIPWFQAGAIPPAG-TYQYWAD 146
Query: 129 PGLHLAGSQGVIVIA---ICQALLMVGPECARY-CGIEALEPLGIFLPGDINYPGGALFD 184
P +I A Q G +Y G+E + GD YPGG +F+
Sbjct: 147 PYTLFVFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKY----LGGSGDPAYPGGPIFN 202
Query: 185 PLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
PL +K +ELK+KEIKNGRLAM+A+LG +QA FTG GP QNLLDH+SDP++NN+
Sbjct: 203 PLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNI 262
Query: 244 LSMVK 248
L+ +K
Sbjct: 263 LTSLK 267
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 63 DRPLWFPGSAP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 119
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 120 ILIPECLERLGFIENFS--WYEAGSREYFADS-----------------TTLFVAQMVLM 160
Query: 151 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 161 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 220
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A++GF QA +T + P++NL+ H++DP H N+ S S
Sbjct: 221 EIKNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 268
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 10/153 (6%)
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
GA PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L
Sbjct: 1 GASFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQVVL 57
Query: 150 MVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 209
M E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLA
Sbjct: 58 MGAVEGYRVAG----GPLGEIV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLA 110
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
M + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 111 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 143
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G PGD+GFD L + P +++ E++H WAML G LVPE L +
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLGNWVK 110
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E ++ + G YLG P G+ I+ A+ V E R G +
Sbjct: 111 AQE-------WAAVPGGQATYLGNPVPW--GTLPTILAIEFLAISFV--EHQRSMGKD-- 157
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
P YPGGA FDPL SKDP F E KVKE+KNGRLA++A++GF + Q+A+
Sbjct: 158 -------PEKKKYPGGA-FDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYP 209
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +++
Sbjct: 210 GTGPLENLAAHLADPWHNNIGNII 233
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 114/211 (54%), Gaps = 33/211 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
+ P W+ G + + A S + VI + + E R+ I+
Sbjct: 123 V--PKWYAAGKEE--------------YFASSSTLFVIEFILSHYV---EIRRWQDIKNP 163
Query: 163 -ALEPLGIF----LP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF LP G++ YPGG +F+PLN + E K KEI NGRL M+A+LGF
Sbjct: 164 GSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPT----LEAKEKEIANGRL-MLAFLGF 217
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
IQ TGKGP NLL HISDP HN ++ +
Sbjct: 218 IIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 248
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
++PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 121 IIIPECLERLGFIENFS--WYDAGSREYFADS-----------------TTLFVAQMVLM 161
Query: 151 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 162 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A+LGF QA +T + P++NL+ H++DP H N+ S S
Sbjct: 222 EIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
++PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 121 IIIPECLERLGFIENFS--WYDAGSREYFADS-----------------TTLFVAQMVLM 161
Query: 151 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 162 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
EIKNGRLAM+A+LGF QA +T + P++NL+ H++DP H N+ S S
Sbjct: 222 EIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 107/214 (50%), Gaps = 35/214 (16%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD---MVG 101
P +L G +PGDYGFD GL +D +A + Y E+ HARWAMLG G PE++ + G
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEG 111
Query: 102 AF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC- 159
A + E W Y+ P + + Q +M E R+
Sbjct: 112 AMPNWAEAPLWD-----------GYMASPN----------TLFVVQMFMMNWAEVRRWQD 150
Query: 160 ----GIEALEPLGIFLPGDIN----YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 211
G +PL GD N YP G LFDP+ ++KDP + LKVKEI NGRLAMV
Sbjct: 151 MKNPGTMNEDPLTGANKGDTNTDVGYPKG-LFDPMGMAKDPEKVKVLKVKEIANGRLAMV 209
Query: 212 AWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
A +G IQ TG GP+ NL H++DP HN + +
Sbjct: 210 AVMGCIIQNEATGVGPIANLKAHLADPAHNTIFT 243
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 94/154 (61%), Gaps = 10/154 (6%)
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
LG + PE+L G E VW++ G LDYLG P L +Q ++ I Q L
Sbjct: 1 LGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWATQVL 57
Query: 149 LMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKEIKNGRL
Sbjct: 58 LMGAVEGYRVAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRL 110
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AM++ GF++QA TGKGP++NL DH++DP++NN
Sbjct: 111 AMLSMFGFFVQAIVTGKGPLENLADHLADPVNNN 144
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 123/247 (49%), Gaps = 17/247 (6%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 60
M++ A + + KA+ +S G E P+ L D P+ L + G++GFD
Sbjct: 4 MMKRSAVAARPAVSRKAVVTCVARQSWLPGSEIPKHL-----DSPAALA--MAGNFGFDP 56
Query: 61 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 120
GL KD A + Y E++HAR AM G L+P +L GA ++ P W+ G ++
Sbjct: 57 LGLGKDAEALRWYQQAELVHARTAMTAVAGILIPGLLTKAGALNV--PEWYDAGKVAIES 114
Query: 121 ETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR--YCGIEALEPLGIFLPGDINYP 178
+ + + L + G + Q G + + + G E GD YP
Sbjct: 115 SFAPFGALLAVQLFLT-GFVEAKRWQDFKKPGSQAEKGSFLGFET----AFAGTGDNGYP 169
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GG +FDPL LSKD + K+KEIKNGRLAMVA+LGF Q TGKGP+ NL H++DP
Sbjct: 170 GG-IFDPLGLSKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADP 228
Query: 239 LHNNLLS 245
H N S
Sbjct: 229 WHVNYAS 235
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 32/225 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
++PE L+ +G W+ G + ++ + + Q +LM
Sbjct: 121 IIIPECLERLGFIENFS--WYDAGSREYFADS-----------------TTLFVAQMVLM 161
Query: 151 VGPECARYC--------GIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ IE P + D+ YPGG FD + + P L+ K
Sbjct: 162 GWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTK 221
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSM 246
EIKNGRLAM+A+LGF QA +T + P++NL+ H++DP H N+ S+
Sbjct: 222 EIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 111/217 (51%), Gaps = 32/217 (14%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + E++HARWAMLG G
Sbjct: 61 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+PE+L+ +G ++ W+ G +++Y P + I Q LM
Sbjct: 118 ILIPEILEKIG--YVKNFSWYNAG-------SVEYFADP----------TTLFIVQLALM 158
Query: 151 VGPECARYC-----GIEALEPLGIFLPG---DINYPGGALFDPLNLSK-DPVAFEELKVK 201
E R+ G +EP P D+ YPGG FDP+ + P L+ K
Sbjct: 159 GWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTK 218
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
EIKNGRLAM+A+LGF QA + G P+ NL+ H++DP
Sbjct: 219 EIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
+++ I + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVIAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
DP LKVKEIKNGRLAM A LGF+IQA TG+GPV+NL H+
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 113/215 (52%), Gaps = 30/215 (13%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GLS DP + N E++H RWAMLG GA PE +
Sbjct: 76 SYLDGTLPGDYGFDPLGLS-DPEGAGGFINPGWLAYAEVIHGRWAMLGVAGATAPETMK- 133
Query: 100 VGAF--HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR 157
F VW++ G QG + D+ P + + +C +
Sbjct: 134 --GFIPDSTAVVWFKNGIIPAQG-SYDFWAPP-------TALFWVMVCMMNFVEINRLTE 183
Query: 158 YC--GIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
Y G + L G+ G+ YPGG+ F+P+ + K+ + + +KVKEIKNGRLAM
Sbjct: 184 YANPGFRTKQSLAGLEKGMGGTGNPAYPGGS-FNPMGMGKNDM--DAMKVKEIKNGRLAM 240
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
+A+ G +QA TG+GPV+NL DH++DP +NLL+
Sbjct: 241 MAFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLT 275
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 108/204 (52%), Gaps = 26/204 (12%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P+YL G LPG +GFD GL P Q++ E++H+RWAM G GAL E+L
Sbjct: 42 DTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELLG---- 96
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIP-GLHLAGSQGVIVIAICQALLMVGPECARYCGI 161
+ W++ + G YLGIP +L+ + +AI G E R
Sbjct: 97 ----QGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIA------GAEAQRNAEP 146
Query: 162 EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 221
+A + YPGGA FDPL SKD EE K+KE+KNGRLAM+A++GF Q A
Sbjct: 147 DAEK---------RKYPGGA-FDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHA 196
Query: 222 FTGKGPVQNLLDHISDPLHNNLLS 245
TGKGP++ L H++DP N +
Sbjct: 197 ATGKGPLEALKLHLADPWGANFAT 220
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 33/213 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G L GD GFD GL++DP + Y E+++ARWAMLG G LVPEVL +G +
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--- 161
P W+ G S + A S + VI + +L E R+ I
Sbjct: 116 --APQWYDAGKST--------------YFASSSTLFVI---EFILFHYVEIRRWQDIIKN 156
Query: 162 -EALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 215
+ IF P + YPG ++F+PLN +P E K KE+ NGRLAM+A+LG
Sbjct: 157 PGCVNQDPIFKNYSLPPHECGYPG-SVFNPLNF--EPTL--EAKEKELANGRLAMLAFLG 211
Query: 216 FYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
F +Q TGKGP +NLL H+ DP HN ++ +
Sbjct: 212 FMVQHGITGKGPFENLLQHLFDPWHNTIIQTLS 244
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 32/230 (13%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 65 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 121
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G L+PE+L G + E W+ G +Y P + + Q
Sbjct: 122 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFVTQMA 162
Query: 149 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 199
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 163 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 222
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
KEIKNGRLAM+A++GF+ Q +TG+GP+ NL H++DP H N+ S S
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 272
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 32/230 (13%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 62 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 118
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G L+PE+L G + E W+ G +Y P + + Q
Sbjct: 119 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFVTQMA 159
Query: 149 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 199
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 160 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 219
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
KEIKNGRLAM+A++GF+ Q +TG+GP+ NL H++DP H N+ S S
Sbjct: 220 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 269
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 22/221 (9%)
Query: 46 SYLTGELPGDYGFDVAGL----SKDPMAF--QKYFNF-EILHARWAMLGALGALVPEVLD 98
SYL G LPGD+GFD GL S F Q++ + E++HARWAMLGA G L PE L
Sbjct: 12 SYLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYL- 70
Query: 99 MVGAFHLVEP-----VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL---M 150
A V P +W++ G+ DY G+P L + + ++++ + + L
Sbjct: 71 ---AHEKVIPKATGLLWFKTGFLPQASAGFDY-GLP-LGVLFAVQMVMMGVAEGLRGAEY 125
Query: 151 VGPECARYCGIEALEPL-GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLA 209
+ P R + LE L G YPGG +F+PL L + P A E++ EI++GRLA
Sbjct: 126 IAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIRHGRLA 185
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
M+A LG+ QA TG+GP N H+ +P NN+LS++ ++
Sbjct: 186 MLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLLGNV 226
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 116/223 (52%), Gaps = 34/223 (15%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
E + WL +P PSYL G L GD GFD GL++DP + + E+++ RWAMLG
Sbjct: 46 AEAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVA 103
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
G L+PEVL G + P W+ S+ + A S + V+ + +L
Sbjct: 104 GMLIPEVLTKAGLIN--APQWYDASKSE--------------YFASSSTLFVV---EFIL 144
Query: 150 MVGPECARYCGIE---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVK 201
E R+ I+ ++ IF P + YPG ++F+PLN + E K K
Sbjct: 145 FHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-SVFNPLNFAPT----LEAKEK 199
Query: 202 EIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
E+ NGRLAM+A+LGF IQ TGKGP NLL H+SDP HN ++
Sbjct: 200 ELANGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTII 242
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 29/226 (12%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL GEL GDYG+D GL DP+A + Y E++HARWAMLG G LV EV+ F+
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVVKPDVYFY 101
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-----C 159
G + E + + GL + +LM E R+
Sbjct: 102 -------EAGLPQNLPEPFTNVNMGGL-----------LAWEFILMHWVEVRRWQDYKNF 143
Query: 160 GIEALEPL--GIFLPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
G +P+ G +P ++ YPGG +FDPL SK +EL+ KEIKNGRLAMVA++GF
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGG-IFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGF 200
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERMR 262
+QA TGKGP+ L H+S+P NN+L + + P ++ +
Sbjct: 201 VLQAQATGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSVNVQGLE 246
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 124/260 (47%), Gaps = 43/260 (16%)
Query: 1 MLETKKAALQDSSKFKALAR----QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 56
L +K A++ ++ KA A+ + N +W+ PR ++L G LPGD+
Sbjct: 7 FLGSKVASVARATPAKAQAKFVVSASSNRPVWFPGNAPR----------AWLDGSLPGDF 56
Query: 57 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 116
G+D GLS DP + E+ +ARWAMLG G L ++ + VG V+ W+
Sbjct: 57 GYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQ--WYEAPLV 114
Query: 117 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-----GIEALEPLGIFL 171
Q + L + Q +L E R+ G +P G L
Sbjct: 115 DYQADWKTLL-----------------VVQLVLHAWVEGRRWADFHSPGSANADPFGNSL 157
Query: 172 P--GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
P YPGG FDPL SK ELK+KEIKNGRLAMVA LG ++Q + TG P+
Sbjct: 158 PSTATTGYPGGP-FDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLD 214
Query: 230 NLLDHISDPLHNNLLSMVKS 249
NL H++DP H N+ ++ KS
Sbjct: 215 NLAAHLADPGHANIFALDKS 234
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 124/260 (47%), Gaps = 43/260 (16%)
Query: 1 MLETKKAALQDSSKFKALAR----QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 56
L +K A++ ++ KA A+ + N +W+ PR ++L G LPGD+
Sbjct: 11 FLGSKVASVARATPAKAQAKFVVSASSNRPVWFPGNAPR----------AWLDGSLPGDF 60
Query: 57 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 116
G+D GLS DP + E+ +ARWAMLG G L ++ + VG V+ W+
Sbjct: 61 GYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQ--WYEAPLV 118
Query: 117 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-----GIEALEPLGIFL 171
Q + L + Q +L E R+ G +P G L
Sbjct: 119 DYQADWKTLL-----------------VVQLVLHAWVEGRRWADFHSPGSANADPFGNSL 161
Query: 172 P--GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
P YPGG FDPL SK ELK+KEIKNGRLAMVA LG ++Q + TG P+
Sbjct: 162 PSTATTGYPGGP-FDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLD 218
Query: 230 NLLDHISDPLHNNLLSMVKS 249
NL H++DP H N+ ++ KS
Sbjct: 219 NLAAHLADPGHANIFALDKS 238
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 32/230 (13%)
Query: 30 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 88
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 65 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 121
Query: 89 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 148
G L+PE+L G + E W+ G +Y P + + Q
Sbjct: 122 AGILIPEILQKWG--FMEEFSWYTAG-------EREYFADP----------WTLFVTQMA 162
Query: 149 LMVGPECARY--------CGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELK 199
LM E R+ IE P D+ YPGG FD N + P L+
Sbjct: 163 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 222
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
KEIKNGRLAM+A++GF+ Q +TG+GP+ NL H++DP H N+ S S
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTS 272
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 112/217 (51%), Gaps = 31/217 (14%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PE+L
Sbjct: 73 AYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQ 131
Query: 100 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
G VW+ G QG T DY P + I +M E R
Sbjct: 132 AGLIPESTGLVWFTSGAIPPQG-TFDYWANP----------MTIFWVNMCMMNFAEIKRG 180
Query: 158 ----YCGIEALEPL-----GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
Y G +A +PL G G+ YPGG F+ L KD +A +++ KEIKNGRL
Sbjct: 181 QDYWYPGSQAEQPLMGWEKGFAGSGNPAYPGGKYFNFAGLGKDDMA--KMQKKEIKNGRL 238
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AM+A+LG +QA TG+GP +N+ DH++DP N+L+
Sbjct: 239 AMMAFLGCMVQAVVTGEGPWKNICDHVADPFGANMLA 275
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 115/237 (48%), Gaps = 29/237 (12%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
ARQA RP W P P++L G L GDYGFD L ++ + Y E+
Sbjct: 16 ARQAPRAVRAQALTRPVWFPGNPA--PAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAEL 73
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 139 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 189
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLIVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 190 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
+ D + E K KE+KNGRLAM+A LGF Q A TGKGP+ NL DH++DP H N +
Sbjct: 177 RGDAAKYAEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLSDHLADPNHINFAT 233
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 12 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 71
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 72 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 128
Query: 142 IAICQALLMVGPECARYCG 160
I CQ +LM E R G
Sbjct: 129 IWACQVILMGAIEGYRVAG 147
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L ELPGDYGFD L KDP + Y E+ H RWAMLG GA PE+L +G +
Sbjct: 9 PAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEILTNMGISN 68
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI--- 161
L P W E Y G + Q L+M E R+ I
Sbjct: 69 L--PNW---------HEAPSYDGY-------FTDATTLFWVQMLMMNWAEVRRWQDIRKP 110
Query: 162 ----EALEPL-GIFLP-GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 215
E P LP G + YPGG +FDPL +K + + LK KEI NGRLAMVA+ G
Sbjct: 111 GSVSEDPTPFSNAKLPAGVVGYPGG-IFDPLGYAKGDL--KTLKAKEIANGRLAMVAFAG 167
Query: 216 FYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
+Q TG GPV NL+ H++DP HNN+ +
Sbjct: 168 IMVQYDHTGVGPVANLVSHMADPAHNNVFA 197
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 106/207 (51%), Gaps = 28/207 (13%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G L GDYGFD GL +P Y E+ +ARWAMLG G L E+++
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
WW YS E L +++ G I + LLM E R+ I
Sbjct: 100 --PEQWW---YSAGMPENLPSFDGNKVNMGG------ILAWEFLLMHFVEVRRWQDIRKK 148
Query: 165 EPLGI--FLPG------DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
+ + F P ++ YPGG FDPL SK F+E++ KEIKNGRLAMVA++ F
Sbjct: 149 DSVNADPFNPNLKVPNPEMGYPGGP-FDPLGFSKG--NFKEVQTKEIKNGRLAMVAFVAF 205
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNL 243
IQA TGKGP+ NL DH++ P NN+
Sbjct: 206 TIQAQATGKGPLANLTDHLASPFSNNV 232
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 94/160 (58%), Gaps = 10/160 (6%)
Query: 83 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 142
WAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 46 WAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAI 102
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
Q +LM E R G PLG + D YPGG+ FDPL L+ DP AF ELKVKE
Sbjct: 103 WAVQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKE 155
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
IKNGRLAM + GF++QA TGKGP + ++DP++NN
Sbjct: 156 IKNGRLAMFSMFGFFVQAIVTGKGPPREPRRPLADPVNNN 195
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L KAAL F+A A QAR + E+R W P P YL GEL GDYGFD
Sbjct: 4 LVANKAAL----GFRAPA-QARRSVVARAEQRASWFPGNPA--PEYLKGELAGDYGFDPL 56
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG----AFHLVEPVWWRVGYSK 117
G +P + E++H RWAMLGA G L+PE+ + G A L P WW G K
Sbjct: 57 GFGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAG--K 114
Query: 118 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-----GIEAL----EPLG 168
+ E+ + S G + + LLM E R G +A+ PLG
Sbjct: 115 VVAESGPW----------SMGSLTFTMF--LLMGWAEHKRLYDFVKPGSQAVGWAWAPLG 162
Query: 169 I---------FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
+ + + YPGG +FDP +SK+ ++ K E+ NGRLAM A GF Q
Sbjct: 163 LGSITGVEEPLVAKENGYPGG-IFDPFQMSKNEAKYKWYKQSEVTNGRLAMTAMFGFVSQ 221
Query: 220 A-AFTGKGPVQNLLDHISDP 238
A+ GKGP+ NL+DH+S+P
Sbjct: 222 HIAYPGKGPIDNLVDHVSNP 241
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 110/204 (53%), Gaps = 23/204 (11%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L G +
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL---GYGN 67
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
V W + G YLG P G+ +I+ A+ V E R
Sbjct: 68 WVSAQKW----AATPGGQATYLGNP--VPWGNLPIILAVEFIAIAFV--ESQRN------ 113
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFT 223
G P YPGG FDPL SK EELK+KEIKNGRLA+VA+LGF +QA A+
Sbjct: 114 ---GESDPEKRKYPGGP-FDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFVVQAVAYP 168
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HN + ++
Sbjct: 169 GTGPLENLKTHLADPWHNTIAHVL 192
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 124/265 (46%), Gaps = 49/265 (18%)
Query: 4 TKKAALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 54
T AAL+ S+ K+ LAR E + WL +P P+YL G LPG
Sbjct: 8 TPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPG 65
Query: 55 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
D GFD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G
Sbjct: 66 DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAG 123
Query: 115 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE---ALEPLGIFL 171
+ + A S + VI + +L E R+ I+ + IF
Sbjct: 124 KAT--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGCVNQDPIFK 166
Query: 172 -----PGDINYPGGALFDPLNLSKDPVAFE---ELKVKEIKNGRLAMVAWLGFYIQAAFT 223
P + YP S P+ FE E K KE+ NGRLAM+A+LGF +Q T
Sbjct: 167 SYSLPPHECGYPAA--------SSTPLNFEPTLEAKEKELANGRLAMLAFLGFLVQHNVT 218
Query: 224 GKGPVQNLLDHISDPLHNNLLSMVK 248
KGP NLL H+SDP HN ++ +
Sbjct: 219 QKGPFDNLLQHLSDPWHNTIIQTLS 243
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
K A + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKN 96
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 134 AGSQGVIVIAICQALLMVGPECARYC 159
A Q ++ I Q LLM G + C
Sbjct: 156 A--QSILAIWATQVLLMGGRRGYKGC 179
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 85/136 (62%), Gaps = 9/136 (6%)
Query: 107 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP 166
E VW++ G LDYLG P L +Q ++ I CQ +LM E R G P
Sbjct: 15 EAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRIAG----GP 68
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
LG D YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKG
Sbjct: 69 LGEVT--DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 125
Query: 227 PVQNLLDHISDPLHNN 242
P++NL DH++DP++NN
Sbjct: 126 PLENLADHLADPVNNN 141
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
+YL G LPGD+GFD GLS DP + EI + R AM+G +G + PE L
Sbjct: 58 TYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGK 116
Query: 100 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA---ICQALLMVGPECA 156
VG + W + T Y P +I A Q G
Sbjct: 117 VGLVPSETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDWYNPGSMGK 176
Query: 157 RY-CGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWL 214
+Y G+E + GD YPGG +F+PL +K +ELK+KEIKNGRLAM+A+L
Sbjct: 177 QYFLGLEKY----LGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAFL 232
Query: 215 GFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
G +QA FTG GP QNLLDH+SDP++NN+L+ +K
Sbjct: 233 GMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLK 266
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 117/217 (53%), Gaps = 35/217 (16%)
Query: 52 LPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHL 105
LPGDYGFD GLS DP + E+++ R+AMLGA+GA+ PE+ +G +
Sbjct: 6 LPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMG---I 61
Query: 106 VEPV----WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY--- 158
+ P W++ G G T +Y A S + V + LM E R
Sbjct: 62 IPPETALPWFKTGVIPPAG-TYNYW-------ADSYTLFVFNMA---LMGFAEHRRLQDW 110
Query: 159 -----CGIEALEPLGIFL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 211
G + L FL GD +YPGG LF+PL K ELK+KEIKNGRLAM+
Sbjct: 111 YNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAML 170
Query: 212 AWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
A LG++IQ TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 171 AILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLK 207
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 37 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 96
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 144
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 97 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 153
Query: 145 CQALLMVGPECARYCG 160
Q +LM E R G
Sbjct: 154 SQVVLMGFVEGYRVGG 169
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 112/242 (46%), Gaps = 42/242 (17%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGL--------------------------S 64
+RP W G P P +L G LPGD+GFD GL +
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTA 118
Query: 65 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 124
DP + + E++H RWAMLGA G +PE L +G L P W+ G + +T
Sbjct: 119 SDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAGEQEYFTDTTT 176
Query: 125 YLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFD 184
+ + + ++G I + P C + + P D+ YPGG FD
Sbjct: 177 LFIVELIFIGWAEGRRWADI------LNPGCVN---TDPIFPNNKLTGTDVGYPGGLWFD 227
Query: 185 PLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
PL S P +EL+ KEIKNGRLAM+A +G + Q +TG GP+ NL H++DP H +
Sbjct: 228 PLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 287
Query: 244 LS 245
+
Sbjct: 288 FA 289
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 122/254 (48%), Gaps = 30/254 (11%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L +AA+ + AR+ + ER WL + PSYL GELPGD+GFD
Sbjct: 7 LHASRAAILRHLELLLTVSAARSARVVVRAERASWLPG--SEIPSYLKGELPGDFGFDPL 64
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
L +DP A + Y E+ + RWAML A G L ++L +GA W +
Sbjct: 65 RLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGAGGPAAATPW------FKAS 118
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC-----GIEALEPL--GIFLPG- 173
Y + I + LL E RY G +P+ LP
Sbjct: 119 DFTYFAP----------TSTLFIVELLLFAWVEVRRYQDMVKPGSTNQDPIFSQYSLPSG 168
Query: 174 -DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
+ YPGG +FDPL SK +A ELK+KEIKN RLAM+A LGF++QA TGK P+ +L
Sbjct: 169 NEPGYPGG-IFDPLGYSKGNMA--ELKLKEIKNARLAMLAVLGFFVQAKTTGKTPLDSLS 225
Query: 233 DHISDPLHNNLLSM 246
H++DP NN+ +
Sbjct: 226 SHLADPWSNNVFGI 239
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 105/203 (51%), Gaps = 26/203 (12%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P++L +LPG+YGFD L KDP + +++ E++H RWAMLG GAL E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELLGYGNW 103
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
+ P+W + G + GI + + A V A +
Sbjct: 104 YD--APLW------AVTGGKATWFGI--------EVPFDLNTLLAFEFVAMAAAEGQRND 147
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
A G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 148 A---------GGVIYPGGA-FDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAA 197
Query: 223 TGKGPVQNLLDHISDPLHNNLLS 245
TGKGP+ L +H+++P N +
Sbjct: 198 TGKGPLAALGEHLANPWGANFAT 220
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 47 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
MLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 107 MLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEGGLDYLGNPNL 152
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 22/204 (10%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P++L G P GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 31 PAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 90
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
E G + G + + +P + LA I A Q + PE +Y
Sbjct: 91 AQEWAALPDGQATYLGNPVPWGNLPTI-LAIEFLAIAFAEQQRTMEKDPEKKKY------ 143
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFT 223
PGGA FDPL SKDP FEELK+KEIKNGRLAM+A++GF + Q+A+
Sbjct: 144 -------------PGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 189
Query: 224 GKGPVQNLLDHISDPLHNNLLSMV 247
G GP++NL H++DP HNN+ +V
Sbjct: 190 GTGPLENLATHLADPWHNNIGDIV 213
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 54 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 113
GD+GFD GL + P ++Y E++H RWAML G LVPE L E
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQE------ 54
Query: 114 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 173
++ + G YLG P G+ I++ A+ V E R + P
Sbjct: 55 -WAAVPGGQATYLGNP--VPWGTLPTILVIEFLAIAFV--EHQRSMEKD---------PE 100
Query: 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFTGKGPVQNLL 232
YPGGA FDPL SKDP FEELKVKEIKNGRLA++A++GF + Q+A+ G GP++NL
Sbjct: 101 KRKYPGGA-FDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 159
Query: 233 DHISDPLHNN 242
H++DP HN
Sbjct: 160 THLADPWHNK 169
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 37/238 (15%)
Query: 30 GEERPRWLGPIPYDYP---------SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80
G+E P+P D P ++L G LPGD+GFD GL DP + + E++H
Sbjct: 52 GKEVSSVCEPLPPDRPYGSLVALHLNWLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIH 111
Query: 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 140
+RWAML G ++PE L+ +G W+ G + ++
Sbjct: 112 SRWAMLAVTGIIIPECLERLGFIENFS--WYDAGSREYFADS-----------------T 152
Query: 141 VIAICQALLMVGPECARYCG--------IEALEPLGIFLPGDINYPGGALFDPLNLSK-D 191
+ + Q +LM E R+ IE P + D YPGG FD + +
Sbjct: 153 TLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDAGYPGGLWFDFMMWGRGS 212
Query: 192 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
P L+ KEIKNGRLAM+A+LGF QA +T + P++NL+ H++DP H N+ S S
Sbjct: 213 PEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 270
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 85/136 (62%), Gaps = 9/136 (6%)
Query: 107 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP 166
E VW++ G LDYLG P L A Q ++ I Q +LM E R G P
Sbjct: 6 EAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAVQVVLMGAVEGYRIAG----GP 59
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
LG + D YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKG
Sbjct: 60 LGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 116
Query: 227 PVQNLLDHISDPLHNN 242
P++NL DH++DP++NN
Sbjct: 117 PLENLADHLADPVNNN 132
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 100/220 (45%), Gaps = 61/220 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
+PE+L +G + +P+ P L G+
Sbjct: 129 IFIPELLTKLGILN-TDPI------------------FPNNKLTGT-------------- 155
Query: 151 VGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLA 209
D+ YPGG FDPL S P +EL+ KEIKNGRLA
Sbjct: 156 -----------------------DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLA 192
Query: 210 MVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
M++ +G + QA +TG GP+ NLL H++DP H + + S
Sbjct: 193 MLSVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 232
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 51 ELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFH 104
LPGDYGFD GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 105 LVEPV-WWRVGYSKLQGETL---DYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-C 159
+ W++ G G D + L +A G Q G +Y
Sbjct: 73 AETALPWFQTGVIPPAGTYTYWADNYTLFVLEMA-LMGFAEHRRLQDWYNPGSMGKQYFL 131
Query: 160 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
G+E G+ G+ YPGG F+PL KD + +ELK+KE+KNGRLAM+A LG++IQ
Sbjct: 132 GLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 187
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
TG GP QNLLDH++DP++NN+L+ +K
Sbjct: 188 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 216
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 26/203 (12%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 103
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
+ P+W + G + GI V ALL + +
Sbjct: 104 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF-----EFVAMA 139
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
A E G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 140 AAEGQ-RGDAGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 197
Query: 223 TGKGPVQNLLDHISDPLHNNLLS 245
TGKGP+ L +H+++P N +
Sbjct: 198 TGKGPIAALGEHLANPWGANFAT 220
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 26/203 (12%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 40 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 99
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
+ P+W + G + GI V ALL + +
Sbjct: 100 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF-----EFVAMA 135
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
A E G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 136 AAEGQ-RGDAGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 193
Query: 223 TGKGPVQNLLDHISDPLHNNLLS 245
TGKGP+ L +H+++P N +
Sbjct: 194 TGKGPIAALGEHLANPWGANFAT 216
>gi|302832608|ref|XP_002947868.1| chlorophyll a/b-binding protein [Volvox carteri f. nagariensis]
gi|300266670|gb|EFJ50856.1| chlorophyll a/b-binding protein [Volvox carteri f. nagariensis]
Length = 151
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 69/95 (72%)
Query: 156 ARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 215
RY GI +LEP+G+FLPGD NYPGG FDPLN + D F + V+EIKNGRLAMVA LG
Sbjct: 51 GRYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAMLG 110
Query: 216 FYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
++QAA T KGPV+N+++ +SDP N+ + V +
Sbjct: 111 LFVQAAVTKKGPVENVMEFVSDPAGENIFTNVARL 145
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 115/225 (51%), Gaps = 29/225 (12%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL GEL GDYG+D GL DP A + Y E+ HARWAMLG G LV E++ F+
Sbjct: 30 PEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIVKPDVYFY 89
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-----C 159
G + E + + GL + +LM E R+
Sbjct: 90 -------EAGLPQNLPEPFTNINMGGL-----------LAWEFILMHWVEVRRWQDYKNF 131
Query: 160 GIEALEPL--GIFLPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
G +P+ G +P ++ YPGG +FDP SK F+EL+ KEIKNGRLAM+A++ F
Sbjct: 132 GSVNEDPIFKGNKVPNPEMGYPGG-IFDPFGFSKG--DFKELQTKEIKNGRLAMIAYMAF 188
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLERM 261
+QA TGKGP+ L H+S+P NN+L + + P ++ +
Sbjct: 189 ILQAQATGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSVDVQGL 233
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 89/162 (54%), Gaps = 16/162 (9%)
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
+ PE+L G EPVW++ G Q L+YLG P L A Q ++ Q +LM
Sbjct: 1 VTPELLAANGV-SFGEPVWFKAGAQIFQDGGLNYLGNPSLIHA--QNIVATLAVQVILMG 57
Query: 152 GPECARYCGI---EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
E R G E L+PL YPG A FDPL L+ DP F ELKVKEIKNGRL
Sbjct: 58 LVEGYRMNGGPAGEGLDPL---------YPGEA-FDPLGLADDPDTFAELKVKEIKNGRL 107
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
AM + GF++QA TGKGP+QNL DH+++P NN +
Sbjct: 108 AMFSCFGFFVQAIVTGKGPIQNLTDHLANPAENNAFAFATKF 149
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 105/203 (51%), Gaps = 26/203 (12%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P++L +LPG+YGFD L KDP + +++ E++H RWAMLG G+L E+L
Sbjct: 8 DAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 67
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
+ P+W + G + GI + + + + M E R
Sbjct: 68 YD--APLW------AVNGGKATWFGIDVPF-----DLNTLLAFEFVAMAAAEGQRGDA-- 112
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
G + YPGGA FDPL +KD ELK+KE+KNGRLAMVA+LGF Q A
Sbjct: 113 ----------GGVVYPGGA-FDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAA 161
Query: 223 TGKGPVQNLLDHISDPLHNNLLS 245
TGKGP+ L +H+S+P N +
Sbjct: 162 TGKGPIAALGEHLSNPWGANFAT 184
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 104/208 (50%), Gaps = 33/208 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G + GDYGFD GL +D +A Q Y E++HARWAMLG G PE+
Sbjct: 52 PKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGMAAPEL-------- 103
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGL--HLAGSQGVIVIAICQALLMVGPECARYCGIE 162
VG + G ++ P ++A + + V+ Q M E R+ ++
Sbjct: 104 --------VGNPFVDGPLPNWAEAPFFDGYIADANTLFVV---QMFFMNWAEVRRWQDMK 152
Query: 163 ALEPLGIFLP----------GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 212
P + D+ YPGG LF+P+ ++K + L+ KEI NGRLAMVA
Sbjct: 153 --NPGSVHADPYDENRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMVA 210
Query: 213 WLGFYIQAAFTGKGPVQNLLDHISDPLH 240
+G +IQ TG GPV NL HI+DP+H
Sbjct: 211 AMGCFIQHDVTGTGPVANLKAHIADPVH 238
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 104/214 (48%), Gaps = 37/214 (17%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P +L G +PGDYGFD GL +D A Y E++HARWAMLG G PE+
Sbjct: 51 PKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIF------- 103
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIP--GLHLAGSQGVIVIAICQALLMVGPECARYCGI- 161
G + G ++ P ++A + + V+ Q LM E R+ +
Sbjct: 104 ---------GNPLVDGPLPNWADAPFYDGYIADANTLFVV---QMFLMNWAEVRRWQDMK 151
Query: 162 -----------EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
E+ + G D+ YPGG LF+P+ ++K + L+ KEI NGRLAM
Sbjct: 152 NPGSVHADPYDESRKCTGT----DVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAM 207
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
VA +G +IQ TG GPV NL H++DP H +
Sbjct: 208 VAAMGCFIQHDVTGTGPVANLKAHLADPAHATIF 241
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 84/137 (61%), Gaps = 15/137 (10%)
Query: 109 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EALE 165
VW++ G LDYLG P +L +Q ++ I CQ +LM E R G E L+
Sbjct: 2 VWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLD 59
Query: 166 PLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 225
PL YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGK
Sbjct: 60 PL---------YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGK 109
Query: 226 GPVQNLLDHISDPLHNN 242
GP++NL DH++DP NN
Sbjct: 110 GPIENLYDHLADPSTNN 126
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 25/220 (11%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
+RP W G P P +L G LPGD+GFD GL DP + + +++H RWAMLGA G
Sbjct: 58 DRPIWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAG 114
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG-----VIVIAIC 145
+PE L +G L P W+ G + +T I + + ++G +I+ C
Sbjct: 115 IFIPEFLTKIGI--LNTPSWYTAGEHQYFTDTTTLFIIELILIGWAEGRRWADIIINPGC 172
Query: 146 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK-DPVAFEELKVKEIK 204
+ P+ + G EP G++L DPL P +EL+ KEIK
Sbjct: 173 VNTDPIFPQ-QQVHGHRRGEPCGLWL------------DPLGWGTVSPEKIKELRTKEIK 219
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
NGR+AM+A +G + QA TG GP+ N H++DP H +
Sbjct: 220 NGRVAMLAVMGAWFQAEHTGTGPIDNFFAHVADPGHATIF 259
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 107/206 (51%), Gaps = 25/206 (12%)
Query: 41 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 100
P P +LPG++ FD L K+ Q+Y E++H RWAMLGA G L EVL +
Sbjct: 39 PGSEPKEYLNDLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGLG 98
Query: 101 GAFHLVEPVWWRVGYSKLQGETLDYLGIP-GLHLAGSQGVIVIAICQALLMVGPECARYC 159
+ P+W + G+ + GI +A GV V+A+ A E R
Sbjct: 99 NWYD--APLW------AVTGDKPTWFGIEVPFDIATILGVEVVAMAVA------EGLRND 144
Query: 160 GIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219
+ + L YPGGA FDPL SKDP +FE+ K+KE+KNGRLAMVA LGF Q
Sbjct: 145 NQDMEKRL---------YPGGA-FDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQ 194
Query: 220 AAFTGKGPVQNLLDHISDPLHNNLLS 245
A TGK ++ L DH+S P NN +
Sbjct: 195 HAATGKPILEALGDHLSSPFFNNFAT 220
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 105/189 (55%), Gaps = 22/189 (11%)
Query: 53 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 112
PGD+GFD GL + P ++Y E++H RWAML G LVPE L G + V+ W
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGNWVKAQEW- 58
Query: 113 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLP 172
+ L G YLG P + ++AI + L + E R + P
Sbjct: 59 ---AALPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKD---------P 102
Query: 173 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI-QAAFTGKGPVQNL 231
YPGGA FDPL SKDP EELKVKEIKNGRLA++A++GF + Q+A+ G GP++NL
Sbjct: 103 EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 161
Query: 232 LDHISDPLH 240
H++DP H
Sbjct: 162 ATHLADPWH 170
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 119/259 (45%), Gaps = 36/259 (13%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGFD 59
KKAA S K ++ + + WYG+ R P L D PSY+ G L GDYGFD
Sbjct: 59 VKKAAPVKKSSGKP-SQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFD 117
Query: 60 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 119
L D Y E++HARWAML G ++PE L + G VW G L
Sbjct: 118 PLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGIPGG------VWTETGKVFLD 170
Query: 120 GETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINY-- 177
GE G P + Q I+ A Q L E R + E F+PG +
Sbjct: 171 GEA----GRPEIL----QNPIIFAGIQIALFAAVEGYRSGKVAPPEG---FVPGKGKFSG 219
Query: 178 ----------PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
PGG L D N++ P LKVKEIKNGRLAM+A LG ++Q TG+GP
Sbjct: 220 SDFAGLDPINPGGPL-DFFNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGLTTGEGP 278
Query: 228 VQNLLDHISDPLHNNLLSM 246
N H++DP N +++
Sbjct: 279 AANWGKHVADPFGYNFVTI 297
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 28 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 86
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 87 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 146
GALG + P++L G E +W++ G Q LDYLG L L +Q ++ CQ
Sbjct: 97 GALGCVTPKLLSKNG-VQFSEALWFKAGAQIFQEGGLDYLG--NLSLVHAQNIVATLACQ 153
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 117/225 (52%), Gaps = 31/225 (13%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 91
+RP W IP PSYL G LPGD+G+D LS P + E+ +ARWAMLG G
Sbjct: 42 DRPLWCPGIPA--PSYLDGSLPGDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGM 99
Query: 92 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV 151
L ++L G P W+ D + ++ A + + +I Q +LM
Sbjct: 100 LSVDLLQ--GILPDNVPQWY------------DAPLLADVYPAEWKSLFII---QMILMG 142
Query: 152 GPECARYCGIEA-----LEPL--GIFLP--GDINYPGGALFDPLNLSKDPVAFEELKVKE 202
E R+ I ++P+ LP G YPGG +FDPL SK EE K KE
Sbjct: 143 FVEARRWADINTPGSANVDPVFNNNKLPDSGTPGYPGG-MFDPLGFSKG--NLEESKWKE 199
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
++NGRLAMVA LG +IQ TGK P+ NL DH++DP HNN+ +++
Sbjct: 200 LRNGRLAMVASLGMFIQYDATGKSPLTNLADHLADPWHNNVCALL 244
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 93/166 (56%), Gaps = 18/166 (10%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA GA++PE + GA E VW++ G L G TL Y G IP ++V
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIP-------INLVVA 53
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
I + +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 54 VIAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAAILKVKE 104
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
IKNGRLAM + F+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 IKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 150
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 26 SLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
S WYG R P L I D PSYL G L GDYGFD L KD ++Y E++HA
Sbjct: 82 SKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHA 140
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 141
RWAML G ++PE L + G VW G L GE G P + Q +
Sbjct: 141 RWAMLAIPGIVIPEALGIPGG------VWTETGKVFLDGEA----GRPEIL----QNPYL 186
Query: 142 IAICQALLMVGPECARYCGIEALEPL----GIFLPGDIN-----YPGGALFDPLNLSKDP 192
A Q L E R A + G F D + PGG L D N++ P
Sbjct: 187 FAAIQIGLFAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPINPGGPL-DFFNVAATP 245
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSM 246
LKVKEIKNGRLAM+A LG ++Q TG+GP N H++DP N +++
Sbjct: 246 DDLAVLKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTI 299
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 3/138 (2%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 79
+++ + ++ YG +R +LGP PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 48 KKSSSGNIRYGADRLLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 107
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 108 HSRWAMLGALGCVTPELLAKNG-VKFGEAVWFKAGSQIFADGGLDYLGNPSLVHA--QSI 164
Query: 140 IVIAICQALLMVGPECAR 157
+ I CQ +LM E R
Sbjct: 165 LAIWACQVILMGAVEGYR 182
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 108/206 (52%), Gaps = 12/206 (5%)
Query: 39 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 98
P D PS L G++GFD GL KDP+A Y E++H R AM G G L+P +L
Sbjct: 31 PAHLDTPS--AQALAGNFGFDPLGLGKDPVALAWYQQAELIHCRTAMTGVAGILIPGLLT 88
Query: 99 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGP--ECA 156
GA ++ P W+ G ++ + + + L G + + Q + G E
Sbjct: 89 KAGALNV--PEWYDAGKVAIENSFAPWGTLLAVQLFLC-GFVEVKRWQDIRKPGSQGEPG 145
Query: 157 RYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
+ G E+ + ++ YPGG FDPL LSK+ + + K+KE+KNGRLAM+A+LGF
Sbjct: 146 SFLGFES----SLKGTSEVGYPGGP-FDPLGLSKEADKWADWKLKEVKNGRLAMLAFLGF 200
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNN 242
Q TG GPV NL+ H+ DP H N
Sbjct: 201 VAQKYATGAGPVDNLVAHLKDPWHVN 226
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 118/220 (53%), Gaps = 29/220 (13%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GL DP + + EI++ R+AMLGA GA+ PE+L
Sbjct: 18 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEILGR 76
Query: 100 VGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
+G + W++ G G Y P + + + LM E R
Sbjct: 77 IGLIPQETAIPWFQSGVIPPVG-NYSYWADP----------YTLFVLELALMGFAEHRRA 125
Query: 158 -------YCGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
G + L FL G N YPGG +F+ L K+ +ELK+KEIKNGRL
Sbjct: 126 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELKELKLKEIKNGRL 185
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
AM+A LG++IQA FTG GP QNLLDH++DP+HNN+L+ +K
Sbjct: 186 AMMAVLGYFIQAIFTGVGPFQNLLDHLADPVHNNVLTNLK 225
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 109/214 (50%), Gaps = 12/214 (5%)
Query: 33 RPRWL--GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
R WL IP + L G++GFD GL KDP+A + Y E++H R AM G G
Sbjct: 27 RQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQAELIHCRTAMAGVAG 86
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
L+P +L GA ++ P W+ G ++ + + + L G + Q +
Sbjct: 87 ILIPGLLTKAGALNV--PEWYDAGKVAIENSFAPWGSLLAVQLFLC-GFVEAKRWQDIRK 143
Query: 151 VGP--ECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
G E + G EA + ++ YPGG FDPL LSK+ + + K+KE+KNGRL
Sbjct: 144 PGSQGEPGSFLGFEA----SLKGTSELGYPGGP-FDPLGLSKEADKWADWKLKEVKNGRL 198
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AM+A+LGF Q TG GPV NL H+ DP H N
Sbjct: 199 AMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVN 232
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLG P L +Q ++ I CQ +LM E R G PLG + D YPGG+
Sbjct: 3 LDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYPGGS- 53
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L++DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 54 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 113
Query: 243 LLSMVKSM 250
S +
Sbjct: 114 AWSYATNF 121
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 108/220 (49%), Gaps = 40/220 (18%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GLS DP + N E++H RWAMLG G + PEVL
Sbjct: 60 SYLDGSLPGDYGFDPLGLS-DPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGG 118
Query: 100 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECAR- 157
+G VW++ G QG T DY P I A LM E R
Sbjct: 119 MGIIPQETGLVWFKAGMIPAQG-TYDYWASP----------FTIFWINAFLMNIAELRRA 167
Query: 158 -------------YCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIK 204
+ G+E + + GD YPGG F+ + + +A +K KEIK
Sbjct: 168 QDYWNPGSMGKQDFAGLEKM----LGGSGDPAYPGG-FFNFMKQGEKDMA--AMKTKEIK 220
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
NGRLAM+A G QA TG+GPV+NL+DH+ DP +NLL
Sbjct: 221 NGRLAMMACFGCGAQACMTGEGPVKNLVDHVIDPFGHNLL 260
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 22 ARNESLWYGEERPRWLGPIPY------DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
A+N WYG R +L P D P+YLTG+L GDYG+D GL KDP QKY
Sbjct: 58 AQNLDKWYGPSRVLFL---PSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRA 114
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 135
FE++HARWAML A G ++PE L GA + W+ G L G TL+Y +P ++
Sbjct: 115 FELIHARWAMLAAAGMIIPEGLAANGA-DIKGATWFETGAEMLNGGTLNYFAVPWAIVSN 173
Query: 136 SQGVIVIAICQALLMVGPECARYCGI--EALEP------LGIFLPGDINYPGGALFDPLN 187
+ I + LM E R G + P +F D +PGG FDPL
Sbjct: 174 PLPLFAIVAVEVGLMGAAENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGP-FDPLG 232
Query: 188 LSKDPVAFEELKV 200
L+ DP F+ELKV
Sbjct: 233 LADDPEVFQELKV 245
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 29/223 (13%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P YL G+L GDYG+D GL DP A + Y E+ HARWAMLG G LV E++ F+
Sbjct: 42 PEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIVKPDVYFY 101
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
G + E + + GL + +LM E R+ +
Sbjct: 102 -------EAGLPQNLPEPFTNINMGGL-----------LAWEFILMHWVEVRRWQDYKNF 143
Query: 165 -----EPL--GIFLPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
+P+ G +P ++ YPGG +FDP SK +EL+ KEIKNGRLAM+A++ F
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGG-IFDPFGFSKG--NLKELQTKEIKNGRLAMIAYMAF 200
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCPLE 259
+QA TGKGP+ L H+S+P NN+L + + P ++
Sbjct: 201 ILQAQATGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSVDVQ 243
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 109/216 (50%), Gaps = 32/216 (14%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 99
SYL G LPGDYGFD GLS DP + N E++H RWAMLG G + PEVL
Sbjct: 69 SYLDGSLPGDYGFDPLGLS-DPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGG 127
Query: 100 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY 158
+G VW++ G QG T DY P I A LM E R
Sbjct: 128 LGIIPQETGLVWYKAGMIPAQG-TYDYWANP----------FTIFWINAALMNFAELRRA 176
Query: 159 ------CGIEALEPLG----IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
+ E +G + G+ YPGG F+ + K +A +++VKEIKNGRL
Sbjct: 177 QDYWNPGSMGKQELIGWEKMLGGSGEPAYPGG-FFNIMGQGKSDMA--KMRVKEIKNGRL 233
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
AM+A QA TG+GPV+NL+DH+SDP +NLL
Sbjct: 234 AMMACFACGAQAVMTGEGPVKNLIDHVSDPFGHNLL 269
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L +K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LVSKMGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 83
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G + E
Sbjct: 84 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG-VKFGEAVWFKAGRRYSRRE 142
Query: 122 TLDYLGIP 129
G P
Sbjct: 143 ASTTWGTP 150
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 114/241 (47%), Gaps = 29/241 (12%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
L+T+ A +S+ + +WY + P ++L G LPGDYGFD
Sbjct: 13 LKTRVATKTRASRGPVAVSANADRPVWYPGKAPA----------AHLDGSLPGDYGFDPL 62
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
LS DP Q E+ HARWAMLG G + PE+L +G L P W +
Sbjct: 63 SLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGVADL--PNW-------VDAA 113
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDIN----Y 177
T Y PG G+ I +A+ + + + G +PL + D N Y
Sbjct: 114 TYQYWA-PG----GTLFFIQMAMFNWAEIRRWQDMKNPGSVNTDPLFGYNSNDTNTDVGY 168
Query: 178 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISD 237
P G LFD +KD ELK+KEIKNGRLAM+A+LG Q TG GPV+NL H+ +
Sbjct: 169 PKG-LFDKFGWAKDEKTTAELKLKEIKNGRLAMLAFLGICAQYVQTGVGPVENLFSHMGN 227
Query: 238 P 238
P
Sbjct: 228 P 228
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 109/212 (51%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PEVL G
Sbjct: 56 PAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-- 113
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
L P W+ G + A S + VI + +L E R+ I+
Sbjct: 114 LNAPEWYDAGKET--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 156
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P + YPG ++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 157 GSVNQDPIFKSYSLPPHECGYPG-SVFNPLNFAPT----LENKEKELANGRLAMLAFLGF 211
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP +NL H++DP HN ++ +
Sbjct: 212 LVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 243
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 111/215 (51%), Gaps = 24/215 (11%)
Query: 46 SYLTGELPGDYGFDVAGLSKDPMAFQKYF-------NFEILHARWAMLGALGALVPEVLD 98
SYLTG LP DYGFD GL DP F E++HARWAMLGA G + PE+L
Sbjct: 34 SYLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILA 92
Query: 99 MVGAFHLV--EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC-----QALLMV 151
G E +W++ G G Y P + VI++ Q
Sbjct: 93 TAGVIPQTPDEVIWFKSGVIPPAGVYDKYWLDP--YSLFFIEVILVQFAELRRWQDFRNP 150
Query: 152 GPECARY-CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210
G + +Y G+E + + GD +YPGG F+ NL K + +ELK KE+KNGRLAM
Sbjct: 151 GSQGKQYFLGLEEV----LKGSGDPSYPGGQFFNLFNLGKSDL--KELKTKELKNGRLAM 204
Query: 211 VAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
+A G+ QA T +GP +NL DH+SDP +N+L+
Sbjct: 205 LAVFGYGAQAVITAEGPFKNLTDHLSDPTGHNILT 239
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 109/212 (51%), Gaps = 32/212 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PEVL G
Sbjct: 39 PAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-- 96
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
L P W+ G + A S + VI + +L E R+ I+
Sbjct: 97 LNAPEWYDAGKET--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 139
Query: 163 -ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF P + YPG ++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 140 GSVNQDPIFKSYSLPPHECGYPG-SVFNPLNFAPT----LENKEKELANGRLAMLAFLGF 194
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
+Q TGKGP +NL H++DP HN ++ +
Sbjct: 195 LVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 226
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 15/139 (10%)
Query: 107 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EA 163
E VW++ G LDYLG P +L +Q ++ I CQ +LM E R G E
Sbjct: 12 EAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEG 69
Query: 164 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 223
L+PL YPG A FDPL L+ DP A ELKVKEIKNGRLAM + GF++QA T
Sbjct: 70 LDPL---------YPGDA-FDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVT 119
Query: 224 GKGPVQNLLDHISDPLHNN 242
GKGP++NL DH++DP+ NN
Sbjct: 120 GKGPIENLYDHLADPVANN 138
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 124/251 (49%), Gaps = 28/251 (11%)
Query: 4 TKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAG 62
T+ A + SS+ +A R+ + Y RP W G P P++L G LPGD+GFD
Sbjct: 8 TRVALGRTSSRVQA----RRSAVVVYAASRPLWQPGVTP---PAHLDGTLPGDFGFDPLN 60
Query: 63 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 122
L + A Y N E+ + RWAMLG G + P L VG ++ P W G + E
Sbjct: 61 LGVNKEALDWYRNAELQNGRWAMLGVAGIIFPAELTRVGLLNV--PDWADAGKVYAESEN 118
Query: 123 LDYLGIPGLHLAGSQ----GVIVIAICQALLMVGP--ECARYCGIE-ALEPLGIFLPGDI 175
IP L Q + I + + G E + G E A + G+
Sbjct: 119 ----AIPFASLLMVQFFLFNFVEIKRWEDIKKPGSQAEAGSFLGFESAFKGSGV-----S 169
Query: 176 NYPGGALFDPLNL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 234
YPGG F+PL L + + ++ K +EI+NGRLAM+A+LGF Q A TGKGP+ NL DH
Sbjct: 170 GYPGGP-FNPLGLGNSSKESMDDFKWREIRNGRLAMMAFLGFLAQHAATGKGPLDNLADH 228
Query: 235 ISDPLHNNLLS 245
++DP NN S
Sbjct: 229 LADPWANNFCS 239
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 32/208 (15%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PE+L G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGL-- 115
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE-- 162
L P W+ G + A S + V+ + +L E R+ I+
Sbjct: 116 LSAPEWYDAGKET--------------YFASSSTLFVV---EFILFHYVEIRRWQDIKNP 158
Query: 163 -ALEPLGIF----LPG-DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGF 216
++ IF LP D YPG ++F+PLN + E K KE+ NGRLAM+A+LGF
Sbjct: 159 GSVNQDPIFKSYSLPDHDCGYPG-SVFNPLNFAPT----LENKEKELANGRLAMLAFLGF 213
Query: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLL 244
+Q TGKGP +NL+ H++DP HN ++
Sbjct: 214 LVQHNVTGKGPFENLMQHLADPWHNTII 241
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K + R+ S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTGGKPVRSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFSKNRE 93
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 148
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
+ A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 RKTAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 107/221 (48%), Gaps = 33/221 (14%)
Query: 47 YLTGELPGDYGFDVAGLSKDPMAFQ----------KYFNF-EILHARWAMLGALGALVPE 95
YL G LPGDYGFD GL DP ++ + E++HARWAMLGA G + PE
Sbjct: 69 YLDGTLPGDYGFDPLGLL-DPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 96 VLDMVGAFHLVEPV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMV--- 151
+L G V W+R G G D+ P + V+AI A L
Sbjct: 128 ILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFF----IEVVAIQFAELKRLQD 183
Query: 152 ----GPECARY-CGIEALEPLGIFLPGDIN--YPGGALFDPLNLSKDPVAFEELKVKEIK 204
G + +Y G+E L G N YPGG F+ N K ++LK+ EIK
Sbjct: 184 YKNPGSQSRQYFLGLEGL------FKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIK 237
Query: 205 NGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
NGRLAM+A G+ QA TG GP NLL H++DP NL++
Sbjct: 238 NGRLAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGANLIT 278
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
K+ + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KSATKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 129
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP 149
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 81/122 (66%), Gaps = 14/122 (11%)
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEA--LEPLGIFLPGDINYPGG 180
LDYLG P +L +Q ++ I CQ +LM E R G + L+PL YPGG
Sbjct: 9 LDYLGNP--NLVHAQSILAIWACQVVLMGFVEGYRIAGDPSGGLDPL---------YPGG 57
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
A FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++
Sbjct: 58 A-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVN 116
Query: 241 NN 242
NN
Sbjct: 117 NN 118
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPGG+
Sbjct: 7 LDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS- 57
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 58 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 117
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 103/234 (44%), Gaps = 31/234 (13%)
Query: 17 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 76
A R ++ LWYG +R +LGP PSYL GE PGDYG+D AGLS DP AF +
Sbjct: 37 ATGRITMSKELWYGPDRVNYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 77 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 136
E++H RWAMLGALG + PEVL+ W RV + G P A S
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEK----------WVRVHFKDPCGSRPAPKSSP---TAAS 143
Query: 137 QGVIVIAICQALLMVGPECARYCGIEALEPLGI-----------FLPGDINYPGGALFDP 185
C P + C ++ P G L P A+ P
Sbjct: 144 TTSATPTWCT------PRASSPC-WDSKSPHGSRPRLPHQRPPRRLGEQRALPRRAVLRP 196
Query: 186 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL 239
+ L P ++V+ + L + + TGKGP++NLLDH +DP+
Sbjct: 197 VGLRGGPRNLCGVQVQGDQECPLRQCSPCWVFCPGIVTGKGPLENLLDHFADPV 250
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 22 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 81
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 44 ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
Query: 82 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 131
RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 104 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 152
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 84/132 (63%), Gaps = 10/132 (7%)
Query: 119 QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 178
+GE LDYLG P L +Q ++ CQ +LM E R G PLG + D YP
Sbjct: 6 EGE-LDYLGNP--SLVHAQSILASWACQVVLMGAVEGYRVAG----GPLGEVI--DPLYP 56
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
GG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP
Sbjct: 57 GGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 115
Query: 239 LHNNLLSMVKSM 250
++NN S +
Sbjct: 116 VNNNAWSYATNF 127
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 115/262 (43%), Gaps = 70/262 (26%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------------------------- 65
+RP W P YL G L GDYGFD GL K
Sbjct: 51 DRPLWFPGA--KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIG 108
Query: 66 ------DP-----------MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 108
DP Q++ E++H RWAML LGA+ E L V
Sbjct: 109 TRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV-------- 160
Query: 109 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPL 167
W G +L + YLG P L + I I +L++G E R +++ + L
Sbjct: 161 TWQDAGKVELVDGS-SYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDSEKRL 213
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
YPGG FDPL L+ DPV +L++ EIK+ RLAMV +LGF +QAA TGKGP
Sbjct: 214 ---------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGP 264
Query: 228 VQNLLDHISDPLHNNLLSMVKS 249
+ N H+SDPLH ++ S
Sbjct: 265 LNNWATHLSDPLHTTIIDTFSS 286
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
DP LKVKEIKNGRLAM A LGF+IQA TG+GPV+NL H+
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 109/226 (48%), Gaps = 32/226 (14%)
Query: 46 SYLTGELPGDYGFDVAGLS--------KDPMAFQKYFNFEILHARWAMLGALGALVPEVL 97
SYLTG LPGD+G+D L+ + M+ + E++H RWAMLGA GAL PEVL
Sbjct: 127 SYLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVL 186
Query: 98 DMVGAF-HLVEPVWWRVG--YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPE 154
G W++ G S + + G Q ++ + A+ E
Sbjct: 187 GKAGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFA--E 244
Query: 155 CAR--------------YCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELK 199
R + G+E L P YPGG F+ L +KD ELK
Sbjct: 245 TRRWQEYKEPGSVQKQFFLGLEKLTPPSQ----QPAYPGGGFFNFAGLGAKDEKQMFELK 300
Query: 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
VKEI+NGRLAM+A+LGF +QA T GP QNLLDHI+ P NLLS
Sbjct: 301 VKEIRNGRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLS 346
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 118/252 (46%), Gaps = 32/252 (12%)
Query: 1 MLETKKAALQDSSKFKALARQARNESLWYG---EERPRWLGPIPYDYPS-YLTGELPGDY 56
+L +K A + F AR AR ++ + +R W P + P+ +L G LPGD+
Sbjct: 10 LLGSKSAVAARPAAFSGKARTARVQARFVAVSAADRQVWF---PGNAPAPHLDGSLPGDF 66
Query: 57 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 116
GFD L DP + + E++H R AM G L P V G ++ P W+ G
Sbjct: 67 GFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNI--PQWYDAGSV 124
Query: 117 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE--ALEPLGIFL--- 171
+Q P A + Q +L E R+ + + G FL
Sbjct: 125 WVQNN-------PNFPFA------ALLFIQIILTGWVETKRWLDFKNPGSQADGSFLGVT 171
Query: 172 ---PGDIN-YPGGALFDPLNLSKDPVA-FEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
G N YPGG LFDP LS+ ++ + EIKNGRLAMVA+LGF Q A TGKG
Sbjct: 172 DDFKGVANGYPGGKLFDPFGLSRGSEGQLQKYQENEIKNGRLAMVAFLGFIAQHAATGKG 231
Query: 227 PVQNLLDHISDP 238
P+ NL DH+++P
Sbjct: 232 PIDNLADHLANP 243
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNELDFE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
DP LKVKEIKNGRLAM A LGF+IQA TG+GPV+NL H+
Sbjct: 105 DPDQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 37/209 (17%)
Query: 54 GDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
GD+GFD GLS DP + EI++ R+AMLGA+GA+ PE+L G
Sbjct: 1 GDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAET 59
Query: 108 PV-WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARY-------- 158
+ W++ G G T +Y + G + + AL+ E R+
Sbjct: 60 ALPWFQTGVIPPAG-TYNYW---------ADGYTLFVLEMALMGFA-EHRRFQDWAKPGS 108
Query: 159 ------CGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVA 212
G+E G+ GD YPGG F+PL KD + +ELK+KE+KNGRLAM+A
Sbjct: 109 MGKQYFLGLEK----GLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLA 164
Query: 213 WLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
LG++IQ TG GP QNLLDH++DP HN
Sbjct: 165 ILGYFIQGLVTGVGPFQNLLDHLADPWHN 193
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 101/184 (54%), Gaps = 21/184 (11%)
Query: 28 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 84
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP ++V
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVVA 185
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ + +L+ G E R LE D +PGG FDPL L+KDP LKVKE
Sbjct: 186 VVAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLAKDPDQAALLKVKE 236
Query: 203 IKNG 206
IKNG
Sbjct: 237 IKNG 240
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 114/262 (43%), Gaps = 70/262 (26%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G + P YL G L GDYGFD GL K
Sbjct: 50 DRPLWFPGAVA---PEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDII 106
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 107 GTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------- 159
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 167
W G +L+ + YLG P L S ++ + LL+ E R ++ + L
Sbjct: 160 -TWQDAGKVELENGS-SYLGQP---LPFSMTTLIW--IEVLLIGYIEFQRNAELDPEKRL 212
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
YPGG+ FDPL L+ DP E L++ EIK+ RLAMV +LGF +QAA TGKGP
Sbjct: 213 ---------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGP 263
Query: 228 VQNLLDHISDPLHNNLLSMVKS 249
+ N H+SDPLH + S
Sbjct: 264 LNNWATHLSDPLHTTIFDTFSS 285
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 205
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 53 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 105
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 106 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 205
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 206 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 53 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 105
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 106 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 115/247 (46%), Gaps = 49/247 (19%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVA 61
T+ + + S++ ++ Q EER W P P +LTGE PGD GFD
Sbjct: 127 STRGVSTRGSTRGQSTRGQRSTRGSAPEEERLVWFPNATP---PDHLTGEFPGDRGFDPL 183
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA-FHLVEPVWWRVGYSKLQG 120
GLSKDP+ F++ E+ H R AMLG +G +VPE+ G F L R+G LQ
Sbjct: 184 GLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGPWFDLSSFNLTRLGLVALQV 243
Query: 121 -ETLDYL-GIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYP 178
L+Y G G G G D +YP
Sbjct: 244 IAPLEYWRGNRGFSWNGDDGP----------------------------------DQSYP 269
Query: 179 GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDP 238
G FDPL L+ EE K+KEIKNGRLAM A LG +Q+ TGK P+ NL +H+S+P
Sbjct: 270 G---FDPLRLTD-----EETKLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSEHLSNP 321
Query: 239 LHNNLLS 245
N+L+
Sbjct: 322 ASVNILT 328
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 103/218 (47%), Gaps = 51/218 (23%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
EER W I P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +G
Sbjct: 716 EERELWFPNIVP--PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVG 773
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LVPE+L F +W +V +++ AL +
Sbjct: 774 CLVPELLGNGAWFQ----IWDKVDFNRFA-------------------------VVALQV 804
Query: 151 VGPECARYCGIEALEPLGIFLPGD-----INYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
V P +E G FL D +YPG FDPLNL+ E K EIKN
Sbjct: 805 VAP-------LEYWRGNGGFLWNDEETIDQSYPG---FDPLNLTT-----EYTKEAEIKN 849
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
GRLAM+ G +Q+ TGK P+ NL+DH+S PL N+
Sbjct: 850 GRLAMIGMFGLEVQSHVTGKSPITNLIDHLSHPLTANI 887
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 107/219 (48%), Gaps = 49/219 (22%)
Query: 31 EERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 89
+ERP W P PS+LTGE GD GFD AGL+ DP F++ E+ H R AML +
Sbjct: 347 DERPLWF---PNTLAPSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIV 403
Query: 90 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 149
GALVP+ +L + +W+ E GI G+ +AI A
Sbjct: 404 GALVPD--------YLGKGIWY---------EAAQNAGI---------GLKEVAIFTAAY 437
Query: 150 MVGPECARYCGI-EALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 208
V E AR G+ E +P I YPG FDPLNL+ D K EIKNGRL
Sbjct: 438 GVF-EVAR--GVKENSDPTTI-------YPG---FDPLNLTTD-----YTKEAEIKNGRL 479
Query: 209 AMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
A+ A LGF +Q G P+ NL DH+ PL +N+ +
Sbjct: 480 ALTALLGFEVQRHVVGGSPLANLADHLQQPLQHNIADSI 518
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 107/243 (44%), Gaps = 51/243 (20%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 527 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 576
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
+ H R AML +G +VPE+L + W+ G S + GL L
Sbjct: 577 VFHGRLAMLCMVGCIVPELLG--------KGAWFEAGDS-----------VDGLKL---- 613
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
G I +AI E R G + + D +YPG FDPLNL+ D
Sbjct: 614 GFITMAIAAPT-----EYWRGQGGFNWQKGDL----DRSYPG---FDPLNLTTD-----Y 656
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCP 257
+ E+KNGRLA+ A G Q TG+ P+ NL H+++P+ N+ + + +M SG
Sbjct: 657 TRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANIATNL-AMFASSGAK 715
Query: 258 LER 260
ER
Sbjct: 716 EER 718
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 100/228 (43%), Gaps = 50/228 (21%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 901 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 950
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
+ H R AML +G +VPE+L + W+ G S + GL L
Sbjct: 951 VFHGRLAMLCMVGCIVPELLG--------KGAWFEAGDS-----------VDGLKL---- 987
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
G I +AI E R G + + D +YPG FDPLNL+ D
Sbjct: 988 GFITMAIAAPT-----EYWRGQGGFNWQKGDL----DRSYPG---FDPLNLTTD-----Y 1030
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
+ E+KNGRLA+ A G Q TG+ P+ NL H+++PL N+ +
Sbjct: 1031 TRAAEVKNGRLALTAVAGLTAQYLATGESPLANLTAHLANPLGANITT 1078
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 109/224 (48%), Gaps = 29/224 (12%)
Query: 19 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 78
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF------------- 117
Query: 139 VIVIAICQALLMVGPECARYCGIE--ALEPLGIFLPG-------DINYPGGALFDPLNLS 189
+ + Q LM E R+ + + G FL + YPGG FDP+ LS
Sbjct: 118 -PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 190 K-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232
+ D ++E K KE+KNGRLAM+A LGF Q A TGKGP+ NL+
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLV 220
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 124/291 (42%), Gaps = 86/291 (29%)
Query: 4 TKKAALQDSSKFKALARQARNESLWY-GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 62
TKK+A + S A+ + LWY G + P WL G L GDYGFD G
Sbjct: 36 TKKSAPKRS------AKPTSDRPLWYPGAKAPEWL-----------DGSLVGDYGFDPFG 78
Query: 63 LSK-------------------------------------------DPMAFQKYFNFEIL 79
L K + Q++ E++
Sbjct: 79 LGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELI 138
Query: 80 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139
H RWAML LGAL E L V W G +L E YLG P L +
Sbjct: 139 HGRWAMLATLGALTVEWLTGV--------TWQDAGKVELV-EGSSYLGQP-LPFS----- 183
Query: 140 IVIAICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
I I +L++G E R ++ + L YPGG FDPL L++DP L
Sbjct: 184 ITTLIWIEVLVIGYIEFQRNSELDPEKRL---------YPGGKFFDPLGLAEDPEKKATL 234
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
++ EIK+ RLAMVA+LGF +QAA TGKGP+ N H+SDPLH ++ S
Sbjct: 235 QLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 116/244 (47%), Gaps = 43/244 (17%)
Query: 3 ETKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVA 61
T+ + + S++ ++ Q EER W P P +LTGE PGD GFD
Sbjct: 127 STRGVSTRGSTRGQSTRGQRSTRGNAPEEERLVWFPNATP---PDHLTGEFPGDRGFDPL 183
Query: 62 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
GLS DP+ F++ E+ H R AMLG +G +VPE+ G + L G
Sbjct: 184 GLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGPWF------------DLSGF 231
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
L LG+ L VIA + + G G P D +YPG
Sbjct: 232 NLTRLGLVALQ--------VIAPLE----------YWRGNRGFSWNGDDGP-DQSYPG-- 270
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ D E K+KEIKNGRLAM A LG +Q+ TGK P+ NL +H+S+P
Sbjct: 271 -FDPLRLTDD-----ETKLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSEHLSNPASV 324
Query: 242 NLLS 245
N+L+
Sbjct: 325 NILT 328
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 103/218 (47%), Gaps = 51/218 (23%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 90
EER W I P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +G
Sbjct: 716 EERELWFPNIVP--PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVG 773
Query: 91 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 150
LVPE+L F +W +V +++ AL +
Sbjct: 774 CLVPELLGNGAWFQ----IWDKVDFNRFA-------------------------VVALQV 804
Query: 151 VGPECARYCGIEALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 205
V P +E G FL D +YPG FDPLNL+ E K EIKN
Sbjct: 805 VAP-------LEYWRGNGGFLWNDEETVDQSYPG---FDPLNLTT-----EYTKEAEIKN 849
Query: 206 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
GRLAM+ G +Q+ TGK P+ NL+DH+S PL N+
Sbjct: 850 GRLAMIGMFGLEVQSHVTGKSPITNLIDHLSHPLTANI 887
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 111/235 (47%), Gaps = 54/235 (22%)
Query: 15 FKALARQARNESLWYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKY 73
F A R+++ +ERP W P PS+L GE GD GFD AGL+ DP F++
Sbjct: 336 FAASGRKSQKS-----DERPLWF---PNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERM 387
Query: 74 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133
E+ H R AML +GALVP+ +L + +W+ E GI
Sbjct: 388 RIAEVYHGRLAMLAVVGALVPD--------YLGKGIWY---------EAAQNAGI----- 425
Query: 134 AGSQGVIVIAICQALLMVGPECARYCGI-EALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
G+ +AI A V E AR G+ E +P I YPG FDPLNL+ D
Sbjct: 426 ----GLKEVAIFTAAYGVF-EVAR--GVKENSDPTTI-------YPG---FDPLNLTTD- 467
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247
K EIKNGRLA+ A LGF +Q G P+ NL +H+ PL N+ +
Sbjct: 468 ----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSI 518
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 107/243 (44%), Gaps = 51/243 (20%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 527 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 576
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
+ H R AML +G +VPE+L + W+ G S + GL L
Sbjct: 577 VFHGRLAMLCMVGCIVPELLG--------KGAWFEAGDS-----------VDGLKL---- 613
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEE 197
G I +AI E R G + + D +YPG FDPLNL+ D
Sbjct: 614 GFITMAIAAPT-----EYWRGQGGFNWQKGEL----DRSYPG---FDPLNLTTD-----Y 656
Query: 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMDDPSGCP 257
+ E+KNGRLA+ A G Q TG+ P+ NL H+++P+ N+ + + +M SG
Sbjct: 657 TRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITTNL-AMFASSGAK 715
Query: 258 LER 260
ER
Sbjct: 716 EER 718
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 71/174 (40%), Gaps = 45/174 (25%)
Query: 18 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 77
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 901 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 950
Query: 78 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 137
+ H R AML +G +VPE+L + W+ G S + GL L
Sbjct: 951 VFHGRLAMLCMVGCIVPELLG--------KGAWFEAGDS-----------VDGLKL---- 987
Query: 138 GVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 191
G I +AI E R G + + D +YPG FDPLNL+ D
Sbjct: 988 GFITMAIAAPT-----EYWRGQGGFNWQKGEL----DRSYPG---FDPLNLTTD 1029
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 177 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 215
YP FDPLNL+ DP + ++V E+ +GRLAM+ +G
Sbjct: 925 YPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG 963
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 114/262 (43%), Gaps = 70/262 (26%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G + P YL G L GDYGFD GL K
Sbjct: 50 DRPLWFPGAVA---PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDII 106
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 107 GTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------- 159
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL 167
W G +L + YLG P L S ++ + LL+ E R +++ + L
Sbjct: 160 -TWQDAGKVELV-DGSSYLGQP---LPFSMTTLIW--IEVLLIGYIEFQRNAELDSEKRL 212
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
YPGG+ FDPL L+ DP E L++ EIK+ RLAMV +LGF +QAA TGKGP
Sbjct: 213 ---------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGP 263
Query: 228 VQNLLDHISDPLHNNLLSMVKS 249
+ N H+SDPLH + S
Sbjct: 264 LNNWATHLSDPLHTTIFDTFSS 285
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 57 GFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV- 109
GFD GLS DP + E+ + R+AMLGA+GA+ PE+ +G +
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 110 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI---CQALLMVGPECARY-CGIEALE 165
W++ G G + Y P ++ A Q G +Y G+E
Sbjct: 60 WFQTGVIPPAG-SYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEK-- 116
Query: 166 PLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 225
G GD YPGG F+PL KD + +ELK+KEIKNGRLAM+A LG++IQ TG
Sbjct: 117 --GFAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 226 GPVQNLLDHISDPLHNNLLSMVK 248
GP QNLLDH++DP++NN+L+ +K
Sbjct: 175 GPFQNLLDHLADPVNNNVLTSLK 197
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 115/263 (43%), Gaps = 72/263 (27%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------------------------- 65
+RP W P +L G L GDYGFD GL K
Sbjct: 53 DRPLWFPGA--KSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 110
Query: 66 -----------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 108
+ Q++ E++H RWAML LGAL E L V
Sbjct: 111 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV-------- 162
Query: 109 VWWRVGYSKL-QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L +G T YLG P L + I I +L++G E R +++ +
Sbjct: 163 TWQDAGKVELVEGST--YLGQP-LPFS-----ITTLIWIEVLVIGYIEFQRNAELDSEKR 214
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG FDPL L+ DP L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 215 L---------YPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 265
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH ++ S
Sbjct: 266 PLNNWATHLSDPLHTTIIDTFSS 288
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
DP LKVKEIKNGRLAM LGF+IQA TG+GPV+NL H+
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFGMLGFFIQAYVTGEGPVENLAKHL 149
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 115/263 (43%), Gaps = 72/263 (27%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------------------------- 65
+RP W P +L G L GDYGFD GL K
Sbjct: 111 DRPLWFPGA--KSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 168
Query: 66 -----------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 108
+ Q++ E++H RWAML LGAL E L V
Sbjct: 169 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV-------- 220
Query: 109 VWWRVGYSKL-QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L +G T YLG P L S I I +L++G E R +++ +
Sbjct: 221 TWQDAGKVELVEGST--YLGQP---LPFS---ITTLIWIEVLVIGYIEFQRNAELDSEKR 272
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG FDPL L+ DP L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 273 L---------YPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 323
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH ++ S
Sbjct: 324 PLNNWATHLSDPLHTTIIDTFSS 346
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 108/248 (43%), Gaps = 66/248 (26%)
Query: 45 PSYLTGELPGDYGFDVAGLSK--------------------------------------- 65
P YL G L GDYGFD GL K
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 66 ----DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
+ Q++ E++H RWAML LGAL E L V W G +L E
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV--------TWQDAGKVELV-E 174
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 181
YLG P L + + + +AL++ E R ++ + L YPGG+
Sbjct: 175 GSSYLGQP-LPFS----ITTLIWIEALVIGYIEFQRNAELDPEKRL---------YPGGS 220
Query: 182 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 241
FDPL L+ DP L++ EIK+ RLAMV +LGF +QAA TGKGP+ N H+SDPLH
Sbjct: 221 YFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHT 280
Query: 242 NLLSMVKS 249
++ S
Sbjct: 281 TIIDTFSS 288
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 53 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 112
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFK 59
Query: 113 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-IFL 171
G LDYLG P L +Q ++ I CQ +LM E R G PLG + +
Sbjct: 60 AGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVTV 113
Query: 172 PGDINYPGGALFDPLNLSKDPVAFEELK 199
P YPGG+ FDPL L+ DP AF ELK
Sbjct: 114 P---IYPGGS-FDPLGLADDPEAFAELK 137
>gi|1165248|gb|AAA85589.1| chlorophyll a/b binding protein of PS II, partial [Picea abies]
Length = 131
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 78/120 (65%), Gaps = 9/120 (7%)
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLG P +L +Q ++ I CQ +LM E R G PLG D YPGG
Sbjct: 9 LDYLGSP--NLVHAQSILAIWACQVILMGAIEGYRVAG----GPLGEVT--DPIYPGGN- 59
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP+ NL DH++DP++NN
Sbjct: 60 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLXNLADHLADPVNNN 119
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 73 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPG 130
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G IP
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP- 59
Query: 131 LHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190
+++ + + +L+ G E R E D +PGG FDPL L+K
Sbjct: 60 ------INLVLAVVAEVVLLGGAEYYRITNGLDFE--------DKLHPGGP-FDPLGLAK 104
Query: 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHI 235
DP LKVKEIKNGRLAM LGF+IQA TG+GPV+NL H+
Sbjct: 105 DPEQGALLKVKEIKNGRLAMFXMLGFFIQAYVTGEGPVENLAKHL 149
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 115/263 (43%), Gaps = 72/263 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G + P YL G L GDYGFD GL K
Sbjct: 53 DRPLWFPGAVA---PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEII 109
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 110 GTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------- 162
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P L + I I +L++G E R ++ +
Sbjct: 163 -TWQDAGKVELVDGS-SYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDPEKR 214
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG+ FDPL L+ DP E L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 215 L---------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKG 265
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH + S
Sbjct: 266 PLNNWATHLSDPLHTTIFDTFSS 288
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 121/291 (41%), Gaps = 82/291 (28%)
Query: 2 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 61
TKKAA + SK A + LWY + P YL G L GDYGFD
Sbjct: 35 FRTKKAAPKKFSKPSA------DRPLWYPGAKA----------PEYLDGSLVGDYGFDPF 78
Query: 62 GLSK-------------------------------------------DPMAFQKYFNFEI 78
GL K + Q++ E+
Sbjct: 79 GLGKPVEYLQYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRECEL 138
Query: 79 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 138
+H RWAML LGAL E L V W G +L E YLG P L +
Sbjct: 139 IHGRWAMLATLGALSVEWLTGV--------TWQDAGKVELV-EGSSYLGQP-LPFS---- 184
Query: 139 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEEL 198
+ + + LL+ E R ++ + L YPGG FDPL L+ DP L
Sbjct: 185 ISTLIWIEVLLIGYIEFQRNAELDPEKRL---------YPGGKFFDPLGLAADPEKKATL 235
Query: 199 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249
++ EIK+ RLAMV +LGF +QAA TGKGP+ N H+SDPLH ++ + S
Sbjct: 236 QLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTLTS 286
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 51 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 103
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 104 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 57 GFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV- 109
GFD GLS DP + E+ + R+AMLGA+GA+ PE+ +G +
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 110 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI---CQALLMVGPECARY-CGIEALE 165
W++ G G + Y P ++ A Q G +Y G+E
Sbjct: 60 WFQTGVIPPAG-SYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEK-- 116
Query: 166 PLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 225
G GD YPGG F+PL KD + +ELK+KEIKNGRLAM+A LG++IQ TG
Sbjct: 117 --GFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 226 GPVQNLLDHISDPLHNNLLSMVK 248
GP QNLLDH++DP++NN+L+ +K
Sbjct: 175 GPFQNLLDHLADPVNNNVLTSLK 197
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 114/262 (43%), Gaps = 70/262 (26%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------------------------- 65
+RP W P YL G L GDYGFD GL K
Sbjct: 51 DRPLWFPGA--KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 108
Query: 66 ------DP-----------MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 108
DP Q++ E++H RWAML LGA+ E L V
Sbjct: 109 TRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV-------- 160
Query: 109 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPL 167
W G +L + YLG P L + I I +L+VG E R +++ + L
Sbjct: 161 TWQDAGKVELV-DGSSYLGQP-LPFS-----ISTLIWIEVLVVGYIEFQRNAELDSEKRL 213
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
YPGG FDPL L+ DP +L++ EIK+ RLAMV +LGF +QAA TGKGP
Sbjct: 214 ---------YPGGKFFDPLGLASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGP 264
Query: 228 VQNLLDHISDPLHNNLLSMVKS 249
+ N H+SDPLH ++ S
Sbjct: 265 LNNWATHLSDPLHTTIIDTFSS 286
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 85/141 (60%), Gaps = 10/141 (7%)
Query: 111 WRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI 169
W S++ E LDYLG P L A Q ++ + CQ +LM E R G PLG
Sbjct: 1 WIPAVSQIFSEGELDYLGNPSLIHA--QSILAVWACQVVLMGAVEGYRVAG----GPLGE 54
Query: 170 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229
+ D PGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP +
Sbjct: 55 VI--DPLCPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFE 111
Query: 230 NLLDHISDPLHNNLLSMVKSM 250
NL DH++DP++NN S +
Sbjct: 112 NLADHLADPVNNNAWSYATNF 132
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 203
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 204 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 112/262 (42%), Gaps = 70/262 (26%)
Query: 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------DP----------------- 67
+RP W P YL G L GDYGFD GL K DP
Sbjct: 53 DRPLWFPGA--QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIG 110
Query: 68 -------------------MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 108
Q++ E++H RWAML LGAL E L V
Sbjct: 111 TRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV-------- 162
Query: 109 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPL 167
W G +L + YLG P I I +L++G E R ++ + L
Sbjct: 163 TWQDAGKVELV-DGSSYLGQP------LPFTITTLIWIEVLVIGYIEFQRNAELDPEKRL 215
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227
YPGG+ FDPL L+ DP E L++ EIK+ RLAMV +LGF +QAA TGKGP
Sbjct: 216 ---------YPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGP 266
Query: 228 VQNLLDHISDPLHNNLLSMVKS 249
+ N H+SDPLH + + S
Sbjct: 267 LNNWATHLSDPLHTTIFDTLGS 288
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 16 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 75
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 76 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 114
E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAG 134
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 9 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 68
L D A S WYG R +LGP+ P +L GELPGDYGFDV GL+ P
Sbjct: 85 LSDLGGVAMFAATGEKLSDWYGPNRKLFLGPLSDGAPEHLKGELPGDYGFDVLGLATQPT 144
Query: 69 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 128
++Y EI++ RWAMLG +G +VPE+L EPVW++ G + E L+YLG
Sbjct: 145 RLERYRQGEIINGRWAMLGIVGCIVPELLARNYGVPFPEPVWFKTGATVFSEEGLNYLGN 204
Query: 129 PGLHLAGSQGVIVIAICQALLMVGPECARYCG 160
P L A S + I + + L + E R G
Sbjct: 205 PSLIHAKS--IAAILVTEILFVGAAEAFRVSG 234
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233
D+ YPG A FDPL LSKD AF ELKVKE+KNGRLAM+ LG ++Q TGKGP+QNL D
Sbjct: 9 DLVYPGKA-FDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKGPLQNLAD 67
Query: 234 HISDPLHNNLLSM 246
H++DP N+++
Sbjct: 68 HLADPTGANIITF 80
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 58 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPVWWR 112
FD GLSKD AF + E+ + R AMLG LG + G A HL +P
Sbjct: 17 FDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKGPLQNLADHLADPTGAN 76
Query: 113 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM--VGPECARYCG---IEALEPL 167
+ L LG GV + A L GP + G A E L
Sbjct: 77 I--ITFHQRVLSDLG----------GVAMFAATGEKLSDWYGPNRKLFLGPLSDGAPEHL 124
Query: 168 GIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 215
LPGD FD L L+ P E + EI NGR AM+ +G
Sbjct: 125 KGELPGDYG------FDVLGLATQPTRLERYRQGEIINGRWAMLGIVG 166
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 51 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 103
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 104 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 203
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN
Sbjct: 204 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 79/132 (59%), Gaps = 15/132 (11%)
Query: 107 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGI---EA 163
E VW++ G LDYLG P +L +Q ++ I CQ +LM E R G E
Sbjct: 5 EAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEG 62
Query: 164 LEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 223
L+PL YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA T
Sbjct: 63 LDPL---------YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 112
Query: 224 GKGPVQNLLDHI 235
GKGP++NL DH
Sbjct: 113 GKGPIENLYDHF 124
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 106/212 (50%), Gaps = 32/212 (15%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 66 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGF 125
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC--- 159
W G + +Y P L G Q LL E RY
Sbjct: 126 ------SWPGAGVAWYDAGKFEYFA-PASSLFG---------VQMLLFAWVEIRRYQDFV 169
Query: 160 --GIEALEPLGIF----LPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 211
G +P IF LP D N PG G +FDP SK + + LK+KEIKNGRLAM+
Sbjct: 170 KPGSANQDP--IFTNNKLP-DGNEPGYPGGIFDPFGWSKGDI--KSLKLKEIKNGRLAML 224
Query: 212 AWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
A+ GF QA TG P++NL H++DP +
Sbjct: 225 AFAGFIGQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 94/166 (56%), Gaps = 18/166 (10%)
Query: 85 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 142
MLGA G ++PE + GA E VW++ G L G TL+Y G IP +IV
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP-------INLIVA 53
Query: 143 AICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKE 202
+ +L+ G E R LE D +PGG FDPL L+ DP LKVKE
Sbjct: 54 VAAEVVLVGGAEYYRIINGLDLE--------DKLHPGGP-FDPLGLASDPDQAALLKVKE 104
Query: 203 IKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
IKNGRLAM + LGF+IQA TG+GPV+NL H+SDP NNLL+++
Sbjct: 105 IKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 150
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 2 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 54
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN
Sbjct: 55 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 104
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 106/212 (50%), Gaps = 32/212 (15%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 66 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGF 125
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYC--- 159
W G + +Y P L G Q LL E RY
Sbjct: 126 ------SWPGAGVAWYDAGKFEYFA-PASSLFG---------VQMLLFAWVEIRRYQDFV 169
Query: 160 --GIEALEPLGIF----LPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 211
G +P IF LP D N PG G +FDP SK + + LK+KEIKNGRLAM+
Sbjct: 170 KPGSANQDP--IFTNNKLP-DGNEPGYPGGIFDPFGWSKGDI--KSLKLKEIKNGRLAML 224
Query: 212 AWLGFYIQAAFTGKGPVQNLLDHISDPLHNNL 243
A+ GF QA TG P++NL H++DP +
Sbjct: 225 AFAGFIGQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 78/120 (65%), Gaps = 9/120 (7%)
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLG P L A Q ++ I CQ +LM E R G PLG D YPGG+
Sbjct: 3 LDYLGNPSLIHA--QSILAIWACQVILMGAVEGYRIAG----GPLGEVT--DPLYPGGS- 53
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL D ++DP++NN
Sbjct: 54 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADGLADPVNNN 113
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 103
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
+ P+W + G + GI V ALL + +
Sbjct: 104 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF-----EFVAMA 139
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
A E PGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 140 AAEGQRRRC-RRRRLPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 197
Query: 223 TGKGPVQNLLDHISDP 238
TGK P+ L +H+++P
Sbjct: 198 TGKAPLAALGEHLANP 213
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 97/186 (52%), Gaps = 26/186 (13%)
Query: 43 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNW 103
Query: 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
+ P+W + G + GI V ALL + +
Sbjct: 104 YD--APLW------AVNGGKATWFGIE-----------VPFDLNALLAF-----EFVAMA 139
Query: 163 ALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAF 222
A E G + YPGGA FDPL +KD ELK+KEIKNGRLAMVA+LGF Q A
Sbjct: 140 AAEGQ-RGDAGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAA 197
Query: 223 TGKGPV 228
TGKGP+
Sbjct: 198 TGKGPI 203
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 117/263 (44%), Gaps = 72/263 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G I P +L G L GDYGFD GL K
Sbjct: 54 DRPLWYPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 110
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 111 GTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------- 163
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P L + I I +L++G E R +++ +
Sbjct: 164 -TWQDAGKVELV-DGSSYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDSEKR 215
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG FDPL+L+ DP +L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 216 L---------YPGGKFFDPLSLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH ++ S
Sbjct: 267 PLNNWATHLSDPLHTTIIDTFSS 289
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 112/258 (43%), Gaps = 72/258 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G + P YL G L GDYGFD GL K
Sbjct: 54 DRPLWFPGAVA---PDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGII 110
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 111 GTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV------- 163
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P I I +L++G E R ++ +
Sbjct: 164 -TWQDAGKVELV-DGSSYLGQP------LPFTISTLIWIEVLVIGYIEFQRNAELDPEKR 215
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG+ FDPL L+ DP E L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 216 L---------YPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Query: 227 PVQNLLDHISDPLHNNLL 244
P+ N H+SDPLH +
Sbjct: 267 PLNNWATHLSDPLHTTIF 284
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 37/214 (17%)
Query: 45 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104
P+YL G L GD GFD L++DP + + ++++ RWAMLG G L+PEVL G +
Sbjct: 43 PAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMN 102
Query: 105 LVEPVWWRVGYSKLQGETLDYLGIPG--LHLAGSQGVIVIAICQALLMVGPECARYCGIE 162
E +L +PG + A S + + + + E R+ I+
Sbjct: 103 APE-----------------WLRLPGKETYFASSSTALRVHMSSTYV----EIRRWQDIK 141
Query: 163 ---ALEPLGIFL-----PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWL 214
++ IF P + YPG +F+PLN + P+ E K KE+ NGRLAM+A+L
Sbjct: 142 NPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFA--PL---ENKEKELANGRLAMLAFL 195
Query: 215 GFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248
GF +Q GKGP +NL H++DP HN ++ +
Sbjct: 196 GFLVQHNVHGKGPFENLQQHLADPWHNTIIQTIS 229
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 108/260 (41%), Gaps = 71/260 (27%)
Query: 30 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP---------------------- 67
G RP W P YL G L GDYGFD GL K P
Sbjct: 61 GANRPLWFPGA--KCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGEL 118
Query: 68 ----------------------MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 105
Q++ E++H RWAML LGA+ E V
Sbjct: 119 LGERVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTGV----- 173
Query: 106 VEPVWWRVGYSKL-QGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL 164
W G +L QG + +P + + + L++ E R ++
Sbjct: 174 ---TWQDAGKVELDQGPSYFGFSLPFT-------ITALVWIEVLVIGFIEFQRNTELDPE 223
Query: 165 EPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 224
+ L YPGG+ FDPL L+ DP E LK+ EIK+ RLAMVA GF +QAA TG
Sbjct: 224 KRL---------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATG 274
Query: 225 KGPVQNLLDHISDPLHNNLL 244
KGP+ N + H+SDPLH ++
Sbjct: 275 KGPLDNWVTHLSDPLHTTII 294
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 17/203 (8%)
Query: 57 GFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV- 109
GFD GLS DP + E+++ R+AMLGA GA+ PE+ +G +
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 110 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI---CQALLMVGPECARY-CGIEALE 165
W++ G G + Y P ++ A Q G +Y G+E
Sbjct: 60 WFQTGVIPPAG-SYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEK-- 116
Query: 166 PLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 225
G GD YPGG F+PL KD + +ELK+KEIKNGRLAM+A LG++IQ TG
Sbjct: 117 --GFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 226 GPVQNLLDHISDPLHNNLLSMVK 248
GP QNLLDH++DP+ NN+L+ +K
Sbjct: 175 GPFQNLLDHLADPVSNNVLTSLK 197
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 116/263 (44%), Gaps = 72/263 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G I P +L G L GDYGFD GL K
Sbjct: 54 DRPVWYPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 110
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 111 GTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------- 163
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P L + I I +L++G E R +++ +
Sbjct: 164 -TWQDAGKVELV-DGSSYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDSEKR 215
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG FDPL L+ DP +L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 216 L---------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH ++ S
Sbjct: 267 PLNNWATHLSDPLHTTIIDTFSS 289
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 114/258 (44%), Gaps = 72/258 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G + P YL G L GDYGFD GL K
Sbjct: 54 DRPLWFPGAVA---PDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGII 110
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 111 GTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------- 163
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P L + I I +L++G E R ++ +
Sbjct: 164 -TWQDAGKVELV-DGSSYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDPEKR 215
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG+ FDPL L+ DP E L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 216 L---------YPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Query: 227 PVQNLLDHISDPLHNNLL 244
P+ N H+SDPLH +
Sbjct: 267 PLNNWATHLSDPLHTTIF 284
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 108/249 (43%), Gaps = 68/249 (27%)
Query: 45 PSYLTGELPGDYGFDVAGLSK--------------------------------------- 65
P YL G L GDYGFD GL K
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 66 ----DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 121
+ Q++ E++H RWAML LGAL E L V W G +L E
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV--------TWQDAGKVELV-E 174
Query: 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGG 180
YLG P L + I I +L++G E R ++ + L YPGG
Sbjct: 175 GSSYLGQP-LPFS-----ITTLIWIEVLVIGYIEFQRNAELDPEKRL---------YPGG 219
Query: 181 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240
+ FDPL L+ DP L++ EIK+ RLAMV +LGF +QAA TGKGP+ N H+SDPLH
Sbjct: 220 SYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 279
Query: 241 NNLLSMVKS 249
++ S
Sbjct: 280 TTIIDTFSS 288
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 114/270 (42%), Gaps = 79/270 (29%)
Query: 20 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK-------------- 65
RQ + LWY + P YL G L GDYGFD GL K
Sbjct: 43 RQIPDRPLWYPGAKA----------PEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQ 92
Query: 66 -----------------------------DPMAFQKYFNFEILHARWAMLGALGALVPEV 96
+ Q++ E++H RWAML LGAL E
Sbjct: 93 NLAKNLAGDVIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEW 152
Query: 97 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG--PE 154
L + W G +L E YLG P L + I I +L++G E
Sbjct: 153 LTGI--------TWQDAGKVELV-EGSSYLGQP-LPFS-----ITTLIWIEVLVIGYIVE 197
Query: 155 CARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWL 214
R ++ + L YPGG+ FDPL L+ DP L++ EIK+ RLAMVA+L
Sbjct: 198 FQRNAELDPEKRL---------YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFL 248
Query: 215 GFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244
GF +QAA TGKGP+ N H+SDPLH +
Sbjct: 249 GFAVQAAATGKGPLNNWATHLSDPLHTTIF 278
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 114/263 (43%), Gaps = 70/263 (26%)
Query: 31 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W P +L G L GDYGFD GL K
Sbjct: 50 SDRPLWFPGA--KSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 107
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 108 GTRTEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------- 160
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P L + I I +L++G E R +++ +
Sbjct: 161 -TWQDAGKVELV-DGSSYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDSEKR 212
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG FDPL L+ DP +L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 213 L---------YPGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 263
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH ++ S
Sbjct: 264 PLNNWATHLSDPLHTTIIDTFSS 286
>gi|914284|gb|AAB34068.1| light-harvesting complex b type 3, Lhcb3 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 132 aa]
Length = 132
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 8/120 (6%)
Query: 123 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182
LDYLG P +L +Q ++ + Q +LM E R G+ G+ GD+ YPGG
Sbjct: 9 LDYLGNP--NLVHAQSILAVLGFQVILMGLVEGFRINGLP-----GVGEGGDL-YPGGQY 60
Query: 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 242
FDPL L+ DP F ELKVKE+KNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN
Sbjct: 61 FDPLGLADDPDTFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 120
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 116/263 (44%), Gaps = 72/263 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G I P +L G L GDYGFD GL K
Sbjct: 54 DRPLWYPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 110
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 111 GTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------- 163
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P L + I I +L++G E R +++ +
Sbjct: 164 -TWQDAGKVELV-DGSSYLGQP-LPFS-----ISTLIWIEVLVIGYIEFQRNAELDSEKR 215
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG FDPL L+ DP +L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 216 L---------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH ++ S
Sbjct: 267 PLNNWATHLSDPLHTTIIDTFSS 289
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 7/113 (6%)
Query: 133 LAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDP 192
L +Q ++ I CQ +LM E R G PLG + D YPGG+ FDPL L++DP
Sbjct: 2 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLAEDP 54
Query: 193 VAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 245
AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN S
Sbjct: 55 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 107
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 116/263 (44%), Gaps = 72/263 (27%)
Query: 32 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSK------------------------- 65
+RP W G I P +L G L GDYGFD GL K
Sbjct: 55 DRPLWYPGAIS---PEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 111
Query: 66 ------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 107
+ Q++ E++H RWAML LGAL E L V
Sbjct: 112 GTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------- 164
Query: 108 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEP 166
W G +L + YLG P L + I I +L+VG E R +++ +
Sbjct: 165 -TWQDAGKVELV-DGSSYLGQP-LPFS-----ISTLIWIEVLVVGYIEFQRNAELDSEKR 216
Query: 167 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226
L YPGG FDPL L+ DP +L++ EIK+ RLAMVA+LGF +QAA TGKG
Sbjct: 217 L---------YPGGKYFDPLGLAADPEKRAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 267
Query: 227 PVQNLLDHISDPLHNNLLSMVKS 249
P+ N H+SDPLH ++ S
Sbjct: 268 PLNNWATHLSDPLHTTIIDTFSS 290
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,134,123,767
Number of Sequences: 23463169
Number of extensions: 228694356
Number of successful extensions: 458750
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 452029
Number of HSP's gapped (non-prelim): 3113
length of query: 305
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 163
effective length of database: 9,027,425,369
effective search space: 1471470335147
effective search space used: 1471470335147
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.9 bits)