BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021924
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 123/291 (42%), Gaps = 28/291 (9%)
Query: 14 AGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGI-------RYKNGLHCTARILRTEGVRG 66
AG A +A +I P DT KV+LQ E G+ +Y+ L ++RTEG R
Sbjct: 8 AGTAACIADLIT-FPLDTAKVRLQIQG-ESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 67 LYRGATPSFLGMAFESSLLFGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLC 126
LY G +S+ G+Y KQ G + G ++ S G++ V
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTT--GALAVAVAQ 123
Query: 127 PSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIGNAV 186
P+++VK R Q Q + RY S ++ ++EG+ +++G S R AI N
Sbjct: 124 PTDVVKVRFQAQ---ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 187 FFSVYEHVRYYMHLKLKAASSDHSNLIDMXXXXXXXXXXXXAFWSAVL--PLDVAKT-II 243
Y+ ++ + LKA NL+ F + V+ P+DV KT +
Sbjct: 181 ELVTYDLIKDTL---LKA------NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM 231
Query: 244 QTAPDKNASTNPFQILNSIYRRAGLKGCYTGLGPTIMRAFPANATAIVTWE 294
+A + S + ++ R+ G + Y G P+ +R N VT+E
Sbjct: 232 NSALGQYHSAGHCAL--TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYE 280
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 13 VAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGAT 72
+AG G V V P D VKV+ Q G RY++ + I R EG+RGL++G +
Sbjct: 109 LAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168
Query: 73 PSFLGMAFESSLLFGIYSQTKQ-LLQGGVQSGGPQPNVIIPSAAFGGSIISFVLC-PSEL 130
P+ A + Y K LL+ + + + ++AFG + V+ P ++
Sbjct: 169 PNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHF---TSAFGAGFCTTVIASPVDV 225
Query: 131 VKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIGNAVFFSV 190
VK R +Y S CAL +++EG A ++G +FLR N V F
Sbjct: 226 VKTRYMNSALG-------QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278
Query: 191 YEHVR 195
YE ++
Sbjct: 279 YEQLK 283
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 18 AGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLG 77
AG T ++ P D VK + N+ + +Y + HC +LR EG R Y+G PSFL
Sbjct: 212 AGFCTTVIASPVDVVKTRYM--NSALG--QYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
Query: 78 MAFESSLLFGIYSQTKQLLQGGVQS 102
+ + ++F Y Q K+ L QS
Sbjct: 268 LGSWNVVMFVTYEQLKRALMAAYQS 292
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 14 AGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGL-HCTARILRTEGVRGLYRGAT 72
+G AG ++ +P D + +L + R GL +C +I +++G+RGLY+G
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 73 PSFLGMAFESSLLFGIYSQTKQLLQGGVQSGGPQP-NV-IIPSAAFGGSIIS---FVLCP 127
S G+ + FG+Y K +L P P NV II S ++ + V P
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGML--------PDPKNVHIIVSWMIAQTVTAVAGLVSYP 229
Query: 128 SELVKCRMQVQ----GTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIG 183
+ V+ RM +Q G D + YT +DC + K EG A F+G + LR +G
Sbjct: 230 FDTVRRRMMMQSGRKGAD------IMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMG 282
Query: 184 NAVFFSVYEHVRYYM 198
A +Y+ ++ ++
Sbjct: 283 GAFVLVLYDEIKKFV 297
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 76/207 (36%), Gaps = 50/207 (24%)
Query: 125 LCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIGN 184
+ P E VK +QVQ + +Y +DC +R K++G ++ +RG +R
Sbjct: 25 VAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84
Query: 185 AVFFS------------VYEHVRYYMHLKLKAASSDHSNLIDMXXXXXXXXXXXXAFWSA 232
A+ F+ V H +++ + AS + +
Sbjct: 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF--------------- 129
Query: 233 VLPLDVAKTIIQTAPDKNASTNPF----QILNSIYRRAGLKGCYTGL-----GPTIMRAF 283
V PLD A+T + K A+ F + I++ GL+G Y G G I RA
Sbjct: 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189
Query: 284 --------------PANATAIVTWELA 296
P N IV+W +A
Sbjct: 190 YFGVYDTAKGMLPDPKNVHIIVSWMIA 216
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 10 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVH---GIRYKNGLHCTARILRTEGVRG 66
K+++AG +A + P + VK+ LQ + +YK + C RI + +G
Sbjct: 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 68
Query: 67 LYRGATPSFLGMAFESSLLFGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLC 126
+RG + + +L F + KQ+ GGV + A GG+ + LC
Sbjct: 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128
Query: 127 ---PSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIG 183
P + + R+ + +T +C + K +G+ +++G + + I
Sbjct: 129 FVYPLDFARTRLAADVGKGAAQRE--FTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 184 NAVFFSVYEHVR 195
A +F VY+ +
Sbjct: 187 RAAYFGVYDTAK 198
>pdb|1CPT|A Chain A, Crystal Structure And Refinement Of Cytochrome P450-Terp
At 2.3 Angstroms Resolution
Length = 428
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 113 SAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRT 160
S++ GG+II P +L + LV ++VR+T+P+ +RT
Sbjct: 273 SSSSGGAIIGLSRNPEQLALAKSDPALIPRLVDEAVRWTAPVKSFMRT 320
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 116 FGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMA 168
FGG ++ +L S + ++ GT L+ +S RYTSP+ V+ EGV++
Sbjct: 78 FGGRVVHGMLTTSLVSAAVARLPGTVVLLEQSFRYTSPVRIG-DVVRVEGVVS 129
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 5 WGSGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGV 64
+G+G Y+ L+ GV VI HP D + G +K GL T +++ +
Sbjct: 121 YGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPV---GNYFKGGLAPTNFLIQDDYD 177
Query: 65 RGLYRGATPSFLGMAFESSLLFGIYSQTKQL 95
R G + +G + +SLL G + +Q
Sbjct: 178 RAAPHGTGAAKVGGNYAASLLPGKVAHERQF 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,594,558
Number of Sequences: 62578
Number of extensions: 326560
Number of successful extensions: 668
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 9
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)