Query 021924
Match_columns 305
No_of_seqs 146 out of 1703
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 11:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 7.9E-58 2.7E-62 389.6 24.3 280 10-302 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.7E-57 9.2E-62 385.5 25.5 286 3-300 2-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 5.9E-37 2E-41 260.3 18.4 194 106-302 6-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 9.2E-37 3.2E-41 259.6 14.3 192 6-205 102-293 (303)
5 4b19_A PEPA1; toxin, toxin apo 25.2 11 0.00039 18.9 -0.4 23 216-238 4-26 (30)
6 2acm_A Mucin-1; auto-catalytic 22.3 15 0.00051 21.7 -0.4 20 49-68 40-59 (66)
7 3tgu_G UQCRQ, mitochondrial ub 18.2 1.1E+02 0.0037 19.5 3.0 38 165-202 33-70 (81)
8 1pp9_G Ubiquinol-cytochrome C 12.8 1.8E+02 0.0061 18.5 2.9 38 165-202 33-70 (81)
9 3fbl_A Putative uncharacterize 11.7 2.6E+02 0.009 16.5 3.2 19 154-172 5-23 (82)
10 3cx5_H Cytochrome B-C1 complex 11.5 1.5E+02 0.0052 19.4 2.3 35 266-300 42-76 (93)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.9e-58 Score=389.61 Aligned_cols=280 Identities=23% Similarity=0.304 Sum_probs=249.9
Q ss_pred hHHHHHHHHHHHHHHhcCchhHHHHHHhcCCCCC------CCcccCchhHHHHHHHHhhhhhhcccCchhHHHHHHHHHH
Q 021924 10 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEV------HGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESS 83 (305)
Q Consensus 10 ~~~~~g~~a~~~~~~~~~Pl~~ik~~~q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 83 (305)
.++++|++|++++.++++|+|++|+|+|++.... ...+|+++.+++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999987532 1356899999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHhccCcCCCCCCchhhHhHHhHHHHHHHhhhcchHHHHHHHHhcCCCCCCCCcccCCCHHHHHHHHHHh
Q 021924 84 LLFGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQ 163 (305)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~~~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~ 163 (305)
++|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|++|+|+|.+.... ...+|.+.++++++++++
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~---~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG---GGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC---CSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC---CCCCCCCHHHHHHHHHHh
Confidence 999999999998875422 356677899999999999999999999999999986431 345789999999999999
Q ss_pred hCcccccchhhhhHhhhhhchhHHHHHHHHHHHHHHhhhhccCCCCCchhhhHHHHHHHHHHhhhHHhhcchhHHHHHHH
Q 021924 164 EGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAFWSAVLPLDVAKTII 243 (305)
Q Consensus 164 ~G~~glyrG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~t~Pldvi~~r~ 243 (305)
||++|||||+.|++++++|+++++|.+||.+++.+.+... . ..+....+++|++|+++++++++|+||||+||
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~----~---~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrl 230 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL----M---TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS----C---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC----C---CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999987754321 1 12345679999999999999999999999999
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHhCccccccchhHHHHhhhhhhhHHHHHHHHHHHhhCC
Q 021924 244 QTAPDKNASTNPFQILNSIYRRAGLKGCYTGLGPTIMRAFPANATAIVTWELAGKLLGI 302 (305)
Q Consensus 244 q~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 302 (305)
|.+.. ..|.++++|+++|+++||++|||||+.+++++.+|.+++.|.+||.+|+.+..
T Consensus 231 q~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 231 MNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp TTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred Hhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99864 46899999999999999999999999999999999999999999999998753
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.7e-57 Score=385.55 Aligned_cols=286 Identities=17% Similarity=0.272 Sum_probs=242.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHhcCchhHHHHHHhcCCCCC---CCcccCchhHHHHHHHHhhhhhhcccCchhHHHHHH
Q 021924 3 ESWGSGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEV---HGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMA 79 (305)
Q Consensus 3 ~~~~~~~~~~~~g~~a~~~~~~~~~Pl~~ik~~~q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~ 79 (305)
+...+.+.++++|+++++++.++++|+|++|+|+|++.... ....|+++.+++++++++||++|||||+.+++++.+
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 81 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHH
Confidence 34456788999999999999999999999999999986421 234689999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHhccCcCCCC---CCchhhHhHHhHHHHHHHhhhcchHHHHHHHHhcCCCCCCCCcccCCCHHHH
Q 021924 80 FESSLLFGIYSQTKQLLQGGVQSGG---PQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDC 156 (305)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~a~~~~~~i~~P~~~ik~~~q~~~~~~~~~~~~~~~~~~~~ 156 (305)
+..+++|.+||.+++.+....+... ......+++|++||+++.++++|+|++|+|+|.+.... +...+|.+.+++
T Consensus 82 ~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--~~~~~~~~~~~~ 159 (297)
T 1okc_A 82 PTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG--AAQREFTGLGNC 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--TTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC--CcCcCCCCHHHH
Confidence 9999999999999995433211111 12356788999999999999999999999999985421 134578999999
Q ss_pred HHHHHHhhCcccccchhhhhHhhhhhchhHHHHHHHHHHHHHHhhhhccCCCCCchhhhHHHHHHHHHHhhhHHhhcchh
Q 021924 157 ALRTVKQEGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAFWSAVLPL 236 (305)
Q Consensus 157 ~~~i~~~~G~~glyrG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~t~Pl 236 (305)
+++++++||++|||||+.|++++++|+++++|.+||.+++.+.+.. + .+....+++|++++++++++++|+
T Consensus 160 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~----~~~~~~~~~g~~ag~~a~~~t~P~ 230 (297)
T 1okc_A 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----N----VHIIVSWMIAQTVTAVAGLVSYPF 230 (297)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----C----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----C----ccHHHHHHHHHHHHHHHHHhcChH
Confidence 9999999999999999999999999999999999999998653211 1 234567899999999999999999
Q ss_pred HHHHHHHhhCCCC----CCCCCHHHHHHHHHHHhCccccccchhHHHHhhhhhhhHHHHHHHHHHHhh
Q 021924 237 DVAKTIIQTAPDK----NASTNPFQILNSIYRRAGLKGCYTGLGPTIMRAFPANATAIVTWELAGKLL 300 (305)
Q Consensus 237 dvi~~r~q~~~~~----~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 300 (305)
||||+|||.+... ..|.++++|+++|+++||++|||||+.+++++. +.+++.|.+||.+|+++
T Consensus 231 dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 231 DTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999987542 368999999999999999999999999999996 57899999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.9e-37 Score=260.26 Aligned_cols=194 Identities=20% Similarity=0.285 Sum_probs=166.6
Q ss_pred CchhhHhHHhHHHHHHHhhhcchHHHHHHHHhcCCCCCCCCcccCCCHHHHHHHHHHhhCcccccchhhhhHhhhhhchh
Q 021924 106 QPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIGNA 185 (305)
Q Consensus 106 ~~~~~~~~g~~a~~~~~~i~~P~~~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~ 185 (305)
+....+++|++||+++.++++|+|++|+|+|.+..........+|.+.++++++++++||++|||||+.+++++++|.++
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 34567899999999999999999999999999864322123457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCchhhhHHHHHHHHHHhhhHHhhcchhHHHHHHHhhCCC----CCCCCCHHHHHHH
Q 021924 186 VFFSVYEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAFWSAVLPLDVAKTIIQTAPD----KNASTNPFQILNS 261 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~t~Pldvi~~r~q~~~~----~~~~~~~~~~~~~ 261 (305)
++|.+||.+++.+.+... .+.+........+++|++|+++++++++|+|+||+|+|.+.. ...|.++++|+++
T Consensus 86 ~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~ 162 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162 (297)
T ss_dssp HHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHH
Confidence 999999999986543211 111222345678999999999999999999999999999853 2468899999999
Q ss_pred HHHHhCccccccchhHHHHhhhhhhhHHHHHHHHHHHhhCC
Q 021924 262 IYRRAGLKGCYTGLGPTIMRAFPANATAIVTWELAGKLLGI 302 (305)
Q Consensus 262 i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 302 (305)
|+++||++|||||+.+++++.+|..++.|.+||.+|+.+..
T Consensus 163 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998753
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.2e-37 Score=259.63 Aligned_cols=192 Identities=27% Similarity=0.371 Sum_probs=170.8
Q ss_pred cchhhHHHHHHHHHHHHHHhcCchhHHHHHHhcCCCCCCCcccCchhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHHH
Q 021924 6 GSGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLL 85 (305)
Q Consensus 6 ~~~~~~~~~g~~a~~~~~~~~~Pl~~ik~~~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 85 (305)
.+....+++|+++++++.++++|+|++|+|+|++........|++..+++++++++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999987543445789999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHhccCcCCCCCCchhhHhHHhHHHHHHHhhhcchHHHHHHHHhcCCCCCCCCcccCCCHHHHHHHHHHhhC
Q 021924 86 FGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEG 165 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~~~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G 165 (305)
|.+||.+++.+.+... ...+....+++|++||+++.++++|+|++|+|+|.+.. ..|.+.++++++++++||
T Consensus 182 f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~~i~~~eG 253 (303)
T 2lck_A 182 LVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCALTMLRKEG 253 (303)
T ss_dssp HHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHHHHHHHcC
Confidence 9999999998765422 23455677899999999999999999999999998753 258999999999999999
Q ss_pred cccccchhhhhHhhhhhchhHHHHHHHHHHHHHHhhhhcc
Q 021924 166 VMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKAA 205 (305)
Q Consensus 166 ~~glyrG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (305)
++|||||+.|+++|.+|..++.|.+||.+++.+.+....+
T Consensus 254 ~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~~~ 293 (303)
T 2lck_A 254 PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSR 293 (303)
T ss_dssp THHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred hHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999998776554433
No 5
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=25.22 E-value=11 Score=18.86 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhHHhhcchhHH
Q 021924 216 GIGIVSGGLGGVAFWSAVLPLDV 238 (305)
Q Consensus 216 ~~~~~~~~la~~~~~~~t~Pldv 238 (305)
+..+++-.++|++.++++|-|+.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 34456677788888888887763
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.27 E-value=15 Score=21.74 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHhhhhhhcc
Q 021924 49 KNGLHCTARILRTEGVRGLY 68 (305)
Q Consensus 49 ~~~~~~~~~i~~~~G~~gly 68 (305)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788889999999998876
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=18.20 E-value=1.1e+02 Score=19.51 Aligned_cols=38 Identities=11% Similarity=-0.003 Sum_probs=26.8
Q ss_pred CcccccchhhhhHhhhhhchhHHHHHHHHHHHHHHhhh
Q 021924 165 GVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKL 202 (305)
Q Consensus 165 G~~glyrG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 202 (305)
|+.-.+|-+.-.++..+|..++.+.+|+..++.-....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666777788888889999998887665543
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=12.76 E-value=1.8e+02 Score=18.49 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=26.9
Q ss_pred CcccccchhhhhHhhhhhchhHHHHHHHHHHHHHHhhh
Q 021924 165 GVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKL 202 (305)
Q Consensus 165 G~~glyrG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 202 (305)
|+...+|-+.-.++..+|..++.+.+|+..++......
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 34444566666677778888888999998887665543
No 9
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=11.74 E-value=2.6e+02 Score=16.51 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhCcccccch
Q 021924 154 LDCALRTVKQEGVMAIFRG 172 (305)
Q Consensus 154 ~~~~~~i~~~~G~~glyrG 172 (305)
.-+++++++.+|+..+--|
T Consensus 5 rlaikeicktdgipnikwg 23 (82)
T 3fbl_A 5 RLAIKEICKTDGIPNIKWG 23 (82)
T ss_dssp HHHHHHHHHHTTCCGGGHH
T ss_pred HHHHHHHHccCCCCcchhH
Confidence 3568899999998654333
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=11.46 E-value=1.5e+02 Score=19.41 Aligned_cols=35 Identities=3% Similarity=0.085 Sum_probs=27.9
Q ss_pred hCccccccchhHHHHhhhhhhhHHHHHHHHHHHhh
Q 021924 266 AGLKGCYTGLGPTIMRAFPANATAIVTWELAGKLL 300 (305)
Q Consensus 266 eG~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 300 (305)
.|+...+|-+.-+++..+|..++...+|+...+..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 45666777777788889999999999998877654
Done!