Query 021923
Match_columns 305
No_of_seqs 189 out of 1159
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2.3E-64 7.8E-69 462.0 19.7 216 23-248 11-226 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.1E-60 3.9E-65 438.2 9.9 195 27-247 5-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 4.3E-57 1.5E-61 420.9 0.4 202 26-249 57-268 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 1.6E-56 5.6E-61 418.3 3.6 209 27-249 50-275 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 6.3E-56 2.2E-60 410.0 -0.0 196 26-248 45-249 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.4E-52 4.9E-57 385.3 5.5 193 32-248 44-238 (241)
7 2bhw_A Chlorophyll A-B binding 99.6 3E-16 1E-20 143.6 8.5 112 175-286 38-199 (232)
8 2wsc_2 LHCA2, type II chloroph 99.6 2.6E-17 8.8E-22 153.4 -0.2 111 175-285 79-239 (269)
9 3pl9_A Chlorophyll A-B binding 99.6 7E-17 2.4E-21 148.2 0.7 112 175-286 26-216 (243)
10 2wsc_1 AT3G54890, LHCA1; photo 99.6 3.8E-16 1.3E-20 143.5 1.7 111 175-285 60-209 (241)
11 2wsc_4 Chlorophyll A-B binding 99.6 1.2E-16 4.2E-21 147.6 -1.5 53 176-228 69-121 (251)
12 2wsc_3 LHCA3, type II chloroph 99.5 9.4E-16 3.2E-20 143.3 -3.5 52 176-228 72-129 (276)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.3e-64 Score=461.99 Aligned_cols=216 Identities=51% Similarity=0.908 Sum_probs=190.5
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCc
Q 021923 23 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 102 (305)
Q Consensus 23 ~~~~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~ 102 (305)
.+.|.||+++|++|+++++.+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|
T Consensus 11 ~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G- 89 (232)
T 2bhw_A 11 SSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG- 89 (232)
T ss_dssp CTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred ccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC-
Confidence 3468899999999999765689999999999999999999999999999999999999999999999999999998877
Q ss_pred cccCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCC
Q 021923 103 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 182 (305)
Q Consensus 103 ~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~g 182 (305)
++|+++.||++|...+++..++|+++|.+. ..+.+.+++++|+++++.+|.+|+.+. +.+. ..|..||||+
T Consensus 90 ~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~--~~q~i~~~~~~q~~~~g~~E~~r~~~g----~~g~--~~d~~~Pg~~- 160 (232)
T 2bhw_A 90 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLV--HAQSILAIWATQVILMGAVEGYRIAGG----PLGE--VVDPLYPGGS- 160 (232)
T ss_dssp CCCSCCSGGGSGGGGGSTTCEEGGGCTTSE--EECCHHHHHHHHHHHHHHHHHHHHHEE----TTEE--CSSSSCCCTT-
T ss_pred cCCcccccccccchhccccchhcccCcchh--hHHHHHHHHHHHHHHHHHHHHHhhccC----cccc--cccccCCCcc-
Confidence 678889999998766666667788887633 346677888999999888999887651 1111 2356799997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhcc
Q 021923 183 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248 (305)
Q Consensus 183 FDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 248 (305)
||||++.+|+++++++|.+|||||||||+||+|+++|+.+||++|++||.+|++||+|||+++++.
T Consensus 161 fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~ 226 (232)
T 2bhw_A 161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT 226 (232)
T ss_dssp SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTT
T ss_pred cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.1e-60 Score=438.25 Aligned_cols=195 Identities=42% Similarity=0.709 Sum_probs=131.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChH--------------------------------------
Q 021923 27 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM-------------------------------------- 68 (305)
Q Consensus 27 ~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~-------------------------------------- 68 (305)
.|++++|++|+|+ .++|+|||||+|||+|||||||+++||
T Consensus 5 ~~~~~~r~~w~pg--~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYPG--AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC--CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 6788899999996 679999999999999999999999886
Q ss_pred -----HHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccccCcchhhhhcccccccccccccCCCcccccchhhHHHHH
Q 021923 69 -----AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 143 (305)
Q Consensus 69 -----~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~ 143 (305)
+++||||+|||||||||||++|++++|+++ | ..||++|...+++ .++|++.|. ...+..++
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g------~~W~~aG~~~~~~-g~~y~g~p~-----~~~i~~l~ 148 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--G------ITWQDAGKVELIE-GSSYLGQPL-----PFSMTTLI 148 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------CCTTTHHHHHHHS-CEEETTEEE-----CCCHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--C------ccccccccccccc-ccccccCcc-----chhhHHHH
Confidence 378999999999999999999999999974 2 2588888654432 356766543 12456778
Q ss_pred HHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhc
Q 021923 144 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 223 (305)
Q Consensus 144 ~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vT 223 (305)
++|+++|+++|.+|+.+. + +.+..||||+ |||||+++|+++++++|.+|||||||||+||+|+++|+++|
T Consensus 149 ~~qv~lmG~~E~~R~~~~---~------~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vt 218 (243)
T 3pl9_A 149 WIEVLVIGYIEFQRNAEL---D------TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVT 218 (243)
T ss_dssp HHHHHHHHHHHHHHHSCC---C------TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc---C------CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 899999999999998753 1 2345699997 99999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhcCccccchhhhc
Q 021923 224 GKGPVQNLLDHISDPLHNNLLSMV 247 (305)
Q Consensus 224 G~gPl~nL~~hladP~~~n~~~~~ 247 (305)
|+||++||.+|++||+|||+++++
T Consensus 219 G~Gpl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 219 GKGPLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp SSCHHHHHHHHHHCSGGGSTTTTT
T ss_pred CCChHHHHHHHhcCcchhhhhhhc
Confidence 999999999999999999999875
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=4.3e-57 Score=420.94 Aligned_cols=202 Identities=37% Similarity=0.719 Sum_probs=134.1
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCcccc
Q 021923 26 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 105 (305)
Q Consensus 26 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~f 105 (305)
..||+++|++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..|.+
T Consensus 57 ~~~~~~~r~~wlpg--~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~-- 132 (269)
T 2wsc_2 57 CTVAEPDRPLWFPG--STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL-- 132 (269)
T ss_dssp ---------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS--
T ss_pred ecccCCCcccccCC--CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc--
Confidence 35899999999986 57999999999999999999999999999999999999999999999999999999887754
Q ss_pred CcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC-------c-cCCCCCCC
Q 021923 106 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-------I-FLPGDINY 177 (305)
Q Consensus 106 ~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g-------~-~~pGD~~~ 177 (305)
..|.||++|.. +|+..+. .++++|+++++++|.+|++++......+ . ...+|..|
T Consensus 133 ~~p~w~~aG~~-------~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~ 195 (269)
T 2wsc_2 133 NTPSWYTAGEQ-------EYFTDTT----------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 195 (269)
T ss_dssp SCCCCCSTTSS-------SSCCCTT----------SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSC
T ss_pred cCccccccchh-------hhhcchH----------HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCC
Confidence 35679887642 2322221 2457788888888999987653321111 0 11346689
Q ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhh-hhhcCccccchhhhccc
Q 021923 178 PGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL-DHISDPLHNNLLSMVKS 249 (305)
Q Consensus 178 PGg~gFDPLgl~k-dpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~-~hladP~~~n~~~~~~~ 249 (305)
|||++||||||.+ |+++++++|.+|||||||||+||+|+++|+++||+||++||. +|++|| |||+++++..
T Consensus 196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 9999999999985 677889999999999999999999999999999999999999 999999 9999998753
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.6e-56 Score=418.34 Aligned_cols=209 Identities=42% Similarity=0.732 Sum_probs=114.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHH------HHHHHHHHhhchhHHHHhhhhhhhhhhhcc
Q 021923 27 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAF------QKYFNFEILHARWAMLGALGALVPEVLDMV 100 (305)
Q Consensus 27 ~~~~~~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l------~~~ReAELKHGRvAMLAvvG~lv~E~l~~~ 100 (305)
++|+++|++|+|. .+.|+||||++|||+||||||| +|++++ +|||++|||||||||||++|++++|+++..
T Consensus 50 ~~~g~~R~~wlP~--~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~ 126 (276)
T 2wsc_3 50 VKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSC
T ss_pred cccCCCccccCCC--CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccc
Confidence 4599999999974 5799999999999999999999 578888 999999999999999999999999999877
Q ss_pred CccccCcc-hhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCc----------
Q 021923 101 GAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI---------- 169 (305)
Q Consensus 101 G~~~f~~p-~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~---------- 169 (305)
|.+....+ .|++.|.....+ ..+|++.+. .+.++|+++++.+|.+|++++......+.
T Consensus 127 g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~ 195 (276)
T 2wsc_3 127 GLIPQETALPWFRTGFIPPAG-TYNYWADSY----------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGL 195 (276)
T ss_dssp CCCCCSSCCSSSSCCCC------CCCSCCCC----------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCC
T ss_pred ccccccCcchhhhhhcccchh-HHHHhccch----------HHHHHHHHHHHHHHHhhhcccccCCcccccccccccccc
Confidence 75422234 488866533222 234544432 23567888888889999876532111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhccc
Q 021923 170 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 249 (305)
Q Consensus 170 ~~pGD~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 249 (305)
...+|..||||++||||||.+|+++++++|.+|||||||||+||+|+++|+++||++|++||.+|++||+|||+++++.+
T Consensus 196 ~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 196 GGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp CCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 11346689999999999999988889999999999999999999999999999999999999999999999999998753
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=6.3e-56 Score=409.99 Aligned_cols=196 Identities=41% Similarity=0.754 Sum_probs=127.0
Q ss_pred CcccCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccc
Q 021923 26 SLWYGE-ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 104 (305)
Q Consensus 26 ~~~~~~-~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~ 104 (305)
..||++ +|++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..|.+
T Consensus 45 ~~~~~~~~r~~~~pg--~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~- 121 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG--LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII- 121 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS-
T ss_pred ccccCcchhhhccCC--CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc-
Confidence 458999 79999986 57999999999999999999999999999999999999999999999999999998887754
Q ss_pred cCcchhhhhcccccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC-------cc-CCCCCC
Q 021923 105 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-------IF-LPGDIN 176 (305)
Q Consensus 105 f~~p~w~~aG~~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g-------~~-~pGD~~ 176 (305)
..|.||++|.. +|++.+. .++++|+++++.+|.+|+.++......+ .. ..+|..
T Consensus 122 -~~p~w~~aG~~-------~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~ 183 (251)
T 2wsc_4 122 -NVPKWYAAGKE-------EYFASSS----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183 (251)
T ss_dssp -CCCCCSCCCSS-------SCSSCSS----------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHH
T ss_pred -CCccccccchH-------hhhccch----------HHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccc
Confidence 34679886643 2333321 1245687778888998876543211111 01 112457
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhhhhhhhcCccccchhhhcc
Q 021923 177 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 248 (305)
Q Consensus 177 ~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 248 (305)
||||+ ||||++.+ ++++|+|||||||| |+||+||++|+++||++|++||.+|++||+|||+++++.
T Consensus 184 yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 184 YPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp SSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred CCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 99997 99999976 56799999999999 999999999999999999999999999999999999875
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1.4e-52 Score=385.35 Aligned_cols=193 Identities=43% Similarity=0.739 Sum_probs=135.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHHHHHHhhchhHHHHhhhhhhhhhhhccCccccCcchhh
Q 021923 32 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 111 (305)
Q Consensus 32 ~r~~~~~~~~~~~P~~LdGs~pGd~gFDPLGLs~d~~~l~~~ReAELKHGRvAMLAvvG~lv~E~l~~~G~~~f~~p~w~ 111 (305)
.|+.|+|. .++|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++. +.|+
T Consensus 44 m~~~w~P~--~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~~~~ 113 (241)
T 2wsc_1 44 MAAHWMPG--EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------GNWV 113 (241)
T ss_dssp -------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C---
T ss_pred cccccCCC--CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------Cccc
Confidence 36679986 4699999999999999999999999999999999999999999999999999998643 2355
Q ss_pred hhcc-cccccccccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCC
Q 021923 112 RVGY-SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSK 190 (305)
Q Consensus 112 ~aG~-~~~~~~~l~~~~~p~~~~a~~~~v~~i~~~qi~l~~~~E~~r~~~~~~~~~~g~~~pGD~~~PGg~gFDPLgl~k 190 (305)
+++. ..+++...+|++.|.. ++.++.++++|+++++.+|.+|+.+. .+.+..|||| .|||||+.+
T Consensus 114 ~a~~~~~~~~g~a~~~~~~~~----~~~~~~i~~iq~l~ig~~E~~r~~~~---------~~~~~~yPgg-~fDPlgl~~ 179 (241)
T 2wsc_1 114 KAQEWAALPGGQATYLGNPVP----WGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYSK 179 (241)
T ss_dssp --CCCCSCSSCSSCCSSSCSS----SSSHHHHHHHHHHHTHHHHHHHTSCC---------SSCCSSSCSC-CSCSSSCSC
T ss_pred cccchhccCCcchhhhcCcch----HHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCCCCCCC-ccccccccc
Confidence 4432 1223333345444421 23456677889988888899886431 1234579999 699999999
Q ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hhcCCCchhhhhhhhcCccccchhhhcc
Q 021923 191 DPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMVK 248 (305)
Q Consensus 191 dpe~~~~~k~kEIKNGRLAMlA~~G~vaQe-~vTG~gPl~nL~~hladP~~~n~~~~~~ 248 (305)
|+++++++|.+|||||||||+|++|+++|+ .+||+||++||.+|++||+|||++++..
T Consensus 180 ~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 180 DPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp SSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred chhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 998899999999999999999999999999 6899999999999999999999998764
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.64 E-value=3e-16 Score=143.57 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCC-----chh-----hhh-----hhhcCcc
Q 021923 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG-----PVQ-----NLL-----DHISDPL 239 (305)
Q Consensus 175 ~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~g-----Pl~-----nL~-----~hladP~ 239 (305)
..+|||++||||||++|++.++++|..||||||+||+|++|+++||+++..| ++- +.. +.+.+|.
T Consensus 38 G~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~ 117 (232)
T 2bhw_A 38 GEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 117 (232)
T ss_dssp SCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTT
T ss_pred CcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcc
Confidence 3579999999999999999999999999999999999999999999976432 110 000 1122332
Q ss_pred ccc---hhh-----------------------------hcccCCCC---CCChhhhhhcccccccchhhhHHhhhhcccc
Q 021923 240 HNN---LLS-----------------------------MVKSMDDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTITP 284 (305)
Q Consensus 240 ~~n---~~~-----------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (305)
... +.+ .....+|+ +..+.+..+.+..|++|||.+|++.++++..
T Consensus 118 ~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~ 197 (232)
T 2bhw_A 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 197 (232)
T ss_dssp SEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 110 000 00001333 3356667778889999999999999998876
Q ss_pred ce
Q 021923 285 KK 286 (305)
Q Consensus 285 ~~ 286 (305)
+.
T Consensus 198 ~~ 199 (232)
T 2bhw_A 198 AI 199 (232)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 8
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.62 E-value=2.6e-17 Score=153.37 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=66.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchhh--h-----hhhhcCccccch----
Q 021923 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN--L-----LDHISDPLHNNL---- 243 (305)
Q Consensus 175 ~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~n--L-----~~hladP~~~n~---- 243 (305)
..+|||++||||||++|+++++++|.+||||||+||+|++|+++||++++.|.+.. + .+.+++|...-+
T Consensus 79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~ 158 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELV 158 (269)
T ss_dssp ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTT
T ss_pred CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999997654411 1 112223211000
Q ss_pred ------------------------hh----------hc-ccCCCC----CCChhhhhhcccccccchhhhHHhhhhcccc
Q 021923 244 ------------------------LS----------MV-KSMDDP----SGCPLERMRRCQFRCNQTRRSLVLSMLTITP 284 (305)
Q Consensus 244 ------------------------~~----------~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (305)
+. +. ...+|| +..+++..+.+..|++|||.+|++.++++.+
T Consensus 159 liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~ 238 (269)
T 2wsc_2 159 FIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238 (269)
T ss_dssp HHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHH
T ss_pred HHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 00 00 011333 2345556777889999999999999999877
Q ss_pred c
Q 021923 285 K 285 (305)
Q Consensus 285 ~ 285 (305)
+
T Consensus 239 ~ 239 (269)
T 2wsc_2 239 H 239 (269)
T ss_dssp H
T ss_pred H
Confidence 6
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.60 E-value=7e-17 Score=148.24 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCCCCCHHH-------------------------------------------HHHHHHHHHhhhHHHHH
Q 021923 175 INYPGGALFDPLNLSKDPVA-------------------------------------------FEELKVKEIKNGRLAMV 211 (305)
Q Consensus 175 ~~~PGg~gFDPLgl~kdpe~-------------------------------------------~~~~k~kEIKNGRLAMl 211 (305)
..+|||+|||||||+++||. ++++|..||||||+||+
T Consensus 26 GslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAML 105 (243)
T 3pl9_A 26 GSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAML 105 (243)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHHH
Confidence 35899999999999998862 68899999999999999
Q ss_pred HHHHHHHhhhhcCCCchh----hh---hhhhcCccccchhh--------------------------hcccCCCC---CC
Q 021923 212 AWLGFYIQAAFTGKGPVQ----NL---LDHISDPLHNNLLS--------------------------MVKSMDDP---SG 255 (305)
Q Consensus 212 A~~G~vaQe~vTG~gPl~----nL---~~hladP~~~n~~~--------------------------~~~~~~~~---~~ 255 (305)
|++|++++|+++|-.=.+ .+ .+.+.+|...++.+ +....+|+ +.
T Consensus 106 AvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~~~~~~~PG~~FDPLGl~~ 185 (243)
T 3pl9_A 106 ATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLAS 185 (243)
T ss_dssp HHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTCCCGGGCTTCTTC
T ss_pred HHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccCCccccCCCcchhhccccc
Confidence 999999999997631000 00 01222332211110 00111344 33
Q ss_pred ChhhhhhcccccccchhhhHHhhhhccccce
Q 021923 256 CPLERMRRCQFRCNQTRRSLVLSMLTITPKK 286 (305)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
.+.+..+.+..|+||+|.+|++.++++..+.
T Consensus 186 d~e~~~~~r~~ElknGRlAMla~~g~~~q~~ 216 (243)
T 3pl9_A 186 DPEKKPILQLAEIKHARLAMVGFLGFAVQAA 216 (243)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 5667778888999999999999999988764
No 10
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.57 E-value=3.8e-16 Score=143.53 Aligned_cols=111 Identities=24% Similarity=0.228 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCchh-----hh----hhhhcCcccc-chh
Q 021923 175 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ-----NL----LDHISDPLHN-NLL 244 (305)
Q Consensus 175 ~~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl~-----nL----~~hladP~~~-n~~ 244 (305)
...|||++||||||++|+++++++|.+||||||+||+|++|+++|++++..+-.+ .+ .+.+.+|... ++.
T Consensus 60 G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~ 139 (241)
T 2wsc_1 60 GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139 (241)
T ss_dssp -CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHH
T ss_pred CCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHH
Confidence 3579999999999999999999999999999999999999999999975311000 00 0111222211 000
Q ss_pred h--------------------------hcccCCCC---CCChhhhhhcccccccchhhhHHhhhhccccc
Q 021923 245 S--------------------------MVKSMDDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTITPK 285 (305)
Q Consensus 245 ~--------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (305)
+ +....+|| +..+.+..+.+-.|+||||.+|++..+++..+
T Consensus 140 ~i~~iq~l~ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~ 209 (241)
T 2wsc_1 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQ 209 (241)
T ss_dssp HHHHHHHHHTHHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhh
Confidence 0 00011333 23445566667789999999999999999887
No 11
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.57 E-value=1.2e-16 Score=147.56 Aligned_cols=53 Identities=36% Similarity=0.612 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCch
Q 021923 176 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 228 (305)
Q Consensus 176 ~~PGg~gFDPLgl~kdpe~~~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl 228 (305)
.+|||++||||||++|+++++++|.+||||||+||+|++|+++||++++.+++
T Consensus 69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999999999999999999999999999998766
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.48 E-value=9.4e-16 Score=143.33 Aligned_cols=52 Identities=37% Similarity=0.512 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCCCCCHHHH------HHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCch
Q 021923 176 NYPGGALFDPLNLSKDPVAF------EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 228 (305)
Q Consensus 176 ~~PGg~gFDPLgl~kdpe~~------~~~k~kEIKNGRLAMlA~~G~vaQe~vTG~gPl 228 (305)
..|||++|||||| +|++++ +.++..||||||+||||++|++++|++++.+.+
T Consensus 72 ~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 72 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp --------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred cCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 4799999999999 678888 899999999999999999999999999987643
Done!