BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021925
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 143/265 (53%), Gaps = 13/265 (4%)
Query: 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
M+ I + GHERPLT +KYNK+GDLLFSC+KD + +VW++ NGERLGT GH G +W DV
Sbjct: 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
+ +TGSAD + KLW+V G + T+ P + V+F+ + D M+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRI---------NRAVWGPLNRTIISAGEDAIVR 171
+I++ I RD A E + + P +I A W + II+ +D +
Sbjct: 143 SINIYEIERDSATH--ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231
+D + D H+K+I+ + + D ++F+T S D ++ L D TL+++K Y T
Sbjct: 201 KYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258
Query: 232 ERPVNAVTMSPLLDHVCIGEPQTIK 256
+ P+N ++PL + + +G Q K
Sbjct: 259 DCPLNTAVITPLKEFIILGGGQEAK 283
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 23/240 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + ++ DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 66 TLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S R V F+ G +A + D ++L
Sbjct: 358 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 411
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P ++TI SA +D V++W+ G+LL+
Sbjct: 412 --------WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQT 462
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + DG + S DK+ KLW+ R +L++T V V SP
Sbjct: 463 ---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 518
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 23/240 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++ H + + ++ DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 66 TLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S R V F+ G +A + D ++L
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 124
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+LL+
Sbjct: 125 --------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 175
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + DG + S DK+ KLW+ R +L++T V V SP
Sbjct: 176 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + ++ DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQ 439
Query: 66 TLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S R V F+ G +A + D ++L
Sbjct: 440 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 493
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+LL+
Sbjct: 494 --------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 544
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
TGH ++ +A + DG + S DK+ KLW+
Sbjct: 545 ---LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 109/240 (45%), Gaps = 23/240 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + + DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 316
Query: 66 TLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S V F+ G +A + D ++L
Sbjct: 317 TIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL----- 370
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+LL+
Sbjct: 371 --------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 421
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + D + S DK+ KLW+ R +L++T V V SP
Sbjct: 422 ---LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 477
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 108/240 (45%), Gaps = 23/240 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + ++ DG + S + D T +W NG+ L T GH+ +V S D
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 234
Query: 66 TLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S V F G +A + D ++L
Sbjct: 235 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL----- 288
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+ L+
Sbjct: 289 --------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQT 339
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + DG + S DK+ KLW+ R +L++T V V SP
Sbjct: 340 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 395
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVT 239
+KE ++ H ++ +A + DG + S DK+ KLW+ R +L++T V V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 240 MSP 242
SP
Sbjct: 65 FSP 67
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 42/245 (17%)
Query: 3 PILMKGHE-RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61
P ++KGH+ +T L++ G+ + S + D+T VW A G+ L T GH G VW +
Sbjct: 111 PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM- 167
Query: 62 RDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
RD++ +I+GS D+T K+WN ETG + T + S R +
Sbjct: 168 RDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH-------------------- 206
Query: 121 AIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172
+H KR+ D + G+ + +L G + + R ++S D +V++
Sbjct: 207 -LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKV 263
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
WD ET L GH + SL DG H ++GSLD S ++WD T I T
Sbjct: 264 WDPETETCLHTLQ---GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 233 RPVNA 237
+ + +
Sbjct: 319 QSLTS 323
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 20/208 (9%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84
+ S ++D T VW + G+ L GH AV C V D +++G+ D K+W+ ET
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETE 269
Query: 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143
L T + S+ F D + V++ L+++I V + + G + L
Sbjct: 270 TCLHTLQGHTNRVYSLQF---DGIHVVSG----SLDTSIRVWDV------ETGNCIHTLT 316
Query: 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203
G Q + + ++S D+ V+IWD +TG+ L+ H+ +T L +
Sbjct: 317 GHQSLTSGM--ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNK 372
Query: 204 SHFLTGSLDKSAKLWDARTLELIKTYVT 231
+ +T S D + KLWD +T E I+ VT
Sbjct: 373 NFVITSSDDGTVKLWDLKTGEFIRNLVT 400
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH + L++ DG + S + D + VW + G + T GH ++ +D++
Sbjct: 275 LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-KDNI 331
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN 91
L++G+AD T K+W+++TG L T
Sbjct: 332 -LVSGNADSTVKIWDIKTGQCLQTLQ 356
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TG LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 85 LLVSASDDKTLKIWDVSS------------------------------------------ 102
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 103 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 150
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 151 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 189
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 96 LLVSASDDKTLKIWDVSS------------------------------------------ 113
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 114 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 161
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 162 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 219
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 168
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 75 LLVSASDDKTLKIWDVSS------------------------------------------ 92
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 93 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 140
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 141 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 171
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 78 LLVSASDDKTLKIWDVSS------------------------------------------ 95
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 96 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 143
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 144 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 79 LLVSASDDKTLKIWDVSS------------------------------------------ 96
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 97 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 144
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 145 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 173
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 80 LLVSASDDKTLKIWDVSS------------------------------------------ 97
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 98 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 145
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 146 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 79 LLVSASDDKTLKIWDVSS------------------------------------------ 96
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 97 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 144
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 145 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L + + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 177
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 84 LLVSASDDKTLKIWDVSS------------------------------------------ 101
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 102 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 149
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 150 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 85 LLVSASDDKTLKIWDVSS------------------------------------------ 102
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 103 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 150
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 151 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 85 LLVSASDDKTLKIWDVSS------------------------------------------ 102
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 103 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 150
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 151 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 194
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 295
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 101 LLVSASDDKTLKIWDVSS------------------------------------------ 118
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 119 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 166
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 167 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TG LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
+++GS D++ ++W+V+TG L T PA S DP SA+H
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 182
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
R G + I+S+ D + RIWDT +G+ LK
Sbjct: 183 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 212
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
+ ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 213 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 103 LLVSASDDKTLKIWDVSS------------------------------------------ 120
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 121 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 168
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 169 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 56/206 (27%)
Query: 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
++ DG L + A+D +W +N + + +GH ++ D L++GS D+T +
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
+W++ TG T + + +V + GD K IA
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDG------------------KYIA--------- 223
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----TGHKKT 193
G ++RA VR+WD+ETG L++ D E TGHK +
Sbjct: 224 --------AGSLDRA-----------------VRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWD 219
+ S+ DG ++GSLD+S KLW+
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 42/194 (21%)
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
H V C S D L TG ++T +++ V G+ + + DS A
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAAN------------- 108
Query: 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRTIISAGEDA 168
+DP E++ P I + P + + + ED
Sbjct: 109 ------------------KDP-----ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
++RIWD E K++ GH++ I SL G ++GS D++ ++WD RT + T
Sbjct: 146 LIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202
Query: 229 YVTERPVNAVTMSP 242
E V V +SP
Sbjct: 203 LSIEDGVTTVAVSP 216
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
++++GHE+ + L Y GD L S + D T +W G+ T +G D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 64 SMTLITGSADQTAKLWNVETG---------AQLFTFNFDSPARSVDFAVGDKLAVITTDP 114
+ GS D+ ++W+ ETG + T + DS V G + + D
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
++L + + + G + G + + + I+S +D V WD
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSH-------FLTGSLDKSAKLWDARTL 223
++G L GH+ ++ S+A A+GS F TGS D A++W + +
Sbjct: 339 KKSGNPLL---MLQGHRNSVISVA-VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 12 PLTY-LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG 70
P Y L + D + FSC D VW N + ++GH C D+S D L TG
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR 129
D T + W++ G QL +F S S+ + G+ LAV +E+ +HV + +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHVNKPDK 258
Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG 189
VL LK + + +S G+D ++ W T G + +S + +
Sbjct: 259 YQLHLHESCVLSLK----------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS- 307
Query: 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
++ S + D + +TGS DK A +++
Sbjct: 308 ---SVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
P ++ S D + +WD L+++ GH + + + DG+ TG LD +
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 216 KLWDAR 221
+ WD R
Sbjct: 208 RSWDLR 213
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
HE + LK+ G S KD+ W G + + + +V CD+S D ++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV 322
Query: 69 TGSADQTAKLWNV 81
TGS D+ A ++ V
Sbjct: 323 TGSGDKKATVYEV 335
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 52/251 (20%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH ++ + + +G+ S + DH+ +W NG+ + GH V S D+
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
+++G D ++WNV+ G + T + A D ++ + P ++
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRG--------AHTDWVSCVRFSPSLD-------- 165
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
P+ I+S G D +V++WD TG+L+ +
Sbjct: 166 -----------------------------APV---IVSGGWDNLVKVWDLATGRLVTD-- 191
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245
GH +TS+ + DGS + D A+LWD E + P+N + SP
Sbjct: 192 -LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRY 250
Query: 246 HVCIGEPQTIK 256
+C + I+
Sbjct: 251 WMCAATEKGIR 261
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 11/156 (7%)
Query: 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
D ++ S D+ VW G + +GH V VS D + D A+LW+
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPADQGGE 137
+ G L +P + F+ T+ +L + + +A P QG +
Sbjct: 225 LTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELA--PEHQGSK 282
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
++ P+ W T+ S D ++R+W
Sbjct: 283 KIV----PE--CVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
++++ H + + +++DG + SC D T V+ A+ GE+L + H V CC S D
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFMELN 119
+ T S D+ K+WN TG + T++ S + LA ++D F++L
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL- 733
Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
D + + + G +N + P ++ + S D +++WD +
Sbjct: 734 ---------WDLNQKECRNTMF--GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 180 ----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
L D + + + + +ADG+ + + +K
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK 826
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 116/294 (39%), Gaps = 55/294 (18%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
+K HE + ++ D + +C+ D +W + GE + TY H+ V CC + S
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 65 -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
+ L TGS+D KLW++ + + F + F+ DKL A + D ++L
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 119 -----NSAIHVKRIARDPADQGGESVLILK------------------------------ 143
+I+VK+ + D + +I+K
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLL 838
Query: 144 -----GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
G I + P N + A V +W+T++ + + GH + +
Sbjct: 839 GEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC---RGHLSWVHGVM 895
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV-----TMSPLLDHV 247
+ DGS FLT S D++ +LW+ + + + ++ V+ V M +DH+
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHI 949
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 25/188 (13%)
Query: 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61
+ I ++GH+ + + K+ LL S + D T VW G + + H G V CD+S
Sbjct: 1042 KCIFLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDIS 1100
Query: 62 RDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNS 120
D+ + SAD+TAK+W+ + L + R F+V L D N
Sbjct: 1101 HDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD-----NG 1155
Query: 121 AIHVKRIARDPADQGGESVLILKGPQ---------GRINRAVWGPLNRTIISAGEDAIVR 171
I + ++ GE +L L P G + + P + +ISAG ++
Sbjct: 1156 EIRIWNVS------NGE-LLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIK 1206
Query: 172 IWDTETGK 179
W+ TG+
Sbjct: 1207 WWNVVTGE 1214
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 99/264 (37%), Gaps = 54/264 (20%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH + Y ++ L + +W D+ ++ RGH V S D +
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 68 ITGSADQTAKLWNVETGA------------------QLFTFNFDSPAR---------SVD 100
+T S DQT +LW + ++ D R +D
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQID 963
Query: 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI-------NRAV 153
+ +++ P H++ IA D+ G ++ IL+ RI + V
Sbjct: 964 YLTEAQVSCCCLSP--------HLQYIAF--GDENG-AIEILELVNNRIFQSRFQHKKTV 1012
Query: 154 WGPL----NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209
W +T+IS+ +DA +++W+ + K + GH++T+ + S L+
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR----GHQETVKDF-RLLKNSRLLSW 1067
Query: 210 SLDKSAKLWDARTLELIKTYVTER 233
S D + K+W+ T K +V +
Sbjct: 1068 SFDGTVKVWNIITGNKEKDFVCHQ 1091
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
S L+++ + A + + I S G D ++++ ETG+ L E H+ +
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI---KAHEDEVLCC 669
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
A + D T S+DK K+W++ T EL+ TY
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 125 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
+RIA AD + GE +L +K + + + +R I + D V+IW++
Sbjct: 634 QRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSM 693
Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 233
TG+L+ D+ H + + H L TGS D KLWD E T +
Sbjct: 694 TGELVHTYDE---HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN 750
Query: 234 PVNAVTMSP 242
VN SP
Sbjct: 751 SVNHCRFSP 759
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
N ++S D V++W+ TG KE D H+ T+ S + D + F + S DK+AK+
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGN--KEKDF-VCHQGTVLSCDISHDATKFSSTSADKTAKI 1117
Query: 218 W 218
W
Sbjct: 1118 W 1118
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
M GH+ ++ + +GD + S ++D T +W G + T+ GH V ++D
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 66 TLITGSADQTAKLWNVETG------------AQLFTFNFDSPARSVDFAVGDKLAVITTD 113
+ + S DQT ++W V T + ++ +S S+ A G + +
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK-SGK 306
Query: 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
P L S K I G ++ L G + ++ + I+S +D +R+W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
D + + +K + H+ +TSL + +TGS+D++ K+W+ R
Sbjct: 366 DYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 21/237 (8%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+KGH + + ++ G LL SC+ D T +W E + T GH+ V + +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 66 TLITGSADQTAKLWNVETGAQLFTF------------NFDSP--ARSVDFAVGDKLAVIT 111
+++ S D+T K+W V+TG + TF N D A + V T
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 112 TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171
+ EL HV + S+ G + + + GP ++S D ++
Sbjct: 266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPF---LLSGSRDKTIK 321
Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+WD TG L GH + + + G L+ + DK+ ++WD + +KT
Sbjct: 322 MWDVSTGMCLMTL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 91/247 (36%), Gaps = 56/247 (22%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH P+T + ++ ++ S ++D T VW + G+ T +GH +V
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L + SAD T KLW DF
Sbjct: 164 LLASCSADMTIKLW--------------------DF------------------------ 179
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
QG E + + G ++ P I+SA D +++W+ +TG +K
Sbjct: 180 --------QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF- 230
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP-VNAVTMSPLL 244
TGH++ + + DG+ + S D++ ++W T E R V ++ +P
Sbjct: 231 --TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 245 DHVCIGE 251
+ I E
Sbjct: 289 SYSSISE 295
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
+ + GH+ + + ++ G + SCA D T VW N + T H V D +
Sbjct: 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 391
Query: 64 SMTLITGSADQTAKLWN 80
+ ++TGS DQT K+W
Sbjct: 392 APYVVTGSVDQTVKVWE 408
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
+ ++++ H + + +++DG + SC D T V+ A+ GE+L + H V CC
Sbjct: 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFM 116
S D + T SAD+ K+W+ TG + T++ S + LA + D F+
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
+L E + G +N + P + + S D +R+WD
Sbjct: 726 KLWDL------------NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 177 TG 178
+
Sbjct: 774 SA 775
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
+K HE + ++ D + +C+ D +W + G+ + TY H+ V CC + S
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 65 -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
+ L TGS D KLW++ + + F + F+ D+L A + D + L
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 119 -----NSAIHVKRI---ARDPADQ------------GGESVL------------------ 140
+I+VKR + DP + G+ ++
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832
Query: 141 --ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
I G I + P + + A V +W+ ++ LK +D GH + +
Sbjct: 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCR-GHLSWVHGVM 889
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
+ DGS FLT S D++ ++W+ + + V ++ ++ V
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 12/179 (6%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
+ ++ H+ + + +D LL S + D T VW G + H G V C +S D
Sbjct: 1038 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
+ + SAD+TAK+W+ + + L + R F++ D + + T D N I
Sbjct: 1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDD----NGEI 1151
Query: 123 HVKRIARDPADQGGESVLILKGPQ---GRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
+ ++ + + +G G + + P ++T++SAG ++ W+ TG
Sbjct: 1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
S L+++ + A + + I S G D ++++ ETG+ L + H+ +
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 663
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
A ++D S+ T S DK K+WD+ T +L+ TY
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH++ + ++++ DG L S ++D VW G+ + + H V + +DS L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RL 1058
Query: 68 ITGSADQTAKLWNVETG----------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
++ S D T K+WNV TG + + S A DK A I + +
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS---FD 1115
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-AIVRIWDTE 176
L S +H LKG G + + + L+ +++ G+D +RIW+
Sbjct: 1116 LLSPLHE-----------------LKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVS 1157
Query: 177 TGKLL 181
G+LL
Sbjct: 1158 DGQLL 1162
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 125 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
+RIA AD + GE +L +K + + + + I + D V+IWD+
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 233
TGKL+ D+ H + + +H L TGS D KLWD E T +
Sbjct: 688 TGKLVHTYDE---HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 234 PVNAVTMSP 242
VN SP
Sbjct: 745 SVNHCRFSP 753
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 26/224 (11%)
Query: 16 LKYNKDGDLLFSCAKDHTPTVWFAD-----------NGERLGTYRGHNGAVWCCDVSRDS 64
+ Y + + C H V F D N + GH AV + D
Sbjct: 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
TLI+ S D ++WN +TG +F + +L + D +++ + I
Sbjct: 1016 KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-T 1074
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI RD QG + S D +IW + LL
Sbjct: 1075 GRIERD-----------FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPL 1120
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+ GH + A + DG TG + ++W+ +L+ +
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
+ ++++ H + + +++DG + SC D T V+ A+ GE+L + H V CC
Sbjct: 613 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFM 116
S D + T SAD+ K+W+ TG + T++ S + LA + D F+
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
+L E + G +N + P + + S D +R+WD
Sbjct: 733 KLWDL------------NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 177 TG 178
+
Sbjct: 781 SA 782
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
+K HE + ++ D + +C+ D +W + G+ + TY H+ V CC + S
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 65 -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
+ L TGS D KLW++ + + F + F+ D+L A + D + L
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 119 -----NSAIHVKRI---ARDPADQ------------GGESVL------------------ 140
+I+VKR + DP + G+ ++
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839
Query: 141 --ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
I G I + P + + A V +W+ ++ LK +D GH + +
Sbjct: 840 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCR-GHLSWVHGVM 896
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
+ DGS FLT S D++ ++W+ + + V ++ ++ V
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 936
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 12/179 (6%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
+ ++ H+ + + +D LL S + D T VW G + H G V C +S D
Sbjct: 1045 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1103
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
+ + SAD+TAK+W+ + + L + R F++ D + + T D N I
Sbjct: 1104 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDD----NGEI 1158
Query: 123 HVKRIARDPADQGGESVLILKGPQ---GRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
+ ++ + + +G G + + P ++T++SAG ++ W+ TG
Sbjct: 1159 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1215
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
S L+++ + A + + I S G D ++++ ETG+ L + H+ +
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 670
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
A ++D S+ T S DK K+WD+ T +L+ TY
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH++ + ++++ DG L S ++D VW G+ + + H V + +DS L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RL 1065
Query: 68 ITGSADQTAKLWNVETG----------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
++ S D T K+WNV TG + + S A DK A I + +
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS---FD 1122
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-AIVRIWDTE 176
L S +H LKG G + + + L+ +++ G+D +RIW+
Sbjct: 1123 LLSPLHE-----------------LKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVS 1164
Query: 177 TGKLL 181
G+LL
Sbjct: 1165 DGQLL 1169
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 125 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
+RIA AD + GE +L +K + + + + I + D V+IWD+
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 233
TGKL+ D+ H + + +H L TGS D KLWD E T +
Sbjct: 695 TGKLVHTYDE---HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 234 PVNAVTMSP 242
VN SP
Sbjct: 752 SVNHCRFSP 760
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 26/224 (11%)
Query: 16 LKYNKDGDLLFSCAKDHTPTVWFAD-----------NGERLGTYRGHNGAVWCCDVSRDS 64
+ Y + + C H V F D N + GH AV + D
Sbjct: 963 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1022
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
TLI+ S D ++WN +TG +F + +L + D +++ + I
Sbjct: 1023 KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-T 1081
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI RD QG + S D +IW + LL
Sbjct: 1082 GRIERD-----------FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPL 1127
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+ GH + A + DG TG + ++W+ +L+ +
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 23/230 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RD 63
+ GH+ + LKY G +L S + D T VW G + GHN V C D+ ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64 SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARS---VDFAVGDKLAVITT 112
++TGS D T +W + + + + F +P + V G +V T
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
+ ++ + I D A + + IL G RI ++ + ISA D +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
RIWD E G+L+ T + L + +D ++ + D S + WDA
Sbjct: 335 RIWDLENGELMYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDA 379
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 106/242 (43%), Gaps = 30/242 (12%)
Query: 6 MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++GH +T L++ + + + + A D V+ + N + L GH+G VW +
Sbjct: 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123
+ L++GS D+T ++W+++ G F +S R +D + I T ++ +H
Sbjct: 175 I-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS---RDNTLH 230
Query: 124 VKRIARDPA--DQGGES---------------VLILKGPQGRINRAVWGPLNRTIISAGE 166
V ++ ++ + D G E V +L+G + R V G N ++S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVSGHGN-IVVSGSY 288
Query: 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
D + +WD K L +GH I S + ++ S+D + ++WD EL+
Sbjct: 289 DNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345
Query: 227 KT 228
T
Sbjct: 346 YT 347
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++ GH + Y+ + S + D T +W +NGE + T +GH V +S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D 362
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
L++ +AD + + W+ ++ F+++ + + F V D + V
Sbjct: 363 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
D + S +D+T +W + E GH G+V C + D +ITGS+D T ++W+
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC--LQYDERVIITGSSDSTVRVWD 199
Query: 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140
V TG L T A + + + V + + +I V +A P D VL
Sbjct: 200 VNTGEMLNTLIHHCEA-VLHLRFNNGMMVTCSK-----DRSIAVWDMA-SPTDITLRRVL 252
Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200
+ G + +N + ++ I+SA D +++W+T T + ++ + GHK+ I L
Sbjct: 253 V--GHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYR 305
Query: 201 ADGSHFLTGSLDKSAKLWD 219
++GS D + +LWD
Sbjct: 306 --DRLVVSGSSDNTIRLWD 322
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++ GH + L+Y D ++ + + D T VW + GE L T H AV + ++
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN 223
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
++T S D++ +W++ + D R V VG + AV D + +
Sbjct: 224 GMMVTCSKDRSIAVWDMASPT-------DITLRRV--LVGHRAAVNVVDFDDKYIVSASG 274
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
R + E V L G + I A +R ++S D +R+WD E G L+
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244
+ GH++ + + D ++G+ D K+WD L+ P + + L+
Sbjct: 333 E---GHEELVRCI--RFDNKRIVSGAYDGKIKVWD-----LVAALDPRAPAGTLCLRTLV 382
Query: 245 DH 246
+H
Sbjct: 383 EH 384
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
+R +L+ GH + + + D + S + D T VW E + T GH + C
Sbjct: 248 LRRVLV-GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELN 119
RD + +++GS+D T +LW++E GA L + R + F ++ D +++
Sbjct: 305 -RDRL-VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVW 361
Query: 120 SAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
+ A DP G L L GR+ R + I+S+ D + IWD
Sbjct: 362 DLV----AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
++ I+S D ++IWD T L+ TGH ++ L D +TGS D + ++
Sbjct: 143 DQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSVLCLQ--YDERVIITGSSDSTVRV 197
Query: 218 WDARTLELIKTYV 230
WD T E++ T +
Sbjct: 198 WDVNTGEMLNTLI 210
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 23/230 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RD 63
+ GH+ + LKY G +L S + D T VW G + GHN V C D+ ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64 SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARS---VDFAVGDKLAVITT 112
++TGS D T +W + + + + F +P + V G +V T
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
+ ++ + I D A + + IL G RI ++ + ISA D +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQX--KCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
RIWD E G+L T + L + +D ++ + D S + WDA
Sbjct: 335 RIWDLENGELXYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDA 379
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 30/242 (12%)
Query: 6 MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++GH +T L++ + + + + A D V+ + N + L GH+G VW +
Sbjct: 117 LRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123
+ L++GS D+T ++W+++ G F +S R +D + I T ++ +H
Sbjct: 175 I-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS---RDNTLH 230
Query: 124 VKRIARDPA--DQGGES---------------VLILKGPQGRINRAVWGPLNRTIISAGE 166
V ++ ++ + D G E V +L+G + R V G N ++S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV-RTVSGHGN-IVVSGSY 288
Query: 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
D + +WD K L +GH I S + ++ S D + ++WD EL
Sbjct: 289 DNTLIVWDVAQXKCLY---ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELX 345
Query: 227 KT 228
T
Sbjct: 346 YT 347
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++ GH + Y+ + S + D T +W +NGE T +GH V +S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--D 362
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
L++ +AD + + W+ ++ F+++ + + F V D + V
Sbjct: 363 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 17/214 (7%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMT 66
H L+ + + + + D T +W ++G+ L ++ GH V C D+ S T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 67 LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVD-FAVGDKLAVITTDPFMELNSAIHV 124
++G D+ A +W++ +G + F +S SV + GD A + D L +
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL----YD 268
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
R R+ A ES++ ++ ++ G R + + D + +WD G +
Sbjct: 269 LRADREVAIYSKESIIF---GASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS-- 320
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
GH+ +++L + DG+ F +GS D + ++W
Sbjct: 321 -ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
I++A D +WD E+G+LL +S G LA + G+ F++G DK A +WD
Sbjct: 169 ILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 221 RTLELIKTYVT-ERPVNAVTMSP 242
R+ + ++ + T E VN+V P
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYP 250
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 53/185 (28%)
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
H + C + M ++T S D T LW+VE+G L +F+ G V+
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH------------GHGADVL 200
Query: 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
D P++ G T +S G D
Sbjct: 201 CLDLA---------------PSETG-----------------------NTFVSGGCDKKA 222
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
+WD +G+ ++ + H+ + S+ G F +GS D + +L+D R + Y
Sbjct: 223 MVWDMRSGQCVQAFET---HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279
Query: 231 TERPV 235
E +
Sbjct: 280 KESII 284
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVW 37
R ++ GHE ++ L+ + DG S + DHT VW
Sbjct: 318 RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 50 GHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108
GH G C D T LITGS DQT LW+V TG ++ F + P+ + +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 109 VITTDPFMELNSAIHVK----RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164
+ + F+ + V+ RI +V G +G IN + P + +
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRIT-------SRAVRTYHGHEGDINSVKFFPDGQRFGTG 267
Query: 165 GEDAIVRIWDTETGKLL----KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
+D R++D TG L +E D+ +TS+A + G G + +WD
Sbjct: 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327
Query: 221 RTLELI 226
E++
Sbjct: 328 LLAEMV 333
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV-G 104
T +GH+G V+ D + + +++ S D +WN T + P FA G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRT-II 162
+A L+SA + ++ G V +L G +G + + P T +I
Sbjct: 121 QSVAC------GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 163 SAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWD 219
+ D +WD TG+ + S+ +GH + SL+ + + + F++GS D + +LWD
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 220 AR-TLELIKTYVT-ERPVNAVTMSP 242
R T ++TY E +N+V P
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFP 259
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 48/215 (22%)
Query: 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDS 64
GH + L N + ++ S + D T +W + TY GH G + D
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
TGS D T +L+++ TG QL +N + P R+ ++L ++T+ F
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNRE-PDRN-----DNELPIVTSVAFS-------- 307
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKE 183
+ G R + + + +WDT ++ L
Sbjct: 308 -----------------ISG--------------RLLFAGYSNGDCYVWDTLLAEMVLNL 336
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
+ H+ I+ L ++DGS TGS DK+ K+W
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 121
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 122 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 175 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 233 RPVNAVTMSP 242
V ++ SP
Sbjct: 232 DEVFSLAFSP 241
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 155
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 216 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 275
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
K + W +T+ + D ++R+W T
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
V ++ SP
Sbjct: 238 DEVFSLAFSP 247
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
V ++ SP
Sbjct: 238 DEVFSLAFSP 247
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 161
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
K + W +T+ + D ++R+W T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
V ++ SP
Sbjct: 238 DEVFSLAFSP 247
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 161
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
K + W +T+ + D ++R+W T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSP 242
V ++ SP
Sbjct: 238 DEVFSLAFSP 247
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 161
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
+ W +T+ + D ++R+W T
Sbjct: 282 SAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 20/259 (7%)
Query: 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
+KGH +T + D++ S ++D T +W + G RGH+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
+S D ++GS D T +LW++ TG F SV F+ ++ V + D ++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
L + + V + + P N I+S G D +V++W+
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 204
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
KL TG+ T+T + DGS +G D A LWD + + T +NA
Sbjct: 205 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 238 VTMSPLLDHVCIGEPQTIK 256
+ SP +C +IK
Sbjct: 262 LCFSPNRYWLCAATGPSIK 280
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH ++ + + DG S + D T +W G + GH V S D+
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 66 TLITGSADQTAKLWNV----------ETGAQLFTFNFDSPARSVDFAVG---DKLAVITT 112
+++GS D+T KLWN E+ ++ + SP S V DKL +
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 113 DPFMELNS-----AIHVKRIARDP----ADQGGE--SVLILKGPQGR----------INR 151
+L + ++ + P GG+ ++ +G+ IN
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSH 205
+ P NR + A ++IWD E ++ E +E TSLA +ADG
Sbjct: 262 LCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320
Query: 206 FLTGSLDKSAKLW 218
G D ++W
Sbjct: 321 LFAGYTDNLVRVW 333
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%)
Query: 7 KGHERPLTYLKY--NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
+ H ++ +++ N ++ SC D VW N + + GH G + VS D
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 121
+G D A LW++ G L+T + ++ F+ T P +L
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
I V + ++ ++ + PQ W +T+ + D +VR+W G
Sbjct: 288 IIVDELKQEVISTSSKA----EPPQ--CTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 24/270 (8%)
Query: 5 LMKGHERPLTYL------KYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------RGH 51
+++GH +T + K N+D +L S ++D T +W E+ G + GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI 110
N V +S+++ I+ S D+T +LW++ TG F S SV F+ D ++
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQIL 134
Query: 111 TTDPFMEL---NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167
+ E+ N K + + + + P + V P S G D
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV-QPFAPYFASVGWD 193
Query: 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-I 226
+++W+T + H+ + L+ + +G + TG DK +WD L
Sbjct: 194 GRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 227 KTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256
+ + +N + +P L V +G Q +K
Sbjct: 250 REFDAGSTINQIAFNPKLQWVAVGTDQGVK 279
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 20/259 (7%)
Query: 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
+KGH +T + D++ S ++D T +W + G RGH+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
+S D ++GS D T +LW++ TG F SV F+ ++ V + D ++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
L + + V + + P N I+S G D +V++W+
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 181
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
KL TG+ T+T + DGS +G D A LWD + + T +NA
Sbjct: 182 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 238 VTMSPLLDHVCIGEPQTIK 256
+ SP +C +IK
Sbjct: 239 LCFSPNRYWLCAATGPSIK 257
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH ++ + + DG S + D T +W G + GH V S D+
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 66 TLITGSADQTAKLWNV----------ETGAQLFTFNFDSPARSVDFAVG---DKLAVITT 112
+++GS D+T KLWN E+ ++ + SP S V DKL +
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 113 DPFMELNS-----AIHVKRIARDP----ADQGGE--SVLILKGPQGR----------INR 151
+L + ++ + P GG+ ++ +G+ IN
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSH 205
+ P NR + A ++IWD E ++ E +E TSLA +ADG
Sbjct: 239 LCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 297
Query: 206 FLTGSLDKSAKLW 218
G D ++W
Sbjct: 298 LFAGYTDNLVRVW 310
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%)
Query: 7 KGHERPLTYLKY--NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
+ H ++ +++ N ++ SC D VW N + + GH G + VS D
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 121
+G D A LW++ G L+T + ++ F+ T P +L
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 264
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
I V + ++ ++ + PQ W +T+ + D +VR+W G
Sbjct: 265 IIVDELKQEVISTSSKA----EPPQ--CTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 28/250 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K + I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD--IDKKASXIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 233 RPVNAVTMSP 242
V ++ SP
Sbjct: 238 DEVFSLAFSP 247
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76
K + D + S D W + + + GHN + S D + + D
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---- 132
LWN+ +T + S+ F+ ++ +A +K + DP
Sbjct: 221 XLWNLAAKKAXYTLSAQDEVFSLAFS--------PNRYWLAAATATGIKVFSLDPQYLVD 272
Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
D E K + W +T+ + D ++R+W T
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-SRDS 64
+ GH+ + L + +DG ++ S + D T VW G + + HN +VW V S
Sbjct: 100 LIGHQGNVCSLSF-QDG-VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE 155
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+T SAD+T KLW + + F+ + R LAV+ F+ ++ +
Sbjct: 156 NKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR--------HLAVVDDGHFISCSNDGLI 207
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL 180
K + D +L+ +G + L N I+S GED VRIW E G L
Sbjct: 208 KLVDXHTGD-------VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
++A D +++W + K++K H + LA DG HF++ S D KL D
Sbjct: 159 LTASADKTIKLWQND--KVIKTFSGI--HNDVVRHLAVVDDG-HFISCSNDGLIKLVDXH 213
Query: 222 TLELIKTYVT-ERPVNAVTMSPLLDHVCIGEPQTIK 256
T ++++TY E V + + P D V GE +T++
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVR 249
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
+LWN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
+A D S F +G LD++ K+W T T ER VN V PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138
FT R V++ + DK +IT + + + Q
Sbjct: 172 QSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----------QTKSC 220
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V L+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC----------- 160
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 161 -LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
+LWN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
+A D S F +G LD++ K+W T T ER VN V PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138
FT R V++ + DK +IT + + + Q
Sbjct: 172 QSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----------QTKSC 220
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V L+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC----------- 160
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 161 -LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
+LWN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
+A D S F +G LD++ K+W T T ER VN V PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138
FT R V++ + DK +IT + + + Q
Sbjct: 172 QSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----------QTKSC 220
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V L+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASG------------ 159
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 160 CLDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 344 DSFLKIWN 351
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
T RGH ++ DS L++ S D +W+ T ++ S A S
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
++ L I + L + R++R+ L G G ++ + N+
Sbjct: 121 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 167
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKLWD
Sbjct: 168 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
R +T+ E +NA+ P
Sbjct: 224 VREGMCRQTFTGHESDINAICFFP 247
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 205 PDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATC 261
Query: 216 KLWDARTLELIKTYVTERPVNAVT 239
+L+D R + + TY + + +T
Sbjct: 262 RLFDLRADQELMTYSHDNIICGIT 285
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 269 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 313
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 314 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
GH G + CC D+ ++T S D T LW++ETG Q TF + GD +++
Sbjct: 152 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT---------GDVMSL 201
Query: 110 -ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168
+ D + ++ A D + G G + IN + P + +DA
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
R++D + L + ITS++ + G L G D + +WDA
Sbjct: 260 TCRLFDLRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
T RGH ++ DS L++ S D +W+ T ++ S A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
++ L I + L + R++R+ L G G ++ + N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
R +T+ E +NA+ P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 302
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 303 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
+L+D R + + TY + + +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
GH G + CC D+ ++T S D T LW++ETG Q TF + GD +++
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT---------GDVMSL 190
Query: 110 -ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168
+ D + ++ A D + G G + IN + P + +DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
R++D + L + ITS++ + G L G D + +WDA
Sbjct: 249 TCRLFDLRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
T RGH ++ DS L++ S D +W+ T ++ S A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
++ L I + L + R++R+ L G G ++ + N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
R +T+ E +NA+ P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 302
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 303 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
+L+D R + + TY + + +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
GH G + CC D+ ++T S D T LW++ETG Q TF + GD +++
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT---------GDVMSL 190
Query: 110 -ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168
+ D + ++ A D + G G + IN + P + +DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
R++D + L + ITS++ + G L G D + +WDA
Sbjct: 249 TCRLFDLRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
T RGH ++ DS L++ S D +W+ T ++ S A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
++ L I + L + R++R+ L G G ++ + N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
R +T+ E +NA+ P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 302
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 303 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
+L+D R + + TY + + +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
GH G + CC D+ ++T S D T LW++ETG Q TF + GD +++
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT---------GDVMSL 190
Query: 110 -ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168
+ D + ++ A D + G G + IN + P + +DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
R++D + L + ITS++ + G L G D + +WDA
Sbjct: 249 TCRLFDLRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-------ARSV 99
T RGH ++ DS L++ S D +W+ T ++ S A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159
++ L I + L + R++R+ L G G ++ + N+
Sbjct: 110 NYVACGGLDNICS--IYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQ 156
Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKLWD
Sbjct: 157 IVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 220 ARTLELIKTYVT-ERPVNAVTMSP 242
R +T+ E +NA+ P
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP 236
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVT 239
+L+D R + + TY + + +T
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT 274
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 302
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 303 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
GH G + CC D+ ++T S D T LW++ETG Q TF + GD +++
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT---------GDVMSL 190
Query: 110 -ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168
+ D + ++ A D + G G + IN + P + +DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
R++D + L + ITS++ + G L G D + +WDA
Sbjct: 249 TCRLFDLRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAV----WC 57
+ GH + + L++ DG L S D+ VW + GE L T+ H GAV WC
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 58 CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
S L TG ++D+ ++WNV +GA L + S S+ ++ K +I+ F
Sbjct: 206 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 261
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
+ N + I + P V LKG R+ P T+ SA D +R+W
Sbjct: 262 AQ-NQLV----IWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 86/224 (38%), Gaps = 17/224 (7%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
+ + A D++ +W A +G+ L + + V+ ++ L G++ +LW+V+
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
+L S ++ ++ + ++ L+S I V L
Sbjct: 98 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
G + W P R + S G D +V +W + G+ T H+ + ++A
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
S+ L G+ D+ ++W+ + + V ++ SP
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 250
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 45/138 (32%)
Query: 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKE 187
P + G + QG + W P +++ G D +RIW+ +G L D
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 188 T----------------------------------------GHKKTITSLAKAADGSHFL 207
+ GH + SL + DG+
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 208 TGSLDKSAKLWDARTLEL 225
+ + D++ +LW R EL
Sbjct: 301 SAAADETLRLW--RCFEL 316
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
++WN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLD 245
+A D S F +G LD++ K+W T T ER VN V PL D
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138
FT R V++ + DK +IT + + + Q
Sbjct: 172 QSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----------QTKSC 220
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V L+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC----------- 160
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 161 -LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
+ GH + + L++ DG L S D+ VW + GE L T+ H GAV WC
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
S + + G++D+ ++WNV +GA L + S S+ ++ K +I+ F +
Sbjct: 286 PWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQ 343
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
N + I + P V LKG R+ P T+ SA D +R+W
Sbjct: 344 -NQLV----IWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 86/224 (38%), Gaps = 17/224 (7%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
+ + A D++ +W A +G+ L + + V+ ++ L G++ +LW+V+
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
+L S ++ ++ + ++ L+S I V L
Sbjct: 178 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
G + W P R + S G D +V +W + G+ T H+ + ++A
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
S+ L G+ D+ ++W+ + + V ++ SP
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 330
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 45/157 (28%)
Query: 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKE 187
P + G + QG + W P +++ G D +RIW+ +G L D
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 188 T----------------------------------------GHKKTITSLAKAADGSHFL 207
+ GH + SL + DG+
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244
+ + D++ +LW R EL ER + S L+
Sbjct: 381 SAAADETLRLW--RCFELDPARRREREKASAAKSSLI 415
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
+ GH + + L++ DG L S D+ VW + GE L T+ H GAV WC
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
S + + G++D+ ++WNV +GA L + S S+ ++ K +I+ F +
Sbjct: 297 PWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQ 354
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
N + I + P V LKG R+ P T+ SA D +R+W
Sbjct: 355 -NQLV----IWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 86/224 (38%), Gaps = 17/224 (7%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
+ + A D++ +W A +G+ L + + V+ ++ L G++ +LW+V+
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
+L S ++ ++ + ++ L+S I V L
Sbjct: 189 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
G + W P R + S G D +V +W + G+ T H+ + ++A
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
S+ L G+ D+ ++W+ + + V ++ SP
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 341
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
E V+ L+G R+ W P + ++ SAG D ++ +WD TG + + H TI
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
S+ + DG+ T DK ++ + R ++ + + RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 121 AIHVKRIARDPADQGGESVLILK-GPQGRINRAV--------------WGPLNRTIISAG 165
A++ K +A GG + L+L G GR+++ V W P N +I++G
Sbjct: 41 AVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASG 100
Query: 166 -EDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSH-FLTGSLDKSAKLWD 219
ED V +W+ G L+ + GH K + +A + L+ D +WD
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 220 ART 222
T
Sbjct: 161 VGT 163
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVW 56
L+ GH P+ + + D ++ S ++D T VW +G E + T GH V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 57 CCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD 93
+ L++ D +W+V TGA + T D
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPD 173
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 110/261 (42%), Gaps = 22/261 (8%)
Query: 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-FADNGERLGTYR----GHNGAVWCCD 59
M+ H +T + D D++ S ++D + +W + + G + GH+ V
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFME 117
+S D ++GS D +LW++ G F SV F++ ++ V + D ++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWDT 175
L + + + +GGE G + ++ + P L TI+SA D V++W+
Sbjct: 498 LWNTLGECKYT---ISEGGE------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV 235
KL GH ++++A + DGS +G D LWD + + + +
Sbjct: 549 SNCKL---RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI 605
Query: 236 NAVTMSPLLDHVCIGEPQTIK 256
+A+ SP +C IK
Sbjct: 606 HALCFSPNRYWLCAATEHGIK 626
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84
+ S + D T VW N + T GH G V VS D +G D LW++ G
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 85 AQLFTFNFDSPARSVDFAVGDKLAVITTD---PFMELNSAIHVKRIARD---PADQGGES 138
+L++ +S ++ F+ T+ +L S V+ + D A++ S
Sbjct: 594 KKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653
Query: 139 VLILKGPQGRINRAV------WGPLNRTIISAGEDAIVRIW 173
GP + + W T+ S D ++R+W
Sbjct: 654 -----GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-------GHNGAVWCCDVS 61
H + + ++YN DG L S D T ++ +G + G + H+G+V+ S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 62 RDSMTLITGSADQTAKLWNVET 83
D + + SAD+T K+WNV T
Sbjct: 249 PDGTKIASASADKTIKIWNVAT 270
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 154 WGPLNRTIISAGEDAIVRIWD----TETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209
+ P S G D + +++ T+TG +S K H ++ L + DG+ +
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 210 SLDKSAKLWDARTLELIKT 228
S DK+ K+W+ TL++ KT
Sbjct: 258 SADKTIKIWNVATLKVEKT 276
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 59/172 (34%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG---TYRGHNGAVWCCDVSRDSM 65
H +T + ++ +G L + + + N L ++ H V C S D++
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L TGS D + +WN+
Sbjct: 550 RLATGSLDNSVIVWNM-------------------------------------------- 565
Query: 126 RIARDPADQGGESVLILKGPQG--RINRAVWGPLNR-TIISAGEDAIVRIWD 174
P+D +I+KG +N +W LN TI+SAG+D+ ++ W+
Sbjct: 566 ---NKPSDHP----IIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWN 608
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
E V+ L+G R+ W P + ++ SAG D ++ +WD TG + + H TI
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
S+ + DG+ T DK ++ + R ++ + + RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 121 AIHVKRIARDPADQGGESVLILK-GPQGRINRAV--------------WGPLNRTIISAG 165
A++ K +A GG + L+L G GR+++ V W P N +I++G
Sbjct: 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG 100
Query: 166 -EDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSH-FLTGSLDKSAKLWD 219
ED V +W+ G L+ + GH K + +A + L+ D +WD
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Query: 220 ART 222
T
Sbjct: 161 VGT 163
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVW 56
L+ GH P+ + + D ++ S ++D T VW +G E + T GH V
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 57 CCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD 93
+ L++ D +W+V TGA + T D
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204
P R W P + S G D +RIW TE + +S GH++T+ +A + G+
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN 74
Query: 205 HFLTGSLDKSAKLW--DARTLELIKTYVT-ERPVNAVTMSP 242
+ + S D + +W + E + T E V +V +P
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 17/211 (8%)
Query: 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGS 71
+L +N G LL SC D +W + + GH V S L + S
Sbjct: 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 72 ADQTAKLW--NVETGAQLFTFN-FDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRI 127
D T +W N + + T ++ +SV +A G+ LA + D ++ V +
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD------KSVWVWEV 134
Query: 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE 187
D D+ E V +L + VW P + SA D V+++ E + + E
Sbjct: 135 --DEEDEY-ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
GH+ T+ SLA G + S D++ ++W
Sbjct: 192 -GHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
++ +G Q + + W P + SA DA IW + E GH+ + S+A
Sbjct: 55 VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAW 113
Query: 200 AADGSHFLTGSLDKSAKLWD 219
A G+ T S DKS +W+
Sbjct: 114 APSGNLLATCSRDKSVWVWE 133
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 11/178 (6%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSR 62
++GHE + + + G+LL +C++D + VW D E + H V
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 63 DSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDF-AVGDKLAVITTDPFMEL 118
L + S D T KL+ E + +S S+ F G +LA + D + +
Sbjct: 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Query: 119 NSAI---HVKRIARDPADQGGESVLILKGPQGR-INRAVWGPLNRTIISAGEDAIVRI 172
+ + +A +D + + L G R I W L + +A D +R+
Sbjct: 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDK---LAVITTDPFMEL 118
D+ + S D+T K+W+ T FNF+ S + V K +AV T P ++L
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE- 176
+ G IL+G + I W P I+ +A D+ V++WD
Sbjct: 171 CDL------------KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 177 -TGKLL-------KESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
+G L+ K+S T H + L +DG H LT D +LW++ E
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 27/145 (18%)
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175
+ELN V+RI GG + L ++ +GR ++S G D ++ ++D
Sbjct: 30 LELNKDRDVERI-----HGGGINTLDIEPVEGRY-----------MLSGGSDGVIVLYDL 73
Query: 176 ETGKLLKE----------SDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWDARTLE 224
E D H+ ++ ++ D F + S DK+ K+WD TL+
Sbjct: 74 ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133
Query: 225 LIKTYVTERPVNAVTMSPLLDHVCI 249
+ E V + MSP+ C+
Sbjct: 134 TADVFNFEETVYSHHMSPVSTKHCL 158
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPARSVDFAVGDK 106
HNG V + D + L+T D +LWN G N+ ++ + + F V
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV-NYGKVCNNSKKGLKFTV--S 300
Query: 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166
+ F+ S I V + GE + +LKG ++ V+ + + S
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTV------YSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354
Query: 167 DAIVRIW 173
D + W
Sbjct: 355 DCNILAW 361
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
+ H +T LK+ G+ L S ++D +W +G T GH V +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 67 LITGSADQTAKLWNVETGAQLFTFN 91
+++ S D T +LW TG + TFN
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
I + + P +IS+ +D ++IW + G S+ T GH+ T+T +A G +
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 192
Query: 206 FLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLL 244
L+ SLD + +LW+ T I T+ E P + V L
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 232
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
+ H +T LK+ G+ L S ++D +W +G T GH V +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 67 LITGSADQTAKLWNVETGAQLFTFN 91
+++ S D T +LW TG + TFN
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
I + + P +IS+ +D ++IW + G S+ T GH+ T+T +A G +
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 195
Query: 206 FLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLL 244
L+ SLD + +LW+ T I T+ E P + V L
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
M GH+ + L +N+ +L S ++ H V A++ ++GT +GH+ V
Sbjct: 172 MAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRS 227
Query: 63 DSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
D + L +G D ++W+ + FT N ++ ++V + + T M+
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD---- 283
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGK 179
K+I A G + G Q + +W P ++ I+S D + IW +
Sbjct: 284 ---KQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTERPVNA 237
L K+ D H + A + DG T + D++ K W + +K +T+ P ++
Sbjct: 339 LTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
Query: 238 VTM 240
+T+
Sbjct: 398 ITI 400
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAK 199
L+G + W + S G D +V+IWD + K K T H + ++A
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-----TNHNAAVKAVAW 267
Query: 200 AADGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
S+ L G++DK W+A T + T V ++ SP
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH P++ L++N LL S + D T +W NG + GH+ ++ D +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV 303
Query: 68 ITGSADQTAKLWNVETGAQL 87
I+ S D + +LW+++ L
Sbjct: 304 ISCSMDGSVRLWSLKQNTLL 323
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 53/225 (23%)
Query: 55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTD 113
V C S D +++TG + +LWN +TGA L NF +P SV + D +I+ D
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMD 168
Query: 114 ----------------PFMELNSAIHVKRIARDPADQGGESV---------LILKGPQGR 148
EL A + + G V ++ GP+G
Sbjct: 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA 228
Query: 149 I-----------NRAVW--GPL--------NRTIISAGEDAIVRIWDTETGKLLKESDKE 187
I + + GP+ N+ ++SA +D +RIW G +
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---NSQNCF 285
Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
GH ++I S + D ++ S+D S +LW + L+ + +
Sbjct: 286 YGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLLALSIVD 329
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH+ + + + + S + D +W +NG+++ + W S DS
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNS 120
L TG+ ++ VE+G + ++ + S A S D G LA D
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD---GKYLASGAIDGI----- 187
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
I++ IA G+ + L+G I + P ++ +++A +D ++I+D + L
Sbjct: 188 -INIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
+ +GH + ++A D +HF++ S DKS K+WD T + T+
Sbjct: 241 ---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVW--FADNGERLGTYRGHNGAVWCCDVSR 62
+++ H + + ++ ++ LL S + D T +W + D+ E + GH G VW D +
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK 207
Query: 63 DS--MTLITGSADQTAKLW 79
L +GS D T ++W
Sbjct: 208 TEGVFRLCSGSDDSTVRVW 226
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 28/192 (14%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDV 60
+++GHE + + ++ DG L +C++D + +W D E + + H+ V
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTD-----PF 115
L + S D T ++W ++D V G + V ++D
Sbjct: 162 HPSEALLASSSYDDTVRIWK----------DYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211
Query: 116 MEL-----NSAIHVKRIARDPADQGGESVL--ILKGPQGR-INRAVWGPLNRTIISAGED 167
L +S + V + D D E V IL R + WG N I S G D
Sbjct: 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-FNGLIASVGAD 270
Query: 168 AIVRIWDTETGK 179
++ +++ G+
Sbjct: 271 GVLAVYEEVDGE 282
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 18/162 (11%)
Query: 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126
L GS D T +W E A TF D A K + D + L + K
Sbjct: 73 LAAGSFDSTVSIWAKEESADR-TFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKS 130
Query: 127 IARDPADQGGES---VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW-----DTETG 178
+ D+ GE + +L+ + +W P + S+ D VRIW D E
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190
Query: 179 KLLKESDKETGHKKTITS--LAKAADGSHFLTGSLDKSAKLW 218
+L GH+ T+ S K +GS D + ++W
Sbjct: 191 AVL------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 149 INRAVWGPLNRTIISAGEDAIVRIW-DTETGKLLKESDKET---GHKKTITSLAKAADGS 204
I W P + + D+ V IW E+ E D GH+ + +A + DG
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 205 HFLTGSLDKSAKLWD 219
+ T S DKS +W+
Sbjct: 121 YLATCSRDKSVWIWE 135
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 21/179 (11%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDV 60
H++ + + + LL + + D T ++W + + L GH V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
S D L T S D++ +W + + + S D + ++ + +S
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK---HVIWHPSEALLASSS 172
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRT-----IISAGEDAIVRIW 173
RI +D D E V +L G +G VW ++T + S +D+ VR+W
Sbjct: 173 YDDTVRIWKDY-DDDWECVAVLNGHEG----TVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 170 VRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
VR W+ + +G+ + ++ + H + + + DGS T S DK+AK+WD + + I+
Sbjct: 66 VRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI 123
Query: 229 YVTERPVNAVTMSPLLDHVCI 249
+ PV + ++ C+
Sbjct: 124 AQHDAPVKTIHWIKAPNYSCV 144
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206
G + W + +A D ++WD + + ++ + + KTI + KA + S
Sbjct: 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD-APVKTIHWI-KAPNYSCV 144
Query: 207 LTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSPL 243
+TGS DK+ K WD R+ ++ + ER A + P+
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
H G V S D + T S D+TAK+W++ + + D+P +++ + + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144
Query: 111 TT 112
T
Sbjct: 145 MT 146
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV----WCC 58
P + H P+ + ++ DG +F+ + D T +W + + + + H+ V W
Sbjct: 79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWI- 136
Query: 59 DVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---- 114
+ + ++TGS D+T K W+ + + P R V +AV+ T
Sbjct: 137 -KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--PERCYCADVIYPMAVVATAERGLI 193
Query: 115 -FMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148
+ N +RI P V I K Q +
Sbjct: 194 VYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNK 227
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL 225
L TGS DK+ LWD R L+L
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKL 312
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
Query: 24 LLFSCAKDHTPTVWFADNGERLG---TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79
L S A D +W N T H V C + S L TGSAD+T LW
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 80 NVETGAQLFTFNFDSPARSVDFAVG------DKLAVITTDPFMEL--NSAIHVKRIARDP 131
++ +L +F+S + F V LA TD + + S I ++ D
Sbjct: 306 DLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 173
D E + I G +I+ W P II S ED I+++W
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL 225
L TGS DK+ LWD R L+L
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKL 314
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 24 LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79
L S A D +W N + T H V C + S L TGSAD+T LW
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 80 NVETGAQLFTFNFDSPARSVDFAVG------DKLAVITTDPFMEL--NSAIHVKRIARDP 131
++ +L +F+S + F V LA TD + + S I ++ D
Sbjct: 308 DLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 173
D E + I G +I+ W P II S ED I+++W
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL 225
L TGS DK+ LWD R L+L
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKL 316
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 24 LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79
L S A D +W N + T H V C + S L TGSAD+T LW
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 80 NVETGAQLFTFNFDSPARSVDFAVG------DKLAVITTDPFMEL--NSAIHVKRIARDP 131
++ +L +F+S + F V LA TD + + S I ++ D
Sbjct: 310 DLRN-LKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 173
D E + I G +I+ W P II S ED I+++W
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL 225
L TGS DK+ LWD R L+L
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKL 308
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Query: 24 LLFSCAKDHTPTVW--FADNGERLG-TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79
L S A D +W ++N + + H V C + S L TGSAD+T LW
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 80 NVETGAQLFTFNFDSPAR---SVDFAVGDKLAVITTDPFMELN----SAIHVKRIARDPA 132
++ +L +F+S V ++ ++ + ++ LN S I ++ D
Sbjct: 302 DLRN-LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 173
D E + I G +I+ W P +I S ED I+++W
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 136 GESVLILKGPQGRINRAVWGPLNRT--------------IISAGEDAIVRIWDT-ETGKL 180
G S+ + K P+G N ++ +T I+ A + V +W+ E L
Sbjct: 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL 128
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT 239
L + H + +L+ +DG+ ++G D S K+WD ++K+Y VN V
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 240 MSPLLDHV 247
P D +
Sbjct: 189 ACPGKDTI 196
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL 225
L TGS DK+ LWD R L+L
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKL 310
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 50 GHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET-GAQLFTF-NFDSPARSVDFAVGDK 106
H V C + S L TGSAD+T LW++ +L TF + V ++ ++
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 107 LAVITTDPFMELN----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162
+ ++ LN S I ++ A D D E + I G +I+ W P +I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 163 -SAGEDAIVRIW 173
S ED I++IW
Sbjct: 393 CSVSEDNIMQIW 404
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 20/199 (10%)
Query: 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLG-------TYRGHNGAV 55
+ ++GH++ L +N + L S + DHT +W + G + G + GH+ V
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 56 WCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP 114
+L A DQ +W+ + P+ VD + + ++ +P
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTT------SKPSHLVDAHTAE-VNCLSFNP 285
Query: 115 FME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVR 171
+ E L + K +A + + + I + W P N TI+ S+G D +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 172 IWD-TETGKLLKESDKETG 189
+WD ++ G+ D E G
Sbjct: 346 VWDLSKIGEEQSAEDAEDG 364
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL 225
L TGS DK+ LWD R L+L
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKL 310
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 50 GHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET-GAQLFTF-NFDSPARSVDFAVGDK 106
H V C + S L TGSAD+T LW++ +L TF + V ++ ++
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 107 LAVITTDPFMELN----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162
+ ++ LN S I ++ A D D E + I G +I+ W P +I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 163 -SAGEDAIVRIW 173
S ED I +IW
Sbjct: 393 CSVSEDNIXQIW 404
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 20/199 (10%)
Query: 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGT-------YRGHNGAV 55
+ ++GH++ L +N + L S + DHT +W + G + G + GH+ V
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 56 WCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP 114
+L A DQ +W+ + P+ VD + + ++ +P
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTT------SKPSHLVDAHTAE-VNCLSFNP 285
Query: 115 FME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVR 171
+ E L + K +A + + + I + W P N TI+ S+G D +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 172 IWD-TETGKLLKESDKETG 189
+WD ++ G+ D E G
Sbjct: 346 VWDLSKIGEEQSAEDAEDG 364
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 34/254 (13%)
Query: 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLI 68
P++ +NKD + C +H ++ + + + + HNG V D + DS ++
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 69 TGSADQTAKLWNVET---GAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMEL 118
T D+ A +W ++ L + AR V FAVG VI+ F +
Sbjct: 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 128
Query: 119 NS---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAI 169
N H+K+ R D SVL+ G + RI A I E
Sbjct: 129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPA 181
Query: 170 VRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
W ++ G+L+ ES G + + +A+GS S D + L DA +
Sbjct: 182 PTPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238
Query: 228 TYVTER-PVNAVTM 240
T +E P+ AVT
Sbjct: 239 TLASETLPLLAVTF 252
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 34/254 (13%)
Query: 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLI 68
P++ +NKD + C +H ++ + + + + HNG V D + DS ++
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 69 TGSADQTAKLWNVET---GAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMEL 118
T D+ A +W ++ L + AR V FAVG VI+ F +
Sbjct: 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 128
Query: 119 NS---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAI 169
N H+K+ R D SVL+ G + RI A I E
Sbjct: 129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPA 181
Query: 170 VRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
W ++ G+L+ ES G + + +A+GS S D + L DA +
Sbjct: 182 PTPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238
Query: 228 TYVTER-PVNAVTM 240
T +E P+ AVT
Sbjct: 239 TLASETLPLLAVTF 252
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK- 77
G L +C+ D T + F GE + T GH G VW D + I S K
Sbjct: 21 GKRLATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 78 -LWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 190 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK- 77
G L +C+ D T + F GE + T GH G VW D + I S K
Sbjct: 23 GKRLATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81
Query: 78 -LWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV---SVVEFK----- 133
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 134 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 192 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK- 77
G L +C+ D T + F GE + T GH G VW D + I S K
Sbjct: 21 GKRLATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 78 -LWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 190 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPT-VWFADNGERLGTYR 49
+L+K H P+ ++ N+ GD++ +C++D T V+ DNG + +R
Sbjct: 173 VLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFR 219
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTA 76
G + +C+ D T + F GE + T GH G VW D + I S D
Sbjct: 21 GKRMATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 77 KLWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 190 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERL---GTYRG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + G G
Sbjct: 95 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 154
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83
H V D +++ D + KLW + +
Sbjct: 155 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 186 NSKRMMNAIKESYDYNP 202
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERL---GTYRG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + G G
Sbjct: 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83
H V D +++ D + KLW + +
Sbjct: 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 191 NSKRMMNAIKESYDYNP 207
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERL---GTYRG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + G G
Sbjct: 136 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 195
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83
H V D +++ D + KLW + +
Sbjct: 196 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 227 NSKRMMNAIKESYDYNP 243
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERL---GTYRG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + G G
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83
H V D +++ D + KLW + +
Sbjct: 159 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 190 NSKRMMNAIKESYDYNP 206
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERL---GTYRG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + G G
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83
H V D +++ D + KLW + +
Sbjct: 159 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 190 NSKRMMNAIKESYDYNP 206
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 35/176 (19%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTA 76
G +C+ D T + F GE + T GH G VW D + I S D
Sbjct: 21 GKRXATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 77 KLWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 XIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW 173
+ G S +I+ +N A W P +R ++ G D +V+IW
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 190 HKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLE----LIKTYVTERPVNAVTMSP 242
HKK +T +A FL T S+D++ K+WD R + + + PVNA SP
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 190 HKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLE----LIKTYVTERPVNAVTMSP 242
HKK +T +A FL T S+D++ K+WD R + + + PVNA SP
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 190 HKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLE----LIKTYVTERPVNAVTMSP 242
HKK +T +A FL T S+D++ K+WD R + + + PVNA SP
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 307
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 208 TGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSP 242
T S+D + KLWD R ++ +Y+ E+PVNA +P
Sbjct: 222 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 208 TGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSP 242
T S+D + KLWD R ++ +Y+ E+PVNA +P
Sbjct: 221 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 6 MKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAV 55
++GHE P+ + + G++L SC+ D +W +NG E+ + GH+ +V
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV 106
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
+F+ AK+H P + F D + +G R G ++ R M L+T
Sbjct: 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 19/147 (12%)
Query: 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR----DPADQGGE--SVL 140
LF + R++D A L +T F+ + V I + D QG E +L
Sbjct: 174 LFRADHKEAVRTIDNADSSTLHAVT---FLRTPEILTVNSIGQLKIWDFRQQGNEPSQIL 230
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETG----KLLKESDKETGHKKTIT 195
L G + ++ P + ++ + G+D ++ IWD G LLK + E
Sbjct: 231 SLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVH--- 287
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDART 222
++ H T S D S WDA T
Sbjct: 288 --FHPSNPEHLFTCSEDGSLWHWDAST 312
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAK 216
R I+ A + V +W+ + + L S + H +++++ + G+ ++GS D K
Sbjct: 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152
Query: 217 LWDARTLELIKTYVTERP-VNAVTMSPLLDHV 247
+WD ++ +Y V V SP D V
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 5 LMKGHERPLTYLKY-NKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWC 57
L +GH++ + L + ++D LL S +D+T +W ++ E+L + RG+ WC
Sbjct: 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN----WC 308
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 49 RGHNGAV----WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR 97
+GH + WC +D L++ D T LWN E+ QL F PAR
Sbjct: 259 QGHQKGILSLDWC---HQDEHLLLSSGRDNTVLLWNPESAEQLSQF----PAR 304
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 163 SAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
+ G DA +R+WD T K +++ DK+ + + +A ++ SLD + ++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL 326
Query: 221 RTLELIKTYVT-ERPVNAVTMSPLL 244
E++KT + + A+T++PL+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 163 SAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
+ G DA +R+WD T K +++ DK+ + + +A ++ SLD + ++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL 326
Query: 221 RTLELIKTYVT-ERPVNAVTMSPLL 244
E++KT + + A+T++PL+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHT 33
+ +L+K H P+ ++ N+ D++ +C++D T
Sbjct: 187 KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,872,472
Number of Sequences: 62578
Number of extensions: 346006
Number of successful extensions: 1799
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 521
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)