Query 021923
Match_columns 305
No_of_seqs 189 out of 1159
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00171 photosystem light-ha 100.0 3.5E-74 7.6E-79 545.1 20.6 248 1-248 76-323 (324)
2 PLN00025 photosystem II light 100.0 2.4E-63 5.1E-68 461.9 18.4 215 24-248 42-256 (262)
3 PLN00187 photosystem II light- 100.0 7.9E-61 1.7E-65 449.1 16.4 201 23-248 42-285 (286)
4 PLN00098 light-harvesting comp 100.0 3.6E-60 7.9E-65 441.6 16.9 204 25-249 54-266 (267)
5 PLN00101 Photosystem I light-h 100.0 2.1E-59 4.5E-64 433.0 14.8 197 25-247 45-249 (250)
6 PLN00147 light-harvesting comp 100.0 1.5E-58 3.3E-63 428.0 18.8 206 24-249 36-251 (252)
7 PLN00097 photosystem I light h 100.0 1.2E-58 2.6E-63 426.5 16.2 197 27-244 38-243 (244)
8 PLN00048 photosystem I light h 100.0 6.9E-59 1.5E-63 432.5 14.2 211 25-249 34-261 (262)
9 PLN00099 light-harvesting comp 100.0 3.6E-57 7.7E-62 417.1 16.4 210 14-247 25-236 (243)
10 PLN00100 light-harvesting comp 100.0 2E-55 4.4E-60 404.9 15.3 186 23-248 25-210 (246)
11 PLN00170 photosystem II light- 100.0 8.1E-47 1.7E-51 349.7 15.8 181 29-232 47-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 7.6E-41 1.6E-45 303.2 13.2 159 43-229 45-208 (209)
13 PF00504 Chloroa_b-bind: Chlor 100.0 2.4E-40 5.3E-45 285.5 12.7 153 44-221 1-156 (156)
14 PLN00120 fucoxanthin-chlorophy 100.0 6.5E-35 1.4E-39 263.4 12.5 148 57-229 46-199 (202)
15 PLN00098 light-harvesting comp 99.7 1.6E-18 3.5E-23 162.4 7.2 112 174-285 76-237 (267)
16 PLN00147 light-harvesting comp 99.7 5.3E-17 1.1E-21 151.2 7.0 53 174-226 59-111 (252)
17 PLN00171 photosystem light-ha 99.7 4.4E-17 9.6E-22 155.7 6.4 54 174-227 124-177 (324)
18 PLN00097 photosystem I light h 99.6 1.7E-16 3.7E-21 147.1 6.2 112 174-285 58-219 (244)
19 PLN00187 photosystem II light- 99.6 2.8E-16 6.1E-21 148.4 6.6 113 174-286 66-258 (286)
20 PLN00025 photosystem II light 99.6 4.4E-16 9.6E-21 145.7 7.2 113 174-286 67-229 (262)
21 PLN00048 photosystem I light h 99.6 3.1E-16 6.8E-21 146.8 5.9 112 174-286 56-233 (262)
22 PLN00170 photosystem II light- 99.6 4.2E-16 9E-21 145.2 6.4 53 174-226 71-123 (255)
23 PLN00099 light-harvesting comp 99.6 4.4E-16 9.5E-21 144.5 6.5 112 174-286 58-209 (243)
24 PLN00089 fucoxanthin-chlorophy 99.6 2E-15 4.2E-20 137.5 7.7 109 178-286 54-200 (209)
25 PLN00101 Photosystem I light-h 99.6 2.2E-15 4.8E-20 140.2 6.0 55 174-228 67-121 (250)
26 PLN00100 light-harvesting comp 99.5 8.3E-15 1.8E-19 135.9 7.1 50 174-223 49-98 (246)
27 PF00504 Chloroa_b-bind: Chlor 99.5 2.2E-14 4.9E-19 123.8 5.4 49 176-225 8-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.4 4E-13 8.6E-18 121.9 3.7 44 177-221 42-87 (202)
29 PHA02337 putative high light i 98.2 1.8E-06 3.8E-11 57.8 3.4 28 200-227 4-31 (35)
30 PLN00084 photosystem II subuni 97.9 9.7E-06 2.1E-10 72.0 3.4 46 194-239 131-177 (214)
31 PLN00014 light-harvesting-like 97.5 6.6E-05 1.4E-09 69.5 3.4 36 198-233 159-194 (250)
32 PHA02337 putative high light i 97.3 0.00018 3.9E-09 48.2 2.7 28 74-101 3-30 (35)
33 PLN00014 light-harvesting-like 95.7 0.0047 1E-07 57.5 1.4 30 74-103 160-189 (250)
34 PLN00084 photosystem II subuni 92.9 0.062 1.3E-06 48.2 2.0 36 69-104 131-167 (214)
35 PLN02449 ferrochelatase 51.8 10 0.00023 39.1 2.4 22 208-229 463-484 (485)
36 PF14602 Hexapep_2: Hexapeptid 23.9 45 0.00099 21.7 1.2 12 287-298 1-12 (34)
37 PF10870 DUF2729: Protein of u 23.0 53 0.0012 23.9 1.4 12 289-300 39-51 (53)
No 1
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.5e-74 Score=545.09 Aligned_cols=248 Identities=85% Similarity=1.464 Sum_probs=230.5
Q ss_pred CccchHHHhhhchHHHHHHhhhcccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhh
Q 021923 1 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 80 (305)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKH 80 (305)
|||+||++++++++++++++++|+.+.||+++|++|||+++++.|+||||++|||+|||||||++|+++++|||++||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkH 155 (324)
T PLN00171 76 LEETKKAAVEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILH 155 (324)
T ss_pred HHHhhHHHHHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999887889999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhhhhhhhccCccccCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhccc
Q 021923 81 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCG 160 (305)
Q Consensus 81 GRvAMLAvvG~lv~E~l~~~G~~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~ 160 (305)
|||||||++|+++||++++.|.+++++|.||++|+..+++..++|+++|+...++.+.+.+++++|+++|+++|+.|+.+
T Consensus 156 GR~AMLA~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~ 235 (324)
T PLN00171 156 ARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCG 235 (324)
T ss_pred chHHHHHHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeecc
Confidence 99999999999999999888878888899999998877777788888887555667888899999999999999999988
Q ss_pred ccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccc
Q 021923 161 IEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLH 240 (305)
Q Consensus 161 ~~~~~~~g~~~pGD~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~ 240 (305)
+...++.+.+.|||..||||.+|||||+++|+++++++|++|||||||||+|++||++|+.+||++|++||.+|++||+|
T Consensus 236 ~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~ 315 (324)
T PLN00171 236 IEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLH 315 (324)
T ss_pred ccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccc
Confidence 75545445677999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcc
Q 021923 241 NNLLSMVK 248 (305)
Q Consensus 241 ~n~~~~~~ 248 (305)
|||++++.
T Consensus 316 ~Ni~~~~~ 323 (324)
T PLN00171 316 NNLLSSLK 323 (324)
T ss_pred cchHHHhc
Confidence 99999864
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2.4e-63 Score=461.90 Aligned_cols=215 Identities=52% Similarity=0.938 Sum_probs=188.5
Q ss_pred ccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCcc
Q 021923 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 103 (305)
Q Consensus 24 ~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~ 103 (305)
+.+.||+++|++|||+++.+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|++++|+++..| +
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g-~ 120 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG-V 120 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC-c
Confidence 567899999999998766679999999999999999999999999999999999999999999999999999988766 4
Q ss_pred ccCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCC
Q 021923 104 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 183 (305)
Q Consensus 104 ~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~gF 183 (305)
.|.++.||++|...++...++|++.|.+. ..+.+..+.++|+++|+++|.+|+.+. +.+ ...|..||||+ |
T Consensus 121 ~~~~~~W~~ag~~~~~~gg~~y~~~p~~~--~~~~~~a~~~~qv~lmg~~E~~r~~~~----~~~--~~~d~~yPG~~-F 191 (262)
T PLN00025 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLV--HAQSILAIWACQVVLMGAVEGYRVNGG----PLG--EGLDPLYPGGS-F 191 (262)
T ss_pred CcCcccccccccccccccccccccCcccc--hhhhHHHHHHHHHHHHHHHHHhcccCC----ccc--ccccCcCCccc-C
Confidence 57778999999876666677888877532 235566778889999999999987652 111 12366899998 9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhcc
Q 021923 184 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248 (305)
Q Consensus 184 DPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 248 (305)
||||+++|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||++++..
T Consensus 192 DPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~ 256 (262)
T PLN00025 192 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYAT 256 (262)
T ss_pred CccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998764
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=7.9e-61 Score=449.09 Aligned_cols=201 Identities=42% Similarity=0.722 Sum_probs=172.1
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHH---------------------------------
Q 021923 23 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA--------------------------------- 69 (305)
Q Consensus 23 ~~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~--------------------------------- 69 (305)
...++||+++|++|+|+ .+.|+||||++|||||||||||++||+.
T Consensus 42 ~~~~~~~~~~r~~w~p~--~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
T PLN00187 42 KKKSSKVGADRPLWFPG--AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKST 119 (286)
T ss_pred ccCccCCCCCccccCCC--CCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhccccccccccccccccccc
Confidence 34578999999999986 5799999999999999999999998885
Q ss_pred ----------HHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccccCcchhhhhcccccccccccccCCCcccccchhhH
Q 021923 70 ----------FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 139 (305)
Q Consensus 70 ----------l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v 139 (305)
++||||+|||||||||||++||++||+++ | -.||++|...+.+. ..|++.|. ...+
T Consensus 120 ~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G------~~W~~aG~~~~~~g-~~y~g~~~-----p~~~ 185 (286)
T PLN00187 120 PFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--G------VTWQDAGKVELVDG-SSYLGQPL-----PFSI 185 (286)
T ss_pred ccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--C------Cccccccccccccc-cccccccc-----chhH
Confidence 69999999999999999999999999964 3 25999987654322 23655442 1234
Q ss_pred HHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 021923 140 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQ 219 (305)
Q Consensus 140 ~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQ 219 (305)
..+.++|+++|+++|.+|+.+. + ..|..||||++|||||+++|+++++++|++|||||||||+|++||++|
T Consensus 186 ~~l~~iqvllmG~~E~~R~~~~---~------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq 256 (286)
T PLN00187 186 TTLIWIEVLVIGYIEFQRNAEL---D------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQ 256 (286)
T ss_pred HHHHHHHHHHHHHHHhhhccCC---C------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5678899999999999997642 1 235679999889999999999999999999999999999999999999
Q ss_pred hhhcCCCchhhhhhhhcCccccchhhhcc
Q 021923 220 AAFTGKGPVQNLLDHISDPLHNNLLSMVK 248 (305)
Q Consensus 220 e~vTG~gPl~nL~~hladP~~~n~~~~~~ 248 (305)
+++||+||++||.+|++||+||||++++.
T Consensus 257 ~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 257 AAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred HHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 99999999999999999999999999875
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=3.6e-60 Score=441.59 Aligned_cols=204 Identities=38% Similarity=0.704 Sum_probs=172.6
Q ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccc
Q 021923 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104 (305)
Q Consensus 25 ~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~ 104 (305)
...+|+++|++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..|.
T Consensus 54 ~~~~~~~~r~~w~Pg--~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-- 129 (267)
T PLN00098 54 VCEPLPPDRPLWFPG--SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-- 129 (267)
T ss_pred ccccCCCCccccCCC--CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc--
Confidence 446899999999987 5799999999999999999999999999999999999999999999999999999887774
Q ss_pred cCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC-------ccC-CCCCC
Q 021923 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-------IFL-PGDIN 176 (305)
Q Consensus 105 f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g-------~~~-pGD~~ 176 (305)
+..+.||++|.. +|+..|. .+.++|+++|+++|..|+.++......+ ... .+|.+
T Consensus 130 ~~~~~w~~Ag~~-------~~~~~~~----------~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~ 192 (267)
T PLN00098 130 IENFSWYDAGAR-------EYFADPT----------TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVG 192 (267)
T ss_pred ccccccccccch-------hhccCch----------HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCC
Confidence 345679988753 2333321 3467899999999999987753211110 011 23668
Q ss_pred CCCCCCCCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhccc
Q 021923 177 YPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249 (305)
Q Consensus 177 ~PGg~gFDPLgl~k-dpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 249 (305)
||||++||||++.+ |+++++++|+||||||||||+|++||++|+.+||++|++||.+||+||+|+||++++++
T Consensus 193 yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 193 YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999999999975 89999999999999999999999999999999999999999999999999999998874
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.1e-59 Score=433.03 Aligned_cols=197 Identities=40% Similarity=0.777 Sum_probs=168.2
Q ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccc
Q 021923 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104 (305)
Q Consensus 25 ~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~ 104 (305)
.+.++.++|++|+|. .+.|+||||++|||+|||||||++|+++++|||++||+||||||||++|+++||+++..|.+.
T Consensus 45 ~~~~~~~~r~~W~P~--~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~ 122 (250)
T PLN00101 45 RSFKVEAKKGEWLPG--LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122 (250)
T ss_pred ccccccccccccCCC--CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcC
Confidence 567899999999986 469999999999999999999999999999999999999999999999999999998877543
Q ss_pred cCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCC-----C--C-ccCCCCCC
Q 021923 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP-----L--G-IFLPGDIN 176 (305)
Q Consensus 105 f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~-----~--g-~~~pGD~~ 176 (305)
.|.||++|... |+..+ ..+.++|+++|+++|.+|+.++...+. . + ...+||..
T Consensus 123 --~p~w~~ag~~~-------~~~~~----------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~ 183 (250)
T PLN00101 123 --APQWYDAGKAE-------YFASS----------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 183 (250)
T ss_pred --CCccccccchh-------hcccc----------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCcccc
Confidence 46899987532 32211 235677888999999999987653211 1 1 12367889
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhc
Q 021923 177 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247 (305)
Q Consensus 177 ~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~ 247 (305)
||||. ||||||+++ +++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++++
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhc
Confidence 99995 999999875 4789999999999999999999999999999999999999999999999985
No 6
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.5e-58 Score=427.95 Aligned_cols=206 Identities=41% Similarity=0.719 Sum_probs=171.7
Q ss_pred ccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCcc
Q 021923 24 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 103 (305)
Q Consensus 24 ~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~ 103 (305)
..+..++++|++|+|. .++|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..|..
T Consensus 36 ~~~~~~~~~R~~wlP~--~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 36 GINPVVAQERPTWLPG--LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred cCcccCCCCccccCCC--CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 3456889999999986 46999999999999999999999999999999999999999999999999999998877753
Q ss_pred ccCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCC---Ccc-------CCC
Q 021923 104 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL---GIF-------LPG 173 (305)
Q Consensus 104 ~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~---g~~-------~pG 173 (305)
. .|.||++|...+ ++ . ....++++|+++++.+|..|+.++...... +.+ ..-
T Consensus 114 ~--~p~w~~ag~~~~-----~~-~----------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~ 175 (252)
T PLN00147 114 N--LPVWYEAGAVKF-----EF-A----------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGL 175 (252)
T ss_pred C--Ccchhhcccchh-----cc-c----------cchHHHHHHHHHHHHHHHHhhccccCCCcccccccccccccccccc
Confidence 3 468998764321 11 0 113456889888888999998765421110 000 012
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhccc
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 249 (305)
|..||||++||||||++|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+||||+++++.
T Consensus 176 ~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 176 EPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred CCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999998763
No 7
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.2e-58 Score=426.45 Aligned_cols=197 Identities=39% Similarity=0.630 Sum_probs=167.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccccC
Q 021923 27 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 106 (305)
Q Consensus 27 ~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~f~ 106 (305)
.-..++|++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..|.. .
T Consensus 38 ~~~~~~R~~w~Pg--~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~--~ 113 (244)
T PLN00097 38 VAAAADRPTWLPG--KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA--D 113 (244)
T ss_pred cccCCCCcccCCC--CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc--c
Confidence 3455899999986 57999999999999999999999999999999999999999999999999999999887753 3
Q ss_pred cchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhccccccc-----CCC----CccCCCCCCC
Q 021923 107 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEAL-----EPL----GIFLPGDINY 177 (305)
Q Consensus 107 ~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~-----~~~----g~~~pGD~~~ 177 (305)
.+.||++|... .|+. + ...+..+|+++|+++|.+|+.++... ++. ....++|.+|
T Consensus 114 ~p~W~~Ag~~~------~~~~-~---------~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gY 177 (244)
T PLN00097 114 LPNWIDAAKWD------GYWA-G---------AGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGY 177 (244)
T ss_pred CCccccCCcch------hccc-c---------chhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCC
Confidence 46899987431 1211 1 12356778888999999999876431 111 1234678899
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchh
Q 021923 178 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 244 (305)
Q Consensus 178 PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~ 244 (305)
||+. |||||+.+|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+|||++
T Consensus 178 Pgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 178 PKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 9995 99999999999999999999999999999999999999999999999999999999999987
No 8
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=6.9e-59 Score=432.52 Aligned_cols=211 Identities=42% Similarity=0.672 Sum_probs=173.4
Q ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChH------HHHHHHHHHHhhchhHHHHhhhhhhhhhhh
Q 021923 25 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM------AFQKYFNFEILHARWAMLGALGALVPEVLD 98 (305)
Q Consensus 25 ~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~------~l~~~ReAELKHGRvAMLAvvG~lv~E~l~ 98 (305)
...+|+++|++|+|+ .+.|+||||++|||+|||||||++ ++ +.+|+|++|||||||||||++|+++||+++
T Consensus 34 ~~~~~~~~r~~w~p~--~~~P~yLdG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 34 PPAKQGADRQLWFAS--KQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCCCceecCC--CCCccccCCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 457889999999986 579999999999999999999984 43 579999999999999999999999999998
Q ss_pred ccCccccC-cchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC--------c
Q 021923 99 MVGAFHLV-EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------I 169 (305)
Q Consensus 99 ~~G~~~f~-~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g--------~ 169 (305)
..|.+... ...||++|.... ....+|+..| ..+.++|+++|+++|.+|++++......+ .
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p----------~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~ 179 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIPP-AGTYDYWADP----------YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEK 179 (262)
T ss_pred cCCcccccccccccccccccc-ccccccccch----------hHHHHHHHHHhhheeeeccccccCCCcccccccccchh
Confidence 77764322 236999886322 2234454443 13567888899999999988753321110 0
Q ss_pred cC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhc
Q 021923 170 FL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 247 (305)
Q Consensus 170 ~~--pGD~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~ 247 (305)
.. .+|..||||++|||||+++|+++++++|++|||||||||+|++||++|+++||+||++||.+||+||+||||++++
T Consensus 180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~ 259 (262)
T PLN00048 180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259 (262)
T ss_pred ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccc
Confidence 11 1367899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 021923 248 KS 249 (305)
Q Consensus 248 ~~ 249 (305)
++
T Consensus 260 ~~ 261 (262)
T PLN00048 260 KF 261 (262)
T ss_pred cc
Confidence 64
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=3.6e-57 Score=417.14 Aligned_cols=210 Identities=39% Similarity=0.662 Sum_probs=167.1
Q ss_pred HHHHHHhhhcccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhh
Q 021923 14 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 93 (305)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv 93 (305)
++.+..+-++....-+.++|..|+|. .+.|+||||++|||+|||||||++++++++|||++|||||||||||++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~w~P~--~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~ 102 (243)
T PLN00099 25 KFASSVPLPNANGSSRVTMSADWMPG--QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILV 102 (243)
T ss_pred hhhcccccccCCccccccccccccCC--CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHH
Confidence 34333333343333556788999986 4699999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCccccCcchhhhhccc-ccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCC
Q 021923 94 PEVLDMVGAFHLVEPVWWRVGYS-KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLP 172 (305)
Q Consensus 94 ~E~l~~~G~~~f~~p~w~~aG~~-~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~p 172 (305)
||+++. +.|++++.. .+++...+|++.|. ....++.++++|+++++.+|..|+... .+
T Consensus 103 ~E~l~~--------~~w~~a~~~~~~~~g~~~~~g~~~----~~~~l~~~~~iqvl~ig~~E~~r~~~~---------~~ 161 (243)
T PLN00099 103 PEALGL--------GNWVKAQEWAAIPGGQATYLGNPV----PWGTLPTILAIEFLAIAFVEHQRSMEK---------DP 161 (243)
T ss_pred HHHhcc--------CCcccccchhccCcchhhhccCcc----chhhHHHHHHHHHHHHHHHHHHhhccC---------CC
Confidence 998642 257766531 22232334544432 123466778899888888898775321 12
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hhcCCCchhhhhhhhcCccccchhhhc
Q 021923 173 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMV 247 (305)
Q Consensus 173 GD~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe-~vTG~gPl~nL~~hladP~~~n~~~~~ 247 (305)
.+..|||| +|||||+.+|+++++++|+||||||||||+||+||++|+ .+||++|++||.+|++||+|+|+++..
T Consensus 162 ~~~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~ 236 (243)
T PLN00099 162 EKKKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 236 (243)
T ss_pred CCCcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeee
Confidence 34569999 799999999999999999999999999999999999999 579999999999999999999999875
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=2e-55 Score=404.86 Aligned_cols=186 Identities=35% Similarity=0.621 Sum_probs=156.8
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCc
Q 021923 23 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102 (305)
Q Consensus 23 ~~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~ 102 (305)
+....--.++|++|+|. .+.|+||||++|||+|||||||++++++++|||++|||||||||||++|+++||+++
T Consensus 25 ~~~~~~~~~~r~~W~P~--~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~---- 98 (246)
T PLN00100 25 RPRVRVAARARPMWYPG--ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG---- 98 (246)
T ss_pred ccccccccCCCcccCCC--CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc----
Confidence 34445667889999986 479999999999999999999999999999999999999999999999999999853
Q ss_pred cccCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCC
Q 021923 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182 (305)
Q Consensus 103 ~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~g 182 (305)
+ |.||++|... |. . .+..++++|+++++.+|..|+.++. .+|+.++||+++
T Consensus 99 --~--P~w~~ag~~~-------~~-~---------~~~~l~~iqill~g~~E~~r~~~~~--------~~g~~~~pg~~~ 149 (246)
T PLN00100 99 --L--PKFWEAGAEK-------YG-L---------DLQTLVLIQVVVMAVLEAARYRGFM--------KTGESGVLSFFP 149 (246)
T ss_pred --c--cchhhcchhh-------hc-c---------chhHHHHHHHHHHHHHhhhcccccc--------cccccCCCCCCC
Confidence 2 4688876432 10 0 1234678899988889999887642 134456788999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhcc
Q 021923 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248 (305)
Q Consensus 183 FDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 248 (305)
|||||+++ +++|+||||||||||+||+||++|+++||++|++||.+|++||+|+|++++..
T Consensus 150 FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~~ 210 (246)
T PLN00100 150 FDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSSV 210 (246)
T ss_pred CCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCCC
Confidence 99999963 57999999999999999999999999999999999999999999999998743
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=8.1e-47 Score=349.70 Aligned_cols=181 Identities=37% Similarity=0.597 Sum_probs=147.4
Q ss_pred cCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccc
Q 021923 29 YGEERPRWLGPIP----YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104 (305)
Q Consensus 29 ~~~~r~~~~~~~~----~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~ 104 (305)
..++|++|+|... ...|+||||++|||+|||||||++|+++++|||++||+||||||||++|+++||+++ |
T Consensus 47 a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g--- 121 (255)
T PLN00170 47 AAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G--- 121 (255)
T ss_pred ccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C---
Confidence 4477889998642 247999999999999999999999999999999999999999999999999999964 2
Q ss_pred cCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCC-----C---C------cc
Q 021923 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP-----L---G------IF 170 (305)
Q Consensus 105 f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~-----~---g------~~ 170 (305)
..||++|.... +. .| ..+.++..+|+++|+++|.+|+.++...+. . . ..
T Consensus 122 ---~~w~~aG~~~~------~~-~p-------~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~ 184 (255)
T PLN00170 122 ---IPWFEAGADPG------AI-AP-------FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFAN 184 (255)
T ss_pred ---CChhhCCcccc------cc-Cc-------cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccc
Confidence 25999886421 11 11 123456788999999999999988753211 0 0 01
Q ss_pred CCCCCCCCCCCCCCCCCCCC---------CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhh
Q 021923 171 LPGDINYPGGALFDPLNLSK---------DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 232 (305)
Q Consensus 171 ~pGD~~~PGg~gFDPLgl~k---------dpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~ 232 (305)
..|+..|||+..||||||++ |+++++++|+||||||||||+|++||++|+ .||++|++||.
T Consensus 185 ~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 185 ATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 24677899997899999985 788999999999999999999999999999 79999999873
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=7.6e-41 Score=303.24 Aligned_cols=159 Identities=29% Similarity=0.353 Sum_probs=117.1
Q ss_pred CCCCCCCCCCCCCCCCCccCCCC-ChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCcc-ccCcchhhhhccccccc
Q 021923 43 DYPSYLTGELPGDYGFDVAGLSK-DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYSKLQG 120 (305)
Q Consensus 43 ~~P~~LdGs~pGd~gFDPLGLs~-d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~-~f~~p~w~~aG~~~~~~ 120 (305)
+.|+.|||+ .||++||||||++ ++++++|||++|||||||||||++|+++||.++.+|.+ .|.
T Consensus 45 ~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~-------------- 109 (209)
T PLN00089 45 AKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFA-------------- 109 (209)
T ss_pred cCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcccccc--------------
Confidence 357789999 9999999999986 57789999999999999999999999999997776632 111
Q ss_pred ccccccCCCcccccchhhHHHHH-HHHHHHhhc-chhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCC-CCHHHHHH
Q 021923 121 ETLDYLGIPGLHLAGSQGVIVIA-ICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS-KDPVAFEE 197 (305)
Q Consensus 121 ~~l~~~~~p~~~~a~~~~v~~i~-~~qi~l~~~-~E~~r~~~~~~~~~~g~~~pGD~~~PGg~gFDPLgl~-kdpe~~~~ 197 (305)
+.|.. ....+.++..+ ++|++++++ +|........ .....+ ..+|||++||||++. +|++++++
T Consensus 110 ------~~p~~-~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~~-----~~~~~~-~~~PGd~gfdplgl~~~d~~~~~~ 176 (209)
T PLN00089 110 ------AIPKT-IDAHDALLKSGAMIQIFAWIGFVDLAVSAPAA-----AAAAEF-DRTPGDFGFDLLALYPKDAAKMEK 176 (209)
T ss_pred ------ccccH-HHHHHhhcccccHHHHHHHHHHHHHHHhhccc-----cccccC-CCCCCCcCccccccCCCCHHHHHH
Confidence 11110 00111122222 568877655 4753221100 001122 358999999999995 68999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhcCCCchh
Q 021923 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 229 (305)
Q Consensus 198 ~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~ 229 (305)
+|++|||||||||+||+|+++|+++||+++++
T Consensus 177 ~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 177 KKDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999998763
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=2.4e-40 Score=285.47 Aligned_cols=153 Identities=44% Similarity=0.671 Sum_probs=112.7
Q ss_pred CCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCc-cccC-cchhhhhcccccccc
Q 021923 44 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA-FHLV-EPVWWRVGYSKLQGE 121 (305)
Q Consensus 44 ~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~-~~f~-~p~w~~aG~~~~~~~ 121 (305)
+|++|||+++||+||||+||++++ +++|||++|||||||||||++|++++|+++..+. ..+. .+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 499999999999999999999877 9999999999999999999999999999754321 1111 123433210
Q ss_pred cccccCCCcccccchhhHHHHHHHHHHHhhc-chhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021923 122 TLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 200 (305)
Q Consensus 122 ~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~-~E~~r~~~~~~~~~~g~~~pGD~~~PGg~gFDPLgl~kdpe~~~~~k~ 200 (305)
+ + ++..+++|++++++ +|..+..........+ ..+..|||+++|||+++.+|+++++++|+
T Consensus 74 -~-----~---------~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~---~~~~~~pG~~~~dplgl~~~~~~~~~~~~ 135 (156)
T PF00504_consen 74 -I-----P---------VPAAGWAQILLFIGALEPWRQQGVPEPGEGG---GKDGRYPGDLGFDPLGLAKDPEEKEFMQL 135 (156)
T ss_dssp -S-----S---------SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS---SSSSSSSSSSSSSTSSTSSSCHSHHCHHH
T ss_pred -h-----h---------hhhHHHHHHHHHHhHhhhhhcccccCCcccc---cccccCccccccchhhhhhhhhhhHHHHH
Confidence 0 0 12234556655544 5887765432111101 23457999999999999988999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhh
Q 021923 201 KEIKNGRLAMVAWLGFYIQAA 221 (305)
Q Consensus 201 kEIKNGRLAMlA~~G~vaQe~ 221 (305)
+|||||||||+||+|+++|+.
T Consensus 136 ~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 136 AELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999983
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=6.5e-35 Score=263.39 Aligned_cols=148 Identities=26% Similarity=0.358 Sum_probs=105.1
Q ss_pred CCCccCCCC--ChHHHHHHHHHHHhhchhHHHHhhhhhhhhh-hhccCccccCcchhhhhcccccccccccccCCCcccc
Q 021923 57 GFDVAGLSK--DPMAFQKYFNFEILHARWAMLGALGALVPEV-LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 133 (305)
Q Consensus 57 gFDPLGLs~--d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~-l~~~G~~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~ 133 (305)
.|||+||++ |+++++|||++|||||||||||++|+++||. ++.+|.+.+ .+. .+.++|.. .
T Consensus 46 ~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~-------------~g~--~~~~~p~~-~ 109 (202)
T PLN00120 46 FFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDY-------------SGT--SFSDIPNG-F 109 (202)
T ss_pred CCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCcccc-------------ccc--cccccccc-h
Confidence 399999974 7899999999999999999999999999997 333332211 111 12222221 1
Q ss_pred cchhhHHHHHHHHHHHhhcc-hhhhcccccccCCCCccCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHhhhHHHH
Q 021923 134 AGSQGVIVIAICQALLMVGP-ECARYCGIEALEPLGIFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAM 210 (305)
Q Consensus 134 a~~~~v~~i~~~qi~l~~~~-E~~r~~~~~~~~~~g~~~pGD~~~PG--g~gFDPLgl~kdpe~~~~~k~kEIKNGRLAM 210 (305)
.....++..+++|+++++++ |+.+..+... ..+.|||.. || |++|||+ |+++++++|+||||||||||
T Consensus 110 ~a~~~vp~~g~~qi~~~ig~~E~~~~~~~~~----~~~~pGd~~-~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAM 180 (202)
T PLN00120 110 AALDAIPTAGLLQILAFIGFLELAVMKDITG----EGEFVGDFR-NGYIDFGWDSF----DEETKLKKRAIELNQGRAAQ 180 (202)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHhhccccc----CCCCCCccC-CCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 22344566788999988764 8765433210 123455431 23 5566665 68889999999999999999
Q ss_pred HHHHHHHHhhhhcCCCchh
Q 021923 211 VAWLGFYIQAAFTGKGPVQ 229 (305)
Q Consensus 211 lA~~G~vaQe~vTG~gPl~ 229 (305)
|||+||++|+.++|+.|+-
T Consensus 181 iai~G~~~qe~l~g~~~~~ 199 (202)
T PLN00120 181 MGILALMVHEQLGVELPII 199 (202)
T ss_pred HHHHHHHHHHHccCCCcCC
Confidence 9999999999999998863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.75 E-value=1.6e-18 Score=162.37 Aligned_cols=112 Identities=26% Similarity=0.310 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhh-------hhhhcCccccchhhh
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL-------LDHISDPLHNNLLSM 246 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL-------~~hladP~~~n~~~~ 246 (305)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++||++++.+++++. .++++||....+++.
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~ 155 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQM 155 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHH
Confidence 4468999999999999999999999999999999999999999999999988776532 224556643221111
Q ss_pred c---------------------------------------ccCCCCC----CChhhhhhcccccccchhhhHHhhhhccc
Q 021923 247 V---------------------------------------KSMDDPS----GCPLERMRRCQFRCNQTRRSLVLSMLTIT 283 (305)
Q Consensus 247 ~---------------------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (305)
+ +..+||- +.+.++.+-.--|+||+|.+|++.++++.
T Consensus 156 ~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~ 235 (267)
T PLN00098 156 VLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF 235 (267)
T ss_pred HHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0 0012332 24445555567899999999999999987
Q ss_pred cc
Q 021923 284 PK 285 (305)
Q Consensus 284 ~~ 285 (305)
.+
T Consensus 236 q~ 237 (267)
T PLN00098 236 QA 237 (267)
T ss_pred hh
Confidence 65
No 16
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.68 E-value=5.3e-17 Score=151.19 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCC
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~g 226 (305)
|..+|||++||||||++|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 55689999999999999999999999999999999999999999999998754
No 17
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.67 E-value=4.4e-17 Score=155.71 Aligned_cols=54 Identities=39% Similarity=0.454 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCc
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 227 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gP 227 (305)
|...|||+|||||||++|+++++++|.+||||||+||||++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 446899999999999999999999999999999999999999999999886543
No 18
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.64 E-value=1.7e-16 Score=147.07 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCch--hhhhh------hhcCccc---cc
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV--QNLLD------HISDPLH---NN 242 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl--~nL~~------hladP~~---~n 242 (305)
|...|||++||||||++|+++++++|.+||||||+||+|++|+++||++++.+.. .++.+ .+.++.. ..
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~ 137 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQ 137 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHH
Confidence 3457999999999999999999999999999999999999999999999986542 11111 0111100 00
Q ss_pred hh------------------------------------hhcccCCCC---CCChhhhhhcccccccchhhhHHhhhhccc
Q 021923 243 LL------------------------------------SMVKSMDDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTIT 283 (305)
Q Consensus 243 ~~------------------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (305)
++ .+....+|| +..+.+..+..--|+||+|.+|++.++++.
T Consensus 138 ~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~ 217 (244)
T PLN00097 138 MAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCA 217 (244)
T ss_pred HHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 00 011111333 234556667777899999999999999987
Q ss_pred cc
Q 021923 284 PK 285 (305)
Q Consensus 284 ~~ 285 (305)
..
T Consensus 218 q~ 219 (244)
T PLN00097 218 QA 219 (244)
T ss_pred hh
Confidence 65
No 19
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.63 E-value=2.8e-16 Score=148.43 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHH-------------------------------------------HHHHHHHHHhhhHHHH
Q 021923 174 DINYPGGALFDPLNLSKDPVA-------------------------------------------FEELKVKEIKNGRLAM 210 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~-------------------------------------------~~~~k~kEIKNGRLAM 210 (305)
|..+|||+|||||||+++|+. ++++|..||+|||+||
T Consensus 66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM 145 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM 145 (286)
T ss_pred cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence 345899999999999999885 5999999999999999
Q ss_pred HHHHHHHHhhhhcCCCchhh----h---hhhhcCccccchhh--------------------------hc-ccCCCC---
Q 021923 211 VAWLGFYIQAAFTGKGPVQN----L---LDHISDPLHNNLLS--------------------------MV-KSMDDP--- 253 (305)
Q Consensus 211 lA~~G~vaQe~vTG~gPl~n----L---~~hladP~~~n~~~--------------------------~~-~~~~~~--- 253 (305)
||++|+++||+++|..-.+. + ...+.+|....+.+ +. ...+|+
T Consensus 146 LAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~~~~~~yPGg~~FDPlGl 225 (286)
T PLN00187 146 LATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGL 225 (286)
T ss_pred HHhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccccccc
Confidence 99999999999886411000 0 12334443221100 00 101333
Q ss_pred CCChhhhhhcccccccchhhhHHhhhhccccce
Q 021923 254 SGCPLERMRRCQFRCNQTRRSLVLSMLTITPKK 286 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
+..+.++.+-+..|+||||.+|++.++++.++.
T Consensus 226 ~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~ 258 (286)
T PLN00187 226 AADPEKKETLQLAEIKHARLAMVAFLGFAVQAA 258 (286)
T ss_pred CCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 345666677778899999999999999998764
No 20
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.63 E-value=4.4e-16 Score=145.70 Aligned_cols=113 Identities=20% Similarity=0.213 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCc-hh--hh------------hhhhcCc
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP-VQ--NL------------LDHISDP 238 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gP-l~--nL------------~~hladP 238 (305)
|..+|||+|||||||++|+++++++|.+||||||+||+|++|+++||++++.+. +. .| .+.+++|
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p 146 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 146 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCc
Confidence 345799999999999999999999999999999999999999999999986543 11 11 1234444
Q ss_pred ccc---chh-------------h----------------hcccCCCC---CCChhhhhhcccccccchhhhHHhhhhccc
Q 021923 239 LHN---NLL-------------S----------------MVKSMDDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTIT 283 (305)
Q Consensus 239 ~~~---n~~-------------~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (305)
... .+. . +....+|+ +..+.++.+-.--|+||+|.+|++.++++.
T Consensus 147 ~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~ 226 (262)
T PLN00025 147 SLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 226 (262)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 110 000 0 00001233 334555666677899999999999999988
Q ss_pred cce
Q 021923 284 PKK 286 (305)
Q Consensus 284 ~~~ 286 (305)
.+.
T Consensus 227 q~~ 229 (262)
T PLN00025 227 QAI 229 (262)
T ss_pred hhh
Confidence 763
No 21
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.62 E-value=3.1e-16 Score=146.83 Aligned_cols=112 Identities=22% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCCCCCCCCCCCCCCCCCHH------HHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhh---------------
Q 021923 174 DINYPGGALFDPLNLSKDPV------AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL--------------- 232 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe------~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~--------------- 232 (305)
|...|||++||||||++ ++ +.+.++.+||+|||+||+|++|+++||++++.+.+.+..
T Consensus 56 dG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~ 134 (262)
T PLN00048 56 DGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGT 134 (262)
T ss_pred CCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccc
Confidence 34579999999999974 32 456788999999999999999999999999877654221
Q ss_pred -hhhcCccccchhh----------------------------------------hc-ccCCCC---CCChhhhhhccccc
Q 021923 233 -DHISDPLHNNLLS----------------------------------------MV-KSMDDP---SGCPLERMRRCQFR 267 (305)
Q Consensus 233 -~hladP~~~n~~~----------------------------------------~~-~~~~~~---~~~~~~~~~~~~~~ 267 (305)
+++++|....++. +. ...+|+ +..+.+..+.+..|
T Consensus 135 ~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~E 214 (262)
T PLN00048 135 YDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKE 214 (262)
T ss_pred cccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHH
Confidence 1233332110000 00 001333 33455667777889
Q ss_pred ccchhhhHHhhhhccccce
Q 021923 268 CNQTRRSLVLSMLTITPKK 286 (305)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (305)
+||+|.+|++.++++..+.
T Consensus 215 iknGRLAM~A~~G~~~q~~ 233 (262)
T PLN00048 215 VKNGRLAMLAILGYFIQAL 233 (262)
T ss_pred HhhhHHHHHHhhhHhhhhh
Confidence 9999999999999998874
No 22
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.62 E-value=4.2e-16 Score=145.22 Aligned_cols=53 Identities=38% Similarity=0.623 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCC
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 226 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~g 226 (305)
|..+|||++||||+|.+|++.++++|.+||+|||+||+|++|+++|++++|..
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 34689999999999999999999999999999999999999999999999863
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.62 E-value=4.4e-16 Score=144.45 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCch-h---------hhhhhhcCccccc-
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV-Q---------NLLDHISDPLHNN- 242 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl-~---------nL~~hladP~~~n- 242 (305)
|...|||++||||+|++++++++++|.+||||||+||+|++|+++||+++. +++ + ...+.+.+|+...
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-~~w~~a~~~~~~~~g~~~~~g~~~~~~~ 136 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-GNWVKAQEWAAIPGGQATYLGNPVPWGT 136 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc-CCcccccchhccCcchhhhccCccchhh
Confidence 556899999999999999999999999999999999999999999999764 221 0 0122333443211
Q ss_pred ---h-------h---hh-------------cccCCCC---CCChhhhhhcccccccchhhhHHhhhhccccce
Q 021923 243 ---L-------L---SM-------------VKSMDDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTITPKK 286 (305)
Q Consensus 243 ---~-------~---~~-------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
+ + .. ....+|| +..+.+..+..--|+||||-+|++.++++..+.
T Consensus 137 l~~~~~iqvl~ig~~E~~r~~~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~ 209 (243)
T PLN00099 137 LPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQS 209 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 0 0 00 0001222 234444555556899999999999999887663
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.59 E-value=2e-15 Score=137.49 Aligned_cols=109 Identities=19% Similarity=0.119 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCch------hhh-hhhhcCcccc---chh--
Q 021923 178 PGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV------QNL-LDHISDPLHN---NLL-- 244 (305)
Q Consensus 178 PGg~gFDPLgl~k-dpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl------~nL-~~hladP~~~---n~~-- 244 (305)
.||.+|||||+++ ++++++++|.+||||||+||+|++|+++|+.++.-|-+ .+. ..|-+-|..- -++
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ 133 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAW 133 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHH
Confidence 5777899999986 56788999999999999999999999999998754322 111 1121222110 000
Q ss_pred ----h-----------------hcccCCCC----CCChhhhhhcccccccchhhhHHhhhhccccce
Q 021923 245 ----S-----------------MVKSMDDP----SGCPLERMRRCQFRCNQTRRSLVLSMLTITPKK 286 (305)
Q Consensus 245 ----~-----------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
. ..+..+|+ ++.+.+..+++.-|+||||-+|++.++.+..+.
T Consensus 134 ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~ 200 (209)
T PLN00089 134 IGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSA 200 (209)
T ss_pred HHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 0 00111333 335666666666699999999999999998873
No 25
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.57 E-value=2.2e-15 Score=140.17 Aligned_cols=55 Identities=35% Similarity=0.572 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCch
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 228 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl 228 (305)
|..+|||++||||||++|+++++++|++|||||||||||++|+++||++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4468999999999999999999999999999999999999999999999998776
No 26
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.54 E-value=8.3e-15 Score=135.88 Aligned_cols=50 Identities=36% Similarity=0.485 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhc
Q 021923 174 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 223 (305)
Q Consensus 174 D~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vT 223 (305)
|..+|||+|||||||++|+++++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 44689999999999999999999999999999999999999999999975
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.49 E-value=2.2e-14 Score=123.80 Aligned_cols=49 Identities=47% Similarity=0.720 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCC
Q 021923 176 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 225 (305)
Q Consensus 176 ~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~ 225 (305)
.++|+++|||++|++++ +++++|..||||||+||+|++|++++|+.++.
T Consensus 8 ~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 8 SVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 36888899999999887 89999999999999999999999999999884
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.35 E-value=4e-13 Score=121.87 Aligned_cols=44 Identities=43% Similarity=0.751 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCC--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 021923 177 YPGGALFDPLNLS--KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 221 (305)
Q Consensus 177 ~PGg~gFDPLgl~--kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~ 221 (305)
-|.++ |||+||+ +|+++++++|.+||||||+||+|++|+++|++
T Consensus 42 ~p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 42 APLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 35553 9999997 47889999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=98.18 E-value=1.8e-06 Score=57.79 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhcCCCc
Q 021923 200 VKEIKNGRLAMVAWLGFYIQAAFTGKGP 227 (305)
Q Consensus 200 ~kEIKNGRLAMlA~~G~vaQe~vTG~gP 227 (305)
..|+-||||||+||...+.-|++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999964
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.88 E-value=9.7e-06 Score=72.03 Aligned_cols=46 Identities=33% Similarity=0.431 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhc-CCCchhhhhhhhcCcc
Q 021923 194 AFEELKVKEIKNGRLAMVAWLGFYIQAAFT-GKGPVQNLLDHISDPL 239 (305)
Q Consensus 194 ~~~~~k~kEIKNGRLAMlA~~G~vaQe~vT-G~gPl~nL~~hladP~ 239 (305)
..++.|..|+.||||||+||+--++-|++| |+||+.|+...-.=|.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 457788889999999999999999999999 9999999876544443
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.53 E-value=6.6e-05 Score=69.50 Aligned_cols=36 Identities=36% Similarity=0.546 Sum_probs=32.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhh
Q 021923 198 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 233 (305)
Q Consensus 198 ~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~ 233 (305)
....|+-|||+|||||+..++.|++||+|.+.++..
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 355899999999999999999999999999998754
No 32
>PHA02337 putative high light inducible protein
Probab=97.32 E-value=0.00018 Score=48.21 Aligned_cols=28 Identities=21% Similarity=0.094 Sum_probs=24.5
Q ss_pred HHHHHhhchhHHHHhhhhhhhhhhhccC
Q 021923 74 FNFEILHARWAMLGALGALVPEVLDMVG 101 (305)
Q Consensus 74 ReAELKHGRvAMLAvvG~lv~E~l~~~G 101 (305)
.+||..|||+||++++-.++.|+++.-+
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 3699999999999999999999976543
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.68 E-value=0.0047 Score=57.48 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=26.7
Q ss_pred HHHHHhhchhHHHHhhhhhhhhhhhccCcc
Q 021923 74 FNFEILHARWAMLGALGALVPEVLDMVGAF 103 (305)
Q Consensus 74 ReAELKHGRvAMLAvvG~lv~E~l~~~G~~ 103 (305)
.++|+.|||+||+|++-.++.|.+++-|.+
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 489999999999999999999998876643
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=92.91 E-value=0.062 Score=48.22 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhchhHHHHhhhhhhhhhhh-ccCccc
Q 021923 69 AFQKYFNFEILHARWAMLGALGALVPEVLD-MVGAFH 104 (305)
Q Consensus 69 ~l~~~ReAELKHGRvAMLAvvG~lv~E~l~-~~G~~~ 104 (305)
..+.-+..|+.+||+|||+++-.++.|+++ .-|.++
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~ 167 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLE 167 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 344555779999999999999999999988 666543
No 35
>PLN02449 ferrochelatase
Probab=51.79 E-value=10 Score=39.15 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhcCCCchh
Q 021923 208 LAMVAWLGFYIQAAFTGKGPVQ 229 (305)
Q Consensus 208 LAMlA~~G~vaQe~vTG~gPl~ 229 (305)
+||+||+.+++-|+++|+||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999973
No 36
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=23.90 E-value=45 Score=21.71 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=7.2
Q ss_pred eEEeccceeEee
Q 021923 287 KIIFGNNCFIYS 298 (305)
Q Consensus 287 ~~~~~~~~~~~~ 298 (305)
++..|+||+|..
T Consensus 1 pv~IG~~~~ig~ 12 (34)
T PF14602_consen 1 PVTIGDNCFIGA 12 (34)
T ss_dssp TEEE-TTEEE-T
T ss_pred CeEECCCEEECc
Confidence 367788888864
No 37
>PF10870 DUF2729: Protein of unknown function (DUF2729); InterPro: IPR022621 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf72; it is a family of uncharacterised viral proteins. This Alphabaculovirus family of proteins has no known function.
Probab=22.95 E-value=53 Score=23.91 Aligned_cols=12 Identities=58% Similarity=1.096 Sum_probs=6.4
Q ss_pred Eeccce-eEeeee
Q 021923 289 IFGNNC-FIYSTV 300 (305)
Q Consensus 289 ~~~~~~-~~~~~~ 300 (305)
-+-||| |||-.|
T Consensus 39 q~NNNCNFiYInV 51 (53)
T PF10870_consen 39 QINNNCNFIYINV 51 (53)
T ss_pred EEcCCccEEEEEE
Confidence 345666 566443
Done!