Query 021925
Match_columns 305
No_of_seqs 618 out of 1802
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 06:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.9E-46 1.5E-50 278.7 21.7 281 5-302 110-478 (480)
2 KOG0643 Translation initiation 100.0 5.2E-44 1.1E-48 256.7 27.9 277 1-279 1-278 (327)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-45 5.2E-50 278.7 18.3 243 4-265 211-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 5.3E-44 1.1E-48 268.6 21.0 249 4-255 151-474 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-44 1.3E-48 271.1 19.2 255 8-281 173-432 (459)
6 KOG0279 G protein beta subunit 100.0 8.7E-41 1.9E-45 241.4 28.8 253 5-278 10-273 (315)
7 KOG0286 G-protein beta subunit 100.0 9.3E-40 2E-44 237.6 26.9 257 4-280 49-316 (343)
8 KOG0279 G protein beta subunit 100.0 2.1E-39 4.6E-44 234.2 26.0 239 5-259 58-310 (315)
9 KOG0273 Beta-transducin family 100.0 1.5E-39 3.2E-44 250.6 25.8 241 11-272 236-487 (524)
10 KOG0263 Transcription initiati 100.0 2.7E-40 5.8E-45 269.3 22.4 244 6-268 374-650 (707)
11 KOG0315 G-protein beta subunit 100.0 2.5E-38 5.5E-43 225.3 24.0 229 4-241 77-309 (311)
12 KOG0263 Transcription initiati 100.0 1.9E-38 4E-43 258.6 24.6 205 4-222 445-650 (707)
13 KOG0315 G-protein beta subunit 100.0 1.1E-36 2.3E-41 217.0 25.5 251 5-271 35-292 (311)
14 KOG0286 G-protein beta subunit 100.0 6.9E-36 1.5E-40 217.5 27.6 238 9-264 96-342 (343)
15 KOG0295 WD40 repeat-containing 100.0 2.8E-37 6.2E-42 230.9 20.0 237 5-255 145-399 (406)
16 KOG0291 WD40-repeat-containing 100.0 2.4E-36 5.3E-41 245.2 26.9 242 5-260 345-610 (893)
17 KOG0284 Polyadenylation factor 100.0 1.8E-38 3.9E-43 240.6 13.4 241 5-260 133-378 (464)
18 KOG0296 Angio-associated migra 100.0 2.7E-35 5.9E-40 220.4 29.4 244 4-259 58-395 (399)
19 KOG1407 WD40 repeat protein [F 100.0 3E-36 6.4E-41 216.1 21.3 248 4-254 14-294 (313)
20 KOG0285 Pleiotropic regulator 100.0 3.1E-36 6.7E-41 225.2 21.3 236 5-256 146-383 (460)
21 KOG0282 mRNA splicing factor [ 100.0 4.2E-37 9.1E-42 237.8 15.9 245 4-264 208-502 (503)
22 KOG0645 WD40 repeat protein [G 100.0 2.4E-34 5.1E-39 207.4 28.2 241 3-259 7-258 (312)
23 KOG0273 Beta-transducin family 100.0 5.7E-35 1.2E-39 225.4 26.4 242 5-261 271-522 (524)
24 KOG0284 Polyadenylation factor 100.0 3.5E-37 7.7E-42 233.6 13.5 240 9-262 95-337 (464)
25 KOG0318 WD40 repeat stress pro 100.0 1.9E-34 4.1E-39 225.5 28.6 248 5-265 185-563 (603)
26 KOG0265 U5 snRNP-specific prot 100.0 3.7E-35 8.1E-40 214.4 21.9 251 5-274 42-303 (338)
27 KOG0316 Conserved WD40 repeat- 100.0 6.2E-35 1.3E-39 206.5 21.4 248 4-272 11-262 (307)
28 KOG0266 WD40 repeat-containing 100.0 1.8E-34 4E-39 239.4 26.8 235 5-251 198-441 (456)
29 KOG0295 WD40 repeat-containing 100.0 1.8E-35 4E-40 221.2 18.5 246 5-269 103-366 (406)
30 KOG0266 WD40 repeat-containing 100.0 5.5E-34 1.2E-38 236.5 29.4 256 6-278 154-420 (456)
31 KOG0319 WD40-repeat-containing 100.0 1.1E-34 2.3E-39 235.1 22.7 244 2-259 357-616 (775)
32 cd00200 WD40 WD40 domain, foun 100.0 4.2E-33 9E-38 220.1 30.9 237 5-255 4-242 (289)
33 KOG0265 U5 snRNP-specific prot 100.0 2.6E-34 5.6E-39 210.0 21.3 240 5-256 85-332 (338)
34 KOG0276 Vesicle coat complex C 100.0 1.2E-34 2.6E-39 231.0 21.0 255 5-277 8-267 (794)
35 KOG0645 WD40 repeat protein [G 100.0 4.5E-33 9.7E-38 200.8 25.8 236 4-256 55-305 (312)
36 KOG0292 Vesicle coat complex C 100.0 8.4E-34 1.8E-38 234.4 25.0 249 6-260 47-320 (1202)
37 KOG0283 WD40 repeat-containing 100.0 5E-34 1.1E-38 234.6 22.3 243 6-266 262-575 (712)
38 cd00200 WD40 WD40 domain, foun 100.0 2.7E-32 5.7E-37 215.5 31.6 237 5-255 46-284 (289)
39 KOG0291 WD40-repeat-containing 100.0 1.3E-32 2.7E-37 223.8 27.6 238 9-260 306-548 (893)
40 KOG0306 WD40-repeat-containing 100.0 3.6E-33 7.9E-38 226.8 24.0 248 4-271 367-668 (888)
41 KOG0293 WD40 repeat-containing 100.0 1.1E-33 2.5E-38 215.1 18.7 252 5-267 219-513 (519)
42 PLN00181 protein SPA1-RELATED; 100.0 7.3E-32 1.6E-36 239.5 33.2 234 9-256 531-787 (793)
43 KOG0275 Conserved WD40 repeat- 100.0 2E-34 4.3E-39 213.5 12.6 242 8-265 211-507 (508)
44 PTZ00421 coronin; Provisional 100.0 3.3E-31 7.2E-36 219.3 31.1 228 4-244 69-315 (493)
45 KOG0276 Vesicle coat complex C 100.0 1.7E-32 3.7E-37 218.8 21.4 237 7-257 52-294 (794)
46 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-30 2.3E-35 192.6 27.9 245 1-252 4-295 (311)
47 KOG2096 WD40 repeat protein [G 100.0 2.9E-31 6.3E-36 195.9 23.6 260 5-271 81-412 (420)
48 PLN00181 protein SPA1-RELATED; 100.0 1.5E-30 3.2E-35 231.1 32.5 236 6-258 479-734 (793)
49 KOG0278 Serine/threonine kinas 100.0 5.5E-33 1.2E-37 198.4 13.3 251 3-268 7-298 (334)
50 KOG0640 mRNA cleavage stimulat 100.0 7.9E-32 1.7E-36 198.3 19.4 218 4-230 106-344 (430)
51 KOG0319 WD40-repeat-containing 100.0 7.3E-31 1.6E-35 213.0 25.4 263 6-283 319-593 (775)
52 PTZ00420 coronin; Provisional 100.0 6E-30 1.3E-34 212.9 31.1 229 5-245 69-319 (568)
53 KOG0318 WD40 repeat stress pro 100.0 4.7E-30 1E-34 201.0 26.4 244 5-259 54-347 (603)
54 KOG0281 Beta-TrCP (transducin 100.0 8.3E-33 1.8E-37 206.4 9.1 232 9-268 196-429 (499)
55 KOG0292 Vesicle coat complex C 100.0 5E-31 1.1E-35 218.2 19.5 251 6-272 5-285 (1202)
56 KOG0281 Beta-TrCP (transducin 100.0 4.5E-32 9.8E-37 202.5 12.1 232 5-267 232-477 (499)
57 KOG0268 Sof1-like rRNA process 100.0 1.9E-31 4.1E-36 199.9 14.9 244 2-266 56-344 (433)
58 KOG0772 Uncharacterized conser 100.0 3.1E-30 6.6E-35 201.7 22.0 247 3-258 160-483 (641)
59 KOG0305 Anaphase promoting com 100.0 5.4E-30 1.2E-34 205.4 23.8 238 9-268 216-462 (484)
60 KOG0310 Conserved WD40 repeat- 100.0 5.8E-30 1.3E-34 198.7 23.0 239 6-257 64-304 (487)
61 KOG0973 Histone transcription 100.0 5.5E-30 1.2E-34 216.3 23.4 243 6-262 65-355 (942)
62 KOG0285 Pleiotropic regulator 100.0 6.3E-30 1.4E-34 191.6 21.0 242 4-266 187-438 (460)
63 KOG0278 Serine/threonine kinas 100.0 1E-30 2.2E-35 186.9 15.8 204 8-226 98-302 (334)
64 KOG0288 WD40 repeat protein Ti 100.0 2.8E-30 6E-35 196.6 18.6 237 5-255 214-454 (459)
65 PTZ00421 coronin; Provisional 100.0 9.9E-29 2.1E-33 204.7 29.4 244 8-270 18-293 (493)
66 KOG0289 mRNA splicing factor [ 100.0 8.4E-30 1.8E-34 195.2 21.2 229 11-253 220-453 (506)
67 KOG0299 U3 snoRNP-associated p 100.0 1.6E-29 3.5E-34 194.9 21.8 237 7-256 199-449 (479)
68 KOG0316 Conserved WD40 repeat- 100.0 3.3E-29 7.1E-34 177.7 21.2 233 5-255 54-293 (307)
69 KOG0277 Peroxisomal targeting 100.0 6.5E-30 1.4E-34 183.1 17.1 237 10-265 60-307 (311)
70 KOG0289 mRNA splicing factor [ 100.0 6.4E-29 1.4E-33 190.4 23.7 238 5-255 256-499 (506)
71 KOG0306 WD40-repeat-containing 100.0 4.9E-29 1.1E-33 203.0 24.3 293 3-300 100-617 (888)
72 KOG1332 Vesicle coat complex C 100.0 5.9E-30 1.3E-34 182.3 16.2 248 5-268 6-287 (299)
73 KOG0308 Conserved WD40 repeat- 100.0 7.2E-30 1.6E-34 204.6 17.7 249 8-264 19-287 (735)
74 KOG0313 Microtubule binding pr 100.0 5.6E-29 1.2E-33 187.6 21.0 253 8-278 103-388 (423)
75 KOG0282 mRNA splicing factor [ 100.0 1.7E-30 3.6E-35 201.5 13.2 206 5-219 253-503 (503)
76 KOG0641 WD40 repeat protein [G 100.0 1.6E-27 3.4E-32 168.5 26.4 245 3-258 25-299 (350)
77 KOG0274 Cdc4 and related F-box 100.0 1.2E-28 2.5E-33 204.6 24.2 242 6-275 245-490 (537)
78 KOG0294 WD40 repeat-containing 100.0 1.7E-28 3.6E-33 181.0 22.1 240 5-269 38-283 (362)
79 KOG0643 Translation initiation 100.0 6.2E-29 1.3E-33 179.3 19.3 238 5-257 47-312 (327)
80 KOG1273 WD40 repeat protein [G 100.0 3.3E-29 7.2E-34 184.8 17.7 249 13-279 26-292 (405)
81 PTZ00420 coronin; Provisional 100.0 3.5E-27 7.5E-32 196.6 31.0 217 28-259 50-290 (568)
82 KOG0293 WD40 repeat-containing 100.0 2.5E-29 5.4E-34 191.6 14.8 208 5-222 264-514 (519)
83 KOG4283 Transcription-coupled 100.0 3E-28 6.5E-33 178.3 19.7 208 6-224 39-279 (397)
84 KOG0647 mRNA export protein (c 100.0 4.6E-28 1E-32 177.6 20.2 238 3-252 65-313 (347)
85 KOG0973 Histone transcription 100.0 1.2E-28 2.5E-33 208.3 19.2 213 2-251 5-238 (942)
86 KOG0283 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 203.1 18.0 208 5-222 364-577 (712)
87 KOG0313 Microtubule binding pr 100.0 2.1E-27 4.6E-32 179.2 23.0 237 5-255 139-411 (423)
88 KOG0300 WD40 repeat-containing 100.0 3.2E-28 6.9E-33 180.2 17.0 245 5-268 143-429 (481)
89 KOG0310 Conserved WD40 repeat- 100.0 2.7E-27 5.9E-32 183.9 22.1 202 5-221 105-309 (487)
90 KOG0264 Nucleosome remodeling 100.0 1.6E-27 3.6E-32 183.6 20.3 245 7-267 121-404 (422)
91 KOG0296 Angio-associated migra 100.0 1.4E-26 3.1E-31 173.9 23.7 210 3-221 99-398 (399)
92 KOG1274 WD40 repeat protein [G 100.0 1.5E-26 3.2E-31 192.5 26.0 243 7-262 10-262 (933)
93 KOG0308 Conserved WD40 repeat- 100.0 5.8E-28 1.3E-32 193.8 16.1 247 5-270 68-330 (735)
94 KOG0277 Peroxisomal targeting 100.0 7.1E-28 1.5E-32 172.7 14.8 204 5-220 99-308 (311)
95 KOG1408 WD40 repeat protein [F 100.0 1.7E-27 3.6E-32 193.5 18.3 247 8-261 457-712 (1080)
96 KOG0299 U3 snoRNP-associated p 100.0 4.6E-27 1E-31 181.4 19.8 247 4-271 136-414 (479)
97 KOG0294 WD40 repeat-containing 100.0 2.2E-26 4.8E-31 169.8 21.5 220 5-241 78-306 (362)
98 KOG0274 Cdc4 and related F-box 100.0 1.3E-26 2.8E-31 192.5 22.8 241 9-277 207-451 (537)
99 KOG0269 WD40 repeat-containing 100.0 6.3E-28 1.4E-32 197.1 14.5 229 13-255 90-333 (839)
100 KOG0267 Microtubule severing p 100.0 1.3E-28 2.8E-33 199.7 10.0 237 6-256 24-262 (825)
101 KOG0288 WD40 repeat protein Ti 100.0 6.4E-28 1.4E-32 183.8 12.5 248 5-275 170-425 (459)
102 KOG1539 WD repeat protein [Gen 100.0 3.5E-25 7.5E-30 182.7 29.1 241 5-256 197-641 (910)
103 KOG0305 Anaphase promoting com 100.0 2.3E-26 5.1E-31 184.7 21.4 219 16-251 183-406 (484)
104 KOG0641 WD40 repeat protein [G 100.0 4.3E-25 9.4E-30 156.2 24.7 241 6-255 85-342 (350)
105 KOG2445 Nuclear pore complex c 100.0 3.8E-25 8.3E-30 162.9 25.2 257 6-273 9-324 (361)
106 KOG1036 Mitotic spindle checkp 100.0 2.9E-25 6.3E-30 163.5 24.1 249 8-278 11-273 (323)
107 KOG0646 WD40 repeat protein [G 99.9 1.4E-25 3.1E-30 173.5 21.3 206 10-262 81-307 (476)
108 KOG0300 WD40 repeat-containing 99.9 8E-26 1.7E-30 167.5 18.3 242 5-261 185-475 (481)
109 KOG2048 WD40 repeat protein [G 99.9 1.4E-24 3E-29 175.3 26.6 244 6-260 21-273 (691)
110 KOG0647 mRNA export protein (c 99.9 9.9E-25 2.2E-29 160.3 23.2 243 8-271 25-285 (347)
111 KOG0275 Conserved WD40 repeat- 99.9 5.2E-27 1.1E-31 174.3 10.9 199 50-262 211-423 (508)
112 KOG0639 Transducin-like enhanc 99.9 3.6E-26 7.8E-31 178.8 15.6 249 5-274 414-670 (705)
113 KOG0640 mRNA cleavage stimulat 99.9 3.3E-26 7.2E-31 168.9 14.6 214 45-272 105-340 (430)
114 KOG0302 Ribosome Assembly prot 99.9 1.6E-25 3.6E-30 169.0 18.3 208 1-261 201-438 (440)
115 KOG0301 Phospholipase A2-activ 99.9 5.4E-25 1.2E-29 178.1 22.4 233 5-262 52-288 (745)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.4E-23 2.9E-28 167.4 30.4 245 6-268 27-280 (300)
117 KOG0302 Ribosome Assembly prot 99.9 2.1E-25 4.6E-30 168.4 18.5 212 6-272 147-383 (440)
118 KOG1407 WD40 repeat protein [F 99.9 2.7E-25 5.8E-30 160.1 17.1 229 46-286 14-289 (313)
119 KOG0264 Nucleosome remodeling 99.9 2.7E-25 5.8E-30 171.5 18.2 209 4-221 171-404 (422)
120 KOG1036 Mitotic spindle checkp 99.9 1.7E-24 3.7E-29 159.5 20.8 233 8-253 52-295 (323)
121 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-23 4.2E-28 154.5 26.2 213 42-268 4-263 (311)
122 KOG4328 WD40 protein [Function 99.9 4.8E-25 1E-29 170.3 17.8 242 4-255 180-443 (498)
123 KOG2055 WD40 repeat protein [G 99.9 2.7E-24 5.8E-29 166.4 20.6 240 10-263 213-466 (514)
124 KOG2106 Uncharacterized conser 99.9 1.7E-23 3.6E-28 163.9 25.0 230 6-259 241-474 (626)
125 KOG0650 WD40 repeat nucleolar 99.9 5.3E-24 1.1E-28 169.9 21.6 248 4-265 394-683 (733)
126 KOG1408 WD40 repeat protein [F 99.9 2.7E-24 5.9E-29 175.1 19.6 256 4-262 72-534 (1080)
127 KOG0301 Phospholipase A2-activ 99.9 4.1E-24 9E-29 173.0 19.6 234 5-266 9-248 (745)
128 KOG1332 Vesicle coat complex C 99.9 3.1E-24 6.7E-29 153.3 16.3 208 5-221 51-286 (299)
129 KOG0646 WD40 repeat protein [G 99.9 4E-24 8.8E-29 165.6 18.0 212 6-220 119-349 (476)
130 KOG0772 Uncharacterized conser 99.9 2.1E-24 4.4E-29 169.4 15.7 216 46-263 161-395 (641)
131 KOG2919 Guanine nucleotide-bin 99.9 2.6E-23 5.7E-28 154.4 20.6 243 13-255 52-363 (406)
132 KOG1539 WD repeat protein [Gen 99.9 9.4E-24 2E-28 174.3 20.0 199 9-222 447-649 (910)
133 KOG0267 Microtubule severing p 99.9 1.6E-25 3.5E-30 182.0 8.8 194 6-213 66-260 (825)
134 KOG0639 Transducin-like enhanc 99.9 1.6E-24 3.4E-29 169.7 12.4 194 11-220 510-703 (705)
135 KOG0303 Actin-binding protein 99.9 5.5E-23 1.2E-27 156.4 18.4 195 5-255 76-286 (472)
136 KOG0268 Sof1-like rRNA process 99.9 1E-23 2.3E-28 158.6 14.1 208 4-225 103-349 (433)
137 KOG1538 Uncharacterized conser 99.9 4E-23 8.6E-28 167.3 18.3 231 12-260 14-291 (1081)
138 KOG0270 WD40 repeat-containing 99.9 4.1E-23 8.9E-28 159.2 16.7 210 6-226 239-454 (463)
139 KOG1063 RNA polymerase II elon 99.9 9.5E-23 2.1E-27 165.3 19.6 252 5-259 262-645 (764)
140 KOG1274 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 165.5 23.3 241 3-254 49-292 (933)
141 KOG2096 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 149.9 17.0 204 46-257 80-303 (420)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-20 3.8E-25 149.5 29.8 215 13-242 75-300 (300)
143 KOG0321 WD40 repeat-containing 99.9 3.5E-22 7.7E-27 160.6 18.9 251 6-266 96-390 (720)
144 KOG2445 Nuclear pore complex c 99.9 2E-21 4.3E-26 143.5 21.1 234 6-242 55-342 (361)
145 KOG1063 RNA polymerase II elon 99.9 5.4E-22 1.2E-26 160.9 19.8 250 5-260 356-697 (764)
146 KOG4378 Nuclear protein COP1 [ 99.9 2.1E-22 4.6E-27 157.7 16.3 218 14-244 83-305 (673)
147 KOG0307 Vesicle coat complex C 99.9 4.6E-23 1E-27 175.7 13.4 240 10-262 64-327 (1049)
148 KOG0270 WD40 repeat-containing 99.9 6.4E-22 1.4E-26 152.6 17.6 232 21-270 191-452 (463)
149 KOG0269 WD40 repeat-containing 99.9 1.9E-22 4.2E-27 165.4 15.6 241 11-268 40-297 (839)
150 KOG1009 Chromatin assembly com 99.9 5.7E-21 1.2E-25 145.9 21.9 259 5-267 60-377 (434)
151 KOG0771 Prolactin regulatory e 99.9 5.7E-22 1.2E-26 152.1 16.1 199 14-221 148-354 (398)
152 KOG1445 Tumor-specific antigen 99.9 1.2E-21 2.6E-26 158.0 18.1 134 119-255 649-787 (1012)
153 KOG0642 Cell-cycle nuclear pro 99.9 7.6E-22 1.6E-26 156.6 16.7 209 5-256 289-555 (577)
154 KOG2055 WD40 repeat protein [G 99.9 2.7E-21 5.7E-26 150.0 17.1 208 8-221 300-512 (514)
155 KOG1007 WD repeat protein TSSC 99.9 8.6E-21 1.9E-25 139.1 18.6 238 5-257 58-356 (370)
156 KOG1034 Transcriptional repres 99.9 2.1E-21 4.6E-26 144.6 15.5 242 7-255 86-376 (385)
157 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-21 4.2E-26 152.4 16.0 238 13-263 37-281 (673)
158 KOG1034 Transcriptional repres 99.9 8.8E-22 1.9E-26 146.5 13.2 210 5-221 130-383 (385)
159 KOG1524 WD40 repeat-containing 99.9 2.9E-21 6.4E-26 152.7 16.2 210 23-262 76-286 (737)
160 KOG0303 Actin-binding protein 99.9 5.7E-21 1.2E-25 145.6 17.1 155 47-250 76-234 (472)
161 KOG1188 WD40 repeat protein [G 99.9 3.7E-21 7.9E-26 144.0 15.6 196 23-223 41-244 (376)
162 KOG4328 WD40 protein [Function 99.9 1.3E-20 2.8E-25 146.1 18.8 249 4-258 228-490 (498)
163 KOG1009 Chromatin assembly com 99.9 2.5E-21 5.5E-26 147.8 14.6 208 5-251 7-249 (434)
164 KOG2106 Uncharacterized conser 99.9 5.8E-20 1.3E-24 144.3 22.4 239 4-255 362-619 (626)
165 KOG0650 WD40 repeat nucleolar 99.9 4.2E-20 9.1E-25 147.9 20.3 224 45-272 393-647 (733)
166 KOG1273 WD40 repeat protein [G 99.9 1.4E-19 3E-24 134.4 21.2 241 5-259 60-320 (405)
167 KOG2048 WD40 repeat protein [G 99.9 4.9E-19 1.1E-23 143.6 26.1 245 4-260 62-317 (691)
168 KOG1523 Actin-related protein 99.9 2.1E-19 4.5E-24 133.6 20.9 235 6-250 6-267 (361)
169 KOG2110 Uncharacterized conser 99.9 1E-18 2.2E-23 132.3 24.7 234 9-262 4-248 (391)
170 KOG0322 G-protein beta subunit 99.9 2E-20 4.4E-25 135.4 14.8 245 4-255 8-316 (323)
171 KOG0649 WD40 repeat protein [G 99.9 6.6E-19 1.4E-23 126.3 21.7 222 11-251 11-263 (325)
172 KOG1587 Cytoplasmic dynein int 99.9 2.4E-19 5.2E-24 148.5 22.5 253 3-261 235-515 (555)
173 KOG0644 Uncharacterized conser 99.9 2.1E-21 4.6E-26 160.8 9.9 240 5-256 185-462 (1113)
174 KOG0290 Conserved WD40 repeat- 99.8 1E-19 2.2E-24 133.6 16.4 197 7-255 147-359 (364)
175 KOG0642 Cell-cycle nuclear pro 99.8 2.4E-20 5.3E-25 148.1 14.1 214 2-229 335-569 (577)
176 PRK11028 6-phosphogluconolacto 99.8 1.4E-17 3E-22 134.3 30.3 239 9-253 33-294 (330)
177 PRK01742 tolB translocation pr 99.8 7E-19 1.5E-23 146.1 23.4 223 3-244 196-427 (429)
178 KOG1272 WD40-repeat-containing 99.8 1.5E-20 3.2E-25 146.2 10.3 225 12-254 131-355 (545)
179 KOG0307 Vesicle coat complex C 99.8 1.5E-20 3.2E-25 160.7 10.8 209 6-224 112-330 (1049)
180 KOG1963 WD40 repeat protein [G 99.8 2.2E-18 4.7E-23 143.9 23.0 255 2-259 8-319 (792)
181 KOG0321 WD40 repeat-containing 99.8 6.5E-19 1.4E-23 142.1 18.6 243 16-262 55-347 (720)
182 COG2319 FOG: WD40 repeat [Gene 99.8 6.1E-17 1.3E-21 135.2 31.1 237 5-255 60-307 (466)
183 KOG1963 WD40 repeat protein [G 99.8 3.4E-18 7.4E-23 142.7 22.7 250 8-268 203-539 (792)
184 KOG1310 WD40 repeat protein [G 99.8 1.2E-19 2.7E-24 144.1 13.0 220 5-271 45-307 (758)
185 KOG2111 Uncharacterized conser 99.8 6.2E-17 1.4E-21 120.5 23.7 237 12-265 7-259 (346)
186 PRK03629 tolB translocation pr 99.8 4.7E-17 1E-21 134.9 25.7 225 3-243 191-428 (429)
187 KOG4283 Transcription-coupled 99.8 2.9E-18 6.2E-23 126.4 16.0 214 7-226 98-338 (397)
188 PRK01742 tolB translocation pr 99.8 1.4E-17 3E-22 138.4 22.0 208 31-256 183-395 (429)
189 KOG1538 Uncharacterized conser 99.8 9.2E-19 2E-23 142.4 14.3 209 5-221 48-293 (1081)
190 KOG4227 WD40 repeat protein [G 99.8 8.9E-18 1.9E-22 128.6 18.0 248 6-267 52-322 (609)
191 PRK04922 tolB translocation pr 99.8 9.2E-17 2E-21 133.8 24.5 224 3-242 196-432 (433)
192 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-15 2.6E-20 127.4 31.3 238 5-255 150-393 (466)
193 PRK05137 tolB translocation pr 99.8 1.6E-16 3.4E-21 132.5 25.5 225 3-243 194-433 (435)
194 KOG1445 Tumor-specific antigen 99.8 2E-18 4.4E-23 139.6 13.5 192 10-255 627-837 (1012)
195 KOG0290 Conserved WD40 repeat- 99.8 1.7E-17 3.7E-22 122.0 16.5 203 8-261 94-317 (364)
196 PF08662 eIF2A: Eukaryotic tra 99.8 1E-16 2.2E-21 117.9 20.8 156 14-230 9-187 (194)
197 KOG4497 Uncharacterized conser 99.8 8.8E-17 1.9E-21 120.5 19.8 249 11-267 49-391 (447)
198 KOG0771 Prolactin regulatory e 99.8 2.1E-17 4.6E-22 127.3 16.5 198 56-263 148-355 (398)
199 PRK02889 tolB translocation pr 99.8 5.4E-16 1.2E-20 128.8 25.6 224 4-243 189-425 (427)
200 KOG1517 Guanine nucleotide bin 99.8 1.7E-16 3.7E-21 135.3 22.4 248 7-270 1061-1336(1387)
201 KOG2394 WD40 protein DMR-N9 [G 99.8 1.5E-17 3.3E-22 131.9 14.8 196 20-242 183-384 (636)
202 PF08662 eIF2A: Eukaryotic tra 99.8 1E-16 2.2E-21 117.9 17.3 159 97-267 9-179 (194)
203 KOG1517 Guanine nucleotide bin 99.8 1.6E-16 3.5E-21 135.5 20.5 235 11-256 1110-1375(1387)
204 PRK02889 tolB translocation pr 99.8 1.1E-15 2.3E-20 127.0 25.1 210 32-256 176-394 (427)
205 KOG2110 Uncharacterized conser 99.8 1.7E-15 3.7E-20 115.1 23.2 194 13-222 49-249 (391)
206 KOG1007 WD repeat protein TSSC 99.8 1.6E-16 3.4E-21 117.0 17.1 202 8-221 121-361 (370)
207 KOG2394 WD40 protein DMR-N9 [G 99.8 2.3E-17 4.9E-22 130.9 13.6 136 10-200 219-383 (636)
208 PRK05137 tolB translocation pr 99.8 1.8E-15 3.9E-20 126.2 25.4 207 32-253 182-397 (435)
209 KOG2919 Guanine nucleotide-bin 99.7 7.7E-17 1.7E-21 120.4 14.7 188 13-213 161-362 (406)
210 PRK03629 tolB translocation pr 99.7 5.4E-15 1.2E-19 122.7 27.1 209 33-256 180-397 (429)
211 PRK11028 6-phosphogluconolacto 99.7 1.5E-14 3.3E-19 116.7 29.0 218 26-253 6-248 (330)
212 KOG0649 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 107.9 21.0 186 12-250 116-303 (325)
213 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 3E-20 126.4 21.7 227 32-270 222-475 (555)
214 PRK04922 tolB translocation pr 99.7 2.1E-15 4.6E-20 125.7 23.1 208 32-254 184-400 (433)
215 KOG2111 Uncharacterized conser 99.7 3.9E-14 8.4E-19 105.9 26.8 178 32-222 75-257 (346)
216 KOG2139 WD40 repeat protein [G 99.7 8.1E-16 1.8E-20 116.7 16.8 200 52-256 98-304 (445)
217 KOG0322 G-protein beta subunit 99.7 2E-16 4.4E-21 114.9 12.8 162 8-220 148-322 (323)
218 KOG1188 WD40 repeat protein [G 99.7 2E-16 4.4E-21 118.9 13.1 208 5-220 65-345 (376)
219 PF02239 Cytochrom_D1: Cytochr 99.7 5.2E-14 1.1E-18 113.7 27.8 229 13-252 39-335 (369)
220 KOG1240 Protein kinase contain 99.7 7.3E-15 1.6E-19 127.4 23.9 248 6-269 1044-1336(1431)
221 KOG3881 Uncharacterized conser 99.7 2.8E-15 6E-20 114.8 18.7 220 10-245 105-344 (412)
222 KOG1524 WD40 repeat-containing 99.7 5.6E-16 1.2E-20 123.3 14.3 183 6-218 100-283 (737)
223 TIGR02800 propeller_TolB tol-p 99.7 3.6E-14 7.7E-19 118.5 25.7 210 32-256 170-388 (417)
224 PRK01029 tolB translocation pr 99.7 6.6E-14 1.4E-18 115.9 26.5 230 3-244 177-426 (428)
225 KOG4227 WD40 repeat protein [G 99.7 1E-14 2.2E-19 112.1 19.7 249 2-255 95-380 (609)
226 KOG1523 Actin-related protein 99.7 5E-15 1.1E-19 110.6 17.2 204 47-260 5-234 (361)
227 KOG2139 WD40 repeat protein [G 99.7 3.1E-14 6.7E-19 108.2 21.4 227 11-254 99-367 (445)
228 TIGR02800 propeller_TolB tol-p 99.7 3.5E-14 7.5E-19 118.5 24.1 211 3-229 182-404 (417)
229 KOG2321 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 116.0 20.4 242 8-271 49-306 (703)
230 PRK00178 tolB translocation pr 99.7 7.8E-14 1.7E-18 116.6 25.3 225 3-243 191-428 (430)
231 KOG4497 Uncharacterized conser 99.7 9.9E-14 2.1E-18 104.3 22.4 246 6-256 87-426 (447)
232 KOG1334 WD40 repeat protein [G 99.7 4.6E-16 1E-20 122.2 10.5 255 5-266 137-465 (559)
233 PRK04792 tolB translocation pr 99.7 1.2E-13 2.6E-18 115.2 24.3 223 5-243 212-447 (448)
234 KOG2315 Predicted translation 99.7 6E-14 1.3E-18 112.4 21.2 253 10-272 34-395 (566)
235 KOG0644 Uncharacterized conser 99.7 2.1E-16 4.5E-21 131.7 7.2 209 5-226 227-473 (1113)
236 PF10282 Lactonase: Lactonase, 99.6 4.6E-12 9.9E-17 102.5 31.0 240 11-256 37-315 (345)
237 KOG1310 WD40 repeat protein [G 99.6 1.3E-15 2.8E-20 121.6 10.0 161 44-255 42-224 (758)
238 PRK00178 tolB translocation pr 99.6 5.9E-13 1.3E-17 111.4 26.0 208 33-255 180-396 (430)
239 PRK01029 tolB translocation pr 99.6 8.6E-13 1.9E-17 109.3 25.7 214 32-252 165-390 (428)
240 TIGR02658 TTQ_MADH_Hv methylam 99.6 4.1E-12 9E-17 100.5 27.9 224 18-252 53-319 (352)
241 KOG2321 WD40 repeat protein [G 99.6 2.9E-14 6.2E-19 114.5 15.7 200 15-258 138-339 (703)
242 KOG1272 WD40-repeat-containing 99.6 1.8E-15 3.8E-20 118.3 7.9 195 54-270 131-326 (545)
243 PRK04792 tolB translocation pr 99.6 1.8E-12 3.8E-17 108.3 25.5 209 33-256 199-416 (448)
244 KOG1240 Protein kinase contain 99.6 6E-14 1.3E-18 121.8 16.7 222 37-269 1034-1275(1431)
245 KOG4547 WD40 repeat-containing 99.6 9.8E-13 2.1E-17 106.1 21.2 180 20-254 3-211 (541)
246 KOG1354 Serine/threonine prote 99.6 5.7E-13 1.2E-17 100.9 18.0 241 10-260 25-357 (433)
247 KOG3881 Uncharacterized conser 99.6 2.2E-12 4.8E-17 99.1 20.2 258 10-285 55-338 (412)
248 KOG1064 RAVE (regulator of V-A 99.6 3.3E-14 7.2E-19 127.6 11.7 204 5-231 2203-2408(2439)
249 COG2706 3-carboxymuconate cycl 99.6 9.2E-11 2E-15 89.8 28.6 244 6-256 35-314 (346)
250 KOG0974 WD-repeat protein WDR6 99.5 8.4E-13 1.8E-17 113.0 18.4 195 16-272 93-293 (967)
251 PF10282 Lactonase: Lactonase, 99.5 1.2E-10 2.6E-15 94.3 29.7 223 11-240 87-345 (345)
252 PF02239 Cytochrom_D1: Cytochr 99.5 1.4E-11 3.1E-16 99.7 24.1 176 23-251 6-190 (369)
253 COG4946 Uncharacterized protei 99.5 1.2E-10 2.6E-15 92.3 25.8 157 143-304 356-524 (668)
254 KOG1409 Uncharacterized conser 99.5 5.9E-12 1.3E-16 95.4 17.7 200 10-222 68-271 (404)
255 KOG1334 WD40 repeat protein [G 99.5 1.6E-13 3.5E-18 108.2 9.0 217 3-222 225-467 (559)
256 KOG0280 Uncharacterized conser 99.5 3.5E-11 7.5E-16 89.4 20.1 215 31-256 45-279 (339)
257 COG2706 3-carboxymuconate cycl 99.5 6.1E-10 1.3E-14 85.5 27.4 216 31-253 15-264 (346)
258 KOG2041 WD40 repeat protein [G 99.5 2.1E-12 4.6E-17 106.9 14.5 232 10-254 14-280 (1189)
259 KOG0974 WD-repeat protein WDR6 99.4 2.1E-12 4.4E-17 110.7 13.1 148 18-222 141-289 (967)
260 PRK04043 tolB translocation pr 99.4 5E-10 1.1E-14 92.4 26.3 195 12-223 189-402 (419)
261 KOG2315 Predicted translation 99.4 1.2E-10 2.6E-15 93.9 21.2 220 8-245 163-413 (566)
262 KOG4190 Uncharacterized conser 99.4 6.2E-13 1.3E-17 107.0 7.4 199 5-256 730-941 (1034)
263 PRK04043 tolB translocation pr 99.4 1.8E-09 4E-14 89.2 27.7 205 33-255 170-390 (419)
264 COG5354 Uncharacterized protei 99.4 3.9E-10 8.4E-15 90.0 21.9 245 11-269 72-397 (561)
265 KOG0280 Uncharacterized conser 99.4 3.2E-11 6.9E-16 89.6 14.8 188 13-256 124-325 (339)
266 KOG2314 Translation initiation 99.4 1.7E-10 3.6E-15 93.1 19.4 235 12-253 251-558 (698)
267 PF08450 SGL: SMP-30/Gluconola 99.4 1.8E-08 4E-13 77.8 30.6 225 15-251 4-244 (246)
268 KOG1064 RAVE (regulator of V-A 99.4 3.4E-12 7.4E-17 115.1 10.5 216 28-275 2186-2406(2439)
269 KOG2314 Translation initiation 99.4 7.9E-10 1.7E-14 89.3 22.3 230 14-251 214-511 (698)
270 KOG1354 Serine/threonine prote 99.4 7E-11 1.5E-15 89.8 14.8 208 10-223 84-361 (433)
271 KOG3914 WD repeat protein WDR4 99.3 3.6E-11 7.7E-16 93.0 13.5 165 54-230 64-232 (390)
272 KOG4532 WD40-like repeat conta 99.3 1.1E-09 2.4E-14 80.6 19.7 223 23-254 85-324 (344)
273 PF15492 Nbas_N: Neuroblastoma 99.3 2.7E-09 5.8E-14 79.6 21.8 192 13-230 46-268 (282)
274 KOG2041 WD40 repeat protein [G 99.3 9.1E-11 2E-15 97.5 15.5 237 5-252 66-328 (1189)
275 COG5170 CDC55 Serine/threonine 99.3 3E-11 6.4E-16 90.7 11.0 245 9-272 25-314 (460)
276 COG4946 Uncharacterized protei 99.3 2E-09 4.3E-14 85.6 20.7 172 21-251 331-507 (668)
277 KOG4547 WD40 repeat-containing 99.3 5.7E-10 1.2E-14 90.5 15.9 145 21-222 69-221 (541)
278 PF04762 IKI3: IKI3 family; I 99.3 1.3E-08 2.9E-13 91.5 26.1 232 10-252 75-369 (928)
279 PLN02919 haloacid dehalogenase 99.2 1.3E-07 2.8E-12 86.8 32.2 237 14-256 571-882 (1057)
280 COG5354 Uncharacterized protei 99.2 3.7E-09 7.9E-14 84.6 18.7 226 9-251 31-293 (561)
281 TIGR02658 TTQ_MADH_Hv methylam 99.2 8.9E-08 1.9E-12 76.3 26.4 203 14-230 108-339 (352)
282 KOG1409 Uncharacterized conser 99.2 8.6E-10 1.9E-14 83.9 14.1 210 43-262 15-270 (404)
283 PF04762 IKI3: IKI3 family; I 99.2 2.8E-08 6E-13 89.5 25.9 238 11-254 22-326 (928)
284 PF07433 DUF1513: Protein of u 99.1 1E-06 2.2E-11 68.0 27.2 237 14-255 8-278 (305)
285 PLN02919 haloacid dehalogenase 99.1 1.7E-07 3.7E-12 86.1 27.2 208 12-225 625-892 (1057)
286 KOG0882 Cyclophilin-related pe 99.1 1.7E-09 3.7E-14 85.2 12.4 241 9-258 8-302 (558)
287 KOG4714 Nucleoporin [Nuclear s 99.1 4E-09 8.7E-14 77.4 13.0 201 13-222 39-255 (319)
288 PF00400 WD40: WD domain, G-be 99.1 3.6E-10 7.7E-15 60.0 5.8 39 42-80 1-39 (39)
289 PF07433 DUF1513: Protein of u 99.1 7.5E-08 1.6E-12 74.1 20.3 189 16-217 56-281 (305)
290 KOG2695 WD40 repeat protein [G 99.1 8.1E-10 1.8E-14 84.2 9.6 164 26-242 228-402 (425)
291 KOG1832 HIV-1 Vpr-binding prot 99.1 1.4E-10 3E-15 98.7 5.8 200 2-272 1092-1296(1516)
292 KOG4190 Uncharacterized conser 99.1 4.5E-10 9.7E-15 90.9 8.3 168 45-260 728-904 (1034)
293 KOG1912 WD40 repeat protein [G 99.1 3.4E-08 7.4E-13 83.3 18.7 210 5-222 50-305 (1062)
294 KOG2066 Vacuolar assembly/sort 99.1 1.9E-08 4.2E-13 84.9 16.6 186 11-221 40-233 (846)
295 KOG1645 RING-finger-containing 99.0 2.3E-08 4.9E-13 78.0 15.6 241 5-256 188-456 (463)
296 PF00400 WD40: WD domain, G-be 99.0 8.7E-10 1.9E-14 58.5 5.6 34 5-38 6-39 (39)
297 PF15492 Nbas_N: Neuroblastoma 99.0 2.1E-06 4.6E-11 64.5 24.9 226 15-267 2-259 (282)
298 TIGR03300 assembly_YfgL outer 99.0 7.3E-07 1.6E-11 73.6 25.1 211 22-256 145-373 (377)
299 KOG0882 Cyclophilin-related pe 99.0 5.5E-09 1.2E-13 82.5 11.6 218 6-230 49-314 (558)
300 KOG3914 WD repeat protein WDR4 99.0 1.3E-08 2.8E-13 79.1 12.1 161 13-185 65-232 (390)
301 PF08450 SGL: SMP-30/Gluconola 99.0 4.2E-06 9.1E-11 64.7 25.7 186 13-209 42-243 (246)
302 KOG2695 WD40 repeat protein [G 98.9 3.8E-09 8.2E-14 80.6 7.6 141 10-200 252-401 (425)
303 KOG2114 Vacuolar assembly/sort 98.9 7.1E-07 1.5E-11 76.4 21.7 203 17-230 30-252 (933)
304 PF13360 PQQ_2: PQQ-like domai 98.9 4E-06 8.6E-11 64.5 24.5 208 31-256 2-224 (238)
305 KOG1920 IkappaB kinase complex 98.9 4.9E-07 1.1E-11 80.2 21.0 193 52-249 68-306 (1265)
306 TIGR03300 assembly_YfgL outer 98.9 1.8E-06 3.8E-11 71.4 23.7 221 21-260 64-295 (377)
307 KOG1920 IkappaB kinase complex 98.9 3E-06 6.5E-11 75.4 25.3 226 10-245 68-347 (1265)
308 PF08596 Lgl_C: Lethal giant l 98.9 7.8E-06 1.7E-10 66.9 25.7 236 12-256 3-330 (395)
309 PF11768 DUF3312: Protein of u 98.9 4.9E-07 1.1E-11 74.4 18.0 74 144-222 257-330 (545)
310 KOG0309 Conserved WD40 repeat- 98.9 1.7E-08 3.8E-13 84.6 9.5 209 5-271 109-343 (1081)
311 KOG1912 WD40 repeat protein [G 98.9 1E-06 2.3E-11 74.7 19.7 236 9-257 14-299 (1062)
312 PF11768 DUF3312: Protein of u 98.8 5.5E-05 1.2E-09 62.8 27.2 114 148-262 207-329 (545)
313 PF04841 Vps16_N: Vps16, N-ter 98.8 1E-05 2.2E-10 67.0 23.5 215 16-245 34-272 (410)
314 KOG0309 Conserved WD40 repeat- 98.8 9.9E-08 2.2E-12 80.2 11.1 183 13-249 70-262 (1081)
315 PF13360 PQQ_2: PQQ-like domai 98.8 1.1E-05 2.3E-10 62.2 22.0 187 21-228 35-237 (238)
316 KOG4714 Nucleoporin [Nuclear s 98.8 3.4E-08 7.4E-13 72.7 7.1 73 11-83 180-255 (319)
317 PRK02888 nitrous-oxide reducta 98.8 3.7E-06 7.9E-11 71.1 19.8 217 19-252 201-451 (635)
318 COG0823 TolB Periplasmic compo 98.7 2.3E-06 5.1E-11 70.6 17.7 200 42-254 182-391 (425)
319 PF06977 SdiA-regulated: SdiA- 98.7 3.2E-05 6.9E-10 58.9 22.0 207 4-254 15-242 (248)
320 KOG1275 PAB-dependent poly(A) 98.7 2.7E-07 5.8E-12 79.4 11.7 146 20-175 185-341 (1118)
321 KOG1275 PAB-dependent poly(A) 98.7 1.1E-06 2.3E-11 75.9 15.1 174 23-256 148-336 (1118)
322 KOG4532 WD40-like repeat conta 98.7 7.9E-06 1.7E-10 60.9 17.7 191 24-221 130-331 (344)
323 COG0823 TolB Periplasmic compo 98.6 1.2E-05 2.6E-10 66.5 19.4 192 6-211 188-389 (425)
324 KOG2114 Vacuolar assembly/sort 98.6 2.7E-05 5.9E-10 67.1 21.5 195 59-255 30-237 (933)
325 PRK02888 nitrous-oxide reducta 98.6 7.8E-05 1.7E-09 63.4 23.5 184 60-260 200-402 (635)
326 KOG3617 WD40 and TPR repeat-co 98.6 1.3E-06 2.8E-11 75.0 13.1 70 13-82 62-131 (1416)
327 PF03178 CPSF_A: CPSF A subuni 98.6 0.00022 4.7E-09 57.6 26.5 209 32-257 2-260 (321)
328 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00022 4.7E-09 58.4 24.2 231 10-250 42-345 (353)
329 PRK11138 outer membrane biogen 98.5 0.0002 4.3E-09 59.6 23.9 211 24-256 162-388 (394)
330 KOG3617 WD40 and TPR repeat-co 98.5 2.5E-06 5.4E-11 73.3 11.5 104 9-114 14-122 (1416)
331 KOG2066 Vacuolar assembly/sort 98.5 3.7E-05 8E-10 65.9 18.1 160 5-176 53-233 (846)
332 KOG4640 Anaphase-promoting com 98.5 1.2E-06 2.6E-11 72.6 9.2 93 10-103 20-115 (665)
333 PF04053 Coatomer_WDAD: Coatom 98.4 0.00039 8.4E-09 58.0 23.5 232 8-272 30-272 (443)
334 COG3391 Uncharacterized conser 98.4 0.00054 1.2E-08 56.5 24.1 222 14-244 77-310 (381)
335 PRK11138 outer membrane biogen 98.4 0.0001 2.2E-09 61.3 20.1 196 21-230 68-283 (394)
336 KOG3621 WD40 repeat-containing 98.4 4.4E-06 9.5E-11 70.2 11.6 146 9-200 32-179 (726)
337 COG3386 Gluconolactonase [Carb 98.4 0.00047 1E-08 54.6 24.2 228 17-254 31-277 (307)
338 KOG4640 Anaphase-promoting com 98.4 2E-06 4.3E-11 71.4 9.3 93 146-242 20-115 (665)
339 COG5170 CDC55 Serine/threonine 98.4 2.4E-06 5.2E-11 64.9 8.9 176 7-220 169-366 (460)
340 PF02897 Peptidase_S9_N: Proly 98.4 0.0009 2E-08 56.2 25.8 229 12-249 125-387 (414)
341 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00022 4.7E-09 53.4 18.1 82 22-103 63-145 (354)
342 PF06433 Me-amine-dh_H: Methyl 98.4 0.00064 1.4E-08 53.6 21.4 237 15-268 40-321 (342)
343 PF14583 Pectate_lyase22: Olig 98.4 0.00078 1.7E-08 54.2 22.2 101 149-254 240-372 (386)
344 KOG1645 RING-finger-containing 98.3 1.1E-05 2.3E-10 63.6 10.9 162 34-251 175-349 (463)
345 KOG1008 Uncharacterized conser 98.3 1.7E-07 3.6E-12 77.6 0.4 162 5-221 97-275 (783)
346 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00039 8.4E-09 56.9 18.9 217 19-256 1-260 (353)
347 PF04053 Coatomer_WDAD: Coatom 98.2 8.5E-05 1.8E-09 61.8 15.0 138 92-256 31-168 (443)
348 smart00320 WD40 WD40 repeats. 98.2 8.6E-06 1.9E-10 42.2 5.6 39 42-80 2-40 (40)
349 COG3391 Uncharacterized conser 98.2 0.0028 6.1E-08 52.4 27.7 233 12-253 32-273 (381)
350 PRK13616 lipoprotein LpqB; Pro 98.1 0.00094 2E-08 58.0 19.6 193 11-217 350-564 (591)
351 KOG3621 WD40 repeat-containing 98.1 2.4E-05 5.3E-10 65.9 9.6 114 148-263 35-155 (726)
352 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00077 1.7E-08 50.5 15.9 102 158-262 63-165 (354)
353 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00091 2E-08 43.5 14.2 86 13-104 2-91 (111)
354 cd00216 PQQ_DH Dehydrogenases 98.1 0.0039 8.4E-08 53.5 22.2 199 22-230 61-328 (488)
355 KOG1008 Uncharacterized conser 98.1 1.2E-06 2.5E-11 72.9 0.7 199 52-256 56-268 (783)
356 PF08553 VID27: VID27 cytoplas 98.0 0.00035 7.5E-09 61.7 15.0 148 64-220 493-646 (794)
357 KOG1832 HIV-1 Vpr-binding prot 98.0 5.3E-06 1.1E-10 71.8 3.9 147 43-248 1092-1246(1516)
358 smart00320 WD40 WD40 repeats. 98.0 3.3E-05 7.1E-10 39.9 5.4 38 137-174 3-40 (40)
359 PF03178 CPSF_A: CPSF A subuni 97.9 0.0065 1.4E-07 49.1 22.0 183 22-218 42-262 (321)
360 PF00780 CNH: CNH domain; Int 97.9 0.0056 1.2E-07 48.2 24.3 214 20-254 5-248 (275)
361 cd00216 PQQ_DH Dehydrogenases 97.9 0.011 2.4E-07 50.7 23.5 224 23-260 111-422 (488)
362 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.002 4.3E-08 41.9 14.4 98 149-255 2-107 (111)
363 COG3490 Uncharacterized protei 97.9 0.0025 5.5E-08 48.6 15.7 190 17-219 120-346 (366)
364 PF12894 Apc4_WD40: Anaphase-p 97.9 7.6E-05 1.6E-09 40.5 5.4 42 2-44 3-44 (47)
365 PF08596 Lgl_C: Lethal giant l 97.9 0.00093 2E-08 55.0 14.1 155 54-221 3-173 (395)
366 COG3204 Uncharacterized protei 97.9 0.0072 1.6E-07 46.5 19.5 201 7-250 82-301 (316)
367 PF06433 Me-amine-dh_H: Methyl 97.8 0.009 1.9E-07 47.4 22.9 200 14-230 98-329 (342)
368 PF08553 VID27: VID27 cytoplas 97.8 0.0016 3.5E-08 57.7 16.0 125 134-260 512-646 (794)
369 PRK13616 lipoprotein LpqB; Pro 97.8 0.0051 1.1E-07 53.6 18.3 212 31-255 328-561 (591)
370 PF04841 Vps16_N: Vps16, N-ter 97.8 0.015 3.3E-07 48.5 22.8 70 146-219 216-285 (410)
371 KOG2395 Protein involved in va 97.7 0.0011 2.4E-08 54.7 12.6 149 63-221 344-500 (644)
372 PF05694 SBP56: 56kDa selenium 97.6 0.028 6.1E-07 46.1 17.7 187 18-210 137-392 (461)
373 KOG2079 Vacuolar assembly/sort 97.5 0.00074 1.6E-08 60.3 9.5 95 158-254 99-197 (1206)
374 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00045 9.7E-09 37.5 5.2 35 190-225 10-44 (47)
375 KOG2079 Vacuolar assembly/sort 97.4 0.0029 6.2E-08 56.7 11.8 70 10-81 130-202 (1206)
376 PF02897 Peptidase_S9_N: Proly 97.4 0.063 1.4E-06 45.2 22.4 195 54-255 125-347 (414)
377 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.081 1.8E-06 45.9 20.3 76 167-246 440-517 (527)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.065 1.4E-06 44.4 20.1 89 142-230 303-407 (415)
379 KOG2395 Protein involved in va 97.3 0.036 7.8E-07 46.3 16.1 125 134-263 364-501 (644)
380 KOG4441 Proteins containing BT 97.3 0.049 1.1E-06 47.6 17.3 234 20-265 283-544 (571)
381 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.12 2.6E-06 44.8 23.9 67 23-91 121-198 (527)
382 TIGR02604 Piru_Ver_Nterm putat 97.1 0.1 2.2E-06 43.1 17.4 110 140-253 65-204 (367)
383 KOG4499 Ca2+-binding protein R 97.1 0.062 1.3E-06 40.1 19.0 220 22-251 27-273 (310)
384 PF00780 CNH: CNH domain; Int 97.1 0.084 1.8E-06 41.6 22.7 204 11-231 36-265 (275)
385 KOG2280 Vacuolar assembly/sort 97.1 0.074 1.6E-06 46.4 16.5 166 33-203 65-271 (829)
386 COG5167 VID27 Protein involved 97.1 0.011 2.5E-07 48.9 11.1 150 63-221 478-632 (776)
387 PF10647 Gmad1: Lipoprotein Lp 97.1 0.091 2E-06 40.8 21.0 152 54-213 25-187 (253)
388 PF15390 DUF4613: Domain of un 97.1 0.081 1.8E-06 45.0 15.8 148 11-176 20-186 (671)
389 COG3490 Uncharacterized protei 97.0 0.1 2.2E-06 40.2 18.6 214 41-260 57-307 (366)
390 COG3386 Gluconolactonase [Carb 96.9 0.15 3.3E-06 40.7 19.9 169 33-209 86-273 (307)
391 PF05096 Glu_cyclase_2: Glutam 96.9 0.13 2.8E-06 39.6 23.2 181 13-250 47-248 (264)
392 PF10647 Gmad1: Lipoprotein Lp 96.8 0.16 3.4E-06 39.5 21.2 154 12-168 25-187 (253)
393 KOG2444 WD40 repeat protein [G 96.8 0.0041 8.8E-08 45.9 5.5 62 157-221 113-177 (238)
394 PF06977 SdiA-regulated: SdiA- 96.8 0.17 3.7E-06 39.0 19.8 158 47-256 16-194 (248)
395 PF12234 Rav1p_C: RAVE protein 96.7 0.077 1.7E-06 46.3 13.4 104 148-253 31-149 (631)
396 PF12234 Rav1p_C: RAVE protein 96.6 0.14 3.1E-06 44.7 14.4 118 54-176 31-156 (631)
397 PF14870 PSII_BNR: Photosynthe 96.6 0.27 5.9E-06 39.1 21.5 157 49-218 141-301 (302)
398 PHA03098 kelch-like protein; P 96.5 0.48 1E-05 41.4 18.2 65 157-224 437-514 (534)
399 PF07995 GSDH: Glucose / Sorbo 96.5 0.35 7.6E-06 39.3 23.3 238 12-255 3-328 (331)
400 KOG2444 WD40 repeat protein [G 96.5 0.021 4.5E-07 42.3 7.5 102 158-266 70-176 (238)
401 TIGR03074 PQQ_membr_DH membran 96.5 0.66 1.4E-05 42.2 19.6 191 22-230 260-486 (764)
402 PF05096 Glu_cyclase_2: Glutam 96.5 0.28 6.1E-06 37.8 15.5 130 43-230 34-166 (264)
403 PF14870 PSII_BNR: Photosynthe 96.5 0.33 7.3E-06 38.6 27.7 225 9-255 15-255 (302)
404 PHA02713 hypothetical protein; 96.4 0.26 5.7E-06 43.2 15.1 63 157-224 463-536 (557)
405 COG5290 IkappaB kinase complex 96.3 0.65 1.4E-05 41.3 16.5 98 147-246 247-350 (1243)
406 PF15390 DUF4613: Domain of un 96.3 0.32 6.8E-06 41.6 14.3 124 145-272 55-191 (671)
407 PF10168 Nup88: Nuclear pore c 96.3 0.26 5.7E-06 44.2 14.6 92 53-178 85-181 (717)
408 TIGR02604 Piru_Ver_Nterm putat 96.2 0.57 1.2E-05 38.7 15.9 66 11-79 14-95 (367)
409 KOG4441 Proteins containing BT 96.1 0.44 9.6E-06 41.8 15.0 193 21-223 332-548 (571)
410 PF10168 Nup88: Nuclear pore c 96.1 1 2.3E-05 40.6 18.8 76 10-85 84-182 (717)
411 PF14781 BBS2_N: Ciliary BBSom 96.0 0.23 5.1E-06 33.7 10.0 96 152-252 4-116 (136)
412 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 0.2 4.4E-06 41.6 11.5 87 6-92 303-408 (415)
413 COG3204 Uncharacterized protei 95.9 0.63 1.4E-05 36.3 16.6 155 49-256 82-256 (316)
414 KOG4460 Nuclear pore complex, 95.9 0.53 1.2E-05 39.7 13.3 96 54-182 105-204 (741)
415 COG3823 Glutamine cyclotransfe 95.8 0.47 1E-05 35.0 11.5 82 21-102 55-139 (262)
416 PF10313 DUF2415: Uncharacteri 95.8 0.071 1.5E-06 28.1 5.5 31 192-222 1-34 (43)
417 PF07569 Hira: TUP1-like enhan 95.7 0.14 2.9E-06 38.8 9.1 72 154-226 18-100 (219)
418 KOG3630 Nuclear pore complex, 95.7 0.2 4.4E-06 46.0 11.2 99 147-250 156-261 (1405)
419 PF10313 DUF2415: Uncharacteri 95.7 0.07 1.5E-06 28.1 5.2 31 147-177 1-34 (43)
420 KOG3630 Nuclear pore complex, 95.5 0.32 6.9E-06 44.9 11.7 180 16-208 47-260 (1405)
421 TIGR02276 beta_rpt_yvtn 40-res 95.5 0.14 2.9E-06 26.9 6.3 41 201-241 1-42 (42)
422 PHA02713 hypothetical protein; 95.4 1.8 3.8E-05 38.2 19.9 83 169-255 433-524 (557)
423 PRK13684 Ycf48-like protein; P 95.2 1.4 3.1E-05 35.9 16.2 151 10-175 172-330 (334)
424 PHA03098 kelch-like protein; P 95.2 1.4 3.1E-05 38.6 14.8 66 157-225 389-468 (534)
425 TIGR02276 beta_rpt_yvtn 40-res 95.1 0.17 3.8E-06 26.4 5.9 40 62-101 1-41 (42)
426 TIGR03074 PQQ_membr_DH membran 95.1 2.6 5.7E-05 38.5 23.2 73 22-94 194-290 (764)
427 PF07569 Hira: TUP1-like enhan 95.1 0.29 6.3E-06 37.0 8.9 65 18-83 18-96 (219)
428 KOG1916 Nuclear protein, conta 95.0 0.014 3.1E-07 51.7 2.0 174 6-226 128-328 (1283)
429 PF07250 Glyoxal_oxid_N: Glyox 95.0 0.61 1.3E-05 35.8 10.4 145 34-186 48-207 (243)
430 KOG1900 Nuclear pore complex, 94.8 0.81 1.7E-05 43.0 12.3 162 51-222 77-273 (1311)
431 PF14583 Pectate_lyase22: Olig 94.8 1.9 4.1E-05 35.4 16.9 158 38-250 16-205 (386)
432 PF11715 Nup160: Nucleoporin N 94.8 0.27 5.8E-06 43.2 9.3 75 156-230 156-257 (547)
433 PF07995 GSDH: Glucose / Sorbo 94.7 1.9 4.1E-05 35.1 13.6 103 148-252 3-133 (331)
434 PF14761 HPS3_N: Hermansky-Pud 94.7 1.3 2.9E-05 33.0 13.4 97 159-259 29-161 (215)
435 PRK10115 protease 2; Provision 94.6 3.4 7.3E-05 37.5 27.1 99 12-112 128-241 (686)
436 COG4590 ABC-type uncharacteriz 94.5 0.41 8.8E-06 39.7 8.8 170 48-228 216-393 (733)
437 KOG4499 Ca2+-binding protein R 94.5 1.5 3.4E-05 33.1 17.8 142 52-201 108-263 (310)
438 PF03088 Str_synth: Strictosid 94.5 0.71 1.5E-05 29.1 8.8 46 209-254 33-78 (89)
439 PF14781 BBS2_N: Ciliary BBSom 94.5 1 2.2E-05 30.7 10.7 87 14-102 2-101 (136)
440 PF11715 Nup160: Nucleoporin N 94.2 0.53 1.1E-05 41.4 9.9 73 20-92 156-258 (547)
441 PF08728 CRT10: CRT10; InterP 94.2 4 8.6E-05 36.6 17.7 145 22-175 49-245 (717)
442 PF14727 PHTB1_N: PTHB1 N-term 94.2 2.9 6.4E-05 35.1 17.9 148 63-220 36-203 (418)
443 PF10214 Rrn6: RNA polymerase 94.2 4.6 0.0001 37.2 18.7 97 146-243 145-257 (765)
444 KOG2377 Uncharacterized conser 94.1 2.4 5.3E-05 35.4 12.3 107 144-252 64-173 (657)
445 PF14761 HPS3_N: Hermansky-Pud 94.0 1.9 4E-05 32.2 15.7 151 66-220 30-213 (215)
446 TIGR03118 PEPCTERM_chp_1 conse 94.0 2.4 5.3E-05 33.5 24.5 223 13-242 25-307 (336)
447 PF08801 Nucleoporin_N: Nup133 93.5 4.2 9E-05 34.5 15.6 31 192-222 190-220 (422)
448 KOG1983 Tomosyn and related SN 93.4 5.4 0.00012 37.8 14.9 31 11-41 36-66 (993)
449 PHA02790 Kelch-like protein; P 93.3 5 0.00011 34.7 17.4 63 21-85 271-342 (480)
450 KOG1900 Nuclear pore complex, 93.3 0.94 2E-05 42.6 9.7 149 29-177 96-273 (1311)
451 PF05694 SBP56: 56kDa selenium 93.2 4.4 9.5E-05 33.9 24.0 225 21-251 86-392 (461)
452 KOG2377 Uncharacterized conser 92.9 4.9 0.00011 33.7 13.8 152 14-178 26-187 (657)
453 KOG3616 Selective LIM binding 92.9 0.24 5.3E-06 43.6 5.4 95 147-248 15-113 (1636)
454 PF13449 Phytase-like: Esteras 92.6 4.8 0.0001 32.7 17.7 102 148-250 86-232 (326)
455 KOG2247 WD40 repeat-containing 92.5 0.013 2.7E-07 48.4 -2.5 138 54-248 36-175 (615)
456 PF03022 MRJP: Major royal jel 92.3 4.9 0.00011 32.0 17.0 192 12-209 2-253 (287)
457 KOG2247 WD40 repeat-containing 92.2 0.034 7.4E-07 46.0 -0.5 175 16-201 123-305 (615)
458 PRK13684 Ycf48-like protein; P 92.1 5.7 0.00012 32.4 25.2 105 146-256 172-282 (334)
459 COG4257 Vgb Streptogramin lyas 92.1 4.7 0.0001 31.4 20.8 219 13-248 64-291 (353)
460 PF12657 TFIIIC_delta: Transcr 92.0 2 4.4E-05 31.1 8.6 31 54-84 87-123 (173)
461 PF07676 PD40: WD40-like Beta 91.8 1 2.2E-05 23.1 5.2 31 49-79 5-38 (39)
462 COG5167 VID27 Protein involved 91.6 0.69 1.5E-05 39.0 6.2 59 23-82 574-632 (776)
463 KOG1916 Nuclear protein, conta 91.5 0.17 3.7E-06 45.4 2.9 69 12-81 182-264 (1283)
464 PF10214 Rrn6: RNA polymerase 91.3 12 0.00026 34.6 16.8 93 11-104 146-257 (765)
465 PF01011 PQQ: PQQ enzyme repea 90.7 0.91 2E-05 23.2 4.2 30 205-234 2-31 (38)
466 PF07676 PD40: WD40-like Beta 90.5 1.4 3.1E-05 22.5 5.4 29 145-173 7-38 (39)
467 PF13449 Phytase-like: Esteras 90.2 8.8 0.00019 31.2 16.3 105 10-115 19-168 (326)
468 KOG4460 Nuclear pore complex, 90.2 3.3 7.2E-05 35.3 8.9 77 11-87 104-203 (741)
469 COG5276 Uncharacterized conser 90.2 7.9 0.00017 30.6 22.2 161 52-227 86-247 (370)
470 smart00564 PQQ beta-propeller 89.5 1.2 2.6E-05 21.6 4.0 25 205-229 8-32 (33)
471 TIGR03606 non_repeat_PQQ dehyd 89.2 13 0.00029 31.7 15.9 63 141-203 24-90 (454)
472 KOG1897 Damage-specific DNA bi 88.8 20 0.00044 33.4 24.7 104 149-256 777-892 (1096)
473 PF12657 TFIIIC_delta: Transcr 88.6 3.5 7.6E-05 29.9 7.4 31 147-177 86-122 (173)
474 PF01011 PQQ: PQQ enzyme repea 88.5 1.7 3.7E-05 22.2 4.2 30 66-95 2-31 (38)
475 PF14269 Arylsulfotran_2: Aryl 88.3 12 0.00026 30.1 14.3 71 12-82 145-220 (299)
476 PF14727 PHTB1_N: PTHB1 N-term 88.2 15 0.00032 31.1 19.7 58 23-81 146-203 (418)
477 COG5290 IkappaB kinase complex 88.1 12 0.00026 34.0 11.1 60 55-114 249-316 (1243)
478 PF08728 CRT10: CRT10; InterP 87.9 3.8 8.3E-05 36.8 8.2 80 2-81 155-245 (717)
479 PRK14131 N-acetylneuraminic ac 87.8 15 0.00032 30.7 16.4 53 21-73 84-149 (376)
480 KOG3522 Predicted guanine nucl 87.5 6.2 0.00013 35.8 9.1 81 143-227 623-703 (925)
481 COG4590 ABC-type uncharacteriz 87.4 17 0.00036 30.8 11.4 100 157-257 279-382 (733)
482 PF10395 Utp8: Utp8 family; I 87.2 22 0.00047 31.9 14.3 197 10-209 129-344 (670)
483 TIGR03606 non_repeat_PQQ dehyd 86.7 19 0.00041 30.8 28.0 109 6-114 25-166 (454)
484 PF07250 Glyoxal_oxid_N: Glyox 86.7 3 6.4E-05 32.1 6.2 82 171-255 49-140 (243)
485 PLN00033 photosystem II stabil 86.0 20 0.00042 30.2 17.8 148 10-173 238-396 (398)
486 KOG3616 Selective LIM binding 85.4 28 0.00062 31.6 12.2 35 52-86 14-48 (1636)
487 KOG2280 Vacuolar assembly/sort 85.0 29 0.00064 31.4 14.7 53 192-244 217-271 (829)
488 KOG3611 Semaphorins [Signal tr 85.0 12 0.00027 34.0 10.0 77 2-78 399-489 (737)
489 PF01731 Arylesterase: Arylest 84.6 7.7 0.00017 24.3 6.6 50 31-83 35-85 (86)
490 PF14269 Arylsulfotran_2: Aryl 84.3 20 0.00043 28.8 17.0 73 148-220 145-219 (299)
491 PF05935 Arylsulfotrans: Aryls 84.0 27 0.0006 30.2 15.2 190 20-219 113-365 (477)
492 KOG1520 Predicted alkaloid syn 83.9 23 0.0005 29.2 12.2 155 15-209 69-236 (376)
493 PHA02790 Kelch-like protein; P 82.8 31 0.00067 30.0 14.9 91 157-253 362-456 (480)
494 TIGR03547 muta_rot_YjhT mutatr 82.7 25 0.00055 28.8 15.6 53 21-73 63-128 (346)
495 PF10433 MMS1_N: Mono-function 82.5 33 0.00071 30.0 22.6 233 19-263 219-477 (504)
496 TIGR02171 Fb_sc_TIGR02171 Fibr 81.2 18 0.0004 33.5 9.5 85 161-249 321-415 (912)
497 PF10433 MMS1_N: Mono-function 81.2 37 0.0008 29.7 25.0 84 155-242 219-309 (504)
498 COG1520 FOG: WD40-like repeat 80.8 31 0.00068 28.6 22.6 194 24-231 70-278 (370)
499 PLN02193 nitrile-specifier pro 80.6 37 0.00081 29.4 22.3 68 157-226 328-415 (470)
500 PRK10115 protease 2; Provision 80.2 48 0.001 30.4 28.2 199 14-224 175-397 (686)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-46 Score=278.72 Aligned_cols=281 Identities=22% Similarity=0.354 Sum_probs=234.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.||.++|.|+.|+|+|+.|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||.+++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEE-e-eCCCceEEEEec-----CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 85 AQLFTF-N-FDSPARSVDFAV-----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 85 ~~~~~~-~-~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
+++-.- . |...|.+++|.| ..+.++.++. ++.+.+|++. .+..+..+.+|..+|+|++|-.+
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk-----Dg~vrIWd~~------~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK-----DGSVRIWDTK------LGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCccceecccC-----CCCEEEEEcc------CceEEEEeccCccceEEEEEcCC
Confidence 876543 3 888999999987 4556666654 7788888875 34688899999999999999754
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeecc---------------------------------------------------
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDK--------------------------------------------------- 186 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------------------- 186 (305)
| +|++|+.|++|++|+...|...+.+..
T Consensus 259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 4 799999999999999876554332211
Q ss_pred -------------------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925 187 -------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (305)
Q Consensus 187 -------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 240 (305)
..+|..-|+.+.|+||++++|+++.|..|++||.++|+.+.+|+ |-.+|..++|
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 23688899999999999999999999999999999999999999 9999999999
Q ss_pred cCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccccccccccc----cccccCCCCceEEEEE
Q 021925 241 SPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIYD----DLLNFDAGPQHFIFYF 302 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 302 (305)
+.|.++|++|+.|.. +++|+.....+.+.+-...+..|-.+ --..-..+.+..++.+
T Consensus 418 saDsRLlVS~SkDsT-----LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 418 SADSRLLVSGSKDST-----LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred ccCccEEEEcCCCce-----EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 999999999999998 77777777777666665555444331 1222334455555443
No 2
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-44 Score=256.66 Aligned_cols=277 Identities=51% Similarity=0.831 Sum_probs=257.8
Q ss_pred CCceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 1 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
|||+.|+||+.+++.+.++.+|.+|.+++.|.+..+|-..+|+.+.++.+|.+.|+|++...+.+++++|+.|.++++||
T Consensus 1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 89999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
+++|+++..++.+.+|..+.|++++++++...+..+.....+.+.++..... ....++...+..+.+.++.+.|.|-++
T Consensus 81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 9999999999999999999999999999999999999999999999886653 334566888999999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 239 (305)
+|++|.+||.|.+||+++++...... ..|...|+.++++||..++++++.|.+-++||.++.+.++++....||++.+
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeech--hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 99999999999999999986554432 2688899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccc
Q 021925 240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSA 279 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (305)
++|....++.|++...+.+.+..-....++.+++++...+
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE 278 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE 278 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence 9999999999999999999999988888999998876533
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-45 Score=278.73 Aligned_cols=243 Identities=21% Similarity=0.305 Sum_probs=225.9
Q ss_pred eEecccccceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
.+|.||.+.|.++.|+|. +..+|||+.||++++|++++..++..+.+|...|..++|+|+|++|+|++.|.+-++||+
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc
Confidence 468999999999999995 679999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 82 ETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 82 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
+++..+.... |...|.+++|.++|.++++++- +....+|++. .+.++..+.+|..+|.++.|+|+|..
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl-----D~~~RvWDlR------tgr~im~L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL-----DSLGRVWDLR------TGRCIMFLAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred ccchhhHhhcccccccceeEecCCCceeeccCc-----cchhheeecc------cCcEEEEecccccceeeEeECCCceE
Confidence 9998776665 8999999999999999999874 5666778875 56889999999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
||||+.|++++|||++..+.+..+. +|..-|+.+.|+| .|.+|+|++.|+++++|..++..+++++. |+..|-++
T Consensus 360 lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 360 LATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL 436 (459)
T ss_pred EeecCCCCcEEEeeecccccceecc---cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence 9999999999999999999988887 8999999999998 78899999999999999999999999998 99999999
Q ss_pred EecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 239 TMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
+++|+++.+++++-|.. +++|.
T Consensus 437 Dis~d~~~i~t~s~DRT-----~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRT-----IKLWR 458 (459)
T ss_pred EeccCCceEEEeccCce-----eeecc
Confidence 99999999999999987 66663
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-44 Score=268.62 Aligned_cols=249 Identities=24% Similarity=0.366 Sum_probs=209.2
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-EEecCCCcceEEEEEcC-----CCcEEEEEeCCCcEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAK 77 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~i~~~~-----~~~~l~s~~~dg~v~ 77 (305)
.+.+||...|.|++|+|||+.||+|+.||+|++||..+|+++ ..+.+|...|++++|.| ..++|++++.||.++
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr 230 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR 230 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence 357899999999999999999999999999999999988765 67899999999999976 567999999999999
Q ss_pred EEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEE-------------EEEe----------------
Q 021925 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH-------------VKRI---------------- 127 (305)
Q Consensus 78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------------- 127 (305)
|||+..++++..+. |..+|+|+.|--++.+...+-+..+.++.... +..+
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 99999998888877 88899999987655444443332222111100 0000
Q ss_pred --------------------------------------ecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925 128 --------------------------------------ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (305)
Q Consensus 128 --------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 169 (305)
.........+++..+.+|...|+.+.||||++++|+++-|..
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 000001223456677899999999999999999999999999
Q ss_pred EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEE
Q 021925 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVC 248 (305)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 248 (305)
|++||.++|+.+..++ +|-..|..++|+.|.++|++|+.|.++++||+++.+....+. |...|.++.|+|||..++
T Consensus 391 VkLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred eeeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 9999999999999998 899999999999999999999999999999999999998888 999999999999999999
Q ss_pred EeeCCcE
Q 021925 249 IGEPQTI 255 (305)
Q Consensus 249 ~~~~~~~ 255 (305)
+|+.|..
T Consensus 468 sggkdkv 474 (480)
T KOG0271|consen 468 SGGKDKV 474 (480)
T ss_pred cCCCceE
Confidence 9998887
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-44 Score=271.11 Aligned_cols=255 Identities=24% Similarity=0.313 Sum_probs=228.1
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEEEecCCCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
|-+.+|..+.|++|++.|+||+.+|.+++|+.++...+.++.+|.+.|.++.|+|. +..++||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999995 6789999999999999999988
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
++..+. |...|..++|+|+|+++.+++- +..-.+|++.. .......++|...|.+++|+|||..+++|
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~Tasf-----D~tWRlWD~~t------k~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASF-----DSTWRLWDLET------KSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeeccc-----ccchhhccccc------chhhHhhcccccccceeEecCCCceeecc
Confidence 888887 8899999999999999999863 55666666643 35566678999999999999999999999
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC-
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP- 242 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~- 242 (305)
+.|..-+|||+++++++..+. +|..+|.+++|+|+|..|||||.|++++|||++..+++.++. |..-|+.|.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEec---ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc
Confidence 999999999999999999998 899999999999999999999999999999999999988888 889999999999
Q ss_pred CCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccccc
Q 021925 243 LLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASR 281 (305)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (305)
.|.+|++|+.|+. +++|....-.....+.+.+.+
T Consensus 399 ~g~fL~TasyD~t-----~kiWs~~~~~~~ksLaGHe~k 432 (459)
T KOG0272|consen 399 EGYFLVTASYDNT-----VKIWSTRTWSPLKSLAGHEGK 432 (459)
T ss_pred CCeEEEEcccCcc-----eeeecCCCcccchhhcCCccc
Confidence 7888999999998 666666555555555555443
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-41 Score=241.40 Aligned_cols=253 Identities=23% Similarity=0.315 Sum_probs=221.8
Q ss_pred EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcC-----CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFAD-----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
++++|.+.|+.++..+. ...+++++.|.++.+|++. .|.+++.+.+|+..|..+..++||++.++++.|+++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 58899999999999986 5688999999999999875 36788999999999999999999999999999999999
Q ss_pred EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--CCCeeEEEEc
Q 021925 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWG 155 (305)
Q Consensus 79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~ 155 (305)
||+.+++....+. |...|.+++++++++.++.++. +..+.+|++.. .+......+ .+.|.++.|+
T Consensus 90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr-----DkTiklwnt~g-------~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR-----DKTIKLWNTLG-------VCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred EEecCCcEEEEEEecCCceEEEEecCCCceeecCCC-----cceeeeeeecc-------cEEEEEecCCCcCcEEEEEEc
Confidence 9999998888877 8889999999999999999876 66677777642 333333333 7889999999
Q ss_pred CC--CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC
Q 021925 156 PL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (305)
Q Consensus 156 ~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 233 (305)
|+ ..+|++++.|++|++||+++.+....+. +|.+.++.+++||||...++|+.||.+.+||++.++.+..+.+..
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~---gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~ 234 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFI---GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD 234 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcchhhccc---cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC
Confidence 98 6799999999999999999988888777 899999999999999999999999999999999999999999999
Q ss_pred CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccc
Q 021925 234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCS 278 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (305)
.|.+++|+|+.-.|+.+.+.+ +++|++........+.-.
T Consensus 235 ~v~sl~fspnrywL~~at~~s------IkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAATATS------IKIWDLESKAVVEELKLD 273 (315)
T ss_pred eEeeEEecCCceeEeeccCCc------eEEEeccchhhhhhcccc
Confidence 999999999998898888777 677777666665554443
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.3e-40 Score=237.61 Aligned_cols=257 Identities=18% Similarity=0.257 Sum_probs=222.7
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.|+++|+|+.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 46999999999999999999999999999999999998888888888889999999999999999999999999999985
Q ss_pred C--C----eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 84 G--A----QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 84 ~--~----~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
. + ....+. +.+.+.++.|.+++.++..+++ ....+|++ +.++.+..+.+|.+.|.+++++|
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------~TCalWDi------e~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------MTCALWDI------ETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceEecCCC------ceEEEEEc------ccceEEEEecCCcccEEEEecCC
Confidence 5 2 222233 7888999999997777766664 44556666 45688899999999999999999
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee---C
Q 021925 157 -LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---E 232 (305)
Q Consensus 157 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~ 232 (305)
+++.+++|+-|+..++||++.+.+++.+. +|+..|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+ .
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeec---ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 89999999999999999999999999998 8999999999999999999999999999999999999998884 4
Q ss_pred CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccccc
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSAS 280 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (305)
.+|++++||..|++|++|..|.. ..+|+.......-.+..+.+
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~-----c~vWDtlk~e~vg~L~GHeN 316 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFT-----CNVWDTLKGERVGVLAGHEN 316 (343)
T ss_pred CCceeEEEcccccEEEeeecCCc-----eeEeeccccceEEEeeccCC
Confidence 57999999999999999977776 66777655555444444433
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-39 Score=234.21 Aligned_cols=239 Identities=20% Similarity=0.293 Sum_probs=204.9
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.||...|..+..++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|++|++|+....
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred CeeEEEee--CCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 85 AQLFTFNF--DSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 85 ~~~~~~~~--~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
........ ...|.|+.|+|. +.+++.++. +..+++|++.. .+....+.+|.+.++.+.+||||..
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----DktvKvWnl~~------~~l~~~~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASW-----DKTVKVWNLRN------CQLRTTFIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC-----CceEEEEccCC------cchhhccccccccEEEEEECCCCCE
Confidence 44433333 678999999998 455555543 67788888853 3566778899999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee---------
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------- 231 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------- 231 (305)
.++|+.||.+.+||++.++.+..+. +...|.+++|+|+.-.|+.+. +..|+|||+.++..+..+..
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred EecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccccccc
Confidence 9999999999999999999988885 899999999999976666555 55599999999988877651
Q ss_pred -CCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 232 -ERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 232 -~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
+....+++|+++|..|++|-.++.+.++
T Consensus 282 ~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred CCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 1224678999999999999888874433
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-39 Score=250.58 Aligned_cols=241 Identities=26% Similarity=0.481 Sum_probs=215.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
..|++++|+.+|..||+|+.||.++||+. +|..+.++..|+++|.++.|+.+|.+|++++.||++.+||..+++..+.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 57999999999999999999999999995 58888999999999999999999999999999999999999999999998
Q ss_pred eeCCCc-eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925 91 NFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (305)
Q Consensus 91 ~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 169 (305)
.....+ ..+.|..+..+.....+ +.+.+..+. ...++..+.+|.++|.++.|+|.+.+|++++.|++
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td------~~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTD------GCIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred eeccCCccceEEecCceEeecCCC------ceEEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 855555 78999988888877764 344455443 34678888999999999999999999999999999
Q ss_pred EEEEeCCCCcEeeeeccccCCccceEEEEEcCCC---------CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADG---------SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (305)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 239 (305)
++||++........+. .|...|..+.|+|.| ..+++++.|++|++||+..+.++..+. |..+|.+++
T Consensus 383 lkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence 9999999888888887 899999999999964 469999999999999999999999995 999999999
Q ss_pred ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
|+|+|+++++|+-++. +.+|+.....+.
T Consensus 460 fS~~g~ylAsGs~dg~-----V~iws~~~~~l~ 487 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGC-----VHIWSTKTGKLV 487 (524)
T ss_pred ecCCCcEEEecCCCCe-----eEeccccchhee
Confidence 9999999999999998 777777666655
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.7e-40 Score=269.35 Aligned_cols=244 Identities=22% Similarity=0.364 Sum_probs=217.1
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-------------------------------eeeEEecCCCcc
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------------------------------ERLGTYRGHNGA 54 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-------------------------------~~~~~~~~~~~~ 54 (305)
+..-...++|..|++|++.||.|-.|..|++|.+... ....++.+|.++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 3344567999999999999999999999999987621 123346789999
Q ss_pred eEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC
Q 021925 55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133 (305)
Q Consensus 55 v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (305)
|.+..|+|+.++|+++|.|+++++|.+.+..++..++ +..+|..+.|+|-|.++++++. +....+|....
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~-----D~tArLWs~d~---- 524 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH-----DQTARLWSTDH---- 524 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC-----Cceeeeeeccc----
Confidence 9999999999999999999999999999999988888 8889999999999999999976 44445565543
Q ss_pred CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (305)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 213 (305)
..+.+.+.+|.+.+.|+.|+|+..|+++|+.|.+|++||..+|..++.+. +|.++|++++|+|+|++|++|+.||
T Consensus 525 --~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 525 --NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred --CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEcCCCceEeecccCC
Confidence 47888999999999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 214 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
.|.+||+.+++++.++. |.+.|.++.|+.+|..||+|+.|.. +.+|++..
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns-----V~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS-----VRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe-----EEEEEchh
Confidence 99999999999998887 8889999999999999999999987 66665543
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=225.31 Aligned_cols=229 Identities=21% Similarity=0.361 Sum_probs=200.9
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+.+|++.|+++.|..+|+.+++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 3689999999999999999999999999999999999876666665 889999999999999999999999999999998
Q ss_pred CCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 84 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
..+...+- ....+.++...|+|.+++.+.+ .+...+|++.........+++.+++.|.+.+..+.+||++++|
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn-----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANN-----KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecC-----CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 76655544 5568899999999999999876 5667778887766667778899999999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925 162 ISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 239 (305)
++++.|.+++||+..+. +....+. +|...+..++||.||.+|++|+.|+.+++||++.++.++.+. |..+..|++
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~---gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLT---GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEee---cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 99999999999999887 4444444 899999999999999999999999999999999999999887 555556665
Q ss_pred ec
Q 021925 240 MS 241 (305)
Q Consensus 240 ~~ 241 (305)
..
T Consensus 308 ln 309 (311)
T KOG0315|consen 308 LN 309 (311)
T ss_pred ee
Confidence 43
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-38 Score=258.64 Aligned_cols=205 Identities=29% Similarity=0.543 Sum_probs=193.4
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+.||.++|..+.|+|+.++|+++++|++||+|.+.+...+..+++|..+|+++.|+|.|-++||+|.|++-++|....
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
.++...+. +-+.+.|+.|+|+..++++++. +..+++|+.. .+..++.+.+|.++|.+++|||+|++|+
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-----D~tVRlWDv~------~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-----DRTVRLWDVS------TGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCC-----CceEEEEEcC------CCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 88888877 8889999999999999999976 6778888875 4567999999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+|+.||.|.+||+.+++.+..+. +|.+.|.++.|+.+|..||+|+.|.+|++||+..
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ecccCCcEEEEEcCCCcchhhhh---cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999888 8999999999999999999999999999999864
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=217.01 Aligned_cols=251 Identities=16% Similarity=0.212 Sum_probs=212.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
+++..++.|+.+...|+++.||+++ .-.||+||+.++. ++.++.+|...|+.+.|..+|+.+++||+||+++|||++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 4555677899999999999999887 5589999998865 688999999999999999999999999999999999999
Q ss_pred CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
...+...+++..+|.++..+|+..-++++.. .+.+.+|++....-. ...+......|.++...|+|.+++
T Consensus 114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~-----~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-----SGNIRVWDLGENSCT-----HELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred CcccchhccCCCCcceEEecCCcceEEeecC-----CCcEEEEEccCCccc-----cccCCCCCcceeeEEEcCCCcEEE
Confidence 9888888999999999999999888888876 778889988754211 122233456789999999999999
Q ss_pred EeeCCCcEEEEeCCCCcE---eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeE
Q 021925 163 SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNA 237 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~ 237 (305)
.+...|..++|++-+.+. +..+.....|+..+..+.+|||+++||++|.|.+++||+.++. +....+. |+..++.
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD 263 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence 999999999999976432 2222333489999999999999999999999999999999988 4445555 7789999
Q ss_pred EEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 238 VTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
++||.||++|++|++|.. .++|+......
T Consensus 264 c~FS~dg~YlvTassd~~-----~rlW~~~~~k~ 292 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSDHT-----ARLWDLSAGKE 292 (311)
T ss_pred eeeccCccEEEecCCCCc-----eeecccccCce
Confidence 999999999999999987 78888766553
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.9e-36 Score=217.52 Aligned_cols=238 Identities=21% Similarity=0.330 Sum_probs=212.2
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
....|..++|+|.|+++|+|+.|+...||++.+. ...+.+.+|.+.+.|+.|.+|+ .|++++.|.+..+||++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE 174 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc
Confidence 3567889999999999999999999999998854 3456788999999999999855 78999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
+++.+..+. |.+.|.++.++| +++.++.++- +....+|+++ .+...+.+.+|.+.|++++|.|+|.-
T Consensus 175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c-----D~~aklWD~R------~~~c~qtF~ghesDINsv~ffP~G~a 243 (343)
T KOG0286|consen 175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC-----DKSAKLWDVR------SGQCVQTFEGHESDINSVRFFPSGDA 243 (343)
T ss_pred cceEEEEecCCcccEEEEecCCCCCCeEEeccc-----ccceeeeecc------CcceeEeecccccccceEEEccCCCe
Confidence 999999998 899999999999 7777777654 5666777775 35789999999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 239 (305)
+++|+.|++.++||++..+.+..+... ....+|++++||..|++|++|..|.++.+||.-.++.+..+. |+.+|.|+.
T Consensus 244 fatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG 322 (343)
T ss_pred eeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence 999999999999999999998888632 456789999999999999999999999999999999998888 999999999
Q ss_pred ecCCCCcEEEeeCCcEEEEEEeehh
Q 021925 240 MSPLLDHVCIGEPQTIKFMLLVYLF 264 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~ 264 (305)
.+|||..+++|+-|.. +++|
T Consensus 323 ~s~DG~av~TgSWDs~-----lriW 342 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDST-----LRIW 342 (343)
T ss_pred ECCCCcEEEecchhHh-----eeec
Confidence 9999999999998876 5555
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=230.87 Aligned_cols=237 Identities=22% Similarity=0.355 Sum_probs=216.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.|+||++.|.+++|+..|+++|+++.|-.+++||.++ .++++.+.+|+..|.++.|-|.|.++++++.|.+|+.|++.+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 4889999999999999999999999999999999887 567788889999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-----
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----- 157 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 157 (305)
+.++.++. ++..+..+..+.||.+++.++. +..+.+|.... .++...+..|.-+|.+++|-|.
T Consensus 225 g~cv~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~t------~~~k~~lR~hEh~vEci~wap~~~~~~ 293 (406)
T KOG0295|consen 225 GYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVAT------KQCKAELREHEHPVECIAWAPESSYPS 293 (406)
T ss_pred ceeEEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEecc------chhhhhhhccccceEEEEecccccCcc
Confidence 99999998 7788999999999999999886 66777777643 3456678899999999999763
Q ss_pred ----------CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 158 ----------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 158 ----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
+.++.+++.|++|++||+.++.++.++. +|...|..++|+|.|++|+++..|+++++||++++++++
T Consensus 294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred hhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 2589999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred EEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 228 TYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 228 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.+. |+.-+++++|+.+..++++|+-+-.
T Consensus 371 ~~~ah~hfvt~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 371 TLEAHEHFVTSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred ccCCCcceeEEEecCCCCceEEeccccce
Confidence 998 8888999999999999999987765
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=245.23 Aligned_cols=242 Identities=20% Similarity=0.321 Sum_probs=209.5
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
..+||...+++++++|||+++|||+.||.|+|||..++-+..++..|+..|+.+.|+..|+.+++++.||+|+.||+...
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEeeCCCc--eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 85 AQLFTFNFDSPA--RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 85 ~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+...++..+.++ .|++..|.|.++++++.+ .-.+.+|.. +.++.+..+.+|.++|.+++|+|.+..|+
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d----~F~IfvWS~------qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD----SFEIFVWSV------QTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccc----eEEEEEEEe------ecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 999998866654 577888889998888753 335566666 45688899999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----------
Q 021925 163 SAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----------- 230 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------- 230 (305)
+++.|.+|++||+-.. ..+.+++ +...+..++|+|+|+.|++++.||.|.+||.+.+..+..+.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~ 570 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE 570 (893)
T ss_pred eccccceEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccc
Confidence 9999999999998654 3555664 77889999999999999999999999999998766553332
Q ss_pred ----------eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 231 ----------TERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 231 ----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
.....+.+++++||..|++|+..+....+.
T Consensus 571 ~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 571 TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 124578999999999999998888744333
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=240.58 Aligned_cols=241 Identities=19% Similarity=0.303 Sum_probs=212.5
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.+++|..+|+++.|+++|.++++|+.+|.|++|+.. ...++.+.+|. ..|++++|+|+...+++++.||+|+|||...
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 478999999999999999999999999999999865 44455566555 8999999999889999999999999999988
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
.+....+. +.-.|.+++|+|...++++++. +..+++|+. ..+.++..+.+|+..|..+.|+|++++|+
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasgsk-----DnlVKlWDp------rSg~cl~tlh~HKntVl~~~f~~n~N~Ll 280 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSK-----DNLVKLWDP------RSGSCLATLHGHKNTVLAVKFNPNGNWLL 280 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEccC-----CceeEeecC------CCcchhhhhhhccceEEEEEEcCCCCeeE
Confidence 87777776 7788999999999999999887 346666666 45678888999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEE
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVT 239 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~ 239 (305)
+++.|..++++|+++.+.+..++ +|...|+++.|+| ...+|.+|+.||.|..|.+...+++..+. |...|++++
T Consensus 281 t~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~ 357 (464)
T KOG0284|consen 281 TGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLA 357 (464)
T ss_pred EccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeee
Confidence 99999999999999888888887 8999999999999 56688999999999999998777777766 889999999
Q ss_pred ecCCCCcEEEeeCCcEEEEEE
Q 021925 240 MSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~ 260 (305)
|+|-|..|++|+.|....++.
T Consensus 358 ~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 358 YHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccccceeEeecCCCcceeeec
Confidence 999999999998888754443
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=220.37 Aligned_cols=244 Identities=18% Similarity=0.332 Sum_probs=218.3
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+..|+++|.+++.+|+.++++||+.|..-.+|++.+++....+.+|++.|+++.|+.+|.+||||+.+|.|+||+..+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+.....+. .-..+.=+.|+|.+.+++.++. ++.+-.|.+.. ....+.+.+|..++++-.|.|+|+.++
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~-----DGsvWmw~ip~------~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGST-----DGSVWMWQIPS------QALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecC-----CCcEEEEECCC------cceeeEecCCCCCcccccccCCCceEE
Confidence 99888886 5667788999999999998876 55555666542 266788999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeecc--------------------------------------------------------
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDK-------------------------------------------------------- 186 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------------------- 186 (305)
++..||+|++||+.+++++..+..
T Consensus 207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 999999999999999988766441
Q ss_pred ------------------------------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 187 ------------------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 187 ------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.-.|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe
Confidence 113678899999988 6799999999999999999999999998
Q ss_pred -eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 231 -TERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 231 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
|..+|.+++++|+.+++++++.|+...++
T Consensus 366 GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 366 GHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred cCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999999875544
No 19
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3e-36 Score=216.14 Aligned_cols=248 Identities=17% Similarity=0.192 Sum_probs=210.6
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE--EecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEe
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN 80 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~--~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd 80 (305)
..+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+... ...+|.+.|-.++|+| +...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4578999999999999999999999999999999998775544 3457999999999998 567899999999999999
Q ss_pred cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEee------------------------------cc
Q 021925 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA------------------------------RD 130 (305)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~ 130 (305)
++++++...+.....-..+.|+|++.+++++........-..+..... ..
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 999999999998888889999999999888765221111110000000 00
Q ss_pred cCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe
Q 021925 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 210 (305)
......+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+..--+++.+. .+.-+|+.+.|+.||++||++|
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccC
Confidence 0012457788889999999999999999999999999999999999888888887 6889999999999999999999
Q ss_pred CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 211 LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
+|..|-|=++++|..+..+.+.++...++|+|...+||-++++.
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999999999999999999999887665
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=225.17 Aligned_cols=236 Identities=21% Similarity=0.312 Sum_probs=216.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+++||.+.|.|+++.|-.+++++|+.|++++|||+.+|+...++.+|-..|..+++++...++.+++.|+.|+.||++..
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+.+..+. +-+.|.+++..|.-..+++++. +..+++|+++.. ..+..+.+|..+|.++.+.|-...+++
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~gr-----Dst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGR-----DSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCC-----cceEEEeeeccc------ceEEEecCCCCcceeEEeecCCCceEE
Confidence 9988877 8889999999999999998876 677888998643 578899999999999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 242 (305)
|+.|++|++||++.++....+. .|...|.+++.+|....+|+++.|. |+-|++..+..+..+. +..-+++++...
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred ecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc
Confidence 9999999999999999888887 7999999999999999999999875 9999999999888876 777889999998
Q ss_pred CCCcEEEeeCCcEE
Q 021925 243 LLDHVCIGEPQTIK 256 (305)
Q Consensus 243 ~~~~l~~~~~~~~~ 256 (305)
|+ ++++|++++.+
T Consensus 371 D~-v~~~G~dng~~ 383 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSI 383 (460)
T ss_pred Cc-eEEEcCCceEE
Confidence 87 66777777663
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.2e-37 Score=237.79 Aligned_cols=245 Identities=22% Similarity=0.376 Sum_probs=211.1
Q ss_pred eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
.++.||+..|+++.|.| .+.+|++++.|+.|+||++.+ +++++++.+|..+|.+++|+++|..++|+|.|+.|++||+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 36889999999999999 899999999999999999876 8899999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
++|+++..+.....+.|+.|.|++ +.++++.. +..+..|+++. ++.++.+..|-+.|..+.|-++|++
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-----d~ki~~wDiRs------~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS-----DKKIRQWDIRS------GKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecC-----CCcEEEEeccc------hHHHHHHHhhhhheeeeEEccCCce
Confidence 999999999999999999999998 55555544 56677777753 4567778889999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeecc-------------------------------------------ccCCc--cceE
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDK-------------------------------------------ETGHK--KTIT 195 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------~~~~~--~~v~ 195 (305)
+++.+.|+.++||+.+...+++.+.. ..+|. +.-.
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 99999999999999886544332110 11332 4456
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehh
Q 021925 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLF 264 (305)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~ 264 (305)
.+.|||||.+|++|+.||.+.+||.++-+.+..+. |..++..+.|+|.... +|+|+-+|. +++|
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~-----Ikiw 502 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL-----IKIW 502 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce-----eEec
Confidence 78999999999999999999999999999999998 7799999999998764 677777776 5665
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=207.40 Aligned_cols=241 Identities=20% Similarity=0.341 Sum_probs=201.6
Q ss_pred ceEecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCC---eeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925 3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG---ERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~---~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~ 77 (305)
...+++|++.+..++|+|- |..||+|+.|+.|++|+...+ .+...+ .+|+..|.+++|+|.|++|+++|.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3468999999999999997 889999999999999998743 333334 36999999999999999999999999999
Q ss_pred EEecCCC--CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 78 LWNVETG--AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 78 vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
||.-..+ +++..+. +...|.+++|+++|.++++++. +..+-+|.+. .....+....+++|...|..+.|
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-----DKSVWiWe~d---eddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-----DKSVWIWEID---EDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-----CCeEEEEEec---CCCcEEEEeeeccccccccEEEE
Confidence 9976544 5666666 8899999999999999999986 4455566655 33556788999999999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC---CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 155 GPLNRTIISAGEDAIVRIWDTET---GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
+|....|++++.|.+|++|+-.. ..+++++. +|...|.+++|++.|..|++++.|++++||...+. -...+
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~ 232 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD---GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMH 232 (312)
T ss_pred cCCcceeEEeccCCeEEEEeecCCCCeeEEEEec---CccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhc
Confidence 99999999999999999998762 45677776 88899999999999999999999999999987622 11226
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
..++..++|. ...|+++++|+.+.++
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred ccceEeeeec--ccceEeccCCCEEEEE
Confidence 7789999999 4578888888775444
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-35 Score=225.41 Aligned_cols=242 Identities=21% Similarity=0.345 Sum_probs=219.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+|..|+++|.++.|+.+|++|++++.||++.+||..+++..+.+.-|..+-.++.|-.+. .+++++.|+.|+|+.+...
T Consensus 271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCC
Confidence 467899999999999999999999999999999999999999999999988899998654 7899999999999999988
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-----
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN----- 158 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----- 158 (305)
.++.++. |.++|.++.|.|.+.+++.+++ +..+++|.... ......+..|...|..+.|+|.|
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd-----D~TlkiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSD-----DGTLKIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecC-----CCeeEeeecCC------CcchhhhhhhccceeeEeecCCCCccCC
Confidence 8888887 8999999999999999999987 67777877643 35667789999999999999975
Q ss_pred ----CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCC
Q 021925 159 ----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP 234 (305)
Q Consensus 159 ----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 234 (305)
..+++++.|++|++||+..+.++..+. .|..+|.+++|+|+|+++|+|+.||.|.+|+.++++.++.+.....
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 379999999999999999999999987 7999999999999999999999999999999999999999998888
Q ss_pred eeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925 235 VNAVTMSPLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (305)
|..++|+.+|..|.++-.++...+..+
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 999999999999999988887655443
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=233.56 Aligned_cols=240 Identities=22% Similarity=0.375 Sum_probs=207.9
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
-+.+|..+.|.|+|+.|++|+..|...+|+..+......+++|.++|.++.|++++.+++||+.+|.|++|+........
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 35679999999999999999999999999976555555667899999999999999999999999999999976544333
Q ss_pred EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
... +...|++++|+|.+..++++++ ++.+.+|+.... +....+.+|.-.|.+++|+|....+++|+.|
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~Sd-----Dg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP~kgLiasgskD 243 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSD-----DGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHPTKGLIASGSKD 243 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecC-----CCeEEEEeccCC------chhheeccCCCCcceeccCCccceeEEccCC
Confidence 333 5589999999999988888887 677888887643 4556679999999999999999999999999
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH 246 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 246 (305)
..|++||.++++++.++. +|...|..+.|+|++++|+++|.|..++++|+++.+.+..++ |...|+++.|+|-..-
T Consensus 244 nlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence 999999999999999998 899999999999999999999999999999999999999888 9999999999997665
Q ss_pred -EEEeeCCcEEEEEEee
Q 021925 247 -VCIGEPQTIKFMLLVY 262 (305)
Q Consensus 247 -l~~~~~~~~~~~~~~~ 262 (305)
+.+|+.|+....+.+.
T Consensus 321 lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ceeeccCCCceEEEecc
Confidence 5556777765544444
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-34 Score=225.47 Aligned_cols=248 Identities=22% Similarity=0.347 Sum_probs=203.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
.++.|..-|+|+.|+|||+.+|+++.||.+.+||-.+++.+..+. +|++.|.+++|+||++.+++++.|.+++|||+
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 467899999999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCCCeeEEEeeCCCce----EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 82 ETGAQLFTFNFDSPAR----SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
.+.+++.++.....+. .+.|. .+.++.+..++.+.+. +. ....+...+.+|...|+++..+|+
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~l------n~------~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYL------NP------SDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEe------cc------cCCChhheecccccceeEEEEcCC
Confidence 9999999998665543 33344 5555555544333222 22 233477889999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeee-----------ecc----------------------------------------
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKE-----------SDK---------------------------------------- 186 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~---------------------------------------- 186 (305)
+++|++|+.||.|.-||..++..-+. +..
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 99999999999999999876532211 000
Q ss_pred -----------------------------------------------------------------------ccCCccceE
Q 021925 187 -----------------------------------------------------------------------ETGHKKTIT 195 (305)
Q Consensus 187 -----------------------------------------------------------------------~~~~~~~v~ 195 (305)
...|.++++
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT 491 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence 124778999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE-Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
+++++||+.+||++...+.+.+||..+.+.... +. |...|++++|+|+..++|+|+-|...+++.+.-..
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 999999999999999999999999998876332 22 89999999999999999999999986666655443
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=214.40 Aligned_cols=251 Identities=23% Similarity=0.386 Sum_probs=207.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC-CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.+.||++.|+.+.|+|+|.++|+|+.|..|.+|+.. .-+....+++|+++|..+.|.+|++.+++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 478999999999999999999999999999999953 3455677889999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
|+....++ +..-+..+....-|..++.+.. -+..+++|+++...... ....+.+++++.|...+..+.
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs----dD~t~kl~D~R~k~~~~-------t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS----DDGTLKLWDIRKKEAIK-------TFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecC----CCceEEEEeecccchhh-------ccccceeEEEEEeccccccee
Confidence 99999888 6666777775555655555442 26778888887532211 122355788999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEEEEe---eC--C
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYV---TE--R 233 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~---~~--~ 233 (305)
+|+-|+.|++||++.+.....+. +|..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+. |. .
T Consensus 191 sggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred eccccCceeeeccccCcceEEee---cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 99999999999999999999888 99999999999999999999999999999999853 4466665 22 2
Q ss_pred CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhh
Q 021925 234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYN 274 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
....++|+|+++.+.+|+.|.. +++|+......+|.
T Consensus 268 nlL~cswsp~~~~i~ags~dr~-----vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRF-----VYVWDTTSRRILYK 303 (338)
T ss_pred hcceeeccCCCCccccccccce-----EEEeecccccEEEE
Confidence 3467799999999999999987 67776655444443
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-35 Score=206.55 Aligned_cols=248 Identities=23% Similarity=0.363 Sum_probs=219.4
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..|..|.++|.++.|+-+|++.++++.|.+|++|+...+.+++++.+|..+|..++.+.|...+++|+.|+.+.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
|+....+. |..+|..++|+.+...++.++ ++..++.|+-+. ...++++.+......|.++... +..|+
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDCRS----~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-----FDSSVRLWDCRS----RSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEecc-----ccceeEEEEccc----CCCCccchhhhhcCceeEEEec--ccEEE
Confidence 99999998 899999999999999998876 477788888765 3457889999999999999887 56799
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC--CeeEEE
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER--PVNAVT 239 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~--~v~~~~ 239 (305)
+|+.||+++.||++.|+....+. ..+|+++.|+++++..+.++.|+++++.|-.+|+.++.+. |.. .-...+
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred eeccCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 99999999999999998776653 5689999999999999999999999999999999999887 333 235667
Q ss_pred ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
++....+++.|+.||. ++.|++..+...
T Consensus 235 l~qsdthV~sgSEDG~-----Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGK-----VYFWDLVDETQI 262 (307)
T ss_pred ecccceeEEeccCCce-----EEEEEeccceee
Confidence 8888889999999998 667776655544
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=239.37 Aligned_cols=235 Identities=24% Similarity=0.439 Sum_probs=206.5
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEc-CCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.+.+|...|++++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||+++
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 35799999999999999999999999999999999 55689999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC--eeEEEEcCCCCE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRT 160 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~ 160 (305)
++++..+. +...+.+++|++++..+++++. ++.+.+|+....... ....+.++... +++++|+|++++
T Consensus 278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 278 GECVRKLKGHSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred CeEEEeeeccCCceEEEEECCCCCEEEEcCC-----CccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcE
Confidence 99999998 8889999999999999999864 677788887643211 34455555554 999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCcc---ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e-CCCe
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T-ERPV 235 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-~~~v 235 (305)
+++++.|+.+++||++.+..+..+. +|.. .+.+...++.+.++++|+.|+.|++||+.++..+..+. | ...+
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~ 425 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYT---GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAV 425 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeec---ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCce
Confidence 9999999999999999999888887 4544 44455567899999999999999999999988888887 6 6888
Q ss_pred eEEEecCCCCcEEEee
Q 021925 236 NAVTMSPLLDHVCIGE 251 (305)
Q Consensus 236 ~~~~~~~~~~~l~~~~ 251 (305)
..++++|..+++++++
T Consensus 426 ~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 426 SDLSSHPTENLIASSS 441 (456)
T ss_pred eccccCCCcCeeeecC
Confidence 9999999999999987
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=221.23 Aligned_cols=246 Identities=23% Similarity=0.279 Sum_probs=219.9
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.|.++.|+..|++|++++.|=.+++||.++.
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -CeeEEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 85 -AQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 85 -~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+++... .+...+.++.|-|.+..++.++. +..+..|+.. .+.++..+.+|...+..++.+.||..++
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr-----D~tik~We~~------tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSR-----DNTIKAWECD------TGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeeccc-----ccceeEEecc------cceeEEeccCchHhEEEEEecCCeeEEE
Confidence 333333 37888999999999999988875 6667777774 4578899999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---------------GSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
+++.|.+|++|-+.++++...+. .|+.+|-+++|.|. ++++++++.|++|++||+.++.++.
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 99999999999999998877777 79999999999873 3589999999999999999999999
Q ss_pred EEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 228 TYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 228 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
++. |...|..++|+|.|++|+++.+|+. +.+|++...
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-----lrvwdl~~~ 366 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKT-----LRVWDLKNL 366 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCc-----EEEEEeccc
Confidence 998 9999999999999999999999998 666666543
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=236.54 Aligned_cols=256 Identities=27% Similarity=0.415 Sum_probs=219.1
Q ss_pred eccc-ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec-
Q 021925 6 MKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV- 81 (305)
Q Consensus 6 l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~- 81 (305)
+.+| ...|.++.|+++|+.+++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|++||+
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 3344 7889999999999999999999999999998777 77777899999999999999999999999999999999
Q ss_pred CCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 82 ETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 82 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
..+..+.++. |...+.+++|+|+++.++.++. +..+++|++.. +++...+.+|.+.|++++|++++++
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~-----D~tvriWd~~~------~~~~~~l~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD-----DGTVRIWDVRT------GECVRKLKGHSDGISGLAFSPDGNL 302 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEecC-----CCcEEEEeccC------CeEEEeeeccCCceEEEEECCCCCE
Confidence 4457778776 9999999999999988888876 78888898864 6889999999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC---C
Q 021925 161 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER---P 234 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~---~ 234 (305)
|++++.|+.|++||+.++. +...+....... +++++.|+|++.++++++.|+.+++||++.++.+..+. +.. .
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRC 381 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCccee
Confidence 9999999999999999998 456665332333 69999999999999999999999999999999888887 443 4
Q ss_pred eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccc
Q 021925 235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCS 278 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (305)
+.+...++.++++++|+.++. +++|+.........+...
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~-----v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGS-----VYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EecccccCCCCeEEEEeCCce-----EEEEeCCccchhhhhcCC
Confidence 455567889999999999998 677776654444444443
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=235.10 Aligned_cols=244 Identities=22% Similarity=0.318 Sum_probs=214.3
Q ss_pred CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe----eeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcE
Q 021925 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA 76 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v 76 (305)
...++.||++.|.++....+|-+|+||+.|.++++|.++++. ++....+|...|.+++++..+ .+|+++|.|+++
T Consensus 357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 345789999999999977788899999999999999885443 455667899999999998754 689999999999
Q ss_pred EEEecCCCCe---eEEE-------eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925 77 KLWNVETGAQ---LFTF-------NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (305)
Q Consensus 77 ~vwd~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
++|++...+. ...+ .|+..|.+++++|+.+++++++. +...++|++. .......+.+|.
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-----DktaKiW~le------~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ-----DKTAKIWDLE------QLRLLGVLSGHT 505 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc-----ccceeeeccc------CceEEEEeeCCc
Confidence 9999876221 1111 27889999999999999999986 6666777775 457788999999
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 226 (305)
..+.++.|+|..+.++|+|.|++|+||.+.+..+++++. +|...|..+.|-.+|+.|++++.||-|++|++++++++
T Consensus 506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred cceEEEEeccccceeEeccCCceEEEEEeccceeeeeec---CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 227 KTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 227 ~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
.++. |...|++++.+|.+.++++|++|+..+++
T Consensus 583 ~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 583 MTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred hhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 9998 99999999999999999999999874433
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.2e-33 Score=220.14 Aligned_cols=237 Identities=31% Similarity=0.494 Sum_probs=207.5
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+++|.++|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.||.|++||++++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 46799999999999999999999999999999999998888888899999999999999999999999999999999988
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+.+..+. +...+.++.+++++.+++++.. .+.+.++++. ..+....+..|...+.+++|+|+++++++
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecC-----CCeEEEEECC------CcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 7777776 5568999999999888888762 3445555553 23556667788999999999999999998
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE-eeCCCeeEEEecC
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSP 242 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~ 242 (305)
++.||.|++||+++++.+..+. .|...+.++.|+|+++.+++++.||.|++||+++++.+..+ .+..++.+++|+|
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred EcCCCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 8889999999999888887776 67789999999999999999999999999999999998888 4778999999999
Q ss_pred CCCcEEEeeCCcE
Q 021925 243 LLDHVCIGEPQTI 255 (305)
Q Consensus 243 ~~~~l~~~~~~~~ 255 (305)
++.++++++.++.
T Consensus 230 ~~~~~~~~~~~~~ 242 (289)
T cd00200 230 DGYLLASGSEDGT 242 (289)
T ss_pred CCcEEEEEcCCCc
Confidence 9888888775666
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-34 Score=210.03 Aligned_cols=240 Identities=23% Similarity=0.369 Sum_probs=210.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~ 83 (305)
++++|++.|..+.|.+|++.|++++.|++|+.||.++|+....+++|.+-|+.+.-+.-| .++.+++.||++++||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 578999999999999999999999999999999999999999999999999999855444 4667889999999999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
.+.++++..+.++.++.|...+..+.++. +++.+++|++.+ ......+.+|.+.|+.+..+|+|.++.+
T Consensus 165 k~~~~t~~~kyqltAv~f~d~s~qv~sgg-----Idn~ikvWd~r~------~d~~~~lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 165 KEAIKTFENKYQLTAVGFKDTSDQVISGG-----IDNDIKVWDLRK------NDGLYTLSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred cchhhccccceeEEEEEecccccceeecc-----ccCceeeecccc------CcceEEeecccCceeeEEeccCCCcccc
Confidence 99999999999999999999888887764 477888998864 3678899999999999999999999999
Q ss_pred eeCCCcEEEEeCCCCc----EeeeeccccCC--ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925 164 AGEDAIVRIWDTETGK----LLKESDKETGH--KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~ 236 (305)
-+.|.++++||++... ++..++.. .| +.....++|+|++..+..|+.|..+++||......+..+. |...|+
T Consensus 234 nsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred ccccceEEEEEecccCCCCceEEEeecc-hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 9999999999998533 34444411 12 2345577899999999999999999999999888888888 888999
Q ss_pred EEEecCCCCcEEEeeCCcEE
Q 021925 237 AVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~ 256 (305)
+++|+|..+.|.+++.|...
T Consensus 313 ~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EeeecCCCcEEEEeccCcee
Confidence 99999999999999999874
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=231.03 Aligned_cols=255 Identities=16% Similarity=0.252 Sum_probs=231.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+..|...|.++.++|...+++++-.+|.|.||+.++...++.+.-...+|.+..|.+..+.+++|+.|..|+||+..++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 45679999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTII 162 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 162 (305)
+.+..+. |+..+++++.+|...+++++++ +..++.|+.... ..+.+.+++|...|.+++|+|.. +.++
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSD-----Dm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSD-----DMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCC-----ccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecCCCcccee
Confidence 9999998 9999999999999999999988 667778887643 36788999999999999999954 7999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC--CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 239 (305)
+++-|++|++|.+.+..+..+++ +|...|+++.+-+.| .+|++|+.|.+++|||..+..+++++. |...|+.+.
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred eeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE
Confidence 99999999999999999998888 899999999998844 689999999999999999999999999 888999999
Q ss_pred ecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccc
Q 021925 240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYC 277 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (305)
|+|.-+.+++|+.||. +++|....-.+...++.
T Consensus 235 fhp~lpiiisgsEDGT-----vriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGT-----VRIWNSKTYKLEKTLNY 267 (794)
T ss_pred ecCCCcEEEEecCCcc-----EEEecCcceehhhhhhc
Confidence 9999999999999998 77777655555444433
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=200.84 Aligned_cols=236 Identities=21% Similarity=0.350 Sum_probs=194.2
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
++-.+|+..|++++|+|.|++||+|+.|.++.||.-.. .+++.++++|...|.+++|+++|++||+++.|+.|-||.+
T Consensus 55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 34468999999999999999999999999999997554 3688899999999999999999999999999999999998
Q ss_pred CCCCe---eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 82 ETGAQ---LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 82 ~~~~~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
..+.. ...++ |...|..+.|+|...+++.++- ++.++++.-.. ...-...+.+.+|...|.+++|+|.
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY-----DnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY-----DNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEecc-----CCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCC
Confidence 86644 34444 7888999999999998888763 56666665542 3455788999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eEEEEE--
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------ELIKTY-- 229 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~-- 229 (305)
|..|++++.|++++||-..+. +. ..|..++..+.|. + ..|++++.|+.|+++.-... +.+...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~--~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS--GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc--hhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 999999999999999987632 11 1477889999998 3 47999999999999976542 122211
Q ss_pred eeCCCeeEEEecCC-CCcEEEeeCCcEE
Q 021925 230 VTERPVNAVTMSPL-LDHVCIGEPQTIK 256 (305)
Q Consensus 230 ~~~~~v~~~~~~~~-~~~l~~~~~~~~~ 256 (305)
.|+..|++++|+|. ...|++|++||..
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCceE
Confidence 27789999999995 6678888888873
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-34 Score=234.45 Aligned_cols=249 Identities=21% Similarity=0.311 Sum_probs=218.8
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
+.+|.++|+.++|+|++.++++|+.|..|++|+..+.+++.++.+|-+.|..+.|++.-..++|+|.|.+|+||+..+.+
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-----------------------CCceEEE
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-----------------------GGESVLI 141 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 141 (305)
++..+. |...|.|..|+|....++.++ ++..+++|++....... ..-..+.
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaS-----LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSAS-----LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEec-----ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 999998 888999999999998888876 47788888875322110 0112357
Q ss_pred EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
+++|+..|+-++|+|.-..+++|+.|..|++|.+...+ ........+|...|.++-|+|....+++.|+|++|++||+.
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 88999999999999999999999999999999987543 33344445899999999999999999999999999999999
Q ss_pred CceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 222 TLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 222 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
..+.+++++ ...+.+.++-+|..+++++|.+.|.+++..
T Consensus 281 kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 999999998 667899999999999999888777664443
No 37
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-34 Score=234.61 Aligned_cols=243 Identities=20% Similarity=0.326 Sum_probs=198.0
Q ss_pred ec-ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--------------------------------C----------
Q 021925 6 MK-GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------------------------------G---------- 42 (305)
Q Consensus 6 l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--------------------------------~---------- 42 (305)
++ +|.+.|.++.||+||+|||+||+|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 55 8999999999999999999999999999997654 0
Q ss_pred ------------------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEec-
Q 021925 43 ------------------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV- 103 (305)
Q Consensus 43 ------------------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~- 103 (305)
+++..+.+|.+.|.++.|+.++ +|++++.|++|++|++...+++..+.|+.-|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 1122356899999999999765 89999999999999999999999999999999999999
Q ss_pred CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeee
Q 021925 104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183 (305)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 183 (305)
|.++++.++ +++.+++|.+.. ..+.....-..-|+++++.|+|++.+.|+.+|.+++|+....+....
T Consensus 421 DDryFiSGS-----LD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 421 DDRYFISGS-----LDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred CCCcEeecc-----cccceEEeecCc-------CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 556666654 588888888854 33444455558899999999999999999999999999987776554
Q ss_pred ecccc-----CCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCCCCcEEEeeCCc
Q 021925 184 SDKET-----GHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 184 ~~~~~-----~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
..... .....|+.+.|.|.. ..+++.+.|..|+|+|.++.+++..++ ....-....|+.||++|++|+.|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 43211 112389999999844 357888889999999999888888777 223345678999999999999777
Q ss_pred EEEEEEeehhhh
Q 021925 255 IKFMLLVYLFVL 266 (305)
Q Consensus 255 ~~~~~~~~~~~~ 266 (305)
. +++|..
T Consensus 569 ~-----VYiW~~ 575 (712)
T KOG0283|consen 569 W-----VYIWKN 575 (712)
T ss_pred e-----EEEEeC
Confidence 6 677765
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-32 Score=215.53 Aligned_cols=237 Identities=29% Similarity=0.479 Sum_probs=208.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...+..+.|+|+++.+++++.||.|++|++.+++.+..+..|...+.++.|+|+++++++++.||.+.+||++++
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence 46789999999999999999999999999999999988888889999999999999999888888888999999999988
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+....+. +...+.++.++|++.+++++.. .+.+.++++. ..+....+..|...+.++.|+|+++.+++
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 194 (289)
T cd00200 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-----DGTIKLWDLR------TGKCVATLTGHTGEVNSVAFSPDGEKLLS 194 (289)
T ss_pred EEEEEeccCCCcEEEEEEcCcCCEEEEEcC-----CCcEEEEEcc------ccccceeEecCccccceEEECCCcCEEEE
Confidence 8887777 6778999999999888888762 3345555553 23456667788889999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 242 (305)
++.|+.|++||+++++.+..+. .|...+.++.|+|++.++++++.||.|++||+.+++....+. +...+.+++|+|
T Consensus 195 ~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (289)
T cd00200 195 SSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271 (289)
T ss_pred ecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC
Confidence 9999999999999988888775 577899999999998888888889999999999988888877 777899999999
Q ss_pred CCCcEEEeeCCcE
Q 021925 243 LLDHVCIGEPQTI 255 (305)
Q Consensus 243 ~~~~l~~~~~~~~ 255 (305)
+++.+++++.++.
T Consensus 272 ~~~~l~~~~~d~~ 284 (289)
T cd00200 272 DGKRLASGSADGT 284 (289)
T ss_pred CCCEEEEecCCCe
Confidence 9999999998886
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=223.81 Aligned_cols=238 Identities=20% Similarity=0.355 Sum_probs=209.0
Q ss_pred cccceEEEEEcCCCCEEEEeeCC-CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
-..+|..++|+..|.+||.|+.. |.+-||+.++...+...++|...+++++++|||+++++|+.||+|+|||..++-+.
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 34679999999999999998765 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCEEEEee
Q 021925 88 FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 88 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~ 165 (305)
.++. |.+.+..+.|+..++.+++++ +++.++.|++.+. ...+.+..+ .....+++..|.|..+.+|+
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssS-----LDGtVRAwDlkRY------rNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSS-----LDGTVRAWDLKRY------RNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEee-----cCCeEEeeeeccc------ceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 9998 899999999999999999875 4788888888654 333344333 34567899999999999999
Q ss_pred CCC-cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEeeCCCeeEEEecCC
Q 021925 166 EDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPL 243 (305)
Q Consensus 166 ~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~ 243 (305)
.|. .|.+|++++|+.+-.+. +|+++|.+++|+|++..|+++|.|.+|++||+-.. ..+.++.....+..++|+|+
T Consensus 455 ~d~F~IfvWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILS---GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred cceEEEEEEEeecCeeeehhc---CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence 875 79999999999998887 99999999999999999999999999999998644 56677788888999999999
Q ss_pred CCcEEEeeCCcEEEEEE
Q 021925 244 LDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 244 ~~~l~~~~~~~~~~~~~ 260 (305)
|+-|++++-+|.+-++.
T Consensus 532 G~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFD 548 (893)
T ss_pred CCeEEEEEecceEEEEE
Confidence 99999999998844333
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=226.81 Aligned_cols=248 Identities=25% Similarity=0.365 Sum_probs=213.4
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-----------------------------------
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY----------------------------------- 48 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~----------------------------------- 48 (305)
+.+.||+..|.++++|.+...+++|+ .+++++|+..+.++++++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 67889999999999999887777765 679999998877666553
Q ss_pred -----cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-----CC--e------eEEEeeCCCceEEEEecCCceEEE
Q 021925 49 -----RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA--Q------LFTFNFDSPARSVDFAVGDKLAVI 110 (305)
Q Consensus 49 -----~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-----~~--~------~~~~~~~~~v~~~~~~~~~~~~~~ 110 (305)
++|.+.|++++.+||++.+++||.|.+|++||..- +. . ..++..+..+.|+.++|+++++++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 47999999999999999999999999999999641 11 1 134457889999999999999999
Q ss_pred eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC
Q 021925 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH 190 (305)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 190 (305)
+- ++..+.++-+. ..+....+.||.-+|.|+..+||++.++||+.|..|++|-+.-|.+-+.+. +|
T Consensus 526 sL-----LdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AH 591 (888)
T KOG0306|consen 526 SL-----LDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AH 591 (888)
T ss_pred Ee-----ccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cc
Confidence 84 45566665553 335677789999999999999999999999999999999999999999988 89
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 191 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
...|.++.|.|....+.+++.|+.|+-||-...+.+..+. |...|+|++.+|+|.++++++.|.. +++|...-+
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s-----IRlwE~tde 666 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS-----IRLWERTDE 666 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce-----eEeeeccCc
Confidence 9999999999999999999999999999999999999998 8899999999999999999998876 677765444
Q ss_pred hh
Q 021925 270 IL 271 (305)
Q Consensus 270 ~~ 271 (305)
..
T Consensus 667 ~~ 668 (888)
T KOG0306|consen 667 IL 668 (888)
T ss_pred ce
Confidence 33
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=215.11 Aligned_cols=252 Identities=20% Similarity=0.292 Sum_probs=199.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
+++.|+++|.-+.||++|++||+++.|.+..||++... +..+++.+|..+|..+.|+||.++|++|+.|..+.+||+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 57899999999999999999999999999999987543 457888999999999999999999999999999999999
Q ss_pred CCCCeeEEEeeC--CCceEEEEecCCceEEEeCCcceeee-----------eeE---EEEEeecccCCCCCceEEE----
Q 021925 82 ETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELN-----------SAI---HVKRIARDPADQGGESVLI---- 141 (305)
Q Consensus 82 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~---- 141 (305)
.+|.....+... ..+.+++|.||+..+++++.+..... ... +++++.... .++.+..
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~---Dgk~vl~v~~d 375 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY---DGKYVLLVTVD 375 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC---CCcEEEEEecc
Confidence 999999888854 88999999999999888876321110 001 122222111 1111111
Q ss_pred ---------------EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccc--eEEEEEcC-CC
Q 021925 142 ---------------LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAA-DG 203 (305)
Q Consensus 142 ---------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~-~~ 203 (305)
+.....+|++++.|.+++++++.-.+..+++||++..+.++.+. +|... +..-+|-. +.
T Consensus 376 ~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~---Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF---GHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh---cccccceEEEeccCCCCc
Confidence 22235679999999999999999999999999999888888887 56543 33334443 55
Q ss_pred CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhh
Q 021925 204 SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 204 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 267 (305)
.++++||+|+.|+||+..+++++..+. |...|++++|+|..+. +|+|++|+. +++|...
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-----IRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-----IRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe-----EEEecCC
Confidence 799999999999999999999999998 8889999999998765 666777776 7777653
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.3e-32 Score=239.47 Aligned_cols=234 Identities=15% Similarity=0.232 Sum_probs=198.1
Q ss_pred cccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCe
Q 021925 9 HERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 9 h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
+...|.+++|+| ++.+|++++.||+|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|++||+++++.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 456799999987 578999999999999999999999999999999999999997 788999999999999999999999
Q ss_pred eEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 87 LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 87 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
+..+.....+.++.|.+ ++..+++++. ++.+.+|++... ......+.+|...|.++.|. ++.+|++++
T Consensus 611 ~~~~~~~~~v~~v~~~~~~g~~latgs~-----dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s 679 (793)
T PLN00181 611 IGTIKTKANICCVQFPSESGRSLAFGSA-----DHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVSSS 679 (793)
T ss_pred EEEEecCCCeEEEEEeCCCCCEEEEEeC-----CCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEEEE
Confidence 88888778899999964 6778877765 567777777532 12455677899999999997 678999999
Q ss_pred CCCcEEEEeCCCC------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---------
Q 021925 166 EDAIVRIWDTETG------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------- 230 (305)
Q Consensus 166 ~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------- 230 (305)
.|+.|++||++.+ +++..+. +|...+..++|+|++.+|++|+.|+.|++|+.....++..+.
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~ 756 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG 756 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc
Confidence 9999999999753 4555555 788999999999999999999999999999987665443322
Q ss_pred -----eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 231 -----TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 231 -----~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+...|.+++|+|++..|++|+.++.+
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 23458999999999999999999873
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-34 Score=213.48 Aligned_cols=242 Identities=21% Similarity=0.318 Sum_probs=207.5
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--------CCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------GHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw 79 (305)
|.+..+.|..|+|||++|++|+.||-|.+|+..+|+..+.++ -+.++|.|+.|+.|...|++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 556778899999999999999999999999999987655432 477899999999999999999999999999
Q ss_pred ecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 80 NVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 80 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
.+++|+++..+. +...|+++.|+.++..++.++. +..+++..+ ..++....+++|.+.|+...|.++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-----D~tvRiHGl------KSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-----DQTVRIHGL------KSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-----cceEEEecc------ccchhHHHhcCccccccceEEcCC
Confidence 999999999987 8889999999999998887764 344444443 456788889999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccc--------------------------------------------cCCccc
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKE--------------------------------------------TGHKKT 193 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------------------------------~~~~~~ 193 (305)
|.++++++.||+|++|+.++.+++.++... ....+.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD 439 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence 999999999999999999987766554321 012234
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 194 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
..+.+.+|.|.++.+.++|+.++.+...+|+...++. |+..+-.++-+|..+.+++-+.|+. +++|.
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl-----lKLWk 507 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL-----LKLWK 507 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch-----hhhcC
Confidence 5567789999999999999999999999999999888 8888999999999999999998887 66663
No 44
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.3e-31 Score=219.32 Aligned_cols=228 Identities=18% Similarity=0.303 Sum_probs=185.1
Q ss_pred eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCC-cEEEEEeCCC
Q 021925 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQ 74 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg 74 (305)
..+.||.+.|++++|+| ++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567889999999999999975 6899999999
Q ss_pred cEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-eeEE
Q 021925 75 TAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-INRA 152 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~ 152 (305)
+|+|||+++++.+..+. +...+.+++|+|++..+++++. ++.+.+|++.. ++.+..+.+|.+. ...+
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-----Dg~IrIwD~rs------g~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-----DKKLNIIDPRD------GTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC-----CCEEEEEECCC------CcEEEEEecCCCCcceEE
Confidence 99999999998887776 7788999999999999988875 56777887743 3566777888765 4567
Q ss_pred EEcCCCCEEEEee----CCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEE
Q 021925 153 VWGPLNRTIISAG----EDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELI 226 (305)
Q Consensus 153 ~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 226 (305)
.|.+++..+++++ .|+.|++||+++.. +...... .....+....|++++++|++++ .|+.|++||+.+++++
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 8999888877654 47899999998754 3332221 2334566678999999998887 5999999999999887
Q ss_pred EEEe--eCCCeeEEEecCCC
Q 021925 227 KTYV--TERPVNAVTMSPLL 244 (305)
Q Consensus 227 ~~~~--~~~~v~~~~~~~~~ 244 (305)
.... ...++..++|.|..
T Consensus 296 ~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 296 FCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEeeccCCCCCcceEecccc
Confidence 7654 45677888888854
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-32 Score=218.82 Aligned_cols=237 Identities=20% Similarity=0.294 Sum_probs=210.2
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-C
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-A 85 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~ 85 (305)
+-..-||++..|-+..+++++|+.|..|+||+..+++.++.+++|.+.|.+++.+|...+++|+|.|-+|++||.+.+ .
T Consensus 52 eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa 131 (794)
T KOG0276|consen 52 EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA 131 (794)
T ss_pred eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence 344667888889888899999999999999999999999999999999999999999999999999999999999866 4
Q ss_pred eeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC--CEE
Q 021925 86 QLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTI 161 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l 161 (305)
+.+++. |...|.+++|.|.+. .++.+ .++..+++|.+. ...+...+++|...|+++.+-+.| .+|
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~-----sLDrTVKVWslg------s~~~nfTl~gHekGVN~Vdyy~~gdkpyl 200 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASA-----SLDRTVKVWSLG------SPHPNFTLEGHEKGVNCVDYYTGGDKPYL 200 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeee-----eccccEEEEEcC------CCCCceeeeccccCcceEEeccCCCcceE
Confidence 555565 888899999999654 44444 357888888884 446778899999999999998865 699
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 240 (305)
++|+.|..|+|||.++..+++++. +|...|..+.|+|.=..+++|++||+++||+..+.++..++. ...+++|++-
T Consensus 201 IsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred EecCCCceEEEeecchHHHHHHhh---cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEee
Confidence 999999999999999999999998 999999999999999999999999999999999999998888 6778999999
Q ss_pred cCCCCcEEEeeCCcEEE
Q 021925 241 SPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~~~ 257 (305)
.+.++.+++|.+++...
T Consensus 278 ~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVT 294 (794)
T ss_pred cCCCCeEEEeccCCcEE
Confidence 99999999998877643
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-30 Score=192.63 Aligned_cols=245 Identities=16% Similarity=0.261 Sum_probs=195.7
Q ss_pred CCce-EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee----------------------------------
Q 021925 1 MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL---------------------------------- 45 (305)
Q Consensus 1 ~~~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~---------------------------------- 45 (305)
|||- .++.-.+.|+++.|+++|.++++++.|.+++|||..+++.+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3443 35566789999999999999999999999999998765443
Q ss_pred ----------EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcc
Q 021925 46 ----------GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115 (305)
Q Consensus 46 ----------~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 115 (305)
+.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.... -..++|.|.|.+++++.+.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~- 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGS- 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCC-
Confidence 3356999999999999988999999999999999999888776665333 3467899999999998763
Q ss_pred eeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE
Q 021925 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195 (305)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 195 (305)
..+.+++++..... +........+.....+.+.|||+|++|+.++..+.+++.|.-+|.....+........---
T Consensus 162 ----~~IkLyD~Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 162 ----ELIKLYDLRSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CeEEEEEecccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 35666666543221 1111112225567889999999999999999999999999999998888875433333336
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeC
Q 021925 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
..+|.||++++++|+.||+|.+|++++++.+..+. +..++.++.|+|....+++++.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 77899999999999999999999999999999988 4788999999999877777654
No 47
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-31 Score=195.95 Aligned_cols=260 Identities=17% Similarity=0.262 Sum_probs=200.9
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------------------------------------eeEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------------------------------------RLGTY 48 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------------------------------------~~~~~ 48 (305)
.|+||.+.|++++|+.||++|||++.|++|++|++++.. .+..+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 488999999999999999999999999999999876311 01000
Q ss_pred -----------------------cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecC
Q 021925 49 -----------------------RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG 104 (305)
Q Consensus 49 -----------------------~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~ 104 (305)
+.|.-.+..+-...++++|++++.|..|.+|+++ |+.+..+. ....-...+.+|+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 1245566677777788999999999999999998 88888887 4556677889999
Q ss_pred CceEEEeCCcceeeeeeEEEEEeeccc--CCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC----C
Q 021925 105 DKLAVITTDPFMELNSAIHVKRIARDP--ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET----G 178 (305)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~ 178 (305)
|+++++++ +...+.+|.+.... .-++...+..+++|+..|..++|+|+.+.+++.+.||++++||..- +
T Consensus 240 GRFia~~g-----FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 240 GRFIAVSG-----FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred CcEEEEec-----CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 99999875 35567777765432 2234456778899999999999999999999999999999999863 1
Q ss_pred c---Eeeeec-cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeC
Q 021925 179 K---LLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 179 ~---~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+ .++... ......+....++.+|+|+.||.+. ...++++..++++....++ |+..|.+++|+++|++++++++
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 1 122221 1112223344899999999887665 5579999999998888777 8999999999999999999998
Q ss_pred CcEEEEEEeehhhhhhhhh
Q 021925 253 QTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ 271 (305)
.-.+++-+..-|......+
T Consensus 394 r~vrv~~ntpg~~~~V~~~ 412 (420)
T KOG2096|consen 394 RYVRVIRNTPGWHSRVVKL 412 (420)
T ss_pred eeeeeecCCCchhhHHHHh
Confidence 8877666666665544433
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.5e-30 Score=231.15 Aligned_cols=236 Identities=15% Similarity=0.242 Sum_probs=192.2
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----e----eeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E----RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTA 76 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~----~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v 76 (305)
+.+|.+.|.+++|+|+|+++|+|+.|+.|+||+..+. . +...+. +...+.+++|+| ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3458999999999999999999999999999997532 1 222333 356799999987 57899999999999
Q ss_pred EEEecCCCCeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 77 KLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
++||+.+++.+..+. +...|.+++|+| ++.++++++. ++.+.+|++.. ...+..+..+ ..+.++.|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~~------~~~~~~~~~~-~~v~~v~~ 625 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSINQ------GVSIGTIKTK-ANICCVQF 625 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECCC------CcEEEEEecC-CCeEEEEE
Confidence 999999998888776 788999999997 6778887765 56677887743 2344455543 67899999
Q ss_pred c-CCCCEEEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eEE
Q 021925 155 G-PLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------ELI 226 (305)
Q Consensus 155 ~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~ 226 (305)
+ +++.+|++|+.||.|++||+++.+ .+..+. +|...|.++.|. ++..|++++.|++|++||++.+ +++
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 5 568999999999999999998765 344554 799999999997 6789999999999999999743 566
Q ss_pred EEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925 227 KTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFM 258 (305)
Q Consensus 227 ~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 258 (305)
..+. |...+.+++|+|++++|++|+.++...+
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i 734 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV 734 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence 6776 7788999999999999999999987433
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.5e-33 Score=198.43 Aligned_cols=251 Identities=26% Similarity=0.459 Sum_probs=214.1
Q ss_pred ceEecccccceEEEEEcC---CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925 3 PILMKGHERPLTYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw 79 (305)
|++-.||+.+|-.++||| +|-+|++++.||.-.+-+-++|..+.++.+|++.|++.....+...-++++.|=+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 677889999999999986 88899999999999999999999999999999999999999888888999999999999
Q ss_pred ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
|.-+|..+.++.+..-|..++|+.+.+.+++++...+ +++.++. ....+...+.+|.+.|..+.|....+
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekl-----lrvfdln-----~p~App~E~~ghtg~Ir~v~wc~eD~ 156 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKL-----LRVFDLN-----RPKAPPKEISGHTGGIRTVLWCHEDK 156 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHH-----hhhhhcc-----CCCCCchhhcCCCCcceeEEEeccCc
Confidence 9999999999999999999999999999999876332 2333332 22345566789999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeecccc------------------------------------CCccceEEEEEcCCC
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKET------------------------------------GHKKTITSLAKAADG 203 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------~~~~~v~~~~~~~~~ 203 (305)
.|++++.|++||+||.++++.+++++... .-...|.+...+|+.
T Consensus 157 ~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK 236 (334)
T ss_pred eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence 99999999999999999999888765310 112346677777888
Q ss_pred CEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 204 SHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 204 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
..+++|+.|..++.||..+++.+..+. |.++|.|+.|+|+|..-++|+.||. +++|....
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-----irlWQt~~ 298 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-----IRLWQTTP 298 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-----EEEEEecC
Confidence 888889999999999999999888863 8899999999999999999999998 56665443
No 50
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=7.9e-32 Score=198.31 Aligned_cols=218 Identities=20% Similarity=0.335 Sum_probs=178.8
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------------C------eeeEEecCCCcceEEEEEcCCCc
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------G------ERLGTYRGHNGAVWCCDVSRDSM 65 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------------~------~~~~~~~~~~~~v~~i~~~~~~~ 65 (305)
..+..|++++++-+|+|||.++|+|+.|.+|+|.|++. + -.++++-.|.++|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 46889999999999999999999999999999999871 1 24567778999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCe---eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 66 TLITGSADQTAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 66 ~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
.|++++.|++|+++|+..... .+.+....+++++.|+|.|.+++++++- ...+++++....-- -....-
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH-----p~~rlYdv~T~Qcf---vsanPd 257 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH-----PTLRLYDVNTYQCF---VSANPD 257 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC-----CceeEEeccceeEe---eecCcc
Confidence 999999999999999875533 3344577889999999999999999873 33344443321100 011123
Q ss_pred eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
..|.+.|+++.+++.+++.++++.||.|++||--+++++.++.... ....|.+..|..+|+++++.+.|..+++|.+.+
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 5789999999999999999999999999999999999999887432 245799999999999999999999999999998
Q ss_pred ceEEEEEe
Q 021925 223 LELIKTYV 230 (305)
Q Consensus 223 ~~~~~~~~ 230 (305)
++++..+.
T Consensus 337 ~R~l~~Yt 344 (430)
T KOG0640|consen 337 GRMLKEYT 344 (430)
T ss_pred CceEEEEe
Confidence 87766654
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-31 Score=213.01 Aligned_cols=263 Identities=18% Similarity=0.238 Sum_probs=217.2
Q ss_pred ecccccceEEEEE-cCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 6 MKGHERPLTYLKY-NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 6 l~~h~~~v~~~~~-~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+-|-.+.|.+|+| .|+.++||.++..+.+|+++..+..+. .+.+|++.|.+++...+|-+|+||+.|+++++|.++++
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 4467788999988 567789999999999999998876664 88999999999996667789999999999999988544
Q ss_pred Cee----EEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEE----EEeccCCCeeEEEE
Q 021925 85 AQL----FTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQGRINRAVW 154 (305)
Q Consensus 85 ~~~----~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~ 154 (305)
... .... |...+.+++++..+. +++.++. +..+++|.+........ .... ....|...|++++.
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~-----D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ-----DCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecC-----CceEEEecCCCcccccc-cceehhhHHHHhhcccccceEe
Confidence 322 2222 788999999977654 4455444 67888888877322221 2222 44679999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCC
Q 021925 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER 233 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 233 (305)
+|+.+.++||++|.+.+||++........+. +|...|.++.|+|..+.++|+|.|++|+||.+.++.+++++. |..
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLs---GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLS---GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEee---CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 9999999999999999999999888888888 999999999999999999999999999999999999999999 999
Q ss_pred CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccccccc
Q 021925 234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKY 283 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (305)
.|..+.|-.+|+.|++|+.+|. +++|+.....-...+..+.++-.
T Consensus 549 aVlra~F~~~~~qliS~~adGl-----iKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGL-----IKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCc-----EEEEeccchhhhhhhhhccceeE
Confidence 9999999999999999999998 77887766665555555544433
No 52
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=6e-30 Score=212.95 Aligned_cols=229 Identities=17% Similarity=0.273 Sum_probs=179.7
Q ss_pred EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe--------eeEEecCCCcceEEEEEcCCCcE-EEEEeCCC
Q 021925 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCDVSRDSMT-LITGSADQ 74 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg 74 (305)
.+.+|.++|.+++|+|+ +++||+|+.||+|+|||+.++. ++..+.+|...|.+++|+|++.. |++++.|+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 47899999999999996 7899999999999999997642 34567889999999999998865 57899999
Q ss_pred cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE--
Q 021925 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA-- 152 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-- 152 (305)
+|++||+++++.+..+.+...+.+++|+|++.++++++. +..+.+|++.. ++.+..+.+|.+.+...
T Consensus 149 tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~-----D~~IrIwD~Rs------g~~i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 149 FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCV-----GKHMHIIDPRK------QEIASSFHIHDGGKNTKNI 217 (568)
T ss_pred eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEec-----CCEEEEEECCC------CcEEEEEecccCCceeEEE
Confidence 999999999998888877888999999999999987764 45677777643 45667788898765433
Q ss_pred ---EEcCCCCEEEEeeCCC----cEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 153 ---VWGPLNRTIISAGEDA----IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 153 ---~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
.|++++++|++++.|+ .|+|||+++ ++++.... ...+.+.+......+++.++++|+.|+.|++|++..+.
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 3458889999988764 799999995 55555543 11233444444445568899999999999999998764
Q ss_pred E--EEEEeeCCCeeEEEecCCCC
Q 021925 225 L--IKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 225 ~--~~~~~~~~~v~~~~~~~~~~ 245 (305)
. +..+.+..+..+++|.|...
T Consensus 297 ~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 297 IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEeecccccCCCccceEEccccc
Confidence 2 33344677889999999753
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-30 Score=201.03 Aligned_cols=244 Identities=20% Similarity=0.270 Sum_probs=194.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeC--CCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~v~vwd 80 (305)
.+.+|..+++-..|+|.|.++|+|...|.|||||....+ ...+++...++|.+|+|++|+++|+..++ ++..+++-
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 467899999999999999999999999999999976533 33466778899999999999999988765 33333444
Q ss_pred cCCCCeeEEEe-eCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 81 VETGAQLFTFN-FDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 81 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.++|..+-.+. +...+.++.|-|...+-+ +++++ +.+..++- .+.+....+..|..-|.++.|+|||
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD-----n~v~ffeG------PPFKFk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDD-----NTVAFFEG------PPFKFKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCC-----CeEEEeeC------CCeeeeecccccccceeeEEECCCC
Confidence 44676666666 777888999988665443 33332 22222111 2334556677899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE---------
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--------- 229 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------- 229 (305)
.++++++.||++.+||-.+++.+..+....+|.+.|.+++|+||+..+++++.|.+++|||+.+.++++++
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq 282 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ 282 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence 99999999999999999999999999877799999999999999999999999999999998875443332
Q ss_pred ----------------------------------e-eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 230 ----------------------------------V-TERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 230 ----------------------------------~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
. |...|++++.+|++++|++|+.||.+..|
T Consensus 283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 2 44568999999999999999999984433
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=8.3e-33 Score=206.44 Aligned_cols=232 Identities=23% Similarity=0.416 Sum_probs=196.7
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
..+.|.|+.+. ...+++|..|.+|+|||..+.+++..+.+|++.|.|+.|. .+.|++|+.|.+|++||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45678999885 4579999999999999999999999999999999999995 5599999999999999999999988
Q ss_pred EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
++- +-..|..+.|+. .++++++. +..+.+|++.... .....+.+.+|...|+.+.|+ .+++++++.|
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSk-----DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD 339 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSK-----DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD--DKYIVSASGD 339 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecC-----CceeEEEeccCch---HHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence 776 667788887764 35555544 5667778776433 234456778999999999997 5699999999
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCc
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH 246 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 246 (305)
.+|++|++.+++.++.+. +|...|.|+.+ .++++++|++|.+|++||+..|.+++.++ |+.-|.++.|.. +.
T Consensus 340 RTikvW~~st~efvRtl~---gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--kr 412 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KR 412 (499)
T ss_pred ceEEEEeccceeeehhhh---cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ce
Confidence 999999999999999998 89999988877 58899999999999999999999999998 888899999965 56
Q ss_pred EEEeeCCcEEEEEEeehhhhhh
Q 021925 247 VCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+++|+.||. +++|++..
T Consensus 413 IVSGaYDGk-----ikvWdl~a 429 (499)
T KOG0281|consen 413 IVSGAYDGK-----IKVWDLQA 429 (499)
T ss_pred eeeccccce-----EEEEeccc
Confidence 999999998 66666543
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5e-31 Score=218.21 Aligned_cols=251 Identities=18% Similarity=0.281 Sum_probs=217.0
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
++.-+..|..++|+|...+++++--.|.|++||.+-+..+..+..|.++|..++|+|++.+++||+.|-.|+||+.++.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
++.++. |-..|+.+.|++.-.+++.+++ +..+.+|++. ..+++..+.+|...|.|..|+|....++++
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASD-----DQTIrIWNwq------sr~~iavltGHnHYVMcAqFhptEDlIVSa 153 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASD-----DQTIRIWNWQ------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSA 153 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccC-----CCeEEEEecc------CCceEEEEecCceEEEeeccCCccceEEEe
Confidence 988877 8899999999999999999998 7788888884 458899999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCcEeee-----------------e---------ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925 165 GEDAIVRIWDTETGKLLKE-----------------S---------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~-----------------~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 218 (305)
|-|-+|++||+..-+.... + ....+|...|+-++|+|.-..+++|+.|..|++|
T Consensus 154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence 9999999999863110000 0 0134899999999999999999999999999999
Q ss_pred EcCCceE--EEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 219 DARTLEL--IKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 219 d~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
.+...+. +.+.+ |...|.++-|+|..+++++.+.|+. +.+|+..-....
T Consensus 234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-----irVwDm~kRt~v 285 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-----IRVWDMTKRTSV 285 (1202)
T ss_pred EeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-----EEEEecccccce
Confidence 9875432 22333 8889999999999999999999987 666766544443
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=4.5e-32 Score=202.54 Aligned_cols=232 Identities=22% Similarity=0.369 Sum_probs=191.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.|.||++.|.|+.|. .+.+++|+.|.+|++||.++++++.++-.|.+.|..+.|+. .++++++.|.++.+||+.+.
T Consensus 232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCc
Confidence 578999999999986 55999999999999999999999999999999999999984 38999999999999999876
Q ss_pred CeeEEE----eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 85 AQLFTF----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 85 ~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
..+... .+...|..+.|+.. +++.+++ +..+++|++. ..+.++.+.+|+..|.|+.+. +++
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd~k--yIVsASg-----DRTikvW~~s------t~efvRtl~gHkRGIAClQYr--~rl 372 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFDDK--YIVSASG-----DRTIKVWSTS------TCEFVRTLNGHKRGIACLQYR--DRL 372 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccccc--eEEEecC-----CceEEEEecc------ceeeehhhhcccccceehhcc--CeE
Confidence 533221 16677777777654 7777765 6677778774 457889999999999998875 889
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE---------EEE-e
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---------KTY-V 230 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~-~ 230 (305)
+++|+.|.+|++||+..|.+++.++ +|+.-|.++.|. .+.+++|+.||+|++||+..+... .+. +
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHh---chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence 9999999999999999999999998 999999999995 568999999999999999876432 222 2
Q ss_pred eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 231 TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 231 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
|.+.|..+.|.. ..+++++.++. +.+|+..
T Consensus 448 hsgRVFrLQFD~--fqIvsssHddt-----ILiWdFl 477 (499)
T KOG0281|consen 448 HSGRVFRLQFDE--FQIISSSHDDT-----ILIWDFL 477 (499)
T ss_pred ccceeEEEeecc--eEEEeccCCCe-----EEEEEcC
Confidence 677888888864 45777777766 5555543
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.9e-31 Score=199.88 Aligned_cols=244 Identities=19% Similarity=0.277 Sum_probs=200.2
Q ss_pred CceE--ecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 2 RPIL--MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 2 ~~~~--l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
+|.+ |.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.++..++.+|.+.|.+|++.. ..+++++.|.+|+.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 3543 78999999999999977 7899999999999999999999999999999999999986 57899999999999
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
|.++. ....++.....+..+.-+..+..+++++. .+.+|+..+ ..++..+.-....|.++.|+|..
T Consensus 134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe-------~i~IWD~~R------~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE-------QIDIWDEQR------DNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred eeccC-CcceeeeccccccccccccccccccccCc-------eeeeccccc------CCccceeecCCCceeEEecCCCc
Confidence 99875 57778888888888887777777777654 455566543 35666677777888899999876
Q ss_pred C-EEEEeeCCCcEEEEeCCCCcEeeeecc---------------------------------------ccCCccceEEEE
Q 021925 159 R-TIISAGEDAIVRIWDTETGKLLKESDK---------------------------------------ETGHKKTITSLA 198 (305)
Q Consensus 159 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------------------------~~~~~~~v~~~~ 198 (305)
. .|+++..|+.|.+||++++++++.+.. ..+|.+.|.++.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 4 566667899999999988777654321 236788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
|+|.|+-+++||.|.+|+||..+.+.....+. --..|.|+.||.|.+++++|++++. +.+|..
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n-----vRlWka 344 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN-----VRLWKA 344 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc-----eeeeec
Confidence 99999999999999999999999887655544 3346899999999999999999998 555543
No 58
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=3.1e-30 Score=201.72 Aligned_cols=247 Identities=18% Similarity=0.207 Sum_probs=195.0
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---------------------------eeeE---------
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---------------------------ERLG--------- 46 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---------------------------~~~~--------- 46 (305)
.+.|++|+..|.++++.|.|..+++|+.|..|++||+... ..+.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 3578999999999999999999999999999999997621 1000
Q ss_pred -----------------------EecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCe-eEEEe------eCCC
Q 021925 47 -----------------------TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ-LFTFN------FDSP 95 (305)
Q Consensus 47 -----------------------~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~-~~~~~------~~~~ 95 (305)
..++|...++|.+|+|+ ...+++++.||++++||+...+. ...+. ..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 01478899999999995 46889999999999999876542 33333 2346
Q ss_pred ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC--CeeEEEEcCCCCEEEEeeCCCcEEEE
Q 021925 96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIW 173 (305)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iw 173 (305)
+..++|++++..++++.. ++.+.+|+..... .......-+.|.. .|+++.||++|++|++-+.|+++++|
T Consensus 320 ~tsC~~nrdg~~iAagc~-----DGSIQ~W~~~~~~---v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCL-----DGSIQIWDKGSRT---VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred ceeeecCCCcchhhhccc-----CCceeeeecCCcc---cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 889999999999888764 7788888863321 1223444567776 89999999999999999999999999
Q ss_pred eCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCC
Q 021925 174 DTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLD 245 (305)
Q Consensus 174 d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 245 (305)
|++..+ ++...... ....+-+.++|||+.++|++|+. .|.+.+||..+.+.+..+. ....|..+.|+|.-+
T Consensus 392 DLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 999754 44333321 23456678999999999999875 5789999999999999887 667799999999999
Q ss_pred cEEEeeCCcEEEE
Q 021925 246 HVCIGEPQTIKFM 258 (305)
Q Consensus 246 ~l~~~~~~~~~~~ 258 (305)
.|.+|+++|...+
T Consensus 471 Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 471 QIFAGSGDGTAHV 483 (641)
T ss_pred heeeecCCCceEE
Confidence 9999999987543
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.4e-30 Score=205.44 Aligned_cols=238 Identities=18% Similarity=0.313 Sum_probs=207.9
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
+++.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.|+.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378999999999999999999999999999999999999998 99999999998 568999999999999999988765
Q ss_pred EE-Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEe
Q 021925 88 FT-FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISA 164 (305)
Q Consensus 88 ~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 164 (305)
.. +. |...|..++|++++..++.++. ++.+.+|+. ...++...+..|...|..++|+|-. ..||+|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgn-----DN~~~Iwd~------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGN-----DNVVFIWDG------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCC-----ccceEeccC------CCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence 55 44 8899999999999999999987 556666666 3446788899999999999999965 677876
Q ss_pred e--CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE--EeCCCeEEEEEcCCceEEEEEe-eCCCeeEEE
Q 021925 165 G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (305)
Q Consensus 165 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 239 (305)
+ .|+.|++||..+++.+..+. ....|.++.|++..+.|++ |..++.|.||+..+.+.+..+. |..+|..++
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA 438 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence 5 59999999999999998885 6789999999998877665 3457889999999999988887 999999999
Q ss_pred ecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
++|||..+++|+.|.. ++.|.+..
T Consensus 439 ~SPdg~~i~t~a~DET-----lrfw~~f~ 462 (484)
T KOG0305|consen 439 LSPDGETIVTGAADET-----LRFWNLFD 462 (484)
T ss_pred ECCCCCEEEEecccCc-----EEeccccC
Confidence 9999999999999998 66665543
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.8e-30 Score=198.67 Aligned_cols=239 Identities=23% Similarity=0.332 Sum_probs=202.9
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+...++.|.++.|..||+++|+|...|.|+|+|..+...+..+.+|+.+|..+.|+| ++..+++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 344567899999999999999999999999999777668889999999999999999 5567888999999999999988
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
.....+. +...|++.+++|....++..+ .+++.++.|++.... ....--.|..+|..+.+-|.|..+++
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtG----sYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~ias 213 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTG----SYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIAS 213 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEec----CCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEE
Confidence 8644554 889999999999877555443 357888899886431 23334468889999999999999998
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCC
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 243 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 243 (305)
++. ..|++||+.+|...-... ..|...|+|+.+..++..|++|+.|+.|++||+.+.+.+..+...++|.+++.+|+
T Consensus 214 AgG-n~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 214 AGG-NSVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD 290 (487)
T ss_pred cCC-CeEEEEEecCCceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence 874 679999999665443333 15999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCcEEE
Q 021925 244 LDHVCIGEPQTIKF 257 (305)
Q Consensus 244 ~~~l~~~~~~~~~~ 257 (305)
++.+++|.++|...
T Consensus 291 d~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVS 304 (487)
T ss_pred CceEEEecccceee
Confidence 99999999998753
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.5e-30 Score=216.27 Aligned_cols=243 Identities=19% Similarity=0.245 Sum_probs=202.9
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------------------CeeeEEecCCCcceEEEEEcCCCcEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------------GERLGTYRGHNGAVWCCDVSRDSMTL 67 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~l 67 (305)
+..|.+.|+|+.|+|||++||+|+.|+.|.||+... -+.+..+.+|...|..++|+|++.+|
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 568999999999999999999999999999998762 13567788999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-
Q 021925 68 ITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP- 145 (305)
Q Consensus 68 ~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (305)
++++.|++|.+||.++.+.+..+. |.+.|..+.|.|-|+++++-++ +..+.+|++... ...+.+.++
T Consensus 145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd-----Drtikvwrt~dw------~i~k~It~pf 213 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD-----DRTLKVWRTSDW------GIEKSITKPF 213 (942)
T ss_pred EEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC-----CceEEEEEcccc------eeeEeeccch
Confidence 999999999999999998888888 8999999999999999999887 556666664321 122222222
Q ss_pred -----CCCeeEEEEcCCCCEEEEeeC----CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-----CC-------
Q 021925 146 -----QGRINRAVWGPLNRTIISAGE----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-----GS------- 204 (305)
Q Consensus 146 -----~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------- 204 (305)
...+..+.|||||.+|++... -..+.|.+..+.+.-..+- +|.+++.++.|+|. .+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCC
Confidence 335678999999999998753 3478899988887777776 89999999999981 11
Q ss_pred -----EEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 205 -----HFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 205 -----~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
.+|+|+.|++|.||.....+++.... ....|.+++|+|||..|++++-||........
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 57899999999999998888887776 67889999999999999999999986655444
No 62
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=191.60 Aligned_cols=242 Identities=21% Similarity=0.393 Sum_probs=215.1
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.++.||...|..+++|+--.|+++++.|+.|+.||++.++.++.+.+|-+.|.|++.+|.-..|++|+.|.+++|||+++
T Consensus 187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 35789999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
...+..+. +..+|.++.+.|-+..+++++. +..+++|++.. ++....+..|+..+.+++.+|....+|
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-----D~tvrlWDl~a------gkt~~tlt~hkksvral~lhP~e~~fA 335 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQPTDPQVITGSH-----DSTVRLWDLRA------GKTMITLTHHKKSVRALCLHPKENLFA 335 (460)
T ss_pred cceEEEecCCCCcceeEEeecCCCceEEecC-----CceEEEeeecc------CceeEeeecccceeeEEecCCchhhhh
Confidence 99999998 9999999999997777777764 67888888853 577788899999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE---------eeCC
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY---------VTER 233 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~ 233 (305)
+++.|. |+-|++..+..+..+. +|...+++++...|+ ++++|+.+|.+.+||.+++...+.. ..+.
T Consensus 336 Sas~dn-ik~w~~p~g~f~~nls---gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEa 410 (460)
T KOG0285|consen 336 SASPDN-IKQWKLPEGEFLQNLS---GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEA 410 (460)
T ss_pred ccCCcc-ceeccCCccchhhccc---cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccccc
Confidence 998864 8999999999888876 899999999998876 7899999999999999988655443 2456
Q ss_pred CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
.|.+.+|...|..|++|..|.. ++.|..
T Consensus 411 gI~as~fDktg~rlit~eadKt-----Ik~~ke 438 (460)
T KOG0285|consen 411 GIFASCFDKTGSRLITGEADKT-----IKMYKE 438 (460)
T ss_pred ceeEEeecccCceEEeccCCcc-----eEEEec
Confidence 7899999999999999988887 555543
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=186.89 Aligned_cols=204 Identities=18% Similarity=0.346 Sum_probs=176.9
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
.|+.-|.+++|+.|.++|++|+.++.++|+|++..+ +...+.+|.+.|..+.|....+.+++++.|++|++||.+++..
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 588899999999999999999999999999998754 5678899999999999999888999999999999999999999
Q ss_pred eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
++++..+.+|.++.++++|.++.++....+.++..... ..+..+ .-...|.+...+|+...+++|++
T Consensus 178 v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf------------~~lKs~-k~P~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 178 VQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF------------GLLKSY-KMPCNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred EEEEecCCCCcceeeccCCCEEEEecCceeEEeccccc------------cceeec-cCccccccccccCCCceEEecCc
Confidence 99999999999999999999999988655544443222 112111 22346888899999999999999
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 226 (305)
|..++.||..++..+..+. .+|.++|.|+.|+|+|...++||+||+|++|....++..
T Consensus 245 d~~~~kfDy~TgeEi~~~n--kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYN--KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEEeccCCceeeecc--cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999988862 389999999999999999999999999999998766554
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=196.59 Aligned_cols=237 Identities=18% Similarity=0.240 Sum_probs=196.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+|.|-.++|+++.|.++++++++++.|+.+++|++.+.+...++.+|++.|+++.|......+++|+.|.++++||+.+.
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence 46677788999999999999999999999999999999999999999999999999887666999999999999999998
Q ss_pred CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.+..++-..+.+..+... ...++.+ .++..+..|+... ..+......+ +.|+++..++++..+.++
T Consensus 294 ~C~kt~l~~S~cnDI~~~--~~~~~Sg-----H~DkkvRfwD~Rs------~~~~~sv~~g-g~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 294 YCSKTVLPGSQCNDIVCS--ISDVISG-----HFDKKVRFWDIRS------ADKTRSVPLG-GRVTSLDLSMDGLELLSS 359 (459)
T ss_pred heeccccccccccceEec--ceeeeec-----ccccceEEEeccC------CceeeEeecC-cceeeEeeccCCeEEeee
Confidence 888888777777777665 2222222 2355577777643 3444444444 499999999999999999
Q ss_pred eCCCcEEEEeCCCCcEeeeecccc-CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e--CCCeeEEEe
Q 021925 165 GEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T--ERPVNAVTM 240 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~--~~~v~~~~~ 240 (305)
+.|..+.+.|+++.+....+.... ......+.+.|||++.++++||.||.|+||++.++++...+. . ...|++++|
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence 999999999999988777665221 112348899999999999999999999999999999998887 2 236999999
Q ss_pred cCCCCcEEEeeCCcE
Q 021925 241 SPLLDHVCIGEPQTI 255 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~ 255 (305)
+|.|..+++++.+..
T Consensus 440 ~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 440 NPSGSGLLSADKQKA 454 (459)
T ss_pred cCCCchhhcccCCcc
Confidence 999999999988776
No 65
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=9.9e-29 Score=204.67 Aligned_cols=244 Identities=16% Similarity=0.220 Sum_probs=185.4
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-------------EEecCCCcceEEEEEcC-CCcEEEEEeCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------GTYRGHNGAVWCCDVSR-DSMTLITGSAD 73 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-------------~~~~~~~~~v~~i~~~~-~~~~l~s~~~d 73 (305)
.|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 34456666777778777787777777777875443222 24678999999999999 88899999999
Q ss_pred CcEEEEecCCCC-------eeEEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec
Q 021925 74 QTAKLWNVETGA-------QLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (305)
Q Consensus 74 g~v~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (305)
++|++||+.++. .+..+. +...|.+++|+|.+ .++++++. ++.+.+|++.. ++....+.+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~-----DgtVrIWDl~t------g~~~~~l~~ 166 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA-----DMVVNVWDVER------GKAVEVIKC 166 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC-----CCEEEEEECCC------CeEEEEEcC
Confidence 999999997653 334444 77889999999975 56666553 56778888753 356677889
Q ss_pred cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccc-eEEEEEcCCCCEEEEEe----CCCeEEEEE
Q 021925 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGS----LDKSAKLWD 219 (305)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~iwd 219 (305)
|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|... +..+.|.+++..+++++ .|+.|++||
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 99999999999999999999999999999999999888776 56543 45678898887777654 479999999
Q ss_pred cCCce-EEEEEe--eCCCeeEEEecCCCCcEEEee-CCcEEEEEEeehhhhhhhh
Q 021925 220 ARTLE-LIKTYV--TERPVNAVTMSPLLDHVCIGE-PQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 220 ~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 270 (305)
+++.. ++.... ....+....|++++++|++|+ +|+. +++|++..+.
T Consensus 244 lr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-----Iriwdl~~~~ 293 (493)
T PTZ00421 244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-----IRCFELMNER 293 (493)
T ss_pred CCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-----EEEEEeeCCc
Confidence 98764 444333 334566678999999999887 4666 5555554433
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.4e-30 Score=195.22 Aligned_cols=229 Identities=20% Similarity=0.311 Sum_probs=195.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
..++++...|..+.+++|+.|..+.++|.++++.+..+++|...|+.+.++|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45888888888789999999999999999999999999999999999999999999999999999999998766555444
Q ss_pred e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 91 N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 91 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
. +..+|+.+..+|.+.+++.+++...-.... +. .+..+.... ...-.+++.+|+|||..+.+|..|
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd-----~~------~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD-----IS------SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEE-----cc------CCcEEEEEeeccccceeEEeeEcCCceEEeccCCC
Confidence 4 899999999999999999998744332222 21 122222222 233458999999999999999999
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--CCeeEEEecCCCC
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMSPLLD 245 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~ 245 (305)
|.|+|||+.++..+..+. +|.++|..++|+.+|-+|++++.|+.|++||++..+..+++..+ .++.++.|.+.|.
T Consensus 369 ~~vkiwdlks~~~~a~Fp---ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFP---GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred ceEEEEEcCCccccccCC---CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 999999999999888887 89999999999999999999999999999999999988888733 3699999999999
Q ss_pred cEEEeeCC
Q 021925 246 HVCIGEPQ 253 (305)
Q Consensus 246 ~l~~~~~~ 253 (305)
+|++++.+
T Consensus 446 ~L~~~g~~ 453 (506)
T KOG0289|consen 446 YLGIAGSD 453 (506)
T ss_pred eEEeecce
Confidence 99999544
No 67
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=194.91 Aligned_cols=237 Identities=22% Similarity=0.344 Sum_probs=202.9
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
++|.+.|.+++.++||++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999999999999999999999999999999999999998888999999999999999987766
Q ss_pred eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 87 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
+.++- |+..|..+....-++.+.++.. +....+|.+. .+....+.++.+.+.|++|-.+ ..+++|+
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgr-----DrT~rlwKi~-------eesqlifrg~~~sidcv~~In~-~HfvsGS 345 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGR-----DRTVRLWKIP-------EESQLIFRGGEGSIDCVAFIND-EHFVSGS 345 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccc-----cceeEEEecc-------ccceeeeeCCCCCeeeEEEecc-cceeecc
Confidence 65554 8888888888888887777743 5667777773 2455677889999999999864 5789999
Q ss_pred CCCcEEEEeCCCCcEeeeecccc---------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEEEEeeC
Q 021925 166 EDAIVRIWDTETGKLLKESDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVTE 232 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 232 (305)
.+|.|.+|++.+.+++....... .++..|++++..|...++++|+.+|.|++|-+..+ +++..+...
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence 99999999999998887665321 12238999999999999999999999999998876 566666778
Q ss_pred CCeeEEEecCCCCcEEEeeCCcEE
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+-|++++|+++|+.+++|.+...+
T Consensus 426 GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred cEEEEEEEccCCCEEEEecccccc
Confidence 889999999999999998777665
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=177.68 Aligned_cols=233 Identities=21% Similarity=0.304 Sum_probs=188.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+..||..+|..++.+.|...+++|+.|..|.+||+.+|+..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.
T Consensus 54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred eecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred --CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 85 --AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 85 --~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
++++.+. ....|.++..... .++.++. ++..+.++++... . ....-..+|++++|+++++..
T Consensus 134 s~ePiQildea~D~V~Si~v~~h--eIvaGS~-----DGtvRtydiR~G~------l--~sDy~g~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEH--EIVAGSV-----DGTVRTYDIRKGT------L--SSDYFGHPITSVSFSKDGNCS 198 (307)
T ss_pred CCCccchhhhhcCceeEEEeccc--EEEeecc-----CCcEEEEEeecce------e--ehhhcCCcceeEEecCCCCEE
Confidence 4566555 4556666665432 3333332 4555555554321 1 112335689999999999999
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccc--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CC-eeE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RP-VNA 237 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-v~~ 237 (305)
+.++.|+++++.|-.+|+.++.+. +|... -..+++......+++|++||.|++||+.....+..+.+. .. +.+
T Consensus 199 La~~l~stlrLlDk~tGklL~sYk---Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKLLKSYK---GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD 275 (307)
T ss_pred EEeeccceeeecccchhHHHHHhc---ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence 999999999999999999999888 55543 234466777778999999999999999999999988844 44 689
Q ss_pred EEecCCCCcEEEeeCCcE
Q 021925 238 VTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~ 255 (305)
++++|.-.-++++...+.
T Consensus 276 l~~hp~~~~f~~A~~~~~ 293 (307)
T KOG0316|consen 276 LSCHPTMDDFITATGHGD 293 (307)
T ss_pred eecccCccceeEecCCce
Confidence 999999888888877664
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.5e-30 Score=183.06 Aligned_cols=237 Identities=18% Similarity=0.290 Sum_probs=189.8
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCe
Q 021925 10 ERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 10 ~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
.+.+..++|+++ .+.+++++.||+++|||... ..++..++.|+.+|.++.|++ ++..++++|.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 466889999994 46788899999999999653 357888999999999999999 566788889999999999999999
Q ss_pred eEEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEE
Q 021925 87 LFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIIS 163 (305)
Q Consensus 87 ~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~ 163 (305)
+.++. +...|...+|+|.. ++++.++. ++..++|++.. .++... +..|...|.++.|+.-. +.++|
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg-----d~~l~lwdvr~-----~gk~~~-i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASG-----DGTLRLWDVRS-----PGKFMS-IEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccC-----CceEEEEEecC-----CCceeE-EEeccceeEeecccccCCcEEEe
Confidence 99888 78889999999954 55555554 66777888653 234444 88999999999999754 68889
Q ss_pred eeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEE-EEEe-eCCCeeEEE
Q 021925 164 AGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELI-KTYV-TERPVNAVT 239 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~ 239 (305)
|+.|+.|+.||+++- .++..+. +|.-.|+.+.|||.. ..|++++.|=+++|||...+... .+.. |.+-+..+.
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLD 285 (311)
T ss_pred cCCCceEEEEehhhccccceeec---CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccc
Confidence 999999999999974 3555554 899999999999954 57899999999999999865443 3344 677788999
Q ss_pred ecCCC-CcEEEeeCCcEEEEEEeehhh
Q 021925 240 MSPLL-DHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 240 ~~~~~-~~l~~~~~~~~~~~~~~~~~~ 265 (305)
|++.. .++|.++-|+. +++|+
T Consensus 286 ws~~~~~~vAs~gWDe~-----l~Vw~ 307 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDEL-----LYVWN 307 (311)
T ss_pred cccccCceeeecccccc-----eeeec
Confidence 99854 46777777776 55554
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=6.4e-29 Score=190.42 Aligned_cols=238 Identities=18% Similarity=0.242 Sum_probs=208.5
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
++.||...|+.+.++|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++.||+....|++++
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG 335 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC
Confidence 57899999999999999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred CeeEEEeeC---CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 85 AQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 85 ~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
..+...... -.+.+.+|+|||.++..+.. ++.+++|++.. ...+..+.+|.++|..++|+.+|-+|
T Consensus 336 ~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-----d~~vkiwdlks------~~~~a~Fpght~~vk~i~FsENGY~L 404 (506)
T KOG0289|consen 336 SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-----DGVVKIWDLKS------QTNVAKFPGHTGPVKAISFSENGYWL 404 (506)
T ss_pred cEEEEEeeccccceeEEeeEcCCceEEeccCC-----CceEEEEEcCC------ccccccCCCCCCceeEEEeccCceEE
Confidence 998888764 34889999999999999876 67788888853 34667788999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--CceEEEEEe-eCCCeeEE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TLELIKTYV-TERPVNAV 238 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~ 238 (305)
+++++|+.|++||+|..+..+++... ....+.++.|.+.|.+|+.++.|=+|++++-. +..++..+. +.+..+++
T Consensus 405 at~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 405 ATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV 482 (506)
T ss_pred EEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence 99999999999999998888877642 33479999999999999999888778877744 445666665 66688999
Q ss_pred EecCCCCcEEEeeCCcE
Q 021925 239 TMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~ 255 (305)
.|....+++++++.+..
T Consensus 483 ~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 483 RFGEHAQYLASTSMDAI 499 (506)
T ss_pred eecccceEEeeccchhh
Confidence 99999999999987765
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.9e-29 Score=203.02 Aligned_cols=293 Identities=21% Similarity=0.275 Sum_probs=210.5
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
++.+.||+..|+++.|+..|..|++||.|+.|.+||+-...-+.++++|++.|+..-|..+.+.+++++.|+.|++||++
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 46789999999999999999999999999999999998877788899999999998888877888999999999999987
Q ss_pred CCCeeEE-------------------------------------------------------------------------
Q 021925 83 TGAQLFT------------------------------------------------------------------------- 89 (305)
Q Consensus 83 ~~~~~~~------------------------------------------------------------------------- 89 (305)
+..+..+
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence 1111111
Q ss_pred --------------------------------------------------------------------------------
Q 021925 90 -------------------------------------------------------------------------------- 89 (305)
Q Consensus 90 -------------------------------------------------------------------------------- 89 (305)
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence
Q ss_pred ---------------------------E---eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-------
Q 021925 90 ---------------------------F---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------- 132 (305)
Q Consensus 90 ---------------------------~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 132 (305)
+ .|...|++++++.+...++.+.++.+.++......-+.....
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~ 419 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASK 419 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEE
Confidence 0 133445666666666666666544433332211111110000
Q ss_pred -----------C----------CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-----CcEee--ee
Q 021925 133 -----------D----------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-----GKLLK--ES 184 (305)
Q Consensus 133 -----------~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~--~~ 184 (305)
. .....+...+.|.+.|.+++.+||++.+++|+.|.+|++||..- +...+ .+
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 0 11123344568999999999999999999999999999999752 11111 11
Q ss_pred cc--ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925 185 DK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 185 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (305)
.. .-.....|.++.+||||++|+++=.|.+++||-+.+.+-.-++. |.-||.|+.++||++.+++|+.|.. +
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-----V 574 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-----V 574 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-----e
Confidence 10 00245789999999999999999999999999999998877776 8999999999999999999999998 8
Q ss_pred ehhhhhhhhhhhhccccccc----ccccccccccCCCCceEEE
Q 021925 262 YLFVLFLDILFYNLYCSASR----KYIYDDLLNFDAGPQHFIF 300 (305)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 300 (305)
++|.+.+.---..+..+.+. .|++....-|..+...-+-
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence 88888776554444443222 3444333344444444333
No 72
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-30 Score=182.28 Aligned_cols=248 Identities=21% Similarity=0.308 Sum_probs=192.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---eeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw 79 (305)
+..+|++.|.++...--|+.|||++.|++|+|+..+++ +.+.++.+|.++|..++|.. -|..|++++.||+|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 35689999999999989999999999999999998764 46789999999999999965 78999999999999999
Q ss_pred ecCCCCeeEEEe---eCCCceEEEEecCC--ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 80 NVETGAQLFTFN---FDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 80 d~~~~~~~~~~~---~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
.-++++-.+... +...+++++|.|.+ ..+++++. ++.+.+...... ...........|.-.+++++|
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS-----DG~vsvl~~~~~---g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS-----DGKVSVLTYDSS---GGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC-----CCcEEEEEEcCC---CCccchhhhhccccccceeee
Confidence 988774333322 88899999999964 45555543 444444444332 122334456789999999999
Q ss_pred cCC---C-----------CEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCC----CEEEEEeCCCe
Q 021925 155 GPL---N-----------RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADG----SHFLTGSLDKS 214 (305)
Q Consensus 155 ~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 214 (305)
.|. | +.|++|+.|..|+||+..+++- -+.+. +|...|+.++|.|.- ..||+++.||+
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~---~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE---GHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh---hcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 986 4 5699999999999999987632 22343 899999999999953 46999999999
Q ss_pred EEEEEcCCc--eEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 215 AKLWDARTL--ELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 215 i~iwd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+.||..+.. .-..++. ....+..++||+.|+.|+++++++. +.+|.-..
T Consensus 235 viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk-----vtlwke~~ 287 (299)
T KOG1332|consen 235 VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK-----VTLWKENV 287 (299)
T ss_pred EEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE-----EEEEEeCC
Confidence 999986622 1111121 5677999999999999999998887 55554433
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.2e-30 Score=204.64 Aligned_cols=249 Identities=23% Similarity=0.354 Sum_probs=205.4
Q ss_pred ccccceE---EEEEcC-CCCEEEEeeCCCceEEEEcCCCe------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925 8 GHERPLT---YLKYNK-DGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (305)
Q Consensus 8 ~h~~~v~---~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~ 77 (305)
.|...|. ++..+. ++++|+|||.||.|++|+..... ...+++.|.+.|.++....+++.|+++|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444555 444544 67789999999999999876422 3667888999999999999999999999999999
Q ss_pred EEecCCCC--eeEEEe-eCCCceEEEE-ecCCceEEEeCCcceeeeeeEEEEEeecccC----CCCCceEEEEe-ccCCC
Q 021925 78 LWNVETGA--QLFTFN-FDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDPA----DQGGESVLILK-GPQGR 148 (305)
Q Consensus 78 vwd~~~~~--~~~~~~-~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~ 148 (305)
+|+...+. +..++. |...|.|+++ .++...++.++ ++..+.+|++..... .........+. ++..+
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgG-----LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGG-----LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecC-----CCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 99998773 445554 8999999999 55555665554 577788888874422 11122222333 88999
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (305)
Q Consensus 149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 228 (305)
|++++.++.|..+++|+..+.+++||.++.+.+..++ +|...|..+..++||..++++|+||+|++||+...+++.+
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 9999999999999999999999999999999998888 8999999999999999999999999999999999999999
Q ss_pred Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehh
Q 021925 229 YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLF 264 (305)
Q Consensus 229 ~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 264 (305)
+. |...|+++..+|+-.++.+|+.++.+....++-.
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 88 8888999999999999999999999766655543
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.6e-29 Score=187.64 Aligned_cols=253 Identities=20% Similarity=0.333 Sum_probs=203.4
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC---CcEEEEEeCCCcEEEEecCCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~v~vwd~~~~ 84 (305)
-|.+.|.++.-. ++.|++|+.||.+++||. .|+...++.+|.++|.+++|... ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 578888888877 679999999999999995 58899999999999998888542 236999999999999998877
Q ss_pred CeeEEE-----eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc-------------------CCCCCceEE
Q 021925 85 AQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP-------------------ADQGGESVL 140 (305)
Q Consensus 85 ~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 140 (305)
+..... .|...|.++...+++..++.++- +..+.+|...... ......++.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~-----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW-----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecc-----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 543322 38889999999999999888763 5555666521111 112345778
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
.+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+. ....++++..+|..++|++|+.|..+++||.
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCC
Confidence 8999999999999998 6679999999999999999999988886 5788999999999999999999999999999
Q ss_pred CCce---EEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhhhhh-hhhhcccc
Q 021925 221 RTLE---LIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFLDI-LFYNLYCS 278 (305)
Q Consensus 221 ~~~~---~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (305)
+++. ...++. |...|.++.|+|...+ +++|+.|+. +++|+..... .+|.+...
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-----~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-----VKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-----EEEEEeccCCCcceeeccC
Confidence 8763 223444 8889999999998877 555677776 7777776655 55555555
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=201.46 Aligned_cols=206 Identities=19% Similarity=0.350 Sum_probs=172.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~ 83 (305)
++.||..+|.+++|+++|..+++++.|+.+++||+++|+++..+. -...+.|+.|+|++ +.+++|+.|+.|+.||+++
T Consensus 253 tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 253 TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence 578999999999999999999999999999999999999999987 45678999999988 8899999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC----------------------------
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---------------------------- 134 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 134 (305)
++.++.+. +-+.+..+.|.++++.++.+++. ..+.+|.........
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd-----ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDD-----KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCCceEeeeccC-----ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence 99888887 77899999999999999998873 344455443221100
Q ss_pred ------------CCceEEEEeccC--CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925 135 ------------GGESVLILKGPQ--GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200 (305)
Q Consensus 135 ------------~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 200 (305)
.......+++|. +.-..+.|||||++|++|+.||.+.+||.++-+.+..+. .|.+++..+.|+
T Consensus 407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~v~wH 483 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIGVDWH 483 (503)
T ss_pred ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc---cCCcceEEEEec
Confidence 001112234443 445678999999999999999999999999999988888 899999999999
Q ss_pred CCC-CEEEEEeCCCeEEEEE
Q 021925 201 ADG-SHFLTGSLDKSAKLWD 219 (305)
Q Consensus 201 ~~~-~~l~~~~~dg~i~iwd 219 (305)
|.. ..+|+++.||.|++||
T Consensus 484 P~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 484 PVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCcceeEecccCceeEecC
Confidence 954 5799999999999996
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=168.50 Aligned_cols=245 Identities=18% Similarity=0.251 Sum_probs=190.6
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------C-----e----eeEEecCCCcceEEEEEcCCCcEE
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G-----E----RLGTYRGHNGAVWCCDVSRDSMTL 67 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------~-----~----~~~~~~~~~~~v~~i~~~~~~~~l 67 (305)
.+.+......|.+++|+|.|.+.|.|+..++.+|-.... + + ..++-+.|.+.|.|.+|+|+|++|
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence 345556678899999999999999999999998874321 1 1 112334689999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCee-----EEEe-eCCCceEEEEecC----CceEEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925 68 ITGSADQTAKLWNVETGAQL-----FTFN-FDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137 (305)
Q Consensus 68 ~s~~~dg~v~vwd~~~~~~~-----~~~~-~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (305)
++|+.|++|++.-+....+. ..++ +.+.++.++|..+ +.+++.++.+. ..+.+.+ -..++
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd----c~iy~td------c~~g~ 174 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD----CKIYITD------CGRGQ 174 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc----ceEEEee------cCCCC
Confidence 99999999999866533221 2233 7889999999764 34555444321 1222222 14567
Q ss_pred eEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccC----CccceEEEEEcCCCCEEEEEeCCC
Q 021925 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG----HKKTITSLAKAADGSHFLTGSLDK 213 (305)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg 213 (305)
..+.+.+|.+.|.++ ++-++-++++|++|.+|++||++-..++..+..... ....|.+++..|.|++|++|-.|.
T Consensus 175 ~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 788899999999876 344588999999999999999998888887753211 236799999999999999999999
Q ss_pred eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925 214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFM 258 (305)
Q Consensus 214 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 258 (305)
...+||++.+++++.+. |...|.|+.|+|...++++|+.|..+.+
T Consensus 254 sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence 99999999999999998 8899999999999999999998887433
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=204.64 Aligned_cols=242 Identities=26% Similarity=0.431 Sum_probs=207.3
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
+.||.+.|.++++..-+..+++|+.|.++++||..+|++...+.+|.+.|.++...+ ..+++|+.|.+|++|+++++.
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc
Confidence 789999999999988788999999999999999999999999999999999998764 478889999999999999999
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.+..+. +..+|.++... +.+++.++. ++.+.+|+.. ..+++..+.+|...|.++.+.+. +.+++|
T Consensus 323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~-----d~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg 388 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD--EPLLVSGSY-----DGTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSG 388 (537)
T ss_pred eEEEeccccccEEEEEec--CCEEEEEec-----CceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEee
Confidence 999999 99999999998 555555543 5567778775 56899999999999999988765 889999
Q ss_pred eCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee--CCCeeEEEec
Q 021925 165 GEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMS 241 (305)
Q Consensus 165 ~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~ 241 (305)
+.|+.|++||+++. +++..+. +|...+..+.+ .++.|++++.|++|++||..++++++.+.. ...|.++++.
T Consensus 389 s~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 99999999999999 8888887 78888866655 467999999999999999999999999985 3677777776
Q ss_pred CCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhc
Q 021925 242 PLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNL 275 (305)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
...+++++.++. +++|++.......++
T Consensus 464 --~~~il~s~~~~~-----~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 464 --KEEILCSSDDGS-----VKLWDLRSGTLIRTL 490 (537)
T ss_pred --cceEEEEecCCe-----eEEEecccCchhhhh
Confidence 456777777776 677776666655444
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=180.96 Aligned_cols=240 Identities=18% Similarity=0.310 Sum_probs=199.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc--EEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~v~vwd~~ 82 (305)
.++.|.++|++++.+ +.++|+|+.|-+|+|||+++...+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 478999999999985 89999999999999999999999999999999999999998654 89999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
.-.++..++ +...|+.++.+|.+++.+..++ +..++.|++.+... ..+..+ ....+.+.|+|.|.++
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~-----D~~lr~WNLV~Gr~----a~v~~L---~~~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGG-----DQVLRTWNLVRGRV----AFVLNL---KNKATLVSWSPQGDHF 183 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcC-----CceeeeehhhcCcc----ceeecc---CCcceeeEEcCCCCEE
Confidence 998888888 8888999999999999888776 56677777764321 111111 2233449999999999
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 240 (305)
+.+..+ .|-+|.+.+......+. ....+.++.|- ++..|++|+.|+.|++||..+..+...+. |..+|.++.+
T Consensus 184 ~v~~~~-~i~i~q~d~A~v~~~i~----~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 184 VVSGRN-KIDIYQLDNASVFREIE----NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EEEecc-EEEEEecccHhHhhhhh----ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 888775 58999998877776665 33556677665 56789999999999999999998888887 9999999884
Q ss_pred --cCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 241 --SPLLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 241 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
.|++.+|+++++||. +.+|+..++
T Consensus 258 ~~~~~~~~lvTaSSDG~-----I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGF-----IKVWDIDME 283 (362)
T ss_pred EecCCceEEEEeccCce-----EEEEEcccc
Confidence 578899999999998 777777666
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.2e-29 Score=179.32 Aligned_cols=238 Identities=16% Similarity=0.197 Sum_probs=195.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-----CCcEEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-----DQTAKLW 79 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----dg~v~vw 79 (305)
++.||++.|.|+..+.+.+.+++|+.|.++++||+++|+++.+++ ...+|..+.|+++|++++.+.. .+.|.++
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 478999999999999999999999999999999999999999998 6789999999999988776644 4779999
Q ss_pred ecC-------CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 80 NVE-------TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 80 d~~-------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
|++ +.++...+. ..+.+..+.|.|-+..++.+.. .+.+..|+.... .+.+...+.|...|+.
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-----~G~is~~da~~g-----~~~v~s~~~h~~~Ind 195 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-----DGSISIYDARTG-----KELVDSDEEHSSKIND 195 (327)
T ss_pred EccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-----CCcEEEEEcccC-----ceeeechhhhcccccc
Confidence 998 445555555 6788999999999999999876 667777776532 2455566789999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe--EEEEEcCCc------
Q 021925 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS--AKLWDARTL------ 223 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~------ 223 (305)
++++|+..++++++.|.+-++||.++-+.++++. ...+|++.+++|....++.|+.... |.--+.+.+
T Consensus 196 ~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF 271 (327)
T KOG0643|consen 196 LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF 271 (327)
T ss_pred ccccCCcceEEecccCccceeeeccceeeEEEee----ecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence 9999999999999999999999999999999996 6789999999997767666554322 222222222
Q ss_pred ------eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925 224 ------ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 224 ------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 257 (305)
+.+..++ |-+||++++|+|+|+..++|+.|+...
T Consensus 272 yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 272 YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 3444455 778999999999999999999999753
No 80
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=184.84 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=192.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 92 (305)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|+|.|..+++||+..|.+++.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 67999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec--c----CCCeeEEEEcCCCCEEEEeeC
Q 021925 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--P----QGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 93 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~i~~~~~~~~~~~l~~~~~ 166 (305)
+++|..+.|+|.....+++.- +.....+..... +.+..-. . .....+..|.+.|+++++|..
T Consensus 106 ~spv~~~q~hp~k~n~~va~~----~~~sp~vi~~s~--------~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATI----MEESPVVIDFSD--------PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred cCccceeeeccccCCeEEEEE----ecCCcEEEEecC--------CceeeccCCCccccccccccccccCCCCEEEEecC
Confidence 999999999996654444431 111111111110 0111100 0 111223468899999999999
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-------eEE--EEEe---eCCC
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-------ELI--KTYV---TERP 234 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~---~~~~ 234 (305)
.|.+.++|..+.+++..++.. ....|..+.++..|++|+.-+.|..||.|+++.- ++. +.+. ....
T Consensus 174 KGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred cceEEEEecchheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999999999999998888732 2478999999999999999999999999998732 111 2222 2334
Q ss_pred eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccc
Q 021925 235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSA 279 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (305)
=.+++|+.+|.++++|+..-.. +++|......+..-+++..
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHa----LYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHA----LYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hhheeecCCccEEEecccccee----EEEEecCCcceeeeecCCc
Confidence 4688999999999998855544 8888887777776666544
No 81
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.5e-27 Score=196.57 Aligned_cols=217 Identities=12% Similarity=0.120 Sum_probs=165.3
Q ss_pred eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCC--------eeEEEe-eCCCce
Q 021925 28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGA--------QLFTFN-FDSPAR 97 (305)
Q Consensus 28 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~-~~~~v~ 97 (305)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+. +...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556789999998887888899999999999999996 7899999999999999997642 122333 778899
Q ss_pred EEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925 98 SVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176 (305)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 176 (305)
+++|+|++..++ +++. ++.+.+|++... +....+. |...|.+++|+|+|++|++++.|+.|+|||++
T Consensus 130 sVaf~P~g~~iLaSgS~-----DgtIrIWDl~tg------~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGF-----DSFVNIWDIENE------KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEECCCCCeEEEEEeC-----CCeEEEEECCCC------cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 999999887654 4443 567778887532 3333443 56789999999999999999999999999999
Q ss_pred CCcEeeeeccccCCccceEE-----EEEcCCCCEEEEEeCCC----eEEEEEcCC-ceEEEEEeeCCCee---EEEecCC
Q 021925 177 TGKLLKESDKETGHKKTITS-----LAKAADGSHFLTGSLDK----SAKLWDART-LELIKTYVTERPVN---AVTMSPL 243 (305)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~v~---~~~~~~~ 243 (305)
+++.+..+. +|.+.+.. ..|++++.+|++++.|+ +|++||+++ .+++..+.+..... .....++
T Consensus 198 sg~~i~tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 198 KQEIASSFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred CCcEEEEEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence 999888876 67665433 33568889999988774 799999995 56776665433322 2333456
Q ss_pred CCcEEEeeCCcEEEEE
Q 021925 244 LDHVCIGEPQTIKFML 259 (305)
Q Consensus 244 ~~~l~~~~~~~~~~~~ 259 (305)
+.++++|++|+...++
T Consensus 275 g~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYY 290 (568)
T ss_pred CCEEEEEECCCeEEEE
Confidence 8888888888874333
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=191.61 Aligned_cols=208 Identities=25% Similarity=0.464 Sum_probs=159.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
++.||..+|..+.||||.++|++|+.|..+.+||+.+|+....+.. |...+.+++|.|||..+++|+.|+++..||+..
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 5789999999999999999999999999999999999998877753 457899999999999999999999999999874
Q ss_pred CCeeEEEe--eCCCceEEEEecCCceEEEeCC-cceee-----------------------------------eeeEEEE
Q 021925 84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTD-PFMEL-----------------------------------NSAIHVK 125 (305)
Q Consensus 84 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~-~~~~~-----------------------------------~~~~~~~ 125 (305)
. .....+ ....+.+++.++||+.++.... ..+.. ...+..|
T Consensus 344 n-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 344 N-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred c-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 3 333333 2345667777777766555432 11111 2233344
Q ss_pred EeecccCCCCCceEEEEeccCCC--eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-
Q 021925 126 RIARDPADQGGESVLILKGPQGR--INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA- 201 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~- 201 (305)
++. ....++.+.||+.. +-.-+|.. +..++++|++|++|+||+..+++++..+. +|...|++++|+|
T Consensus 423 Dl~------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 423 DLE------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTVNCVSWNPA 493 (519)
T ss_pred ecc------hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---CCcceeeEEecCCC
Confidence 432 23445556666644 22334443 34799999999999999999999999998 9999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCC
Q 021925 202 DGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 202 ~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+-.++|+++.||+|+||....
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 456799999999999998754
No 83
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=3e-28 Score=178.31 Aligned_cols=208 Identities=18% Similarity=0.298 Sum_probs=169.7
Q ss_pred ecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCee----------eE-----EecCCCcceEEEEEcC-CCcEEE
Q 021925 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER----------LG-----TYRGHNGAVWCCDVSR-DSMTLI 68 (305)
Q Consensus 6 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~----------~~-----~~~~~~~~v~~i~~~~-~~~~l~ 68 (305)
.+.|.+.|+++...+ .|+++++|+.||.|.+||+++... +. .-.+|+-.|.++.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 467999999999998 889999999999999999985321 11 1135788999999999 777899
Q ss_pred EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
+++.|.+++|||..+.+....++.++.|.+-+++|- ..+++++.. ...+++-++ ..+...+.+.+|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr-----~~~VrLCDi------~SGs~sH~LsGH 187 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR-----DVQVRLCDI------ASGSFSHTLSGH 187 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecC-----CCcEEEEec------cCCcceeeeccc
Confidence 999999999999999999999999999999999984 445666554 223333333 456788899999
Q ss_pred CCCeeEEEEcCCCCE-EEEeeCCCcEEEEeCCCC-cEeee-----------eccccCCccceEEEEEcCCCCEEEEEeCC
Q 021925 146 QGRINRAVWGPLNRT-IISAGEDAIVRIWDTETG-KLLKE-----------SDKETGHKKTITSLAKAADGSHFLTGSLD 212 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 212 (305)
.+.|.++.|+|...+ |++|+.||.|++||++.. .+... ++....|.+.|+.++|..++.++++++.|
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 999999999998875 668999999999999854 22222 22234688999999999999999999999
Q ss_pred CeEEEEEcCCce
Q 021925 213 KSAKLWDARTLE 224 (305)
Q Consensus 213 g~i~iwd~~~~~ 224 (305)
.++++|+..+|+
T Consensus 268 ~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 268 DRIRVWNMESGR 279 (397)
T ss_pred cceEEeecccCc
Confidence 999999998764
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=177.65 Aligned_cols=238 Identities=16% Similarity=0.199 Sum_probs=185.0
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc--EEEEEeCCCcEEEEe
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWN 80 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~v~vwd 80 (305)
|.....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|..+.|-+... .|+|||.|++|+.||
T Consensus 65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 33456799999999999999999999999999999999995 566778999999999988554 899999999999999
Q ss_pred cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
.+...++.++..+..+.++..-..-..++++ ...+.++.+..... +.......-+-.+.+++..++...
T Consensus 144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata-------~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~ 212 (347)
T KOG0647|consen 144 TRSSNPVATLQLPERVYAADVLYPMAVVATA-------ERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDG 212 (347)
T ss_pred cCCCCeeeeeeccceeeehhccCceeEEEec-------CCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCc
Confidence 9999999999999998888765443333333 23344444432211 111111223446789999999988
Q ss_pred EEEeeCCCcEEEEeCCCCcEe--eeecccc------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925 161 IISAGEDAIVRIWDTETGKLL--KESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T 231 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 231 (305)
.+.|+.+|.+.+..+..+.+. ..++.++ +.-..|++++|+|....|+|++.||+..+||-.....+++.. +
T Consensus 213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 899999999999998876332 2222111 112468999999999999999999999999988887777766 8
Q ss_pred CCCeeEEEecCCCCcEEEeeC
Q 021925 232 ERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+.+|++.+|+.+|.+++-+.+
T Consensus 293 ~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 293 PQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CCccceeEecCCCCEEEEEee
Confidence 999999999999999887753
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.2e-28 Score=208.35 Aligned_cols=213 Identities=23% Similarity=0.354 Sum_probs=174.2
Q ss_pred CceEecccccceEEEEEcCCCCEEEEee--CCCceEEEEcCC------------CeeeEEecCCCcceEEEEEcCCCcEE
Q 021925 2 RPILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADN------------GERLGTYRGHNGAVWCCDVSRDSMTL 67 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~~------------~~~~~~~~~~~~~v~~i~~~~~~~~l 67 (305)
+|..+..++..|.++..+|+|..+|||+ .||.++||+.+. .+.+.+...|.+.|.|+.|+|||++|
T Consensus 5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred cccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence 4555666678899999999999999999 899999997652 23456677899999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925 68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (305)
Q Consensus 68 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (305)
|+|+.|+.|.||+......-..+ .+.+ + ....+..+.+..+.+|.+
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~f----------gs~g---------------~---------~~~vE~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVF----------GSTG---------------G---------AKNVESWKVVSILRGHDS 130 (942)
T ss_pred eeccCcceEEEeeecccCCcccc----------cccc---------------c---------ccccceeeEEEEEecCCC
Confidence 99999999999997641000000 0000 0 001133467788899999
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
.|..++|+|++.++++++.|++|.+||.++.+.++.+. +|.+.|..+.|+|-|++||+-+.|++|++|++.+....+
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR---GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeeee---cccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 99999999999999999999999999999998888887 899999999999999999999999999999988877776
Q ss_pred EEe-------eCCCeeEEEecCCCCcEEEee
Q 021925 228 TYV-------TERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 228 ~~~-------~~~~v~~~~~~~~~~~l~~~~ 251 (305)
.+. ....+..+.|||||++|++..
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchh
Confidence 665 223478899999999999873
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=203.15 Aligned_cols=208 Identities=22% Similarity=0.303 Sum_probs=165.9
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.+.||.+.|.++.||.++ +|++++.|++|++|++...++++.|. |.+.|+|++|+| |.+++++|+-||.++||++..
T Consensus 364 ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d 441 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD 441 (712)
T ss_pred hhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence 478999999999999876 99999999999999999999999998 999999999999 889999999999999999998
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE----EEeccCCCeeEEEEcCCC-
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQGRINRAVWGPLN- 158 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~- 158 (305)
.+.+.-......|++++|.|+|+..++++-. +...++.......... ..+. .-..|. .|+.+.|.|..
T Consensus 442 ~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~-----G~C~fY~t~~lk~~~~-~~I~~~~~Kk~~~~-rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 442 KKVVDWNDLRDLITAVCYSPDGKGAVIGTFN-----GYCRFYDTEGLKLVSD-FHIRLHNKKKKQGK-RITGLQFFPGDP 514 (712)
T ss_pred CeeEeehhhhhhheeEEeccCCceEEEEEec-----cEEEEEEccCCeEEEe-eeEeeccCccccCc-eeeeeEecCCCC
Confidence 8888777788999999999999999998743 3333333221110000 0000 011223 79999999865
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
..+++.+.|..|+|+|.++.+++..+........ -....|+.||++|++++.|..|++|+...
T Consensus 515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 4578888999999999998888888874433333 34568899999999999999999999743
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.1e-27 Score=179.16 Aligned_cols=237 Identities=24% Similarity=0.387 Sum_probs=185.8
Q ss_pred EecccccceEEEEEcCCC---CEEEEeeCCCceEEEEcCCCeee----EEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925 5 LMKGHERPLTYLKYNKDG---DLLFSCAKDHTPTVWFADNGERL----GTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~---~~l~s~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~ 77 (305)
.+.||.++|.+++|.... ..+++++.|.++++|..+.++.. +.-.+|...|.++...++|..+++|+.|.+|+
T Consensus 139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lk 218 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLK 218 (423)
T ss_pred EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceee
Confidence 578999999998885533 35999999999999988876532 33358999999999999999999999999999
Q ss_pred EEecCC-------------------------CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc
Q 021925 78 LWNVET-------------------------GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131 (305)
Q Consensus 78 vwd~~~-------------------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (305)
+|+.++ ..++..+. |..+|.++.|++.+....++ .+..+..|++...
T Consensus 219 iWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~S------wDHTIk~WDletg- 291 (423)
T KOG0313|consen 219 IWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVS------WDHTIKVWDLETG- 291 (423)
T ss_pred ecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeec------ccceEEEEEeecc-
Confidence 999321 11233333 77889999999954444443 3677888888643
Q ss_pred CCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe
Q 021925 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS 210 (305)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 210 (305)
.....+. ....++++..+|..++|++|+.|..+++||.+++.-........+|...|.++.|+|... .|++|+
T Consensus 292 -----~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 292 -----GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred -----cceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 2222222 345789999999999999999999999999998653322223348999999999999654 588999
Q ss_pred CCCeEEEEEcCCce-EEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 211 LDKSAKLWDARTLE-LIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 211 ~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.|+++++||+++.+ ++..+. |...|.++.|+.. ..|++|+.|..
T Consensus 366 ~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~ 411 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNK 411 (423)
T ss_pred cCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcce
Confidence 99999999999887 888887 8999999999865 47888888876
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=180.15 Aligned_cols=245 Identities=25% Similarity=0.438 Sum_probs=198.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC--
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-- 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~-- 82 (305)
.+.||++.|..++-......+.+++.|.+.+||.++++.++.++.+|.+.|+++.|++.+.++++++.|++-.||...
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN 222 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence 478999999999998888899999999999999999999999999999999999999999999999999999999721
Q ss_pred --CCC------------------------------------eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925 83 --TGA------------------------------------QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (305)
Q Consensus 83 --~~~------------------------------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
..+ ++..+. +...|.+..|...+..++.++ ++....
T Consensus 223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS-----WDRTAn 297 (481)
T KOG0300|consen 223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS-----WDRTAN 297 (481)
T ss_pred CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee-----ccccce
Confidence 000 011111 344555556666666666553 344555
Q ss_pred EEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (305)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 203 (305)
+|+. +.++.+..+.+|....+.++-+|..+++++++.|.+.++||.+. .+.....+.+|...|+++.|..+.
T Consensus 298 lwDV------Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 298 LWDV------ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred eeee------ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC
Confidence 5665 45788999999999999999999999999999999999999983 344433444999999999998765
Q ss_pred CEEEEEeCCCeEEEEEcCCc-eEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 204 SHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 204 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
.+++|+.|.+|++||+++. .++.+++..++++.++.+..++.|+.-.++.. +.++++..
T Consensus 370 -~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRq-----vRlfDlnG 429 (481)
T KOG0300|consen 370 -RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQ-----VRLFDLNG 429 (481)
T ss_pred -ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCce-----EEEEecCC
Confidence 5899999999999999976 57888999999999999999999988876665 44554443
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=183.94 Aligned_cols=202 Identities=19% Similarity=0.308 Sum_probs=177.7
Q ss_pred EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|+.+|..+.|+| ++..+++|+.|+.+++||+.+......+.+|++.|.|.+|+| ++..++|||.||+|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 4789999999999999 556778888899999999999887778999999999999999 55689999999999999999
Q ss_pred CC-CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 83 TG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 83 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
+. ..+.+++++.+|..+.+-|.|..++.+++ ..+++|++.. .++.+.....|...|+|+++..++..|
T Consensus 185 ~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG------n~vkVWDl~~-----G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 185 SLTSRVVELNHGCPVESVLALPSGSLIASAGG------NSVKVWDLTT-----GGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred cCCceeEEecCCCceeeEEEcCCCCEEEEcCC------CeEEEEEecC-----CceehhhhhcccceEEEEEeecCCceE
Confidence 87 78888999999999999999999999885 4567777753 234445555699999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
++|+-|+.+++||+.+.+.+..+. -.++|.+++.+|+++.++.|..||.+.+-+..
T Consensus 254 lS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eecccccceEEEEccceEEEEeee----cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 999999999999998889888885 78999999999999999999999988777443
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.6e-27 Score=183.59 Aligned_cols=245 Identities=13% Similarity=0.221 Sum_probs=187.0
Q ss_pred cccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe----------eeEEecCCCcceEEEEEcCC-CcEEEEEeCCC
Q 021925 7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE----------RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQ 74 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~----------~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg 74 (305)
--|.+.|+.+++-|. ...+|+.+..+.|.|||..+.. +-.++.+|...=.+++|++. .-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 358999999999994 4577778889999999976421 22377889987788999984 45899999999
Q ss_pred cEEEEecCCCCe-------eEEEe-eCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 75 TAKLWNVETGAQ-------LFTFN-FDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 75 ~v~vwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
+|.+||+..... ...+. +...|..++|++-...++ .+++ ++.+.+|+++.. ..++.....+|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d-----d~~L~iwD~R~~----~~~~~~~~~ah 271 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD-----DGKLMIWDTRSN----TSKPSHSVKAH 271 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC-----CCeEEEEEcCCC----CCCCccccccc
Confidence 999999875433 22233 888999999999655444 4443 556677777652 44667778899
Q ss_pred CCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCC
Q 021925 146 QGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 146 ~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 222 (305)
.+.++|++|+|-+ ..||+|+.|++|++||+|+-+ ++..+. +|...|.++.|+|+ ...||+++.|+++.+||+..
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE---GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc---CCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9999999999965 678899999999999999743 455555 89999999999995 45789999999999999874
Q ss_pred ceE--------------EEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 223 LEL--------------IKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 223 ~~~--------------~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
-.. +.... |...|..+.|+|+.+++++.-.++.. +.+|...
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~----LqIW~~s 404 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI----LQIWQMA 404 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce----EEEeecc
Confidence 221 22222 66789999999999987766544444 6666543
No 91
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.4e-26 Score=173.88 Aligned_cols=210 Identities=19% Similarity=0.262 Sum_probs=174.8
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
+..+.||++.|+++.|+.+|.+||||+.+|.|+||+..++.....+...-+.+.=+.|+|.+..|+.|+.||.+-+|.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 35688999999999999999999999999999999999999888887666778889999999999999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-----------------------------
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA----------------------------- 132 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 132 (305)
++...+.+. +..++.+=.|.|+|+.++++.+ ++.+.+|+......
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-----dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-----DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred CcceeeEecCCCCCcccccccCCCceEEEEec-----CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 876666666 8888999999999999888765 22222222211100
Q ss_pred ------------------C------------------------------------------CCCceEEEEeccCCCeeEE
Q 021925 133 ------------------D------------------------------------------QGGESVLILKGPQGRINRA 152 (305)
Q Consensus 133 ------------------~------------------------------------------~~~~~~~~~~~~~~~i~~~ 152 (305)
. ......+..-.|...|..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 0 0001113334677889999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
.|-+ ..+|++++.+|.|+.||.++|+++..+. +|...|.+++++|+.++++++|.|++.+|++..
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEe---cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9998 7899999999999999999999999998 999999999999999999999999999999864
No 92
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-26 Score=192.48 Aligned_cols=243 Identities=19% Similarity=0.277 Sum_probs=200.2
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
.+|+..-+.++|.|+|+.|++++.||.|++|+..+. +...++..+...|.+++.. +.+|++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 379999999999999999999999999999987655 4444555577888888765 4489999999999999999887
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.-..+. ..-++++++++.+|++++.++++ ..+.+.+.. .......+++|+.+|.++.++|++++||+.
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD-----~~vK~~~~~------D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDD-----TAVKLLNLD------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCc-----eeEEEEecc------ccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 764443 78889999999999999999873 334443332 235667889999999999999999999999
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccC-----CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCee
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETG-----HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVN 236 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~ 236 (305)
+-||.|++||+.++.....+..... ....+..++|+|+|..|+..+.|+.|++|+..+++....+. +...+.
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 9999999999999887766653221 14567889999998889999999999999999999888887 445599
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
+++|+|+|+|||+++-++.+.+|.+.
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999999985544444
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-28 Score=193.80 Aligned_cols=247 Identities=19% Similarity=0.274 Sum_probs=206.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEE-cCCCcEEEEEeCCCcEEEEec
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~-~~~~~~l~s~~~dg~v~vwd~ 81 (305)
.++.|.+.|+++....+|+.|+++|.|.+|++|+...+ -+..++..|.+.|.|++. .++...+|+||.|+.|.+||+
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi 147 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI 147 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence 47889999999999999999999999999999998876 577888999999999999 778889999999999999999
Q ss_pred CCCC--eeEEEe----------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925 82 ETGA--QLFTFN----------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (305)
Q Consensus 82 ~~~~--~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (305)
+++. .+.+++ ....+.+++.++.+..++.++. ...+.+|+.. ..+.+..+++|...|
T Consensus 148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt-----ek~lr~wDpr------t~~kimkLrGHTdNV 216 (735)
T KOG0308|consen 148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT-----EKDLRLWDPR------TCKKIMKLRGHTDNV 216 (735)
T ss_pred cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc-----ccceEEeccc------cccceeeeeccccce
Confidence 9872 333222 4457888999999877777764 5566677664 346678889999999
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEE
Q 021925 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKT 228 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~ 228 (305)
..+..++||+.+++++.||+|++||+...+++.++. .|...|+++..+|+=..+++|+.||.|..-|+++. +....
T Consensus 217 r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 217 RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred EEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 999999999999999999999999999999999987 78999999999999999999999999999999984 55566
Q ss_pred EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925 229 YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 229 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
++.+.+|..+..+...+-+-+++.++. ++.|......
T Consensus 294 ck~daPv~~l~~~~~~~~~WvtTtds~-----I~rW~~~~~~ 330 (735)
T KOG0308|consen 294 CKEDAPVLKLHLHEHDNSVWVTTTDSS-----IKRWKLEPDI 330 (735)
T ss_pred ecCCCchhhhhhccccCCceeeecccc-----ceecCCcccc
Confidence 667888888888866555566666665 5666554443
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.1e-28 Score=172.66 Aligned_cols=204 Identities=20% Similarity=0.358 Sum_probs=173.2
Q ss_pred EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~ 82 (305)
.++.|+.+|.++.|++ +++.+++++-|++|++|+...++.+.++.+|...|...+|+| .++.++++|.|+++++||++
T Consensus 99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 4789999999999999 667788899999999999999999999999999999999999 67899999999999999998
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT 160 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 160 (305)
.......+. +..++.++.|+.-+..+++.++ .++.++.|++.... .++..+.+|.-.|..++|||.. ..
T Consensus 179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred CCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhH
Confidence 665444455 7779999999996665555442 47788888887543 5678889999999999999976 68
Q ss_pred EEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEc
Q 021925 161 IISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 220 (305)
|++++.|-+++|||...+. .+.+.. .|..-+..+.|++ ++..+|+++.|+.++||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhh---ccceEEeccccccccCceeeecccccceeeecc
Confidence 8899999999999998543 344444 6888999999998 5678999999999999984
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=193.54 Aligned_cols=247 Identities=17% Similarity=0.172 Sum_probs=200.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC---CCcEEEEEeCCCcEEEEecCCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+.+-.+++++.+|+|++||+|..-|+++||++.+.+....+++|..+|.|+.++. ..++|++++.|+-|.|+|+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 3456799999999999999999999999999999999999999999999999986 3478999999999999998654
Q ss_pred -CeeEEEe-eCCCceEEEEecCC--ceEEEe-CCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 85 -AQLFTFN-FDSPARSVDFAVGD--KLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 85 -~~~~~~~-~~~~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
..+.++. |...|+++.|...+ ..++.+ .+..+.+...-+...-. ..+...-...+..+..++..|..+
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~-------~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR-------LFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce-------eccccccccccceEEEeeeCCCcc
Confidence 3445555 78899999999876 334433 33322222111000000 000111122345688999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
++++++.|..|+|||+.++++.+.++...+|++....+...|.|.+|++.+.|.++.++|..+++++.+.. |...|+.+
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 99999999999999999999999999888898999999999999999999999999999999999998877 88999999
Q ss_pred EecCCCCcEEEeeCCcEEEEEEe
Q 021925 239 TMSPLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~ 261 (305)
.|.+|-++|++.++|+.+++|-+
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred eecccchhheeecCCceEEEEEC
Confidence 99999999999999999444433
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.6e-27 Score=181.42 Aligned_cols=247 Identities=22% Similarity=0.287 Sum_probs=205.2
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee----EE-------------e-cCCCcceEEEEEcCCCc
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL----GT-------------Y-RGHNGAVWCCDVSRDSM 65 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~----~~-------------~-~~~~~~v~~i~~~~~~~ 65 (305)
+.+..|.-+|.+++++|+.++.++++.+|+|.-|++.+++.. .+ - ++|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456789999999999999999999999999999998877532 11 1 26888999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec
Q 021925 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (305)
Q Consensus 66 ~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (305)
+|++|+.|..|.||+.++.+.+..+. +.+.|.+++|-.+...+++++. +..+.+|.+.. ...+..+.+
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-----Drsvkvw~~~~------~s~vetlyG 284 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-----DRSVKVWSIDQ------LSYVETLYG 284 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-----CCceEEEehhH------hHHHHHHhC
Confidence 99999999999999999999999977 8899999999998777776654 56677777643 345667889
Q ss_pred cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
|++.|.++.....++.+-+|+.|+++++|++.....+ .+. ++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+
T Consensus 285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr---g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR---GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred CccceeeechhcccceEEeccccceeEEEecccccee-eee---CCCCCeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence 9999999999988888888889999999999544333 233 67889999999755 468999999999999999999
Q ss_pred EEEEEe--e---CC--------CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 225 LIKTYV--T---ER--------PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 225 ~~~~~~--~---~~--------~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
++.+.. | +. .|++++..|..+++++|+.+|. +++|......+
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-----vrLW~i~~g~r 414 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-----VRLWKIEDGLR 414 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-----eEEEEecCCcc
Confidence 988775 2 11 6889999999999999999998 77776655533
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-26 Score=169.84 Aligned_cols=220 Identities=19% Similarity=0.287 Sum_probs=178.0
Q ss_pred EecccccceEEEEEcCCCC--EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+..|.+.|+++.|.++-. .|++|+.||.|.+|+...-+.+.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 3567999999999999765 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+|+.-...+.......+.|+|.|..+++..... +.++.+.... ....+ .....+.++.|. ++..|+
T Consensus 158 ~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~------i~i~q~d~A~------v~~~i-~~~~r~l~~~~l-~~~~L~ 223 (362)
T KOG0294|consen 158 RGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK------IDIYQLDNAS------VFREI-ENPKRILCATFL-DGSELL 223 (362)
T ss_pred cCccceeeccCCcceeeEEcCCCCEEEEEeccE------EEEEecccHh------Hhhhh-hccccceeeeec-CCceEE
Confidence 999888888888888899999999887776433 3333332111 01111 111345556554 456899
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE--cCCCCEEEEEeCCCeEEEEEcCCc-----eEEEEEeeCCCe
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL-----ELIKTYVTERPV 235 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~v 235 (305)
+|..|+.|.+||.....+...+. +|...|..+.+ .|++.+|+++|+||.|++||++.. +++..+..+.++
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~Rl 300 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFL---AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRL 300 (362)
T ss_pred EecCCceEEEeccCCCccceeee---cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCcc
Confidence 99999999999999888877776 89999999984 457889999999999999999865 566666677777
Q ss_pred eEEEec
Q 021925 236 NAVTMS 241 (305)
Q Consensus 236 ~~~~~~ 241 (305)
+|+...
T Consensus 301 tCl~~~ 306 (362)
T KOG0294|consen 301 TCLRVK 306 (362)
T ss_pred ceeeeh
Confidence 777653
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=192.47 Aligned_cols=241 Identities=25% Similarity=0.400 Sum_probs=202.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE-ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
|...+.+..|+ ..++++++.|.+|++|+..++..+.. +.+|.+.|.++++...+.+|++|+.|.++++||..++++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888888 45899999999999999999998888 9999999999999876789999999999999999999999
Q ss_pred EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 88 FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 88 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
..+. +...+.++...+. .++.+ ..+..+.+|++. .+..+..+.+|.++|.++..+ +.++++|+.
T Consensus 285 ~~l~gh~stv~~~~~~~~--~~~sg-----s~D~tVkVW~v~------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPF--LLVSG-----SRDNTVKVWDVT------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred EEecCCCceEEEEEccCc--eEeec-----cCCceEEEEecc------CcceEEEeccccccEEEEEec--CCEEEEEec
Confidence 9998 7777777655432 33332 236778888885 457788888899999999998 889999999
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeEEEecCCC
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLL 244 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~ 244 (305)
||+|++||+.++++++.+. +|...|.++.+.+. ..+++|+.|++|++||++++ +++.++. |.+-+. .+...+
T Consensus 350 d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~--~l~~~~ 423 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS--SLLLRD 423 (537)
T ss_pred CceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc--cccccc
Confidence 9999999999999999998 89999999988765 78999999999999999999 8999988 444453 445567
Q ss_pred CcEEEeeCCcEEEEEEeehhhhhhhhhhhhccc
Q 021925 245 DHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYC 277 (305)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (305)
+.|++++.|+. +++|+.........+.+
T Consensus 424 ~~Lvs~~aD~~-----Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 424 NFLVSSSADGT-----IKLWDAEEGECLRTLEG 451 (537)
T ss_pred ceeEecccccc-----EEEeecccCceeeeecc
Confidence 78999999986 88887766655554444
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.3e-28 Score=197.13 Aligned_cols=229 Identities=19% Similarity=0.309 Sum_probs=184.7
Q ss_pred eEEEEEcC-CCCEEEEeeCCCceEEEEcCC---CeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCee
Q 021925 13 LTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 13 v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
+..++|+. +.++|||++..|.|.+||+.. .+.+..+..|+..+.+++|++ ...+|++||.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 55677875 567999999999999999986 566678889999999999998 5578999999999999999988887
Q ss_pred EEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 88 FTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 88 ~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
.++. ....++.++|+|.. ..++++.+ .+.+..|+++.. ..+...+..|.++|.++.|+|++.+||+|+
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~d-----sG~lqlWDlRqp-----~r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHD-----SGYLQLWDLRQP-----DRCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecC-----CceEEEeeccCc-----hhHHHHhhcccCceEEEeecCCCceeeecC
Confidence 7776 67789999999954 45555554 566778888743 356677889999999999999999999999
Q ss_pred CCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCE-EEEEeC--CCeEEEEEcCCc-eEEEEEe-eCCCeeEE
Q 021925 166 EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSH-FLTGSL--DKSAKLWDARTL-ELIKTYV-TERPVNAV 238 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--dg~i~iwd~~~~-~~~~~~~-~~~~v~~~ 238 (305)
.|++|+|||+.+.+. ..++. ...+|.++.|-|...+ |++++. |-.|+|||++.. -+..++. |...++.+
T Consensus 240 RDK~vkiWd~t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred CCccEEEEeccCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 999999999986543 33443 5678999999997665 666654 788999999865 4555666 78888999
Q ss_pred EecC-CCCcEEEeeCCcE
Q 021925 239 TMSP-LLDHVCIGEPQTI 255 (305)
Q Consensus 239 ~~~~-~~~~l~~~~~~~~ 255 (305)
+|.. |...+.+++.|+.
T Consensus 316 ~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGT 333 (839)
T ss_pred eccCCCceeeEeecCccH
Confidence 9976 4445777888876
No 100
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.3e-28 Score=199.73 Aligned_cols=237 Identities=23% Similarity=0.343 Sum_probs=210.8
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
+-.|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|+.|+.+|+|++||+++++
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 34688889999887788999999999999999988777778899999999999999999999999999999999999999
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.+.++. +...+.++.|+|-+.+.+.++. +....+|++.. ..+.+.+.+|...+..+.|+|+|++++.|
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gSt-----dtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGST-----DTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccc-----cccceehhhhc------cCceeeecCCcceeEEEeecCCCceeecc
Confidence 888776 7888999999999999966554 66677777753 35778888999999999999999999999
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCC
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL 243 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 243 (305)
++|..+++||+..|+....+. .|.+.+.++.|+|..-++++|+.|+++++||+++.+.+.... ....|.+.+|+|+
T Consensus 173 ~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred CCcceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence 999999999999999999887 799999999999999899999999999999999998888776 5678999999999
Q ss_pred CCcEEEeeCCcEE
Q 021925 244 LDHVCIGEPQTIK 256 (305)
Q Consensus 244 ~~~l~~~~~~~~~ 256 (305)
+..+++|......
T Consensus 250 ~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 250 GKIVLSGEQISLS 262 (825)
T ss_pred ceeeecCchhhhh
Confidence 9998888766543
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.4e-28 Score=183.81 Aligned_cols=248 Identities=23% Similarity=0.323 Sum_probs=203.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+.++|.++++.+++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 467899999999999998899999999999999987665 677888888999999999999999999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
+.+...++. |...+.++.|......++.++. +..++.|++... .+... .-..+.+..+..+ ...+
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~-----DRtiK~WDl~k~------~C~kt-~l~~S~cnDI~~~--~~~~ 315 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA-----DRTIKLWDLQKA------YCSKT-VLPGSQCNDIVCS--ISDV 315 (459)
T ss_pred chhhhhhhcccccceeeehhhccccceeeccc-----cchhhhhhhhhh------heecc-ccccccccceEec--ceee
Confidence 999888887 8899999999888776555543 455566666432 11111 1123344555555 4457
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eCCCee
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----TERPVN 236 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~ 236 (305)
++|..|++|++||+++..+....+ ..+.|+++..++++..|++++.|.++.+.|+++.+....+. .....+
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred eecccccceEEEeccCCceeeEee----cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 889999999999999999998886 45699999999999999999999999999999998888776 345688
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhc
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNL 275 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
.+.|||++.|+++|+.++. +++|+.........+
T Consensus 392 rvvfSpd~~YvaAGS~dgs-----v~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGS-----VYIWSVFTGKLEKVL 425 (459)
T ss_pred eeEECCCCceeeeccCCCc-----EEEEEccCceEEEEe
Confidence 9999999999999999998 778877666655443
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.5e-25 Score=182.65 Aligned_cols=241 Identities=19% Similarity=0.276 Sum_probs=185.3
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~ 83 (305)
+++++...|+++.=+|--..+|.|..+|+|.|+++..++.+.+++...+.|++++|..||+ .+++|+..|.+.+||++.
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 5788999999999999888999999999999999999999999994459999999999886 567777789999999984
Q ss_pred CCeeEEEe--e----------------------------------------------CC---------------------
Q 021925 84 GAQLFTFN--F----------------------------------------------DS--------------------- 94 (305)
Q Consensus 84 ~~~~~~~~--~----------------------------------------------~~--------------------- 94 (305)
.+...... + ..
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence 33222221 1 11
Q ss_pred --------------------------------------------------------------------------------
Q 021925 95 -------------------------------------------------------------------------------- 94 (305)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (305)
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence
Q ss_pred -------------CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---eccCCCeeEEEEcCCC
Q 021925 95 -------------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQGRINRAVWGPLN 158 (305)
Q Consensus 95 -------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 158 (305)
.+.+++.++.|++.+++.. .+.+...++ +.+-....+ ..|+++|+.++...-+
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S-----~G~Id~fNm------QSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYS-----KGTIDRFNM------QSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceEEEecc-----CCeEEEEEc------ccCeeecccccCccccCceeEEEecCCC
Confidence 1222222222322222221 122222222 122222333 4789999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeecc--------------------------------------ccCCccceEEEEEc
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDK--------------------------------------ETGHKKTITSLAKA 200 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------~~~~~~~v~~~~~~ 200 (305)
+.+++++.+|.+++||..+...+..+.. ..+|...|++++||
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 9999999999999999987664433221 34799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 201 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
|||++|++++.|++|++||+.++.++-.+..+.+..++.|+|+|.+||++..+..-
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCce
Confidence 99999999999999999999999999999999999999999999999999877554
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-26 Score=184.68 Aligned_cols=219 Identities=20% Similarity=0.286 Sum_probs=180.2
Q ss_pred EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--eC
Q 021925 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FD 93 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~ 93 (305)
+.|+. .+.||.|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+. +.
T Consensus 183 ldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 56773 44666654 5589999999888666666568899999999999999999999999999999888887777 47
Q ss_pred CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEE
Q 021925 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173 (305)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 173 (305)
..|.+++|. +..+..+.. ...+..+++..... ....+.+|...|..++|+++++++|+|+.|+.+.||
T Consensus 261 ~rvg~laW~--~~~lssGsr-----~~~I~~~dvR~~~~-----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSR-----DGKILNHDVRISQH-----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIW 328 (484)
T ss_pred ceeEEEecc--CceEEEecC-----CCcEEEEEEecchh-----hhhhhhcccceeeeeEECCCCCeeccCCCccceEec
Confidence 788889988 555555544 34444455543221 122378999999999999999999999999999999
Q ss_pred eCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEe--CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEe
Q 021925 174 DTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 250 (305)
|.....+...+. .|...|.+++|+| ....||+|+ .|+.|++||..+++.+..+...+.|.++.|++..+-|+++
T Consensus 329 d~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 329 DGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLST 405 (484)
T ss_pred cCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEe
Confidence 998878887777 7999999999999 556788865 5999999999999999999999999999999999877776
Q ss_pred e
Q 021925 251 E 251 (305)
Q Consensus 251 ~ 251 (305)
.
T Consensus 406 h 406 (484)
T KOG0305|consen 406 H 406 (484)
T ss_pred c
Confidence 3
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.3e-25 Score=156.22 Aligned_cols=241 Identities=13% Similarity=0.120 Sum_probs=184.2
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--e---eeEEecCCCcceEEEEEcC----CCcEEEEEeC-CCc
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--E---RLGTYRGHNGAVWCCDVSR----DSMTLITGSA-DQT 75 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~---~~~~~~~~~~~v~~i~~~~----~~~~l~s~~~-dg~ 75 (305)
-+.|++.|.|.+|+|+|++||+|+.|++|++--.... + .-..+.-|.+.|..++|.. .+..|++++. |..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 3568999999999999999999999999999755432 1 2235677999999999965 3457777665 788
Q ss_pred EEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-ccCCCeeEEE
Q 021925 76 AKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAV 153 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~ 153 (305)
|.+-|..+++..+.+. +.+.+..+ ++-++-+++.++. +..++.|++..............-. -..+.|.+++
T Consensus 165 iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsq-----dktirfwdlrv~~~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQ-----DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCC-----CceEEEEeeeccceeeeccCcccCCCcccceeEEEE
Confidence 8888999998888777 45555443 4556667777665 6677788876543211110000000 1235789999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEE-E
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIK-T 228 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~-~ 228 (305)
..|.|++|++|-.|....+||++.++.++.+. .|...|.++.|+|...++++++.|..|++-|+..- -++. .
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 99999999999999999999999999999998 79999999999999999999999999999998732 1111 2
Q ss_pred EeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 229 YVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 229 ~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
-+|...+-.+.|+|..-.+++.+.|..
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcce
Confidence 237788888999999888888888876
No 105
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.8e-25 Score=162.89 Aligned_cols=257 Identities=14% Similarity=0.186 Sum_probs=186.1
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw 79 (305)
..+|.+-|+++.|.+-|+.+|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3589999999999999999999999999999996533 35567788999999999966 57899999999999999
Q ss_pred ecCCC--C-------eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-------
Q 021925 80 NVETG--A-------QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL------- 140 (305)
Q Consensus 80 d~~~~--~-------~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 140 (305)
.=... + ...++. ....|.++.|.|. |..+++++. ++.+++++.........-....
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a-----DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA-----DGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc-----CcEEEEEecCCccccccchhhhhhhhccC
Confidence 74211 1 112222 6678999999995 444444443 3334444333222211111111
Q ss_pred EEeccCCCeeEEEEcCCC---CEEEEeeCC-----CcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCC----CCEEE
Q 021925 141 ILKGPQGRINRAVWGPLN---RTIISAGED-----AIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD----GSHFL 207 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~---~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~----~~~l~ 207 (305)
....+..+..|+.|+|.. .+||.|+.+ +.++||...... .-.......+|..+|+.++|.|+ -..||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 223466778899999854 678888876 578898775432 33334444489999999999995 34699
Q ss_pred EEeCCCeEEEEEcCCc--------------------eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 208 TGSLDKSAKLWDARTL--------------------ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 208 ~~~~dg~i~iwd~~~~--------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
+++.|| |+||.++.. +.+..+. |.++|+.+.|+-.|..|++.++||. +++|..
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-----VRLWka 317 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-----VRLWKA 317 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce-----eeehhh
Confidence 999999 999998731 2333444 8889999999999999999999998 888887
Q ss_pred hhhhhhh
Q 021925 267 FLDILFY 273 (305)
Q Consensus 267 ~~~~~~~ 273 (305)
.+.....
T Consensus 318 ny~n~~k 324 (361)
T KOG2445|consen 318 NYNNLWK 324 (361)
T ss_pred hhhhhhe
Confidence 7766553
No 106
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.9e-25 Score=163.49 Aligned_cols=249 Identities=14% Similarity=0.181 Sum_probs=195.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
...+.|+++.|+|.++.|++++.||++++||....+....++ |..++.+++|.+ ...+++|+.||.|+.+|+.+++..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 347789999999999999999999999999999887766666 999999999997 457899999999999999999988
Q ss_pred EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
..-.+..+++++.+.+....+++++ ++..+..|+...... ...+ .....|.++..+ ++.|+.|+.|
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgs-----WD~~ik~wD~R~~~~------~~~~-d~~kkVy~~~v~--g~~LvVg~~~ 154 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGS-----WDKTIKFWDPRNKVV------VGTF-DQGKKVYCMDVS--GNRLVVGTSD 154 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcc-----cCccEEEEecccccc------cccc-ccCceEEEEecc--CCEEEEeecC
Confidence 8888999999999998666666553 466777787763211 1111 122367776655 7789999999
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----eEEEEEe-e---------CC
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYV-T---------ER 233 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-~---------~~ 233 (305)
..+.+||+++.....+.. .......++++++-|++.-.++++-||+|.+=.++.. +....|+ | --
T Consensus 155 r~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 999999999876554332 1245678999999998888999999999988776654 2223333 2 12
Q ss_pred CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhcccc
Q 021925 234 PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCS 278 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (305)
||++++|+|-...+++|++||. +..|+.....++.+++-.
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~-----V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGI-----VNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred EeceeEeccccceEEecCCCce-----EEEccCcchhhhhhccCC
Confidence 7999999999999999999998 777877777766655544
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=173.54 Aligned_cols=206 Identities=19% Similarity=0.254 Sum_probs=174.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
.++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+++.|+.||.+|+|||.||.|.+|++..- +
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l--v-- 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL--V-- 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee--c--
Confidence 467999999999999999989999999999999999999999999999999999999999999999999987421 0
Q ss_pred EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC--CEEEEeeCC
Q 021925 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGED 167 (305)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d 167 (305)
+++ .....++...+..|.-+|+++...+.| .++++++.|
T Consensus 157 ------------~a~---------------------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 157 ------------SAD---------------------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED 197 (476)
T ss_pred ------------ccc---------------------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence 000 011346788889999999999988764 689999999
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce----------------EEEEEe-
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----------------LIKTYV- 230 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~- 230 (305)
.++++||+..+..+.++. ....+.+++.+|-++.+++|+.+|.|.+.++.... .+..+.
T Consensus 198 ~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred ceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 999999999999998885 67889999999999999999999999998875322 223333
Q ss_pred eCC--CeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 231 TER--PVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 231 ~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
|.. +|+|++.+-||..|++|+.|+...+|.++
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 444 89999999999999999999985544444
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-26 Score=167.51 Aligned_cols=242 Identities=19% Similarity=0.299 Sum_probs=199.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEc------CC----------------------------------Cee
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA------DN----------------------------------GER 44 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~------~~----------------------------------~~~ 44 (305)
...||.+.|++++|++.+.++++++.|++..||.. .. ..+
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 47899999999999999999999999999999951 10 013
Q ss_pred eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (305)
Q Consensus 45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
+..+.+|.+.|.+..|...|+.+++++.|.+-.+||+++++.+..+. +......++-+|..++++.++. +....
T Consensus 265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-----DtTFR 339 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-----DTTFR 339 (481)
T ss_pred eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-----CceeE
Confidence 45678999999999999999999999999999999999999999887 8888889999999999988876 56677
Q ss_pred EEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCC
Q 021925 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD 202 (305)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 202 (305)
+|+... ....+..+++|...|+++.|.-+. .+++|+.|.+|++||+++. .++.++. ...+++.++.+..
T Consensus 340 LWDFRe-----aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g 409 (481)
T KOG0300|consen 340 LWDFRE-----AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKG 409 (481)
T ss_pred eccchh-----hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecC
Confidence 777763 346788899999999999998765 4899999999999999874 4667775 6788999999998
Q ss_pred CCEEEEEeCCCeEEEEEcCCceEEEEE---e--eCCCeeEEEecCCCC--cEEEeeCCcEEEEEEe
Q 021925 203 GSHFLTGSLDKSAKLWDARTLELIKTY---V--TERPVNAVTMSPLLD--HVCIGEPQTIKFMLLV 261 (305)
Q Consensus 203 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~--~l~~~~~~~~~~~~~~ 261 (305)
+..++.--.+..|++||+...+..+.- + |..-|.|++|..+.. -|++++-|...+-+.+
T Consensus 410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 410 HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 889999988999999999854432221 1 566789999986554 3778887776444433
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-24 Score=175.29 Aligned_cols=244 Identities=16% Similarity=0.218 Sum_probs=194.5
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEecCC-CcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
+.--..+|.+|+++.+.+.||.+-.||.|.||++..+= +...+.++ +..|.+++|++ +..|.+.+.+|.|.-||+.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence 34456789999999999999999999999999998753 33455554 45799999995 55788999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
++....+. ..+.+.+++.+|.+..++++.++.....-.+....+ +....+...++.+.+++|+|++..++
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------TYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------EEEeecccccceEEEEEecCCccEEE
Confidence 99998888 788999999999999999987654333322221111 22233444568999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeec-----cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925 163 SAGEDAIVRIWDTETGKLLKESD-----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~ 236 (305)
+|+.||.|++||..++..+.... .......-|+++.|-.++ .|++|.+.|+|.+||...+.+++.+. |...|.
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl 249 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVL 249 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhccee
Confidence 99999999999999988776221 111234567888887665 69999999999999999999999988 899999
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEE
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
+++.++++..+++++-|+..+.+.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEE
Confidence 999999999999999888764443
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.9e-25 Score=160.28 Aligned_cols=243 Identities=18% Similarity=0.236 Sum_probs=183.3
Q ss_pred ccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCC-Ceee-EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 8 ~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
..++.|.+++||| ....+++++.||+||+|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4577899999999 555677899999999999987 3332 344569999999999999999999999999999999999
Q ss_pred CeeEEEeeCCCceEEEEecCCc--eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 85 AQLFTFNFDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+....-.|..++..+.|.+... .++++ .++..++.|+.+.. .++..+.-. ..+.++.. ...+++
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-----SWDKTlKfWD~R~~------~pv~t~~LP-eRvYa~Dv--~~pm~v 170 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTG-----SWDKTLKFWDTRSS------NPVATLQLP-ERVYAADV--LYPMAV 170 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEec-----ccccceeecccCCC------Ceeeeeecc-ceeeehhc--cCceeE
Confidence 8888778999999999999877 44444 35777888887632 333333322 23444332 246788
Q ss_pred EeeCCCcEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE--EEEe-eC------
Q 021925 163 SAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-TE------ 232 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~------ 232 (305)
.+..+..|.+|+++++.... .... ...-.+++++..+|....+.|+.+|++.+..+..+.+. .+|+ |.
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 89999999999997654332 2221 34567899999998888899999999999998876332 3333 32
Q ss_pred ---CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 233 ---RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 233 ---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
-.|++++|+|....|+++++||. ...|+.....+
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGt-----f~FWDkdar~k 285 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGT-----FSFWDKDARTK 285 (347)
T ss_pred CceEEecceEeecccceEEEecCCce-----EEEecchhhhh
Confidence 14789999999999999999998 44555444333
No 111
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.2e-27 Score=174.32 Aligned_cols=199 Identities=26% Similarity=0.436 Sum_probs=172.6
Q ss_pred CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe---------eCCCceEEEEecCCceEEEeCCcceeeee
Q 021925 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---------FDSPARSVDFAVGDKLAVITTDPFMELNS 120 (305)
Q Consensus 50 ~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
+.++.+.|..|+|||++|++|+.||.|-+||..+|+....++ ++.+|.|+.|+.+...++.++. ++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq-----DG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ-----DG 285 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc-----CC
Confidence 356678999999999999999999999999999987655443 6788999999999999999875 78
Q ss_pred eEEEEEeecccCCCCCceEEEEe-ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE
Q 021925 121 AIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (305)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 199 (305)
.+++|.+.. +.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+++|++++.+. +|.+.|+...|
T Consensus 286 kIKvWri~t------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~f 356 (508)
T KOG0275|consen 286 KIKVWRIET------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATF 356 (508)
T ss_pred cEEEEEEec------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---CccccccceEE
Confidence 889998854 45666665 899999999999999999999999999999999999999988 99999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCCC-CcEEEeeCCcEEEEEEee
Q 021925 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLL-DHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 262 (305)
.++|+.+++++.||+|++|+.++.+++.+++ .+.+|+++-.-|.+ ..+++|...+.....++.
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 9999999999999999999999999999998 45678888887765 467777777665444443
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.6e-26 Score=178.81 Aligned_cols=249 Identities=13% Similarity=0.196 Sum_probs=207.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC---eeeEEecC--CCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~v~vw 79 (305)
..-.|.+-|.++..|...++++||+ .|.|+|||+... .++..+.. -...|.++...|||+.|++|+.-.+|.||
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 3457999999999999999999987 678999998643 23444432 35679999999999999999999999999
Q ss_pred ecCCCCeeEEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 80 NVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 80 d~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
|+........... ...+..++.+||.++.+.+.. ++.+.+|++.. ...++.+++|.+.+.|+..++
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccs-----dGnI~vwDLhn------q~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS-----DGNIAVWDLHN------QTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc-----CCcEEEEEccc------ceeeecccCCCCCceeEEecC
Confidence 9987765444442 345678899999999888765 67788888854 357888999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 236 (305)
+|..|.+|+-|.+|+.||+++++.+.... ....|.++..+|++.+|+.|-.++.+.+......+......|++.|.
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVL 637 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVL 637 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEE
Confidence 99999999999999999999998877664 67889999999999999999999999999877655555555999999
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYN 274 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
++.|.+.|+++++.+.|+. +..|.......+++
T Consensus 638 SlKFa~cGkwfvStGkDnl-----LnawrtPyGasiFq 670 (705)
T KOG0639|consen 638 SLKFAYCGKWFVSTGKDNL-----LNAWRTPYGASIFQ 670 (705)
T ss_pred EEEecccCceeeecCchhh-----hhhccCccccceee
Confidence 9999999999999999987 77887776666643
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3.3e-26 Score=168.85 Aligned_cols=214 Identities=17% Similarity=0.273 Sum_probs=176.6
Q ss_pred eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC------------CC------eeEEE-eeCCCceEEEEecCC
Q 021925 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET------------GA------QLFTF-NFDSPARSVDFAVGD 105 (305)
Q Consensus 45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~------------~~------~~~~~-~~~~~v~~~~~~~~~ 105 (305)
...+..|++++.+.+|+|||.++++|+.|..|+|.|++. +. .+.++ .+-.+|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345667999999999999999999999999999999871 11 12222 378899999999999
Q ss_pred ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec
Q 021925 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 185 (305)
.+++.++. ++.+++.+..+... +...+.-....++.++.|+|.|.+|+.|..-..+++||+.+-++...-.
T Consensus 185 ~ILiS~sr-----D~tvKlFDfsK~sa----KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 185 TILISGSR-----DNTVKLFDFSKTSA----KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred heEEeccC-----CCeEEEEecccHHH----HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 99999876 56666666654322 1111222334679999999999999999999999999999988877766
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
...+|.+.|+++.+++.+++.++++.||.|++||--+++++.++. .+..|.+..|..+|+++++.+.|.. ++
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-----vk 330 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-----VK 330 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-----ee
Confidence 667899999999999999999999999999999999999999887 4567999999999999999999987 78
Q ss_pred hhhhhhhhhh
Q 021925 263 LFVLFLDILF 272 (305)
Q Consensus 263 ~~~~~~~~~~ 272 (305)
+|.+...+.+
T Consensus 331 LWEi~t~R~l 340 (430)
T KOG0640|consen 331 LWEISTGRML 340 (430)
T ss_pred eeeecCCceE
Confidence 8877665554
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=169.01 Aligned_cols=208 Identities=19% Similarity=0.309 Sum_probs=163.3
Q ss_pred CCce-EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeee---EEecCCCcceEEEEEcC-CCcEEEEEeCCC
Q 021925 1 MRPI-LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERL---GTYRGHNGAVWCCDVSR-DSMTLITGSADQ 74 (305)
Q Consensus 1 ~~~~-~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg 74 (305)
++|+ ++.+|.+.=++++|||- ...|++|.--+.|++|...++.-. ..+.+|+..|-.++|+| ....|+|||.||
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 4676 48899999999999992 235888888889999998887533 34567999999999999 446899999999
Q ss_pred cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
+|+|||++.+... .....+.|.+.|+-+.|
T Consensus 281 sIrIWDiRs~~~~--------------------------------------------------~~~~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 281 SIRIWDIRSGPKK--------------------------------------------------AAVSTKAHNSDVNVISW 310 (440)
T ss_pred eEEEEEecCCCcc--------------------------------------------------ceeEeeccCCceeeEEc
Confidence 9999999977432 12223678899999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC---CcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc-------
Q 021925 155 GPLNRTIISAGEDAIVRIWDTET---GKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL------- 223 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~------- 223 (305)
+.+..+||+|+.||+++|||+++ ++++..+. -|..+|+++.|+|. ...|++++.|.+|.+||+..-
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99888999999999999999986 45666666 79999999999994 457889999999999998531
Q ss_pred ------------eEEEEEeeCCCeeEEEecCCCC-cEEEeeCCcEEEEEEe
Q 021925 224 ------------ELIKTYVTERPVNAVTMSPLLD-HVCIGEPQTIKFMLLV 261 (305)
Q Consensus 224 ------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~ 261 (305)
+++.....+..+..+.|+++-+ ++++.+.+|..++.++
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfktI 438 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKTI 438 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEec
Confidence 1222222456788999999865 4566677777666554
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=5.4e-25 Score=178.09 Aligned_cols=233 Identities=20% Similarity=0.317 Sum_probs=192.5
Q ss_pred EecccccceEE-EEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTY-LKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~-~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|.+-|.. +++-+ ++-.+++|+.|+.+.+|...+..++.++.+|+..|.++....++. ++|||.|.++++|...
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG 130 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence 46778888777 88876 445699999999999999999999999999999999999887776 9999999999999764
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
++...+. |+..|..++.-|.+.++..+.+. .+++|.- ++.+..+.+|.+.|..+++-|++. +
T Consensus 131 --~l~~~l~gH~asVWAv~~l~e~~~vTgsaDK------tIklWk~--------~~~l~tf~gHtD~VRgL~vl~~~~-f 193 (745)
T KOG0301|consen 131 --ELVYSLQGHTASVWAVASLPENTYVTGSADK------TIKLWKG--------GTLLKTFSGHTDCVRGLAVLDDSH-F 193 (745)
T ss_pred --hhhcccCCcchheeeeeecCCCcEEeccCcc------eeeeccC--------CchhhhhccchhheeeeEEecCCC-e
Confidence 4444455 89999999999999666666543 3444432 467788999999999999998754 8
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-CeeEEEe
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTM 240 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~ 240 (305)
++++.||.|++|++ ++..+..+. +|..-+.++...+++..++++++|++++||+.. ++.+.+.++. .|+++.+
T Consensus 194 lScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred EeecCCceEEEEec-cCceeeeee---ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 89999999999999 678888777 899999999988888899999999999999976 8888888665 8999999
Q ss_pred cCCCCcEEEeeCCcEEEEEEee
Q 021925 241 SPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
-++|+ |++|++||...+++..
T Consensus 268 L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeCCC-EEEeccCceEEEEEec
Confidence 99986 5566777765554444
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.4e-23 Score=167.41 Aligned_cols=245 Identities=16% Similarity=0.122 Sum_probs=176.1
Q ss_pred ecccccceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCCcEEEEecCC
Q 021925 6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVET 83 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~v~vwd~~~ 83 (305)
+.+|. .+.+++|+|+|+.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.+++||+++
T Consensus 27 ~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 27 FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 34443 46789999999876 5667889999999999888777765544 5778999999877554 5689999999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
.+.+..+.....+..++++|++..++++..... .+..++.. ..+...... ....+..++|+|+++++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~----~~~~~d~~------~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN----MAHFIDTK------TYEIVDNVL-VDQRPRFAEFTADGKELWV 173 (300)
T ss_pred CeEEeEeeCCCCcceEEECCCCCEEEEEecCCC----eEEEEeCC------CCeEEEEEE-cCCCccEEEECCCCCEEEE
Confidence 888877776667889999999999888764311 11122221 112222222 2334577999999998865
Q ss_pred e-eCCCcEEEEeCCCCcEeeeecccc--CC--ccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceEEEEEeeCCCeeE
Q 021925 164 A-GEDAIVRIWDTETGKLLKESDKET--GH--KKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNA 237 (305)
Q Consensus 164 ~-~~dg~i~iwd~~~~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 237 (305)
+ ..++.|++||+++++.+..+.... .+ ......++|+|+++++++ .+.++.+.+||.++++.+..+.+...+.+
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 253 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQ 253 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcce
Confidence 4 468999999999988776653110 01 112356889999998554 45577899999999988877666778999
Q ss_pred EEecCCCCcEEEeeC-CcEEEEEEeehhhhhh
Q 021925 238 VTMSPLLDHVCIGEP-QTIKFMLLVYLFVLFL 268 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 268 (305)
++|+|+|++|++++. ++. +.+|+...
T Consensus 254 ~~~~~~g~~l~~~~~~~~~-----i~v~d~~~ 280 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSND-----VSVIDVAA 280 (300)
T ss_pred EEECCCCCEEEEEcCCCCe-----EEEEECCC
Confidence 999999999988754 454 55565544
No 117
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.1e-25 Score=168.43 Aligned_cols=212 Identities=19% Similarity=0.318 Sum_probs=166.1
Q ss_pred ecccccceEEEEEcCCC--CEEEEeeCCCceEEEEcCC----------------CeeeEEecCCCcceEEEEEcC-CCcE
Q 021925 6 MKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----------------GERLGTYRGHNGAVWCCDVSR-DSMT 66 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~----------------~~~~~~~~~~~~~v~~i~~~~-~~~~ 66 (305)
.-+|.+.++-+.-++-+ .+.|+-+..|.|+||++.. .+++.++.+|.+.=..++||| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888888887754 4566667889999998752 356778889999999999999 3346
Q ss_pred EEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (305)
Q Consensus 67 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
|++|..-+.|++|...++.-.. . ...+.+|.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~v---------------------------------------d----------~~Pf~gH~ 257 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKV---------------------------------------D----------QRPFTGHT 257 (440)
T ss_pred cccCccccceEeeeeccCceee---------------------------------------c----------Cccccccc
Confidence 8888888899999987653211 0 11245699
Q ss_pred CCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC---
Q 021925 147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART--- 222 (305)
Q Consensus 147 ~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--- 222 (305)
..|..++|||.. ..|++|+-||.|+|||+|.+.....+.. ..|.+.|+.+.|+.+..+||+|+.||+++|||++.
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS 336 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence 999999999976 5788999999999999998843333322 37999999999999888999999999999999985
Q ss_pred ceEEEEEe-eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 223 LELIKTYV-TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 223 ~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
++++.+|. |..+|+++.|+|.... +++++.|+. +.+|++..+.-.
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-----itiWDlsvE~D~ 383 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-----ITIWDLSVEADE 383 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccCceEEeccCCCc-----EEEEEeeccCCh
Confidence 57888888 9999999999997665 455555655 788888776654
No 118
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=160.13 Aligned_cols=229 Identities=18% Similarity=0.245 Sum_probs=180.5
Q ss_pred EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCC-ceEEEeCCcceeeeee
Q 021925 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGD-KLAVITTDPFMELNSA 121 (305)
Q Consensus 46 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~ 121 (305)
+.+++|...+.+++|+.+|..|++|+.|+++.+|+++..+...... +.+.+..++|.|.. ..+++++. ...
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~-----dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG-----DKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC-----Cce
Confidence 4566899999999999999999999999999999998776555544 66678888998854 44455443 456
Q ss_pred EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec----------------
Q 021925 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD---------------- 185 (305)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------- 185 (305)
+.+|++.. +++........+.+ -+.|+|+|++++.++.|..|.+.|.++.+.....+
T Consensus 89 ir~wd~r~------~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 89 IRIWDIRS------GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL 161 (313)
T ss_pred EEEEEecc------CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence 67777753 35555555544444 37899999999999999999999888655433211
Q ss_pred ----------------------cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925 186 ----------------------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 186 ----------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 242 (305)
....|.....|+.|+|+|++||+|+.|..+.+||+...-+++.+. ++-||..++|+.
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence 123688888899999999999999999999999999999999887 889999999999
Q ss_pred CCCcEEEeeCCcEEEEEEee----hhhhhhhhhhhhcccccccccccc
Q 021925 243 LLDHVCIGEPQTIKFMLLVY----LFVLFLDILFYNLYCSASRKYIYD 286 (305)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
+|++||+|+.|..+....+. +|.+..+...+.....+.+..+.|
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAy 289 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAY 289 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeE
Confidence 99999999999886655554 577777777777777777777776
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.7e-25 Score=171.47 Aligned_cols=209 Identities=16% Similarity=0.279 Sum_probs=168.9
Q ss_pred eEecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCe-------eeEEecCCCcceEEEEEcC-CCcEEEEEeCCC
Q 021925 4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQ 74 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~-------~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg 74 (305)
++|.||.+.=++++|++.. -.|++++.|+.|.+||+.... +...+.+|.+.|..++|++ +..++++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 4689999988999999944 488999999999999987432 4567789999999999999 567899999999
Q ss_pred cEEEEecCC--CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 75 TAKLWNVET--GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 75 ~v~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
.+.|||+++ .++..... +...+.|++|+|-+..+++.+. .+..+.+|+++... ++...+.+|...|.+
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S----~D~tV~LwDlRnL~-----~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS----ADKTVALWDLRNLN-----KPLHTFEGHEDEVFQ 321 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc----CCCcEEEeechhcc-----cCceeccCCCcceEE
Confidence 999999994 44444444 8999999999996655544432 36778888887543 488899999999999
Q ss_pred EEEcCCC-CEEEEeeCCCcEEEEeCCCCcEe-----------eeeccccCCccceEEEEEcCCCCE-EEEEeCCCeEEEE
Q 021925 152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLL-----------KESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLW 218 (305)
Q Consensus 152 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw 218 (305)
+.|+|.. ..||+++.|+.+.+||+..-... ..+....+|...|..+.|+|+..+ +++.+.|+.+.||
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence 9999986 57888899999999999752211 122334589999999999998776 6788999999999
Q ss_pred EcC
Q 021925 219 DAR 221 (305)
Q Consensus 219 d~~ 221 (305)
+..
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 976
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.7e-24 Score=159.46 Aligned_cols=233 Identities=15% Similarity=0.171 Sum_probs=177.7
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
.|..++.+++|.++ ..+++|+.||.|+.+|+.++... .+..|..+|.||..++....+++||.|++|++||.+.....
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 58999999999974 57899999999999999887754 45569999999999997789999999999999999986666
Q ss_pred EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
..+.....|.++... +..+++++. ...+.+++++...... ...-..-+-.+.+++.-|++.-.+.++.|
T Consensus 130 ~~~d~~kkVy~~~v~--g~~LvVg~~-----~r~v~iyDLRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 130 GTFDQGKKVYCMDVS--GNRLVVGTS-----DRKVLIYDLRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred cccccCceEEEEecc--CCEEEEeec-----CceEEEEEcccccchh----hhccccceeEEEEEEEecCCCceEEEeec
Confidence 666666677776554 444444333 3455566665433221 11112234567899999988889999999
Q ss_pred CcEEEEeCCCCc----Eeeeec------cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925 168 AIVRIWDTETGK----LLKESD------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (305)
Q Consensus 168 g~i~iwd~~~~~----~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~ 236 (305)
|.|.+=.+...+ ....+. .....-.+|++++|+|-...|+||+.||.|.+||+.+.+.+.++. .+..|.
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS 278 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence 999886665441 111122 111123589999999998899999999999999999999988887 556799
Q ss_pred EEEecCCCCcEEEeeCC
Q 021925 237 AVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~ 253 (305)
+++|+.+|..||+|++-
T Consensus 279 slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 279 SLSFSMDGSLLAIASSY 295 (323)
T ss_pred EEEeccCCCeEEEEech
Confidence 99999999999999743
No 121
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-23 Score=154.55 Aligned_cols=213 Identities=21% Similarity=0.233 Sum_probs=168.9
Q ss_pred CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeee
Q 021925 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNS 120 (305)
Q Consensus 42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
.++.+.+....+.|.++.|+++|.++++++.|..+++||..+++.+.++. .+..+..+.|......+..++. ..+.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---k~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---KEDD 80 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---CCCC
Confidence 34556666678899999999999999999999999999999999999998 4557778888877776666654 2344
Q ss_pred eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc--------------
Q 021925 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-------------- 186 (305)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------- 186 (305)
.++...+. ..+.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+..
T Consensus 81 tIryLsl~------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 81 TIRYLSLH------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLI 154 (311)
T ss_pred ceEEEEee------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcE
Confidence 55555543 4578999999999999999999999999999999999999996554332211
Q ss_pred ----------------------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC---C-C
Q 021925 187 ----------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R-P 234 (305)
Q Consensus 187 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~-~ 234 (305)
..+.....+.+.|+|||+.|+.++..+.+++.|.-+|....++... . -
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 1123456788999999999999999999999999999988888721 1 1
Q ss_pred eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
..+.+|+||++++++|++|+. +.+|+...
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~-----i~vw~~~t 263 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGT-----IHVWNLET 263 (311)
T ss_pred ceeEEECCCCcEEEEecCCCc-----EEEEEcCC
Confidence 257889999999999999998 55555533
No 122
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=4.8e-25 Score=170.32 Aligned_cols=242 Identities=17% Similarity=0.209 Sum_probs=182.6
Q ss_pred eEecccccceEEEEEcCCC--CEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcE
Q 021925 4 ILMKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTA 76 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v 76 (305)
-+.+-|.++|++++|+|.. +.+|+|..-|.|-+||+.+. ..+..+..|..+|.++.|+| +...+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3566789999999999954 58889999999999999532 34556778999999999999 56789999999999
Q ss_pred EEEecCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925 77 KLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (305)
++-|++++.....+. .......+.++.+...++.+.+ .+...+++.... +.....+..|+..|.+++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-----~G~f~~iD~R~~-----~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-----VGNFNVIDLRTD-----GSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-----ccceEEEEeecC-----Cccchhhhhhhcccceee
Confidence 999998764322222 3345566777777777776654 344555555532 233445667888999999
Q ss_pred EcCCC-CEEEEeeCCCcEEEEeCCCCcEeee-eccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc----CCceEEE
Q 021925 154 WGPLN-RTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA----RTLELIK 227 (305)
Q Consensus 154 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~~ 227 (305)
++|.. .+|++++.|++.+|||++.-..... +-....|...|.+..|||.+-.|+|.+.|.+|+|||. ..-.+..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 99977 5788999999999999986433332 1122269999999999998888999999999999998 4455666
Q ss_pred EEeeCCC------eeEEEecCCCCcEEEeeCCcE
Q 021925 228 TYVTERP------VNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 228 ~~~~~~~------v~~~~~~~~~~~l~~~~~~~~ 255 (305)
++.|... .-...|.|+..++++|--...
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcc
Confidence 6665432 345689999999999865554
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=166.44 Aligned_cols=240 Identities=15% Similarity=0.194 Sum_probs=185.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCe
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~ 86 (305)
.+.|+++.|+|....+++|+.||+++||.++. +..++.+.--..+|.+.+|.|+|. .+++++....++.||+++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46799999999999999999999999997753 445666666678999999999998 889999999999999998875
Q ss_pred eEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 87 LFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 87 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
...-. ....+..+.+++++.+++..+. .+.+.+.... ..+.+..+ .-.+.+..++|+.+++.|+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----~G~I~lLhak------T~eli~s~-KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----NGHIHLLHAK------TKELITSF-KIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEccc-----CceEEeehhh------hhhhhhee-eeccEEeeEEEecCCcEEE
Confidence 54333 2345678889999999988875 2333322221 11222222 2356789999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC------ceEEEEEe-eCCCe
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART------LELIKTYV-TERPV 235 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-~~~~v 235 (305)
+++.+|.|.+||++...+++.+... ..-.-++++.++++.+||+|+..|.|.|||.++ .++++.+. ....|
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 9999999999999999998888632 122346677889999999999999999999653 35666665 56779
Q ss_pred eEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 236 NAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
++++|+|+.+.|+.++......+-.+.+
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEec
Confidence 9999999999999998665544444443
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.7e-23 Score=163.95 Aligned_cols=230 Identities=17% Similarity=0.291 Sum_probs=178.8
Q ss_pred eccc-ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 6 MKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 6 l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
++++ ++-|.|++|.++|. ++||.++|.|.||+..+.+..+...+|.+.|.+++...+|. |++|+.|+.|..|| ..-
T Consensus 241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y 317 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNY 317 (626)
T ss_pred cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccc
Confidence 3444 35699999999985 77899999999999988888887779999999999999985 56699999999999 333
Q ss_pred CeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 85 AQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 85 ~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
+.+...+ ..++++.++-...+ +++++.....+.+.+ .........+|......++.+|+.+.+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~------------~~~f~~~v~gh~delwgla~hps~~q~ 383 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTL------------ENGFTLTVQGHGDELWGLATHPSKNQL 383 (626)
T ss_pred cccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeee------------cCCceEEEEecccceeeEEcCCChhhe
Confidence 4444444 33455555544333 444444333332221 123345567888899999999999999
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEec
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 241 (305)
++++.|+.+++|+ ..++..... -..+..++.|+|.| .+|.|+..|...+.|.++...+..-...+++++++|+
T Consensus 384 ~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys 456 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYS 456 (626)
T ss_pred eeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEc
Confidence 9999999999999 445555543 46788999999999 9999999999999999997777665578899999999
Q ss_pred CCCCcEEEeeCCcEEEEE
Q 021925 242 PLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~ 259 (305)
|+|.+||+|+.|+.+..+
T Consensus 457 p~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred CCCCEEEEecCCCeEEEE
Confidence 999999999999984333
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=5.3e-24 Score=169.90 Aligned_cols=248 Identities=17% Similarity=0.241 Sum_probs=193.5
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc--EEEEEeCCCcEEEEec
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNV 81 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~v~vwd~ 81 (305)
.++.||++.|.++...|.|.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.+. .||++-. +++.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCc
Confidence 3689999999999999999999999999999999999999999887 567899999999654 3444433 33444332
Q ss_pred CCC--------------------------------------CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925 82 ETG--------------------------------------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (305)
Q Consensus 82 ~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
.-| .....+.+...+..+.|+..|.++++...... ...+.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~--~~~Vl 549 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG--NKSVL 549 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC--cceEE
Confidence 100 11234557889999999999999998764221 23344
Q ss_pred EEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (305)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 203 (305)
+.++.+. .....+....+.+.++.|+|...+|+.++. ..|+|||+..+..++.+. .....|..++.+|.|
T Consensus 550 iHQLSK~------~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 550 IHQLSKR------KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPNG 619 (733)
T ss_pred EEecccc------cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecCCC
Confidence 4444332 122334556778999999999999998876 679999999888887776 567889999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 204 SHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 204 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
..|+.|+.|+.+..+|+.-. ++.+++. |...+++++|++.-.++++|+.|+..++.--.+++
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 99999999999999999854 6667776 88899999999999999999998887665555443
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=175.11 Aligned_cols=256 Identities=14% Similarity=0.168 Sum_probs=182.6
Q ss_pred eEecccccceEEEEEcCCCCEEEEee--CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC--CCcEEEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLW 79 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~v~vw 79 (305)
.++..|+.++++++|+++|+++|+|- ....+++|++.....+..+..|+..|+|++|+|.++++++.+. |-.|.+|
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 35667889999999999999999974 5678999999998899999999999999999999999998776 5567888
Q ss_pred ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee------------------------------------------
Q 021925 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME------------------------------------------ 117 (305)
Q Consensus 80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 117 (305)
|.+.+-....-+....|..++|+.++.+++++.+..+.
T Consensus 152 dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 152 DWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 88766665555666777777777777776665541000
Q ss_pred --------------------------------------------------------------------------------
Q 021925 118 -------------------------------------------------------------------------------- 117 (305)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (305)
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q 311 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQ 311 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccc
Confidence
Q ss_pred --------------------------------eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC--------
Q 021925 118 --------------------------------LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-------- 157 (305)
Q Consensus 118 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 157 (305)
.+..+.+|++.... .......+-.|...|+.+.--|-
T Consensus 312 ~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~---kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~a 388 (1080)
T KOG1408|consen 312 PEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVN---KVGKCSSMLYHSACIWDVENLPCNVHSPTAA 388 (1080)
T ss_pred ccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccc---cccceeeeeeccceeeeeccccccccCcccc
Confidence 01111222221110 01111223345555555544441
Q ss_pred ---CCEEEEeeCCCcEEEEeCCCCcEeeeecc----------------------------------ccCCccceEEEEEc
Q 021925 158 ---NRTIISAGEDAIVRIWDTETGKLLKESDK----------------------------------ETGHKKTITSLAKA 200 (305)
Q Consensus 158 ---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~ 200 (305)
..-+.+++.|++|++||+..+..-..+.. .-+....+.+++.+
T Consensus 389 clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS 468 (1080)
T KOG1408|consen 389 CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS 468 (1080)
T ss_pred cCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC
Confidence 12488999999999999986221111000 01234578999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC---CCCcEEEeeCCcEEEEEEee
Q 021925 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP---LLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 201 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~~~~ 262 (305)
|+|++||+|..-|++++||+...+.+..+. |++.|.|+.++. ..++|++|+.|..+.++.+.
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 999999999999999999999888877777 999999999984 34678899999986555544
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.1e-24 Score=173.04 Aligned_cols=234 Identities=23% Similarity=0.344 Sum_probs=193.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEE-EEEcC-CCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWC-CDVSR-DSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~-i~~~~-~~~~l~s~~~dg~v~vwd 80 (305)
.+.||+..|..++..+.. .++++|.||++++|+-..++.+ ..+.+|.+-|.. +++.+ ++..+++|+.|+++.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 578999999999887654 8999999999999997655544 346678887777 88875 555799999999999999
Q ss_pred cCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 81 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
..+..+...+. |+..|.++....++.++..+ ++....+|... +....+.+|+..|++++.-|.+
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgS------WD~TakvW~~~--------~l~~~l~gH~asVWAv~~l~e~- 152 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGTLISGS------WDSTAKVWRIG--------ELVYSLQGHTASVWAVASLPEN- 152 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCceEecc------cccceEEecch--------hhhcccCCcchheeeeeecCCC-
Confidence 99999998887 89999999988888844333 35566666653 4455589999999999999988
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
.++||+.|..|++|.- ++.++++. +|...|+.+++-+++ .+++++.||.|++|++ +++.+.+.. |..-+.++
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSI 225 (745)
T ss_pred cEEeccCcceeeeccC--Cchhhhhc---cchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEE
Confidence 7899999999999985 67788887 899999999999875 4789999999999999 577666665 88999999
Q ss_pred EecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 239 TMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
+..+++..+++++.|+. +++|..
T Consensus 226 s~~~~~~~Ivs~gEDrt-----lriW~~ 248 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRT-----LRIWKK 248 (745)
T ss_pred EecCCCCeEEEecCCce-----EEEeec
Confidence 98888899999999998 555543
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-24 Score=153.28 Aligned_cols=208 Identities=18% Similarity=0.287 Sum_probs=159.8
Q ss_pred EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v 78 (305)
.|.||.+||..++|.. -|.+||+++.||.|.||.-++++- ......|+..|++++|.|. |-.|++++.||.|.|
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 5899999999999965 899999999999999999877743 3445679999999999994 568899999999999
Q ss_pred EecCCCC--eeEE--EeeCCCceEEEEecC---C-----------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925 79 WNVETGA--QLFT--FNFDSPARSVDFAVG---D-----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140 (305)
Q Consensus 79 wd~~~~~--~~~~--~~~~~~v~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (305)
.+.++.. .... ..|.-.+.+++|.|. | +.++.++ .+..+.+|..... .-....
T Consensus 131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-----cDn~VkiW~~~~~----~w~~e~ 201 (299)
T KOG1332|consen 131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-----CDNLVKIWKFDSD----SWKLER 201 (299)
T ss_pred EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC-----CccceeeeecCCc----chhhhh
Confidence 9987651 1222 227888999999986 3 2233333 2556667766543 223344
Q ss_pred EEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925 141 ILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 216 (305)
.+.+|.+-|..++|.|.- .+|+++++||++.||..+.................+..+.|++.|+.|++++.|+.|.
T Consensus 202 ~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 202 TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 589999999999999975 4899999999999998774322222222224567899999999999999999999999
Q ss_pred EEEcC
Q 021925 217 LWDAR 221 (305)
Q Consensus 217 iwd~~ 221 (305)
+|.-.
T Consensus 282 lwke~ 286 (299)
T KOG1332|consen 282 LWKEN 286 (299)
T ss_pred EEEeC
Confidence 99744
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=165.60 Aligned_cols=212 Identities=19% Similarity=0.305 Sum_probs=168.4
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC---------CCeeeEEecCCCcceEEEEEcCCC--cEEEEEeCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYRGHNGAVWCCDVSRDS--MTLITGSADQ 74 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---------~~~~~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg 74 (305)
+.+|-.+|+|+.|+.||.+|+||+.||.|.+|.+. +-+++..+..|.-+|+++...+.| .+|+|+|.|.
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 57899999999999999999999999999999764 346778899999999999998753 5899999999
Q ss_pred cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEE-----eecccCCCCCceEEEEeccCC--
Q 021925 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR-----IARDPADQGGESVLILKGPQG-- 147 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-- 147 (305)
++++||+..+..+.++..+..+.+++..|.+..+++++............+. +...........+..+.+|.+
T Consensus 199 t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred eEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 9999999999999999999999999999999999998874332222211111 011112244567788889988
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEc
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDA 220 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~ 220 (305)
.|+|++.+-||..|++|+.||.|+|||+.+.++++++. ...++|+.+.+.|-.+-... -.....+-.|++
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~---~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ---TSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh---hhccccceeEeeccccceecccccCccCCchHh
Confidence 99999999999999999999999999999999999886 36788999998664332222 223334455544
No 130
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.1e-24 Score=169.39 Aligned_cols=216 Identities=18% Similarity=0.235 Sum_probs=153.3
Q ss_pred EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe----eEEEe--eCCCceEEEEecCCceEEEeCCccee--
Q 021925 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ----LFTFN--FDSPARSVDFAVGDKLAVITTDPFME-- 117 (305)
Q Consensus 46 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~-- 117 (305)
..+++|...|.++++.|.|-.|++|+.|-+|++||+..... ...+. ....+.++.|++.+..+++.+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 45677889999999999999999999999999999875432 12222 45689999999988777766543221
Q ss_pred eeeeEEE-EEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-eeeec--cccCCcc
Q 021925 118 LNSAIHV-KRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-LKESD--KETGHKK 192 (305)
Q Consensus 118 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~~~~~ 192 (305)
++..... ....+. .+-..-...-++|...+++.+|+|.. ..+++++.||++++||+...+. .+.+. ...+..-
T Consensus 241 ~DRdG~~~~e~~KG--DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKG--DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EccCCceeeeeecc--chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 1111110 001000 01111223457899999999999987 5788999999999999986442 22222 2224456
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--EEEEEe--eCC--CeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYV--TER--PVNAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~--~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
+++.++|+|+|+.||+|+.||.|.+|+..+.. +...+. |.. .|+|++||++|++|++-+.|+...+|.+..
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 78999999999999999999999999986542 223333 444 899999999999999999999844444443
No 131
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=154.36 Aligned_cols=243 Identities=19% Similarity=0.319 Sum_probs=177.1
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCC----e--------eeEEec-CCCcceEEEEEc-------CCCcEEEEEeC
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E--------RLGTYR-GHNGAVWCCDVS-------RDSMTLITGSA 72 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~--------~~~~~~-~~~~~v~~i~~~-------~~~~~l~s~~~ 72 (305)
...+.|+|||..|++-+.|..+.+|++... + ...+++ .....|..-+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456889999999999999999999987631 0 011111 123567777774 57789999999
Q ss_pred CCcEEEEecCCCCeeEEEe---eC---CCceEEEEecCCceEEEeCCcceeeeeeEE---------------------EE
Q 021925 73 DQTAKLWNVETGAQLFTFN---FD---SPARSVDFAVGDKLAVITTDPFMELNSAIH---------------------VK 125 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 125 (305)
+.-|++||.-+|+...++. +. ....+++|+|+|..++++....+......+ +.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999999999888776 22 245789999999999998764333322100 00
Q ss_pred EeecccC------------------CCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCC-CcEeeeec
Q 021925 126 RIARDPA------------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTET-GKLLKESD 185 (305)
Q Consensus 126 ~~~~~~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~~~ 185 (305)
.+...+. .....+...+.+|.+.|+.++|.++|+.|++|.. |..|..||++. +.++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 0000000 1234567778899999999999999999999986 78999999986 44555555
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
...+....-.-....|++++|++|+.||.|++||+++ +..+..+. +...++.++++|--++++++++...
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCcee
Confidence 3222222333455678999999999999999999998 67666665 7788999999999888888876653
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=9.4e-24 Score=174.30 Aligned_cols=199 Identities=22% Similarity=0.315 Sum_probs=175.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe---cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
-...+++++.++.|++.+.|...|.|-+|++++|-...++ ..|+++|++++...-++.+++++.+|.++.||..+..
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 4467999999999999999999999999999999988888 4899999999998888899999999999999999999
Q ss_pred eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
.+..+.....+.++.++.....++++.+ +..+.+.+.. ..+.++.+.+|.+.|++++|||||++|++++
T Consensus 527 l~~~l~l~~~~~~iv~hr~s~l~a~~~d-----df~I~vvD~~------t~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 527 LKKSLRLGSSITGIVYHRVSDLLAIALD-----DFSIRVVDVV------TRKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred eeeeeccCCCcceeeeeehhhhhhhhcC-----ceeEEEEEch------hhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 9999999999999999998888877766 3334444442 2356777899999999999999999999999
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-CeEEEEEcCC
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLWDART 222 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~ 222 (305)
.|++|++||+.++.++-.+. -..+.+++.|+|+|.+||+...| .-|++|--.+
T Consensus 596 mD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCCcEEEEeccCcceeeeEe----cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 99999999999999988885 67889999999999999999988 5699997543
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.6e-25 Score=181.96 Aligned_cols=194 Identities=20% Similarity=0.362 Sum_probs=175.5
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
|.+|+.+|.++.|+++..+|++|+.+|+|++||+++++.++++.+|...+.++.|+|-+.+.++|+.|+.+++||.+...
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
+...+. +...+..+.|+|+|.+++.+++ +..+++|+.. .++....+..|.+.+..+.++|..-.+++|
T Consensus 146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-----d~tvki~d~~------agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDVLRLSPDGRWVASGGE-----DNTVKIWDLT------AGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred ceeeecCCcceeEEEeecCCCceeeccCC-----cceeeeeccc------ccccccccccccccccccccCchhhhhccC
Confidence 888887 7777889999999999999887 5667777764 346677788999999999999999999999
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 213 (305)
+.|+++++||+++-+.+.... .....|.+..|+|++..+++|..+.
T Consensus 215 s~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCCceeeeeccceeEEeeccC---CccCCceeeeecCCceeeecCchhh
Confidence 999999999999888877776 4578899999999999888887654
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.6e-24 Score=169.74 Aligned_cols=194 Identities=23% Similarity=0.375 Sum_probs=172.9
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
-.+.+++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.||.+++||..|-+|+-|.+|+.||+++++.+...
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh 589 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH 589 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (305)
Q Consensus 91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 170 (305)
.+.+.|.++.+.|.+.+++++..... +.+... .+.....+.-|.+.|.++.|.+.|+++++.+.|.-+
T Consensus 590 dF~SQIfSLg~cP~~dWlavGMens~-----vevlh~-------skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 590 DFSSQIFSLGYCPTGDWLAVGMENSN-----VEVLHT-------SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred hhhhhheecccCCCccceeeecccCc-----EEEEec-------CCccceeecccccEEEEEEecccCceeeecCchhhh
Confidence 99999999999999999999876322 222111 234456677899999999999999999999999999
Q ss_pred EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
..|....|..+.... ....|.++.++.|.++++||+.|....+|.+
T Consensus 658 nawrtPyGasiFqsk----E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 658 NAWRTPYGASIFQSK----ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhccCccccceeecc----ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999998887775 6789999999999999999999998888865
No 135
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=5.5e-23 Score=156.40 Aligned_cols=195 Identities=22% Similarity=0.315 Sum_probs=157.4
Q ss_pred EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCc
Q 021925 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQT 75 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~ 75 (305)
++.||+++|..++|+| +...||+||.|.+|.||.+..+ +++..+.+|...|.-++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3579999999999999 6678999999999999998764 457788899999999999994 468899999999
Q ss_pred EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
|.+||+.+++.+.++ . |...|.++.|+
T Consensus 156 v~iWnv~tgeali~l----------------------------------------------------~-hpd~i~S~sfn 182 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL----------------------------------------------------D-HPDMVYSMSFN 182 (472)
T ss_pred EEEEeccCCceeeec----------------------------------------------------C-CCCeEEEEEec
Confidence 999999998765432 2 77888999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc-ceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceE---EEE
Q 021925 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL---IKT 228 (305)
Q Consensus 156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~ 228 (305)
.+|.+|++.+.|..|+|||.++++.+..-. +|.+ .-..+.|-.+|.++.||- ++..+.+||..+.+. +.+
T Consensus 183 ~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e 259 (472)
T KOG0303|consen 183 RDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE 259 (472)
T ss_pred cCCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence 999999999999999999999999988775 4443 344566777888554443 378899999776532 344
Q ss_pred EeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 229 YVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 229 ~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+...+.|.---+.|+...+..++..+.
T Consensus 260 lDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 260 LDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred eccCCceEEeeecCCCCEEEEEecCCc
Confidence 456777877788999998877654444
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1e-23 Score=158.62 Aligned_cols=208 Identities=14% Similarity=0.229 Sum_probs=163.8
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC---------------------------C-----------eee
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---------------------------G-----------ERL 45 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~---------------------------~-----------~~~ 45 (305)
..++.|.+.|+.++++. ..+++++.|++|+.|.++. | .++
T Consensus 103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv 180 (433)
T KOG0268|consen 103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPV 180 (433)
T ss_pred heeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCcc
Confidence 35889999999999987 6788889999999997431 1 122
Q ss_pred EEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEE
Q 021925 46 GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (305)
Q Consensus 46 ~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (305)
..+.--.+.|.++.|+| ....|++|+.|+.|.+||++++.++...........++|+|..-.++++.. +..+..
T Consensus 181 ~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E-----D~nlY~ 255 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE-----DHNLYT 255 (433)
T ss_pred ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc-----ccccee
Confidence 23333345678888999 446788888999999999999999999999999999999996555555554 333444
Q ss_pred EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC
Q 021925 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204 (305)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (305)
.++... ..++....+|.+.|.++.|||.|+.+++|+.|.+|+||..+.+.....+.. ..-..|.++.|+.|.+
T Consensus 256 ~DmR~l-----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 256 YDMRNL-----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred hhhhhh-----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc
Confidence 444322 356778899999999999999999999999999999999987765444431 2346799999999999
Q ss_pred EEEEEeCCCeEEEEEcCCceE
Q 021925 205 HFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 205 ~l~~~~~dg~i~iwd~~~~~~ 225 (305)
++++||.|+.|++|.....+.
T Consensus 329 yi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEEecCCCcceeeeecchhhh
Confidence 999999999999998765433
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=4e-23 Score=167.34 Aligned_cols=231 Identities=17% Similarity=0.249 Sum_probs=176.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
.|..++|-|||..|+.+. +..+.+||..+|..+.++++|++.|.+++|+.||+.+++|+.|+.|.+|+-+ -+-+..+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec
Confidence 799999999999888765 4589999999999999999999999999999999999999999999999854 45566788
Q ss_pred eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (305)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 171 (305)
|...+.||.|+|-...+++++-. ....|.... +.+. -......+.+.+|..||++++.|-.+|+|.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLs------dFglWS~~q-------K~V~-K~kss~R~~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLS------DFGLWSPEQ-------KSVS-KHKSSSRIICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchh------hccccChhh-------hhHH-hhhhheeEEEeeecCCCcEEEEeccCceEE
Confidence 99999999999999888877632 222222211 1111 112345678899999999999999999999
Q ss_pred EEeCCCCcEeeeeccccCCccceEEEEEc----------------------------------------------CCCCE
Q 021925 172 IWDTETGKLLKESDKETGHKKTITSLAKA----------------------------------------------ADGSH 205 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----------------------------------------------~~~~~ 205 (305)
+=+- ++++...++.+.+.+++|.+++|+ ++|.+
T Consensus 158 iRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 158 IRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred eecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcE
Confidence 8764 344444444333444455554444 45667
Q ss_pred EEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 206 FLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 206 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
++.|+.|+.+.+|- +.|-.+.++. ....|+.++..|+++++++|+.||.....+
T Consensus 237 ~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 77777777777775 4566666555 667899999999999999999999854443
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=159.16 Aligned_cols=210 Identities=19% Similarity=0.289 Sum_probs=165.6
Q ss_pred ecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~ 83 (305)
-++|+..|.+++|+.+ .+.||+||.|.+|++||+.++++..++..|.+.|.+++|+| ....|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 3579999999999884 45899999999999999999999999999999999999999 567899999999999999983
Q ss_pred -CCeeEEEeeCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925 84 -GAQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT 160 (305)
Q Consensus 84 -~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 160 (305)
++.-..++..+.|..++|.|.....+ ++++ ++.++..+++. .++++..++.|.++|.++++++.. .+
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td-----dG~v~~~D~R~-----~~~~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD-----DGTVYYFDIRN-----PGKPVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecC-----CceEEeeecCC-----CCCceeEEEeccCCcceEEecCCCCcc
Confidence 44556677899999999999665444 4433 34445555543 348899999999999999999876 57
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceEE
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELI 226 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 226 (305)
+++++.|+.|++|++....+...... .-.-+...|+++.|+-. .++.|+..+.+++||+.+..++
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeeccccceEEEEeecCCCCcccccc-cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 88999999999999975444222210 01123466777777654 5788888899999999877654
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=9.5e-23 Score=165.26 Aligned_cols=252 Identities=21% Similarity=0.208 Sum_probs=183.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------------------------------------
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----------------------------------------- 43 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----------------------------------------- 43 (305)
++.||++.|+++.|+|.+..|++++.|+++.+|...+..
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 366999999999999999999999999999999654320
Q ss_pred -----------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe----eCCCceEEEEecCCce
Q 021925 44 -----------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN----FDSPARSVDFAVGDKL 107 (305)
Q Consensus 44 -----------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~----~~~~v~~~~~~~~~~~ 107 (305)
....+.+|.+.|++++|+|.|++|+++|.|-+-+++-.-.. +.-+.+. |.....|+++-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 01113479999999999999999999999999999865411 1122222 6667888888886555
Q ss_pred EEEeCCcceeeee----------------------------eEEEEEeeccc--------------------C-------
Q 021925 108 AVITTDPFMELNS----------------------------AIHVKRIARDP--------------------A------- 132 (305)
Q Consensus 108 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~--------------------~------- 132 (305)
++.+.+..+.... .+....+.... .
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 5555441110000 00000000000 0
Q ss_pred C----------CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925 133 D----------QGGESVLILKGPQGRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSL 197 (305)
Q Consensus 133 ~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 197 (305)
. .....++++.+|...|++++.+|+++.+|+++.. ..|++|+..+...++.+. +|.-.|+.+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~HsLTVT~l 578 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GHSLTVTRL 578 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---ccceEEEEE
Confidence 0 0012235677899999999999999999999854 469999999988888777 899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCceE-EEE---Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 198 AKAADGSHFLTGSLDKSAKLWDARTLEL-IKT---YV-TERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
+|||||++|++.|.|.++.+|....... ... .+ |..-|+++.|+|++.++++++.|....++
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 9999999999999999999998753321 112 22 67778999999999999999999984333
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.7e-22 Score=165.52 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=189.2
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
|-.+.-|...|.+++.. +.++++|+.+++|.+|...+++.-..+....-++.+++|+.+|+++|.||.|-.|++-+..
T Consensus 49 P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 49 PETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred CchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence 33444477778887764 4599999999999999999988766666677899999999999999999999999999998
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-Eec-cCCCeeEEEEcCCCC
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKG-PQGRINRAVWGPLNR 159 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~~~~~~~~ 159 (305)
.......+. +..+|.++.|+|.++++++.+- ++.+.+|++...........+.. ... ....+..++|+|++.
T Consensus 127 D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-----dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-----DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred ccchheeecccCCceeeeeEcCCCCEEEEEec-----CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 887777666 9999999999999999999864 67777887753322111111111 011 145567899999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 239 (305)
.++..+.|+.|++|+...+.....+... .+...+..++|+|+|++||+++.||.|.|||.++.+. ......|.+++
T Consensus 202 ~la~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~a 277 (933)
T KOG1274|consen 202 TLAVPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEA 277 (933)
T ss_pred eEEeeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEe
Confidence 9999999999999999999888887643 2344599999999999999999999999999998222 23566799999
Q ss_pred ecCCCCcEEEeeCCc
Q 021925 240 MSPLLDHVCIGEPQT 254 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~ 254 (305)
|.|+.+.+-.-...+
T Consensus 278 w~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 278 WKPNANAITLITALG 292 (933)
T ss_pred cCCCCCeeEEEeecc
Confidence 999988765544333
No 141
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=149.92 Aligned_cols=204 Identities=19% Similarity=0.226 Sum_probs=151.3
Q ss_pred EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe-----eEEEeeCCCceEEEEecCCceEEEeCCcceeeee
Q 021925 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-----LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120 (305)
Q Consensus 46 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
..+++|.+.|++++|+.||++|++++.|+.|++|+++.... +...-.-+..+.+.|.||-+.+++.... ..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~----g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR----GN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc----CC
Confidence 35679999999999999999999999999999999875422 2111133477889999998777665431 23
Q ss_pred eEEEEEeecccCCCCC------ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccce
Q 021925 121 AIHVKRIARDPADQGG------ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194 (305)
Q Consensus 121 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 194 (305)
.+.++.+......... ......+.|+-.+..+-...++++|++++.|..|.+||++ |+.+..+. .....-
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---tnq~~n 231 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---TNQSSN 231 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---cccccc
Confidence 3444444332221111 1112334566777777788888999999999999999998 88888876 344556
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcC---Cc-----eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925 195 TSLAKAADGSHFLTGSLDKSAKLWDAR---TL-----ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 257 (305)
+..+.||+|+++++++..--|++|..- .| ..+.++. |.+.|..++|+|+.+.+++.+.||...
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence 677899999999999999999999863 22 2233344 889999999999999999999999843
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.8e-20 Score=149.49 Aligned_cols=215 Identities=17% Similarity=0.153 Sum_probs=160.9
Q ss_pred eEEEEEcCCCCEEEEe-eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC-cEEEEecCCCCeeEEE
Q 021925 13 LTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-TAKLWNVETGAQLFTF 90 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~ 90 (305)
+..++|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 5678999999977654 5689999999998887777763 34568899999999999888765 4677899888777666
Q ss_pred eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-------CCCeeEEEEcCCCCEEEE
Q 021925 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-------QGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~ 163 (305)
.....+..++|++++..++++.. ..+.+.++++... +....+..+ ......++++|++++++.
T Consensus 154 ~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 154 LVDQRPRFAEFTADGKELWVSSE----IGGTVSVIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred EcCCCccEEEECCCCCEEEEEcC----CCCEEEEEEcCcc------eeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 66667788999999998866542 1234555555321 222222111 112346889999998654
Q ss_pred e-eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEeeCCCeeEEEec
Q 021925 164 A-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (305)
Q Consensus 164 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 241 (305)
+ +.++.+.+||+++++....+. +...+.+++|+|+|++|+++ +.+|.|++||+++++.+..+..+...+.++++
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 299 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVR 299 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeC
Confidence 4 456789999999888776553 34578899999999999876 46899999999999999999977778999887
Q ss_pred C
Q 021925 242 P 242 (305)
Q Consensus 242 ~ 242 (305)
|
T Consensus 300 ~ 300 (300)
T TIGR03866 300 P 300 (300)
T ss_pred C
Confidence 6
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=160.61 Aligned_cols=251 Identities=18% Similarity=0.176 Sum_probs=181.0
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE--ecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~ 82 (305)
...|...|.++.|-|....|++++.|.+++.||+.+.+.... +.+|.+.|.+++|.| |...|++|+.||.+.|||++
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 457999999999999767899999999999999999888776 889999999999999 55688999999999999987
Q ss_pred CCCe--------------------eE-------E-EeeCCCceE---EEEecCCceEEEeCCcceeeeeeEEEEEeeccc
Q 021925 83 TGAQ--------------------LF-------T-FNFDSPARS---VDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131 (305)
Q Consensus 83 ~~~~--------------------~~-------~-~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (305)
-... .. . ......+.+ +.+..|+..++.++. .++.+++|++.+..
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga----~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA----ADSTIKVWDLRKNY 251 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC----CCcceEEEeecccc
Confidence 3220 00 0 002223333 555666777766654 47889999998876
Q ss_pred CCCCCceEEEEecc-----CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCC
Q 021925 132 ADQGGESVLILKGP-----QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGS 204 (305)
Q Consensus 132 ~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (305)
.....++.....-+ .-.+.++.....|.+|++.+.|+.|++||+.... ++..+.......-.+ .-..+|++.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~ 330 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDC 330 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCc
Confidence 65555554443333 3356777888888999998899999999998643 333332111111122 234689999
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCc-EEEeeCCcEEEEEEeehhhh
Q 021925 205 HFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 205 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 266 (305)
++++|+.|...++|.+.+.+.--... |...|++++|.|...- ++++++|.. +++|.+
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~-----~kiW~l 390 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR-----VKIWRL 390 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc-----eEEEec
Confidence 99999999999999998765433322 7788999999886543 666665555 555555
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2e-21 Score=143.49 Aligned_cols=234 Identities=16% Similarity=0.237 Sum_probs=170.7
Q ss_pred ecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCC---------CeeeEEecCCCcceEEEEEcC--CCcEEEEEeC
Q 021925 6 MKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADN---------GERLGTYRGHNGAVWCCDVSR--DSMTLITGSA 72 (305)
Q Consensus 6 l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~---------~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~ 72 (305)
-+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. -....++....+.|++++|.| -|-.|++++.
T Consensus 55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a 134 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA 134 (361)
T ss_pred EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence 467999999999965 689999999999999996421 123456667788999999999 5678999999
Q ss_pred CCcEEEEecCCCCeeEE------Ee--------eCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCCC
Q 021925 73 DQTAKLWNVETGAQLFT------FN--------FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~------~~--------~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (305)
||.|+||+....-.+.. ++ +..+..|+.|+|. ..+++++.+......+...++..... ...
T Consensus 135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~--~rK 212 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN--GRK 212 (361)
T ss_pred CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC--cce
Confidence 99999998754432222 22 4556778889873 46777777653333334444443322 123
Q ss_pred CceEEEEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCCc-----------------EeeeeccccCCccce
Q 021925 136 GESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGK-----------------LLKESDKETGHKKTI 194 (305)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v 194 (305)
-..+..+.+|..+|++++|.|+- ..||+++.|| |+||.++... ++..+....+|++.|
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 34556677999999999999973 4789999999 9999987311 233344455899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcC---CceEEEEEeeCCCeeEEEecC
Q 021925 195 TSLAKAADGSHFLTGSLDKSAKLWDAR---TLELIKTYVTERPVNAVTMSP 242 (305)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~ 242 (305)
..+.|+-.|..|++.+.||.||+|... ..++...+..+..+....+++
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 999999999999999999999999754 345666666665555555543
No 145
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=5.4e-22 Score=160.93 Aligned_cols=250 Identities=17% Similarity=0.265 Sum_probs=193.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
.+.||.+.|++++|+|.|++|++++.|-+-|++-.-.. -.+.+-+-|...++|++|-+....+++|.....+++|+
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 46899999999999999999999999999999864411 12333345888899999998666889999999999998
Q ss_pred cC-------------------------------------------CCCe-------------------------------
Q 021925 81 VE-------------------------------------------TGAQ------------------------------- 86 (305)
Q Consensus 81 ~~-------------------------------------------~~~~------------------------------- 86 (305)
.. +|..
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 65 0000
Q ss_pred ---eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 87 ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 87 ---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
.+.+.|...+.+++.+|++++++++..........+.+|..... .....+.+|.-.|+.++||||+++|++
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------LQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------hhhheecccceEEEEEEECCCCcEEEE
Confidence 00112455789999999999999998877777777777777543 445578999999999999999999999
Q ss_pred eeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eEEEE---EeeCCCeeE
Q 021925 164 AGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKT---YVTERPVNA 237 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~---~~~~~~v~~ 237 (305)
.+.|.++.+|....... -..+.....|..-|.++.|+|++.+++|+|.|.+|++|..... +.+.. ..+..+|+.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 99999999999854321 1222234479999999999999999999999999999998877 44443 347889999
Q ss_pred EEecCCC-----CcEEEeeCCcEEEEEE
Q 021925 238 VTMSPLL-----DHVCIGEPQTIKFMLL 260 (305)
Q Consensus 238 ~~~~~~~-----~~l~~~~~~~~~~~~~ 260 (305)
+++.|-. ..+++|-..|.+.++.
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEe
Confidence 9987632 2566676666644433
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-22 Score=157.66 Aligned_cols=218 Identities=12% Similarity=0.152 Sum_probs=180.8
Q ss_pred EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC
Q 021925 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 93 (305)
.|++......++++|+..+.|+|||++...+.+.+++|.+.|+++.++....+||+++..|.|.|..+.++.....+.++
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 34444444579999999999999999977778888999999999999998899999999999999999999888877744
Q ss_pred --CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcE
Q 021925 94 --SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIV 170 (305)
Q Consensus 94 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i 170 (305)
..++-+.|++..+.++.... ..+.+.+|+.... .+.....+.|..+...++|+|.+ .+|++.+.|..|
T Consensus 163 sgqsvRll~ys~skr~lL~~as----d~G~VtlwDv~g~-----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIAS----DKGAVTLWDVQGM-----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred CCCeEEEeecccccceeeEeec----cCCeEEEEeccCC-----CcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence 55678999998876665432 2667788887532 23344557899999999999976 577889999999
Q ss_pred EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eEEEEEe-eCCCeeEEEecCCC
Q 021925 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLL 244 (305)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~ 244 (305)
.+||++..+....+. ...+.+.++|.++|.+|+.|+..|.|..||++.. .++.... |...|++++|-|.-
T Consensus 234 ~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 234 NIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999888777775 6788999999999999999999999999999965 5666665 88889999998874
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.6e-23 Score=175.75 Aligned_cols=240 Identities=16% Similarity=0.237 Sum_probs=184.8
Q ss_pred ccceEEEEEcCCCCE----EEEeeCCCceEEEEcCC---C---eeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEE
Q 021925 10 ERPLTYLKYNKDGDL----LFSCAKDHTPTVWFADN---G---ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKL 78 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~----l~s~~~dg~v~iw~~~~---~---~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~v 78 (305)
...-+.++|.+.|.. ||.|..||.|.+||... + ..+.+...|.+.|..+.|++. ++.||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456788999997765 88899999999999764 2 245667789999999999995 459999999999999
Q ss_pred EecCCCCeeEEE---eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC--CeeEEE
Q 021925 79 WNVETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAV 153 (305)
Q Consensus 79 wd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~ 153 (305)
||+.+.+..... ...+.|.+++|+..-..++++.. -.+...+|+++.. +++..+..+.+ .+..+.
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s----~sg~~~iWDlr~~------~pii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS----PSGRAVIWDLRKK------KPIIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC----CCCCceeccccCC------CcccccccCCCccceeeee
Confidence 999876554444 26778999999987655444432 1445667777643 34444444433 467899
Q ss_pred EcCCC-CEEEEeeCC---CcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEE
Q 021925 154 WGPLN-RTIISAGED---AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 154 ~~~~~-~~l~~~~~d---g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
|+|+. ..+++++.| -.|.+||+|. ..+++.++ +|...|.++.|++.+ ++|++++.|++|.+|+.++++.+.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 99987 456666654 3799999986 34566665 899999999999965 889999999999999999999999
Q ss_pred EEe-eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEee
Q 021925 228 TYV-TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 228 ~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~ 262 (305)
.+. .+..+..+.|.|... .+++++-++.+-+..+.
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 998 677899999999988 56667777765544444
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.4e-22 Score=152.63 Aligned_cols=232 Identities=18% Similarity=0.291 Sum_probs=168.2
Q ss_pred CCCEEEEeeCCCceEEEEcCCCe---ee------------------EEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEE
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGE---RL------------------GTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKL 78 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~---~~------------------~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~v 78 (305)
.|+++|.|+.|..|.|||+.=.. +. ....+|++.|..+.|+.+ .+.|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999875110 00 112368999999999874 468899999999999
Q ss_pred EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
||+.++++..++. +...|.++.|+|....++..+. .++.+.+.+.+... .....-.-.+.|..++|.|.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs----~D~~V~l~D~R~~~------~s~~~wk~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS----YDGTVALKDCRDPS------NSGKEWKFDGEVEKVAWDPH 340 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEecc----ccceEEeeeccCcc------ccCceEEeccceEEEEecCC
Confidence 9999999999998 8899999999997654444331 24445555544211 11111223567889999997
Q ss_pred C-CEEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEe---e
Q 021925 158 N-RTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYV---T 231 (305)
Q Consensus 158 ~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~ 231 (305)
. ..++++..||.|+-+|+|.. +++.++. .|..+|.++++++.- .++++++.|+.|++|++..-.+..... .
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 7 46777888999999999975 8888887 899999999998843 468899999999999987544432222 1
Q ss_pred CCCeeEEEecCCCCcEEE-eeCCcEEEEEEeehhhhhhhh
Q 021925 232 ERPVNAVTMSPLLDHVCI-GEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 270 (305)
-+...|+++.|+-..+++ |+..+ . +++|+.....
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~-~----~~vwd~~~~~ 452 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKA-V----LRVWDIFTNS 452 (463)
T ss_pred ccceeecccCCCcceEEEecCccc-e----EEEeecccCh
Confidence 233778889998876554 55444 3 5666654433
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.9e-22 Score=165.37 Aligned_cols=241 Identities=15% Similarity=0.201 Sum_probs=177.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe----eeEEecC---CCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRG---HNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----~~~~~~~---~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~ 82 (305)
....++..+++-..|+.++. ..++|+.+.... +...+.. -...+..+.|.. +.++|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45667788888888888774 477888765432 1112111 112456778876 56799999999999999998
Q ss_pred C---CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-
Q 021925 83 T---GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL- 157 (305)
Q Consensus 83 ~---~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 157 (305)
. .+.+..+. |...+.++.|++-...+++.+. .++.++.|++... +....+.+....|..++|+|.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS----QDg~vK~~DlR~~------~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS----QDGTVKCWDLRSK------KSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecC----CCceEEEEeeecc------cccccccccchhhhceeeccCC
Confidence 6 34444554 8889999999996655544432 3778888998754 344455667788999999995
Q ss_pred CCEEEEeeCCCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eEEEEEeeCCC
Q 021925 158 NRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERP 234 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~ 234 (305)
+.+++++.+.|.+++||++... +...+. +|.++|.++.|+|++.+||||+.|+.|+|||..+. +++.++....+
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiap 265 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLT---AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAP 265 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhh---cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecce
Confidence 4789999999999999998643 334444 89999999999999999999999999999999865 45667778899
Q ss_pred eeEEEecCCCCc-EEEeeCCcEEEEEEeehhhhhh
Q 021925 235 VNAVTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 235 v~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
|.++.|-|..++ |++++. .....+++|++.-
T Consensus 266 v~rVkWRP~~~~hLAtcsm---v~dtsV~VWDvrR 297 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSM---VVDTSVHVWDVRR 297 (839)
T ss_pred eeeeeeccCccchhhhhhc---cccceEEEEeecc
Confidence 999999999886 444421 1122366666543
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=5.7e-21 Score=145.94 Aligned_cols=259 Identities=16% Similarity=0.216 Sum_probs=183.3
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC--------C--------CeeeEEecCCCcceEEEEEcCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--------N--------GERLGTYRGHNGAVWCCDVSRDSMTLI 68 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~ 68 (305)
.|..|...|+++.|+|+|+.||+|+.+|.|.+|... + -...+.+.+|...|..++|+|++.+++
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 477899999999999999999999999999999655 2 123456778999999999999999999
Q ss_pred EEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcc-eee-----eeeEEEEE----eecccCCCCCc
Q 021925 69 TGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPF-MEL-----NSAIHVKR----IARDPADQGGE 137 (305)
Q Consensus 69 s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~----~~~~~~~~~~~ 137 (305)
+++.|..+++||+..|+...... +...+..++|.|-+.+++.-+... ... ...+.... .........++
T Consensus 140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 99999999999999999988887 888999999999888877655432 100 00011000 01111112222
Q ss_pred eEEEEecc--CCCeeEEEEcCCCCEEEEeeC----CCc-----EEEEeCCC-CcEeeeeccccCCccceEEEEEcC----
Q 021925 138 SVLILKGP--QGRINRAVWGPLNRTIISAGE----DAI-----VRIWDTET-GKLLKESDKETGHKKTITSLAKAA---- 201 (305)
Q Consensus 138 ~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~----dg~-----i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~---- 201 (305)
..+.+... ..-...++|+|+|..+++... .+. .++++-.. .++...+. ....+...+.++|
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---SPKKPALAVRFSPVYYE 296 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---CCCcceEEEEeeeeEEE
Confidence 22222211 223456889999998887542 222 35555432 23333333 3344444555544
Q ss_pred --------------CCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 202 --------------DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 202 --------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
-+-.+|.++ ...|++||.++..++.... |-.++++++|+++|..+++.+.||.-.++.+.-|.
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 122345555 5579999999999988776 88899999999999999999999999888888887
Q ss_pred hh
Q 021925 266 LF 267 (305)
Q Consensus 266 ~~ 267 (305)
+.
T Consensus 376 lg 377 (434)
T KOG1009|consen 376 LG 377 (434)
T ss_pred cc
Confidence 65
No 151
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.7e-22 Score=152.13 Aligned_cols=199 Identities=21% Similarity=0.148 Sum_probs=153.4
Q ss_pred EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--
Q 021925 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-- 91 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-- 91 (305)
.+++|+.+|..|++|+.||.+|||+.++...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999998888888888899999999999999999999999 89999999996665554
Q ss_pred -eCCCceEEEEecCC---ceEEEeC--CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 92 -FDSPARSVDFAVGD---KLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 92 -~~~~v~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
.+.....+.|+.++ .+.+.+. .........+..|.-. ..-...........|.+++.+++|++++.|+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS------NFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc------cccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 33445667777766 3333322 2111111222222221 1111122223345799999999999999999
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
.||.|-|++..+-+.++-.+. .|...|+.+.|+|+.+++++.+.|.+..+..+.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcEEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999999988877776653 789999999999999999999999988887765
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-21 Score=157.98 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=108.5
Q ss_pred eeeEEEEEeeccc-CCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925 119 NSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196 (305)
Q Consensus 119 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 196 (305)
++.+++|.+.... ......+...+..|...|+++.|+|-. +.|++++.|-+|++||+++++....+. +|...|..
T Consensus 649 dg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~---gHtdqIf~ 725 (1012)
T KOG1445|consen 649 DGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV---GHTDQIFG 725 (1012)
T ss_pred CceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec---cCcCceeE
Confidence 4556777776543 234456778899999999999999964 688899999999999999998888887 89999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCce-EEEEEe--eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 197 LAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYV--TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
++|+|+|+.+++.+.||+|++|+.++++ ++++-. .+.+-..+.|.-+|+++++.+-+..
T Consensus 726 ~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 726 IAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred EEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 9999999999999999999999998764 333332 2334467889999999888776654
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=7.6e-22 Score=156.60 Aligned_cols=209 Identities=18% Similarity=0.296 Sum_probs=171.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v 76 (305)
++..|.+.|+++.|+|....|++++.||.+++|+++. -+++.++.+|.++|.|++..+++..+++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5788999999999999999999999999999999832 35788999999999999999999999999999999
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
+.|++....-.. .. .........+.||.+.++.+++|+
T Consensus 369 ~~w~~p~n~dp~----------------ds--------------------------~dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 369 RCWNLPPNQDPD----------------DS--------------------------YDPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred eeeccCCCCCcc----------------cc--------------------------cCcchhccceeccccceeeeeecc
Confidence 999876221100 00 001123345789999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeecc-------------------------------------------------c
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDK-------------------------------------------------E 187 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------------~ 187 (305)
....|++++.||++++|+.....+ ..+.. .
T Consensus 407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence 999999999999999999875544 11100 0
Q ss_pred cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 188 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
......++.+.++|.+.+.+++..|+.|+++|..+++++.... |...++++++.|+|.+|++++.++.+
T Consensus 486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv 555 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSV 555 (577)
T ss_pred ccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCcee
Confidence 0112456778889999999999999999999999999998877 88899999999999999999999873
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-21 Score=150.03 Aligned_cols=208 Identities=13% Similarity=0.194 Sum_probs=178.5
Q ss_pred ccc-cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 8 GHE-RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 8 ~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
|+. ..+.....++++++|+..+..|.|.+-...+++.+.+++ ..+.|..+.|+.+++.|++++.+|.|.+||+++..+
T Consensus 300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 443 357788899999999999999999999999999999988 678999999999999999999999999999999999
Q ss_pred eEEEeeCCCce--EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 87 LFTFNFDSPAR--SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 87 ~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
+..+...+.+. +++.++++.+++++++ .+.+.+++..........+++..+..-...|++++|+|+.+.||.+
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~-----~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGSYLATGSD-----SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred EEEEeecCccceeeeeecCCCceEEeccC-----cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 99998777665 5666789999999987 4555666655555556667788888888899999999999999988
Q ss_pred eC--CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 165 GE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 165 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
+. +..+++-.+.+......++.....-+.|+||+|+|.+.+||.|..+|++.+|.+.
T Consensus 454 S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 454 SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 75 6789999998888877777665666789999999999999999999999999874
No 155
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=8.6e-21 Score=139.08 Aligned_cols=238 Identities=18% Similarity=0.266 Sum_probs=172.8
Q ss_pred EecccccceEEEEEcC-CCCEEEEeeCC-------CceEEEEcCCC---------eeeEEec-CCCcceEEEEEcCCCcE
Q 021925 5 LMKGHERPLTYLKYNK-DGDLLFSCAKD-------HTPTVWFADNG---------ERLGTYR-GHNGAVWCCDVSRDSMT 66 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~d-------g~v~iw~~~~~---------~~~~~~~-~~~~~v~~i~~~~~~~~ 66 (305)
+|..|.+.|..++-+| +.+.|+|+..+ ..+.||.++.. +.+..+. .+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 4677899999999999 56677776543 24679988643 2233333 35568999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCe-eEEEe------eCCCceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925 67 LITGSADQTAKLWNVETGAQ-LFTFN------FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137 (305)
Q Consensus 67 l~s~~~dg~v~vwd~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (305)
+++-. |..|.+|+++++.. +..+. +.....+-+|+| ++..+++..+ ..+..|+.+... +
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d------~tl~~~D~RT~~-----~ 205 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD------STLQFWDLRTMK-----K 205 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC------CcEEEEEccchh-----h
Confidence 88765 78999999987765 33333 234456677888 6777777664 445555554321 2
Q ss_pred eEEEEeccCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCe
Q 021925 138 SVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKS 214 (305)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 214 (305)
....-..|...+..+.|+|+.+ +|++|+.||.|++||.+.. .++..+. +|...|.++.|+|. .+++++|+.|..
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceEEEEEEecCccceEEEecCCCce
Confidence 2233456778899999999875 6789999999999999864 4566665 89999999999994 467889999999
Q ss_pred EEEEEcCCc------------------------e-----EEEEEe-eCCCeeEEEecCCCCcEEEe-eCCcEEE
Q 021925 215 AKLWDARTL------------------------E-----LIKTYV-TERPVNAVTMSPLLDHVCIG-EPQTIKF 257 (305)
Q Consensus 215 i~iwd~~~~------------------------~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~~~~ 257 (305)
|.+|...+- + .+.++. |+..|.+++|+.-.+++++. +.||..+
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 999965320 1 123444 78889999999999998776 5566543
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=2.1e-21 Score=144.55 Aligned_cols=242 Identities=15% Similarity=0.180 Sum_probs=182.5
Q ss_pred cccccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEec
Q 021925 7 KGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNV 81 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~ 81 (305)
..|.+....++|+-+ ..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.++|+ .++++++|.|..|++|++
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 357888888999763 347889999999999999999999999999999999999995 478999999999999999
Q ss_pred CCCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC------------C-------c-
Q 021925 82 ETGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG------------G-------E- 137 (305)
Q Consensus 82 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-------~- 137 (305)
++..++..+. |...|.++.|+.++..++.++- +..+.+|.+........ . .
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm-----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM-----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC-----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 9999999987 8889999999999998888764 66777777752211000 0 0
Q ss_pred -e-EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeC-CCCcEeeeecc----------ccCCccceE--EEEEcCC
Q 021925 138 -S-VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT-ETGKLLKESDK----------ETGHKKTIT--SLAKAAD 202 (305)
Q Consensus 138 -~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~----------~~~~~~~v~--~~~~~~~ 202 (305)
+ ...-.-|...|.|+.|- |+++++-+-++.|..|-. +-++.+..... ..-....+. ..+|.|-
T Consensus 241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 0 01223466677777776 678888888899999987 22222111110 001222333 4456777
Q ss_pred CCEEEEEeCCCeEEEEEcCCceEEE--EEe---eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 203 GSHFLTGSLDKSAKLWDARTLELIK--TYV---TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 203 ~~~l~~~~~dg~i~iwd~~~~~~~~--~~~---~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+++||.|...|.|++||++..++.. ++. ....|...+|+.|+..|+...+++.
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 8899999999999999999876632 222 4567999999999999998888876
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-21 Score=152.36 Aligned_cols=238 Identities=14% Similarity=0.206 Sum_probs=174.3
Q ss_pred eEEEEEcCCCC-EEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 13 LTYLKYNKDGD-LLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 13 v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
+.++.|+.... .+++.+.|..+++|.-... +....-....+.-.|++......++++|+..++|+|||++...+...
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~ 116 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF 116 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence 88999987653 2334456888999963321 22111111222345555555668999999999999999995555555
Q ss_pred Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCE-EEEeeC
Q 021925 90 FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRT-IISAGE 166 (305)
Q Consensus 90 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-l~~~~~ 166 (305)
++ +...|.++.++..+.+++..+.+ +.+.+..+... .....+... ...+.-+.++|..+. |.+++.
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~------~~tt~f~~~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTK------QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccC-----CcEEEEecccC------ccccceecCCCCeEEEeecccccceeeEeecc
Confidence 55 88999999999999999988763 33333333221 112222222 334557899998865 557889
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 245 (305)
+|.|.+||.....+..... ..|..+...++|+|. ..+|++.+.|..|.+||.+..+....+....|...++|+++|.
T Consensus 186 ~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT 263 (673)
T ss_pred CCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCce
Confidence 9999999998877766654 369999999999994 5578899999999999999998888888899999999999999
Q ss_pred cEEEeeCCcEEEEEEeeh
Q 021925 246 HVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~ 263 (305)
+|++|+..|..+.+.++.
T Consensus 264 ~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRS 281 (673)
T ss_pred EEEeecCCceEEEEeccc
Confidence 999999999876666553
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=8.8e-22 Score=146.54 Aligned_cols=210 Identities=18% Similarity=0.295 Sum_probs=146.6
Q ss_pred EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
.+.||...|+.+.++|+. +++++++.|.+|++|++++..++..+- +|.+.|.++.|+++|.+|++++.|.+|++|+
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence 367999999999999954 789999999999999999999988874 6999999999999999999999999999999
Q ss_pred cCCCCeeEEEe-----------------------------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecc-
Q 021925 81 VETGAQLFTFN-----------------------------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD- 130 (305)
Q Consensus 81 ~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 130 (305)
+...+....++ |...|.|+.|- +.+++.-+- .+.+..|..-..
T Consensus 210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc-----enaI~~w~pgkl~ 282 (385)
T KOG1034|consen 210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC-----ENAIVCWKPGKLE 282 (385)
T ss_pred cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc-----CceEEEEecchhh
Confidence 97432211111 12222222222 122222211 223333333111
Q ss_pred -------cCCCCCceEEEEeccCCCeeEEE--EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec-cccCCccceEEEEEc
Q 021925 131 -------PADQGGESVLILKGPQGRINRAV--WGPLNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKA 200 (305)
Q Consensus 131 -------~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~ 200 (305)
+..........+.-....|.-+. |.|-++.||.|.+.|.|.+||++...+...-. ........|...+|+
T Consensus 283 e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS 362 (385)
T KOG1034|consen 283 ESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS 362 (385)
T ss_pred hhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec
Confidence 11111223344455555666655 45667999999999999999999876642211 111235679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC
Q 021925 201 ADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 201 ~~~~~l~~~~~dg~i~iwd~~ 221 (305)
.|+.+|+..+.|++|.-||-.
T Consensus 363 ~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 363 RDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999853
No 159
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.88 E-value=2.9e-21 Score=152.73 Aligned_cols=210 Identities=20% Similarity=0.274 Sum_probs=164.1
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE-EeeCCCceEEEE
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDF 101 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~v~~~~~ 101 (305)
..++.++.||.+.|-+ ..++..+.+.+|.+.+.+-.|+|||.-|++++.||.|++|.- +|-...+ .+...+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence 4678889999999987 567777889999999999999999999999999999999984 4433333 347889999999
Q ss_pred ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe
Q 021925 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181 (305)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 181 (305)
.|+...++.+..+.. .+..+ .....+...+.|++-|.++.|+|..+.+++|++|-..++||-. |+.+
T Consensus 154 ~p~S~~vl~c~g~h~------~IKpL------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 154 APNSNSIVFCQGGHI------SIKPL------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL 220 (737)
T ss_pred CCCCCceEEecCCeE------EEeec------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccc
Confidence 998877776654322 22222 2234566788999999999999999999999999999999975 5555
Q ss_pred eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 182 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (305)
..-. .|+.+|++++|.|+ +.++.++. +++++= -...+.|..++||+||..+++|++.|..++..+
T Consensus 221 f~S~---~~ey~ITSva~npd-~~~~v~S~-nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 221 FTSA---AEEYAITSVAFNPE-KDYLLWSY-NTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ccCC---hhccceeeeeeccc-cceeeeee-eeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 5554 69999999999999 56666653 234411 113456889999999999999999998766655
Q ss_pred e
Q 021925 262 Y 262 (305)
Q Consensus 262 ~ 262 (305)
.
T Consensus 286 i 286 (737)
T KOG1524|consen 286 I 286 (737)
T ss_pred e
Confidence 4
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=5.7e-21 Score=145.58 Aligned_cols=155 Identities=25% Similarity=0.352 Sum_probs=132.8
Q ss_pred EecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEE
Q 021925 47 TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (305)
Q Consensus 47 ~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (305)
.+.+|.++|..++|+| +...|||||.|.+|.||++..+.....
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------ 119 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------ 119 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------------------------
Confidence 4568999999999999 677899999999999999876544322
Q ss_pred EeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC
Q 021925 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (305)
..+++..+.+|...|--++|+|.- +.|++++.|..|.+||+.+++.+-.+. |...|.++.|+.||.
T Consensus 120 ---------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs 186 (472)
T KOG0303|consen 120 ---------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGS 186 (472)
T ss_pred ---------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCc
Confidence 126778899999999999999976 678899999999999999999888875 999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEEe-e-CCCeeEEEecCCCCcEEEe
Q 021925 205 HFLTGSLDKSAKLWDARTLELIKTYV-T-ERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 205 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~ 250 (305)
.|++.+.|..|+|||.++++.+..-. | +..-..+.|-.+|..+.+|
T Consensus 187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 99999999999999999999998875 3 3345677888888855454
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.7e-21 Score=143.95 Aligned_cols=196 Identities=11% Similarity=0.201 Sum_probs=150.4
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEecCCCCeeEEEee----CCCc
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPA 96 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~v 96 (305)
..+|++...|+|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||+++......+.. +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688899999999999999999999999999999999987 456889999999999999998887766662 2345
Q ss_pred eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeC
Q 021925 97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDT 175 (305)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~ 175 (305)
.+++....+.++++++. .......+.+|+++.... ........|...|++++|+|+. ++|++|+.||-|.++|+
T Consensus 121 ~~ld~nck~~ii~~GtE-~~~s~A~v~lwDvR~~qq----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTE-LTRSDASVVLWDVRSEQQ----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccc-cccCceEEEEEEeccccc----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 66666666777776643 334455667777765432 1334456899999999999976 78999999999999999
Q ss_pred CCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCc
Q 021925 176 ETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTL 223 (305)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 223 (305)
+....--.+...-.+...|.++.|..++ +.|.+-+..++..+|+++.+
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 8643222222122577889999998876 35888888999999988753
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.3e-20 Score=146.12 Aligned_cols=249 Identities=14% Similarity=0.181 Sum_probs=189.1
Q ss_pred eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
+.+.+|..+|.+|.|+| +-..+++.+.||+|++=|++++.. +.++......+.++.|+.+...++.+..=|.+.+||
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID 307 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence 45789999999999999 557899999999999999987643 333433556788899998887888888878999999
Q ss_pred cCCCCe-eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 81 VETGAQ-LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 81 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
++++.. ...+. +...|.+++++|....+++.. ..+....+|+++....... +......|...|.+..|||.+
T Consensus 308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~----s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATA----SLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred eecCCccchhhhhhhcccceeecCCCCchheeec----ccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCC
Confidence 998765 33333 667999999999766555443 2467788898876543322 456667899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCC----CCcEeeeeccccCCcc--ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--
Q 021925 159 RTIISAGEDAIVRIWDTE----TGKLLKESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-- 230 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 230 (305)
..|++.+.|..|+|||.. .-.+...+.....+.. ......|.|+..++++|..-..|-|+|-..++.+.++.
T Consensus 382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 889999999999999983 3344444432111111 23456799999999999999999999999999888876
Q ss_pred eCCCeeE-EEecCCCCcEEEeeCCcEEEE
Q 021925 231 TERPVNA-VTMSPLLDHVCIGEPQTIKFM 258 (305)
Q Consensus 231 ~~~~v~~-~~~~~~~~~l~~~~~~~~~~~ 258 (305)
....|.+ ..|+|-+..+++|+..++.++
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred cccccccceeecccccceeccCCccceEE
Confidence 2334544 479999998888887777644
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=2.5e-21 Score=147.85 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=158.3
Q ss_pred Eeccc-ccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCC---------eeeEEecCCCcceEEEEEcCCCcEEEEEeCC
Q 021925 5 LMKGH-ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD 73 (305)
Q Consensus 5 ~l~~h-~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 73 (305)
.+.-| ..+|..+.|.++.. .+|||+.|..|+||.+..+ +.+..+..|...|+++.|+|+|..|+||+.+
T Consensus 7 ei~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 7 EISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred EEEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 34456 45799999999776 9999999999999977543 2345667899999999999999999999999
Q ss_pred CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 74 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (305)
|.|.+|....-... . ... ......+.......+.+|...|..++
T Consensus 87 g~v~lWk~~~~~~~---~------------~d~---------------------e~~~~ke~w~v~k~lr~h~~diydL~ 130 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIF---D------------ADT---------------------EADLNKEKWVVKKVLRGHRDDIYDLA 130 (434)
T ss_pred ceEEEEEecCcCCc---c------------ccc---------------------hhhhCccceEEEEEecccccchhhhh
Confidence 99999976531100 0 000 00000011233455678999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--- 230 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 230 (305)
|+|+++++++++.|..+++||+..|+....+. .|...+..++|.|-++++++-+.|...+.+++...+.++...
T Consensus 131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~ 207 (434)
T KOG1009|consen 131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI 207 (434)
T ss_pred ccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence 99999999999999999999999999998887 799999999999999999999999877777765433222111
Q ss_pred -----------------eC----CCeeEEEecCCCCcEEEee
Q 021925 231 -----------------TE----RPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 231 -----------------~~----~~v~~~~~~~~~~~l~~~~ 251 (305)
|. .-...++|+|+|.++++..
T Consensus 208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 11 1245678999999998753
No 164
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=5.8e-20 Score=144.31 Aligned_cols=239 Identities=14% Similarity=0.176 Sum_probs=184.0
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
++.++|.+....++.+|+.++++|++.|+.+++|+ ..++..+.. ..+++.|+.|+|.| .++.|...|...+.|.++
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET 437 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence 35679999999999999999999999999999999 445444433 46789999999999 999999999999999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
...+.......++.+++|+|+|.++++++. ++.+.++.+.... .+....-+.+..+|+.+.|++|++++.+
T Consensus 438 ~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-----d~~iyiy~Vs~~g----~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 438 QDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-----DNHIYIYRVSANG----RKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred ceeEEEEecCCceEEEEEcCCCCEEEEecC-----CCeEEEEEECCCC----cEEEEeeeecCceeEEeeecCCCceEEe
Confidence 877777778899999999999999999987 4555555554321 1222333344488999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEeeeecc---------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE--
Q 021925 164 AGEDAIVRIWDTETGKLLKESDK---------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI-- 226 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-- 226 (305)
-+.|-.|..|....-+.+...+. ...+...++.++-+.+++++|+|...|+|++|...--++.
T Consensus 509 ~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 509 NSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred ccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 99999999995433222221110 1134556677777888899999999999999987644333
Q ss_pred -EEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 227 -KTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 227 -~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.++. |.+-|.+++|.-+...+++.+.|..
T Consensus 589 ~he~~ghs~~vt~V~Fl~~d~~li~tg~D~S 619 (626)
T KOG2106|consen 589 SHEYGGHSSHVTNVAFLCKDSHLISTGKDTS 619 (626)
T ss_pred ceeeccccceeEEEEEeeCCceEEecCCCce
Confidence 3333 7888999999988888877775554
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.2e-20 Score=147.91 Aligned_cols=224 Identities=20% Similarity=0.257 Sum_probs=170.4
Q ss_pred eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCc--eEEEeCCcceeeeeeE
Q 021925 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK--LAVITTDPFMELNSAI 122 (305)
Q Consensus 45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~ 122 (305)
-..+.+|++.|.+|...|.|..|++|+.||+|+||.+.++.++..+...+.|.|++|+|.+. +++++.+....+...+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 34567999999999999999999999999999999999999999999999999999999765 3444443332222211
Q ss_pred EEEEeec-------------------------ccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC---CcEEEEe
Q 021925 123 HVKRIAR-------------------------DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED---AIVRIWD 174 (305)
Q Consensus 123 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd 174 (305)
....+.. ....+...-+...-.|...|.++.|+..|.||++...+ ..|.|.+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 1100000 00001112234556788999999999999999987764 4789999
Q ss_pred CCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
+...+....+. ...+.|.++.|+|...+|++++ ...|++||+...+.++.+. ....|..++.+|.|..|++|+.+
T Consensus 553 LSK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 553 LSKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred cccccccCchh---hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 98766655554 4567899999999999988887 5579999999888877776 55678999999999999999999
Q ss_pred cEEEEEEeehhhhhhhhhh
Q 021925 254 TIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~ 272 (305)
+.+.|..+.+-...+..+.
T Consensus 629 ~k~~WfDldlsskPyk~lr 647 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLR 647 (733)
T ss_pred CeeEEEEcccCcchhHHhh
Confidence 9988888776644444443
No 166
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-19 Score=134.41 Aligned_cols=241 Identities=16% Similarity=0.222 Sum_probs=170.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~ 83 (305)
.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++++. ..++|+.+.|+|.. +..++.-.+..-.+-++..
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 578999999999999999999999999999999999999999988 78999999999933 4444444445555555543
Q ss_pred CCeeEEEe------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC-CCeeEEEEcC
Q 021925 84 GAQLFTFN------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ-GRINRAVWGP 156 (305)
Q Consensus 84 ~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 156 (305)
+.. ..+. .+....+..|.+.|+++.+++.. +.+.+.+.. ..+.+..++-.. ..|.++.++.
T Consensus 139 ~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK-----Gkllv~~a~------t~e~vas~rits~~~IK~I~~s~ 206 (405)
T KOG1273|consen 139 PKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK-----GKLLVYDAE------TLECVASFRITSVQAIKQIIVSR 206 (405)
T ss_pred Cce-eeccCCCccccccccccccccCCCCEEEEecCc-----ceEEEEecc------hheeeeeeeechheeeeEEEEec
Confidence 221 1111 12223344688889999888763 222222222 224444444444 6788899999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCc---------EeeeeccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceEE
Q 021925 157 LNRTIISAGEDAIVRIWDTETGK---------LLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELI 226 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~ 226 (305)
.|+.|+.-+.|..|+.|+++.-. +.+.++.. -....-.+++|+.+|.+++.++. ...++||....|.++
T Consensus 207 ~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 207 KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-HhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence 99999999999999999987311 11111111 12234567889999999877664 567999999999999
Q ss_pred EEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 227 KTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 227 ~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
+.+. .+.....+.|+|-...+++-..+...++.
T Consensus 286 KILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 286 KILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA 320 (405)
T ss_pred eeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence 9987 23567899999998888876444443333
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.9e-19 Score=143.61 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=188.3
Q ss_pred eEeccc-ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 4 ILMKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 4 ~~l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.++.|| .+.|.+++|++. ..|.+.+.+|.|.-||+.+++++..+....+.|++++.+|.+..++.|+.||.+..++..
T Consensus 62 ~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence 345565 457999999955 478888899999999999999999999999999999999999999999999988888887
Q ss_pred CCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC-CceEEEEec-cCCCeeEEEEcCC
Q 021925 83 TGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKG-PQGRINRAVWGPL 157 (305)
Q Consensus 83 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~~~~ 157 (305)
.++...... ..+.+.+++|.|++..++.++. ++.+.+|+........- ......+.. ...-|+++.+-.+
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-----Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd 215 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-----DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD 215 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCccEEEeccc-----CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence 776655544 4578999999999998888775 45566666643321110 000001111 2334677777754
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE---E--eeC
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT---Y--VTE 232 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~--~~~ 232 (305)
+ .|++|..-|+|.+||...+.+++.+. .|.+.|.+++..+++..+++++.|+.|.-+...+.+.... . .|.
T Consensus 216 ~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~ 291 (691)
T KOG2048|consen 216 S-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHA 291 (691)
T ss_pred C-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCc
Confidence 4 68999999999999999999998887 7999999999999999999999999999998876644211 1 177
Q ss_pred CCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
..|.+++..++ .+++|+.|....+..
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEEcc
Confidence 78999999888 777888777654433
No 168
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=2.1e-19 Score=133.60 Aligned_cols=235 Identities=16% Similarity=0.209 Sum_probs=174.3
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
+.--.++|+|.+|++|+..+|.+.....|.||.....+ ...+++.|...|++++|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33446799999999999999999999999999877654 678889999999999999999999999999999999984
Q ss_pred CCC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 83 TGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 83 ~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.+. .+..++++...+++.|+|.++.+++++..... .+.-......= --..+.-+.+.+.|++++|+|++
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i-----sVcy~E~ENdW--WVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI-----SVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE-----EEEEEecccce--ehhhhhCCccccceeeeeccCCc
Confidence 442 33445589999999999999999998764322 11111110000 00112234567889999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCC------------------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 159 RTIISAGEDAIVRIWDTETG------------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
-+|++|+.|+..+++..--. +...++ ....+.+..+.|+|+|..|+-.+.|..+.+-|.
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~---~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA---SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh---ccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99999999999999964211 111111 135678999999999999999999999999998
Q ss_pred CCce-EEEEEe-eCCCeeEEEecCCCCcEEEe
Q 021925 221 RTLE-LIKTYV-TERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 221 ~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~ 250 (305)
.... .+.... ..-|..++.|-.+...+++|
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred CCCchhccchhhccCCceeeEeecCCceeecC
Confidence 7664 333333 34667777776665444444
No 169
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=1e-18 Score=132.35 Aligned_cols=234 Identities=12% Similarity=0.130 Sum_probs=176.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC--CcEEEEecCCCCe
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQ 86 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--g~v~vwd~~~~~~ 86 (305)
....+..+.|+.+...|..|+.||. +++..+..............|..+-|+.. ++|..+.+ +.+++.+++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence 3456788889999999999999975 78877655442222223345666667644 66555543 4599999999999
Q ss_pred eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---eccCCCeeEEEEcCCCCEEEE
Q 021925 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+..+..+.+|.++.++.+-..++.. ..+.++++... +.++.+ ..+...+.+++.++.+.+++.
T Consensus 81 ICe~~fpt~IL~VrmNr~RLvV~Le--------e~IyIydI~~M------klLhTI~t~~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRKRLVVCLE--------ESIYIYDIKDM------KLLHTIETTPPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred EEEEecCCceEEEEEccceEEEEEc--------ccEEEEecccc------eeehhhhccCCCccceEeeccCCCCceEEe
Confidence 9999999999999988765444432 33555555322 222222 234455666777777778885
Q ss_pred ee--CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceEEEEEe---eCCCeeE
Q 021925 164 AG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYV---TERPVNA 237 (305)
Q Consensus 164 ~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~---~~~~v~~ 237 (305)
-+ ..|.|.+||..+-+++..+. .|.+.+.+++|+++|.+|||+|..|+ |||+.+.+|+.+.+|+ ....|.+
T Consensus 147 p~s~t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYS 223 (391)
T ss_pred cCCCCCceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEE
Confidence 43 46999999999999998888 89999999999999999999999998 8999999999999998 3456899
Q ss_pred EEecCCCCcEEEeeCCcEEEEEEee
Q 021925 238 VTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
++|+|++++|++.++.+.+.+.-+.
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEec
Confidence 9999999999999888875555443
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=2e-20 Score=135.42 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=178.3
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+|++|.+.|+++.|..+++ |.+|..-|.|++|++++.+.+..++ .|...|+.+.-.|+ ..+.+-+.|+.+.+|++.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 36889999999999998875 8899999999999999999888888 57788999999987 468899999999999987
Q ss_pred CCCeeEEEe------------------------------------------------------eCCCceEEEEe-cCC-c
Q 021925 83 TGAQLFTFN------------------------------------------------------FDSPARSVDFA-VGD-K 106 (305)
Q Consensus 83 ~~~~~~~~~------------------------------------------------------~~~~v~~~~~~-~~~-~ 106 (305)
.+..+..-. ..+.+.+..+. .++ .
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 532211100 00011111111 011 1
Q ss_pred eEEEeCCcceeeeeeEEEEEeeccc----CCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC--cE
Q 021925 107 LAVITTDPFMELNSAIHVKRIARDP----ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KL 180 (305)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~ 180 (305)
.++.++ ...+.+..|++.... .....+.......|..++.++.+.+....=++|+.+..+..|++... ..
T Consensus 166 ~lllaG----yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 166 FLLLAG----YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred EEEEEe----ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 122111 123445556654421 11223445566789999999999987777778888889999998743 21
Q ss_pred eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 181 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
....+ ..-.+..|..+..-||++.+|+++.|++||||..++++++..+. |...|++++|+|+.+.+|+|+.|..
T Consensus 242 q~~~e-~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 242 QIRKE-ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred cccce-EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 11111 01234568889999999999999999999999999999999998 8899999999999999999999887
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.6e-19 Score=126.32 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=165.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCC----------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
..|.+-+++|.+++|++|..+|.|.+..+.+ ...+...++|.++|..++|.. .+|++|+. |.|+=|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEee
Confidence 3466678999999999999999999998753 224445688999999999983 36777665 9999998
Q ss_pred cCCCCe------eEEEe--------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925 81 VETGAQ------LFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (305)
Q Consensus 81 ~~~~~~------~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
.+.... +.... .-..|.+|...|..+.++.+.+ +..+..+++ +.++..+.+++|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-----D~~~y~~dl------E~G~i~r~~rGHt 156 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-----DGVIYQVDL------EDGRIQREYRGHT 156 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-----CeEEEEEEe------cCCEEEEEEcCCc
Confidence 764432 11111 2235778888887665555544 344444554 4567888999999
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccC------C-ccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG------H-KKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
+.+.++.--.....+++|++||++++||.++++.++.+..... | ...|.+++.+ ..+|++|+ ...+.+|.
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwh 233 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWH 233 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEe
Confidence 9999999866667799999999999999999999888764321 1 2345566554 55888877 44699999
Q ss_pred cCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 220 ARTLELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
+++.++...+....++..+.|..+ .+++++
T Consensus 234 Lrsse~t~vfpipa~v~~v~F~~d--~vl~~G 263 (325)
T KOG0649|consen 234 LRSSESTCVFPIPARVHLVDFVDD--CVLIGG 263 (325)
T ss_pred ccCCCceEEEecccceeEeeeecc--eEEEec
Confidence 999999999999999999999776 344444
No 172
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=2.4e-19 Score=148.47 Aligned_cols=253 Identities=17% Similarity=0.174 Sum_probs=176.5
Q ss_pred ceEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCee--eEEe----cCCCcceEEEEEcCCC--cEEEEEeCC
Q 021925 3 PILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTY----RGHNGAVWCCDVSRDS--MTLITGSAD 73 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~--~~~~----~~~~~~v~~i~~~~~~--~~l~s~~~d 73 (305)
|-..-.-..+|++++|+| +..++|.|+.+|.|.+||+..+.. ...+ ..|..++..+.|..+. .-+++++.|
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 334344567899999999 667888899999999999987664 2222 3588999999997744 449999999
Q ss_pred CcEEEEecCCCCeeE-------------EEeeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceE
Q 021925 74 QTAKLWNVETGAQLF-------------TFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESV 139 (305)
Q Consensus 74 g~v~vwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (305)
|.|..|+++.-.... .......+.+++|.+.. ..++++++.+....+......... ....+..
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~---~~~~~~~ 391 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP---EVSYKGH 391 (555)
T ss_pred CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc---ccccccc
Confidence 999999876433211 11133467788888844 445555543332221111000000 0112344
Q ss_pred EEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEE
Q 021925 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKL 217 (305)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 217 (305)
.....|.++|+.+.++|-+..++..+.|.+++||... ...++..+. .+...|++++|||-. ..++++..||.+.+
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 4667889999999999988655555559999999987 666666665 566779999999965 45788888999999
Q ss_pred EEcCCc--eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925 218 WDARTL--ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 218 wd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (305)
||+... .++.+.. .....+.+.|+++|+.|++|...|...++.+
T Consensus 469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred hhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 998754 4444444 4555678889999999999999987554444
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=160.78 Aligned_cols=240 Identities=16% Similarity=0.298 Sum_probs=179.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.|.||...|+|..|...|.++++|+.|..|+||..+++.++....+|.+.|+.++.+.+..++++++.|..|++|.+..+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 37899999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC--------CCceEEEE-------------
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--------GGESVLIL------------- 142 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~------------- 142 (305)
.++..+. +.+.|++++|+|-. .... ++...+|+........ .......+
T Consensus 265 ~pvsvLrghtgavtaiafsP~~---sss~------dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA---SSSD------DGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred chHHHHhccccceeeeccCccc---cCCC------CCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9988877 89999999999955 1111 2333333333111000 00000000
Q ss_pred ---eccCCCeeEEEEcCCCC-----------EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEE
Q 021925 143 ---KGPQGRINRAVWGPLNR-----------TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFL 207 (305)
Q Consensus 143 ---~~~~~~i~~~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 207 (305)
....-.+.+++|....- +.+++-.+-.+++|++.++...+.+. +|...+..+.++|-.. ...
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---ccccceeeeeecCCCcHhhh
Confidence 00011122222322222 33334455678899999998888777 8999999999999554 456
Q ss_pred EEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 208 TGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 208 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+++.||...|||+-.|.+++.+. ....+...+||++|..++...+.|..
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCce
Confidence 89999999999999998888776 55567788999999988887766664
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1e-19 Score=133.57 Aligned_cols=197 Identities=21% Similarity=0.299 Sum_probs=152.6
Q ss_pred cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEec
Q 021925 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNV 81 (305)
Q Consensus 7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~ 81 (305)
..+..++++..|+. +-++|.+++-|.+..|||++++. ...++-+|..+|..++|..++ ..+|++|.||.|++||+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 34677899999998 77899999999999999999863 356778899999999999855 58899999999999999
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT 160 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 160 (305)
+..+-...+-.+ .....+...++|+++. ++
T Consensus 227 R~leHSTIIYE~-------------------------------------------------p~~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 227 RSLEHSTIIYED-------------------------------------------------PSPSTPLLRLSWNKQDPNY 257 (364)
T ss_pred cccccceEEecC-------------------------------------------------CCCCCcceeeccCcCCchH
Confidence 865432221100 0113345567777755 67
Q ss_pred EEEeeCC-CcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc------eEEEEEee
Q 021925 161 IISAGED-AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL------ELIKTYVT 231 (305)
Q Consensus 161 l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~ 231 (305)
+|+-..| ..|.|.|++. ..++..++ +|.+.|+.++|.|. ...|++++.|..+.+||+.+. .++..+..
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~---~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a 334 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLR---NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA 334 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhh---cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc
Confidence 7877665 5799999986 45666776 89999999999995 467999999999999999753 23444557
Q ss_pred CCCeeEEEecC-CCCcEEEeeCCcE
Q 021925 232 ERPVNAVTMSP-LLDHVCIGEPQTI 255 (305)
Q Consensus 232 ~~~v~~~~~~~-~~~~l~~~~~~~~ 255 (305)
+..|+.+.|+| ...+++++.+...
T Consensus 335 ~~EVNqi~Ws~~~~Dwiai~~~kkl 359 (364)
T KOG0290|consen 335 GGEVNQIQWSSSQPDWIAICFGKKL 359 (364)
T ss_pred cceeeeeeecccCCCEEEEEecCee
Confidence 88899999995 5667888877664
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.4e-20 Score=148.13 Aligned_cols=214 Identities=27% Similarity=0.392 Sum_probs=157.0
Q ss_pred Cce-EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----------eeeEEecCCCcceEEEEEcCCCcEEEEE
Q 021925 2 RPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERLGTYRGHNGAVWCCDVSRDSMTLITG 70 (305)
Q Consensus 2 ~~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 70 (305)
+|+ ++++|.++|.|+++.++++++++|+-||+|+.|++... .....+.||.+.|+.+++++....|+++
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc 414 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC 414 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence 354 59999999999999999999999999999999966521 2345678999999999999988899999
Q ss_pred eCCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe----
Q 021925 71 SADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---- 143 (305)
Q Consensus 71 ~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 143 (305)
+.||+++.|+...... ..+. ......++.+.........++. ......+... ........+.
T Consensus 415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~-------~~~~~~~~~~---ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF-------RFGYTSIDDM---EVVSDLLIFESSAS 483 (577)
T ss_pred cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc-------ccccccchhh---hhhhheeeccccCC
Confidence 9999999999876665 3332 3334445555443311111110 0000000000 0000111111
Q ss_pred ---ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 144 ---GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 144 ---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
.....+..+.++|.+...+++..|+.|+++|..+++++.... .|...++++++.|+|.+|++++.|+++++|.+
T Consensus 484 ~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~---a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CcccccCccceEEecCCCCeeEecccCCceecccccccccchhee---eccceecceeecCCCceEEeecCCceeehhhc
Confidence 112457788999999999999999999999999999998887 79999999999999999999999999999999
Q ss_pred CCceEEEEE
Q 021925 221 RTLELIKTY 229 (305)
Q Consensus 221 ~~~~~~~~~ 229 (305)
....++...
T Consensus 561 d~k~~~~es 569 (577)
T KOG0642|consen 561 DVKTCVLES 569 (577)
T ss_pred cchheeecc
Confidence 877666544
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=1.4e-17 Score=134.31 Aligned_cols=239 Identities=9% Similarity=0.072 Sum_probs=157.6
Q ss_pred cccceEEEEEcCCCCEEEEee-CCCceEEEEcCC-Cee--eEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCC
Q 021925 9 HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADN-GER--LGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVET 83 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~-~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~ 83 (305)
+.+....++++|++++|++++ .++.|.+|+++. ++. +.... ..+....++|+|++++|++++. ++.|.+|++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 345677899999999987764 478999999863 332 22222 3345688999999998888765 88999999974
Q ss_pred CC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC-ceEEEEeccCCCeeEEEEcCCC
Q 021925 84 GA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 84 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.. .+..+.....+..++++|+++.++++.. ..+.+.++++......... ...... ........+.|+|++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~----~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg 186 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL----KEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC----CCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCC
Confidence 32 2222333445678889999988876653 2345666666432111100 000111 112346789999999
Q ss_pred CEEEEeeC-CCcEEEEeCCC--Cc--Eeeeecccc---CCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCce----E
Q 021925 159 RTIISAGE-DAIVRIWDTET--GK--LLKESDKET---GHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE----L 225 (305)
Q Consensus 159 ~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~----~ 225 (305)
+++++++. ++.|.+||+.. ++ .+..+.... .+......+.++|++++++++.. ++.|.+|++.... .
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 99988876 89999999973 22 233332110 11223346889999999988864 7899999985432 2
Q ss_pred EEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925 226 IKTYVTERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 226 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
+...........++++|+|++|+++...
T Consensus 267 ~~~~~~~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 267 EGHQPTETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred eEEEeccccCCceEECCCCCEEEEEEcc
Confidence 3333334456789999999999988753
No 177
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=7e-19 Score=146.08 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=153.8
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEE
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKL 78 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~v 78 (305)
+..+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+....++|+|||+.|+.++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 44567788899999999999999987654 369999998875422 222223345689999999888764 6787665
Q ss_pred E--ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 79 W--NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 79 w--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
| |+.+++..........+....|+|+++.++..++. .+...++.+.... .....+ .+.. ....|+|
T Consensus 275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~----~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDR----SGSPQVYRMSASG-----GGASLV-GGRG--YSAQISA 342 (429)
T ss_pred EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECC----CCCceEEEEECCC-----CCeEEe-cCCC--CCccCCC
Confidence 5 66666654444455667889999999987766532 1233444443211 111222 2333 4578999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--CceEEEEEe-eCC
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TLELIKTYV-TER 233 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~-~~~ 233 (305)
+|++|+..+.++ +.+||+.+++...... .. ....+.|+|+|++|+.++.+|...+|++. +++....+. ++.
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 999998887755 6669998887543222 11 23457899999999999999988888763 577777776 566
Q ss_pred CeeEEEecCCC
Q 021925 234 PVNAVTMSPLL 244 (305)
Q Consensus 234 ~v~~~~~~~~~ 244 (305)
.+...+|+|-.
T Consensus 417 ~~~~p~wsp~~ 427 (429)
T PRK01742 417 QVKFPAWSPYL 427 (429)
T ss_pred CCCCcccCCCC
Confidence 78899999853
No 178
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.5e-20 Score=146.17 Aligned_cols=225 Identities=16% Similarity=0.213 Sum_probs=190.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
.-..+.++.+|++++.|+..|.|..+|..+++....+. -...|.++.|..+..++|++-. ..+.||| ..|..++.+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehh
Confidence 35678899999999999999999999999999888887 4567999999988888887655 7899999 4588889999
Q ss_pred eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (305)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 171 (305)
....+..+.|-|..-++++++........++. .++.+..+....+.+..++-+|-+..+-+|...|+|.
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-----------~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-----------TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeec-----------hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 89999999999999999988875444333332 2344555566677888899999998999999999999
Q ss_pred EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
+|.....+++..+. .|.++|.++++.++|++++|.+.|..++|||++....+.++....+...+++|..| +||++-
T Consensus 277 lWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~ 352 (545)
T KOG1272|consen 277 LWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSY 352 (545)
T ss_pred ecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeec
Confidence 99999988888776 79999999999999999999999999999999999988888877788999999877 556555
Q ss_pred CCc
Q 021925 252 PQT 254 (305)
Q Consensus 252 ~~~ 254 (305)
++.
T Consensus 353 G~~ 355 (545)
T KOG1272|consen 353 GDH 355 (545)
T ss_pred CCe
Confidence 555
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.5e-20 Score=160.71 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=168.3
Q ss_pred ecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcC-CCcEEEEEeCCCcEEEEec
Q 021925 6 MKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~ 81 (305)
...|+++|..+.|++.+. .||+|+.||.|.|||+.+.+.-.+.. ...+.|.+++|+. ....|++++.+|...|||+
T Consensus 112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl 191 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL 191 (1049)
T ss_pred hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence 567999999999999654 99999999999999998755433332 2457899999987 4467899999999999999
Q ss_pred CCCCeeEEEeeC---CCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 82 ETGAQLFTFNFD---SPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 82 ~~~~~~~~~~~~---~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
+..+.+..+... ..+..++|+|++. .++++++. ...-.+..|+++.. ..+.+.+++|...|.++.|++.
T Consensus 192 r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d--d~~PviqlWDlR~a-----ssP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 192 RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD--DSAPVIQLWDLRFA-----SSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred cCCCcccccccCCCccceeeeeeCCCCceeeeeecCC--CCCceeEeeccccc-----CCchhhhcccccceeeeccCCC
Confidence 999888777733 3477899999764 34444331 12345667776643 3567778999999999999997
Q ss_pred C-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce
Q 021925 158 N-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 158 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 224 (305)
+ .++++++.|+.|.+|+.++++.+..+. .....+..+.|+|... .+++++.||.|.|+.+....
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGEVLGELP---AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCceEeeecC---CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7 888999999999999999999999987 5678899999999665 78899999999999987654
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.2e-18 Score=143.86 Aligned_cols=255 Identities=19% Similarity=0.262 Sum_probs=177.9
Q ss_pred CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC---cEEEEEeCCCcEEE
Q 021925 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS---MTLITGSADQTAKL 78 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~~dg~v~v 78 (305)
+|..+.|-...-..-.|++|++.++... +..|.||...+++++..+.+|..++..+.+.|.. .++++++.||.|++
T Consensus 8 ~~~~lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 8 KPALLGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred ceeeeccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 3445555444445567899999888766 5699999999999999999999999999998844 46779999999999
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecC---CceEE-EeCCccee-------------------------------------
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVG---DKLAV-ITTDPFME------------------------------------- 117 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~-~~~~~~~~------------------------------------- 117 (305)
||...+..+..+....++..+.+.|. ....+ ........
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 99999999988887776666655331 01111 11110000
Q ss_pred ------------eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeee
Q 021925 118 ------------LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKES 184 (305)
Q Consensus 118 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 184 (305)
....+..+...... ........-..|...+++.++||+++++|+|..||+|.+|.--. ...-.+.
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence 00000011100000 00000011123555689999999999999999999999996432 1222222
Q ss_pred ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 185 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
....-|...|++++|+++|.+|++|+.+|.+-+|.+.+++...--+.+++|..+.++||+.+.++...|+.....
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 222368899999999999999999999999999999999844444488999999999999998888777765433
No 181
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=6.5e-19 Score=142.11 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=172.3
Q ss_pred EEEcC---CCCEEEEeeCCCceEEEEcCCCee------eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 16 LKYNK---DGDLLFSCAKDHTPTVWFADNGER------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 16 ~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
..|++ ....||.+.+||.|.++|...... +.....|...|.++.|.|....|++++.|.++++||+++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 56655 335788899999999999765332 244567999999999999777899999999999999998887
Q ss_pred eEE---EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC---------------------CCCceEEEE
Q 021925 87 LFT---FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD---------------------QGGESVLIL 142 (305)
Q Consensus 87 ~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 142 (305)
... +.|...+.+++|.+.+..+++.+. .++.+.+|++...... ...+.+...
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg----RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGG----RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeecc----CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 655 348899999999998876666543 3566667776543310 001222334
Q ss_pred eccCCCeeE---EEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeecc-----ccCC---ccceEEEEEcCCCCEEEEEe
Q 021925 143 KGPQGRINR---AVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDK-----ETGH---KKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 143 ~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~---~~~v~~~~~~~~~~~l~~~~ 210 (305)
+.+...|.+ +.+..|...||+++. |+.|++||+++.......+. ...| ...+.++.....|.+|++.+
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 455566666 667788889999887 99999999997554332221 1122 34678888888889998888
Q ss_pred CCCeEEEEEcCCce--EEEEEeeC---CCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 211 LDKSAKLWDARTLE--LIKTYVTE---RPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 211 ~dg~i~iwd~~~~~--~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
.|++|++|++.+.. ++..+.+. .--..-..+|++.++++|+.+.....+.+.
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 89999999998643 33333311 112233578999999999999874444333
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.1e-17 Score=135.21 Aligned_cols=237 Identities=30% Similarity=0.502 Sum_probs=186.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEecCCC-cceEEEEE-cCCCc-EEEEEeC-CCcEEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHN-GAVWCCDV-SRDSM-TLITGSA-DQTAKLW 79 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~-~~v~~i~~-~~~~~-~l~s~~~-dg~v~vw 79 (305)
.+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ .+++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999998876 666776644 37777777 78777 5555455 9999999
Q ss_pred ecCC-CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 80 NVET-GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 80 d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
+... ......+. +...+..++++|++..++.+.. ....+..|+... ......+.+|...+.+++|+|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT------GKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC------CceEEeeccCCCceEEEEEcCC
Confidence 9987 55555554 7788899999999986666642 345556666543 4567777789999999999999
Q ss_pred CC-EEEEeeCCCcEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE-EEEE-eeCC
Q 021925 158 NR-TIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTER 233 (305)
Q Consensus 158 ~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-~~~~ 233 (305)
+. .+++++.|+.|++||...+.... .+. +|.... ...|+|++..+++++.|+.+++|+.+.... +..+ .+..
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecC---CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence 98 55555899999999998777776 454 566664 338999998899999999999999987664 4444 3678
Q ss_pred CeeEEEecCCCCcEEEeeCCcE
Q 021925 234 PVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.+.++.|+|++..+++++.++.
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCc
Confidence 9999999998888888777743
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.4e-18 Score=142.67 Aligned_cols=250 Identities=17% Similarity=0.204 Sum_probs=167.8
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.|...+++.++||+++++|+|..||.|.+|.--. ......++-|..+|.+++|+++|.+|+||+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 5777799999999999999999999999995221 123456777999999999999999999999999999999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---CCCCceE--EEEeccCCCeeEEEEcCCC
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---DQGGESV--LILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~i~~~~~~~~~ 158 (305)
++...--+..+++..+.++|++...+.... ++.+.+........ ....++. ..-....+-.+.++++|.-
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~-----DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLE-----DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEec-----CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 996555569999999999999987776654 22222222111000 0000000 0011223445566777766
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeecc----------------------------------------------------
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDK---------------------------------------------------- 186 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------------------------------------- 186 (305)
+.++..+..|.|.+||+.+.+.+..+..
T Consensus 358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 6666667777777777765443332211
Q ss_pred -------------ccCCccceEEEEEcC-CCC-EEEEEeCCCeEEEEEcCC------ce----EEEEE-eeCCCeeEEEe
Q 021925 187 -------------ETGHKKTITSLAKAA-DGS-HFLTGSLDKSAKLWDART------LE----LIKTY-VTERPVNAVTM 240 (305)
Q Consensus 187 -------------~~~~~~~v~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~------~~----~~~~~-~~~~~v~~~~~ 240 (305)
..+|...+...++.+ ... ..++++.||.+++|-+.+ .. +...- .+..++++++|
T Consensus 438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 123555444444433 333 789999999999998732 21 11111 16889999999
Q ss_pred cCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 241 SPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+.||..|+++.++. +.+|+...
T Consensus 518 s~dGslla~s~~~~------Itiwd~~~ 539 (792)
T KOG1963|consen 518 SQDGSLLAVSFDDT------ITIWDYDT 539 (792)
T ss_pred cCCCcEEEEecCCE------EEEecCCC
Confidence 99998888776665 55565544
No 184
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=144.07 Aligned_cols=220 Identities=20% Similarity=0.268 Sum_probs=159.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcC--CCcEEEEEeCCCcEEEEec
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~ 81 (305)
.|+||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|.| +.+.+++|..|..|+++|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 588999999999999999999999999999999998888877765 7999999999999 5568899999999999998
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT 160 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 160 (305)
...+.-.. .....+.......|...|..++..|++ ..
T Consensus 125 ~~~~~~~~------------------------------------------d~~~~~~~~~~~cht~rVKria~~p~~Pht 162 (758)
T KOG1310|consen 125 DSSKEGGM------------------------------------------DHGMEETTRCWSCHTDRVKRIATAPNGPHT 162 (758)
T ss_pred cccccccc------------------------------------------ccCccchhhhhhhhhhhhhheecCCCCCce
Confidence 75332110 001123455567888999999999998 78
Q ss_pred EEEeeCCCcEEEEeCCCCcEee-------eeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc--------e
Q 021925 161 IISAGEDAIVRIWDTETGKLLK-------ESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL--------E 224 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------~ 224 (305)
+.++++||+|+-+|++...... .+.......-...++..+|. ..+|++|+.|-..++||.+.. .
T Consensus 163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~ 242 (758)
T KOG1310|consen 163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT 242 (758)
T ss_pred EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence 8899999999999998632211 11111122245678899995 457899999999999994321 1
Q ss_pred ----------EEEEEe--eC-----------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 225 ----------LIKTYV--TE-----------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 225 ----------~~~~~~--~~-----------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
++.-+. |- ..++-+.|+|+|.-|++.-+... ++++++..+..
T Consensus 243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEh-----VYlfdvn~~~~ 307 (758)
T KOG1310|consen 243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEH-----VYLFDVNEDKS 307 (758)
T ss_pred ccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeE-----EEEEeecCCCC
Confidence 122221 10 11466789999988777655444 55555544443
No 185
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=6.2e-17 Score=120.51 Aligned_cols=237 Identities=12% Similarity=0.151 Sum_probs=163.8
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCC------CcEEEEecCCC
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSAD------QTAKLWNVETG 84 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d------g~v~vwd~~~~ 84 (305)
....++|+.|...++.|..+| .+||+.+--+...+.+.+.+.+.-+...-..++|+ +||.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999998887665 69998876443333222333322222222334554 34333 56999998888
Q ss_pred CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--CCCeeEEEEcCCCCEEE
Q 021925 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWGPLNRTII 162 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~ 162 (305)
+++.++....+|.++.+.++.-.++.. ..+.++...... +.++.+... .....+++-+.+...||
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~-----k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNP-----KLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEec--------CeEEEEEcCCCh-----hheeeeecccCCCceEeecCCCCceEEE
Confidence 899999999999999998876555442 334444443221 222222221 12233333333344555
Q ss_pred Ee-eCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceEEEEEe---eCCCe
Q 021925 163 SA-GEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYV---TERPV 235 (305)
Q Consensus 163 ~~-~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~---~~~~v 235 (305)
.- -.-|.|+|-|+...+. ...+. +|...|.+++.+.+|..+||+|..|+ |||||..+|+.+.+++ ....|
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~---AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIIN---AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEE---cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 43 3469999999987655 24444 79999999999999999999999998 8999999999999998 45679
Q ss_pred eEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 236 NAVTMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
.+++|||+..+|+++++.+...+..++.-.
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999999997777666543
No 186
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=4.7e-17 Score=134.92 Aligned_cols=225 Identities=13% Similarity=0.062 Sum_probs=151.9
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeC---CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCC--cE
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQ--TA 76 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg--~v 76 (305)
+..+..+...+.+.+|+|||+.|+..+. +..+++|++.+++... +....+.+..++|+|||+.|+.. +.+| .|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 3445566778999999999999887542 4579999998876433 22233445678999999988754 4455 58
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
.+||+++++..........+....|+|+++.++..++.. +...++.+... .+ ....+...........|+|
T Consensus 270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g~~~Iy~~d~~----~g-~~~~lt~~~~~~~~~~~Sp 340 (429)
T PRK03629 270 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----GRPQVYKVNIN----GG-APQRITWEGSQNQDADVSS 340 (429)
T ss_pred EEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC----CCceEEEEECC----CC-CeEEeecCCCCccCEEECC
Confidence 889998887665555556778899999999887766432 12233333211 11 2223333444556789999
Q ss_pred CCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe---EEEEEcCCceEEEEEe
Q 021925 157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS---AKLWDARTLELIKTYV 230 (305)
Q Consensus 157 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~ 230 (305)
+|++|+..+.+ ..|.+||+.+++.. .+.. . .......|+|||+.|+.++.++. +.++++. ++....+.
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~ 414 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP 414 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence 99998876543 35889999887643 3331 1 12345789999999999887764 6777774 54445554
Q ss_pred -eCCCeeEEEecCC
Q 021925 231 -TERPVNAVTMSPL 243 (305)
Q Consensus 231 -~~~~v~~~~~~~~ 243 (305)
++..+...+|+|-
T Consensus 415 ~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 415 ATDGQVKFPAWSPY 428 (429)
T ss_pred cCCCCcCCcccCCC
Confidence 5677888999874
No 187
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=2.9e-18 Score=126.41 Aligned_cols=214 Identities=19% Similarity=0.294 Sum_probs=158.1
Q ss_pred cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC---CcEEEEEeCCCcEEEEecC
Q 021925 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~v~vwd~~ 82 (305)
.+|+-.|.++.|-| |.-.+.+++.|.++++||..+.+....++ .++.|.+-+++|= .-++|+|..|-.|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 66688899999999999999998888887 6788999999982 3467788889999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---------CCCCceEEEEeccCCCeeEE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---------DQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~ 152 (305)
+|...+.+. +...|.++.|+|...+++..+. .++.+++|++.+... ....+....-..|.+.++.+
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgs----aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGS----ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecC----CCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 999999998 8999999999999888776653 367788888876521 11122223345788999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc------ceEE-----EEEcCC--CCEEEEEeCCCeEEEEE
Q 021925 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK------TITS-----LAKAAD--GSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~v~~-----~~~~~~--~~~l~~~~~dg~i~iwd 219 (305)
+|..++.++++++.|..+++|+..+|+....-.....|+. .+.+ +.+-|. +-.|++..+-..|+.|+
T Consensus 253 a~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~ 332 (397)
T KOG4283|consen 253 AWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS 332 (397)
T ss_pred eecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeee
Confidence 9999999999999999999999987753211110001110 0111 122232 23455666677899999
Q ss_pred cCCceEE
Q 021925 220 ARTLELI 226 (305)
Q Consensus 220 ~~~~~~~ 226 (305)
.. ++.+
T Consensus 333 ~h-~k~i 338 (397)
T KOG4283|consen 333 TH-LKRI 338 (397)
T ss_pred cc-ccee
Confidence 87 4433
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.4e-17 Score=138.42 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=143.7
Q ss_pred CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCce
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL 107 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 107 (305)
+..|++||..... ...+..|...+.+++|+|||+.|+.++.+ ..|.+||+++++..............+|+|+++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4689999976444 55677788899999999999999887653 3699999988865444334455667899999998
Q ss_pred EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCC-cEeeeec
Q 021925 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETG-KLLKESD 185 (305)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~ 185 (305)
++.+... .+...++.+... ......+..+...+....|+|+|+.|+..+ .+|...||++... .....+.
T Consensus 262 La~~~~~----~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 262 LAFASSK----DGVLNIYVMGAN-----GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG 332 (429)
T ss_pred EEEEEec----CCcEEEEEEECC-----CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec
Confidence 8775421 122233333211 122445566677788999999999877655 5788888876532 2222221
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+.. ....|+|||+.|+..+.++ +.+||+.+++....... ....+++|+|+|++|+.++.++..
T Consensus 333 ----~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 333 ----GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred ----CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCc
Confidence 222 3578999999998887765 66699998865432222 234678899999999999877764
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=9.2e-19 Score=142.38 Aligned_cols=209 Identities=16% Similarity=0.217 Sum_probs=148.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+|+||++.|++++|+.||+.+|+|+.|+.|.+|+.. .+-+..+. |.+.|.|+.|+|-...|++++.+ ..-+|..+ .
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS-H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~-q 123 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS-HNDAIQCMSFNPITHQLASCSLS-DFGLWSPE-Q 123 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec-cCCeeeEeecCchHHHhhhcchh-hccccChh-h
Confidence 578999999999999999999999999999999743 23333444 99999999999988899998874 57899865 3
Q ss_pred CeeEEEeeCCCceEEEEecCCceEEEeCCc-ceeeeeeE---------------EEEEeecccCCCC-------------
Q 021925 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDP-FMELNSAI---------------HVKRIARDPADQG------------- 135 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~------------- 135 (305)
+.+...+....+.+++|..+|.+++.+..+ .+.+.+.. .+|.+...+....
T Consensus 124 K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q 203 (1081)
T KOG1538|consen 124 KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ 203 (1081)
T ss_pred hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence 445556677788999999999999987642 12111110 0111111111000
Q ss_pred --------CceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE
Q 021925 136 --------GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 207 (305)
Q Consensus 136 --------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 207 (305)
++.+..-+.-.-...|+.+.|+|.+++.|+.|+.+++|.. .|-.+.++. .....|+.++..|+++.++
T Consensus 204 TLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg---~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 204 TLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG---EQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred eeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc---ccceeEEEEEEccCCceEE
Confidence 0000001111223456677778888888888888888874 465666665 4677999999999999999
Q ss_pred EEeCCCeEEEEEcC
Q 021925 208 TGSLDKSAKLWDAR 221 (305)
Q Consensus 208 ~~~~dg~i~iwd~~ 221 (305)
.|+.||+|.-|++.
T Consensus 280 ~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 280 VGCQDGTIACYNLI 293 (1081)
T ss_pred EEEccCeeehhhhH
Confidence 99999999999864
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8.9e-18 Score=128.56 Aligned_cols=248 Identities=13% Similarity=0.177 Sum_probs=179.4
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC------CeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------GERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+++.... .|.+.|.|++|.....++.+|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 679999999999999999999999999999999763 34554443 36689999999998889999999999999
Q ss_pred EecCCCCeeEEEeeCC---CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 79 WNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
.|+++.+.+..+.+.. .|..+..+|-.+.+++.++ .+.+.+|+....+.. . ....+.........+.|+
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-----~~~V~~~D~Rd~~~~--~-~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-----AKLVSFIDNRDRQNP--I-SLVLPANSGKNFYTAEFH 203 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEec-----CceEEEEeccCCCCC--C-ceeeecCCCccceeeeec
Confidence 9999999998888555 8999999998888887766 344555555433211 1 122233445567788999
Q ss_pred CCC-CEEEEeeCCCcEEEEeCCCCcE-eeeecccc---CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-EEEEE
Q 021925 156 PLN-RTIISAGEDAIVRIWDTETGKL-LKESDKET---GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTY 229 (305)
Q Consensus 156 ~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 229 (305)
|.. .+|++.+..+-+-+||++..+. +....... .....-.++.|+|+|+.|++--....-.+||+.+.+ .+..+
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 976 5777888889999999986432 21111111 112233567899999998887777677788887743 34444
Q ss_pred eeC-------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 230 VTE-------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 230 ~~~-------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
.|. ..+.+++|..+.. +++|+++=. +++|.+.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-----i~~WklP 322 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-----IHIWKLP 322 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccc-----eEEEecC
Confidence 432 2466778877755 777776655 6666554
No 191
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=9.2e-17 Score=133.76 Aligned_cols=224 Identities=18% Similarity=0.116 Sum_probs=149.5
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCC--cE
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA 76 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg--~v 76 (305)
+..+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++.. .+..+.+...++.|+|||+.|+ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 45566778889999999999999987643 46999999877653 3334455566889999998775 445555 59
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
.+||+.+++..............+|+|+++.++..++.. +...++.+... .++ ...+..+.......+|+|
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g~~~iy~~dl~----~g~-~~~lt~~g~~~~~~~~Sp 345 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----GRPQIYRVAAS----GGS-AERLTFQGNYNARASVSP 345 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECC----CCC-eEEeecCCCCccCEEECC
Confidence 999998887654434444556789999999888776422 11223322211 111 222222333445689999
Q ss_pred CCCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEe
Q 021925 157 LNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV 230 (305)
Q Consensus 157 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 230 (305)
+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.+.++++.. .....+.
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~ 419 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLV 419 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcc
Confidence 999998765433 6999999887654 333 22234457899999988776653 4588888854 4444444
Q ss_pred -eCCCeeEEEecC
Q 021925 231 -TERPVNAVTMSP 242 (305)
Q Consensus 231 -~~~~v~~~~~~~ 242 (305)
+...+...+|+|
T Consensus 420 ~~~g~~~~p~wsp 432 (433)
T PRK04922 420 SADGEVREPAWSP 432 (433)
T ss_pred cCCCCCCCCccCC
Confidence 455677788887
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=1.2e-15 Score=127.37 Aligned_cols=238 Identities=30% Similarity=0.475 Sum_probs=176.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|...|.+++|+|+++.+++++. |+.+++|+..++..+..+.+|...|.+++|+|++. .+++++.|+.+++||..
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 47789999999999999998888885 99999999998888899999999999999999987 55555899999999988
Q ss_pred CCCeeE-EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 83 TGAQLF-TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 83 ~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
.+.... .+. +.... ...|++++..++.+.. ...+.+++...... ......+|...+.++.|+|++..
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 230 TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS-----DGTIRLWDLRSSSS-----LLRTLSGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred CCcEEeeecCCCCcce-eEeECCCCCEEEEecC-----CCcEEEeeecCCCc-----EEEEEecCCccEEEEEECCCCCE
Confidence 777766 344 33333 2378998866664443 55566666653321 23333678899999999998888
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEeeCCCeeEEE
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 239 (305)
+++++.|+.+.+||..+........ ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS 377 (466)
T ss_pred EEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEE
Confidence 8888889999999998876655543 22466678999994332455555 688999999998887333333333388999
Q ss_pred ecCCCCcEEE-eeCCcE
Q 021925 240 MSPLLDHVCI-GEPQTI 255 (305)
Q Consensus 240 ~~~~~~~l~~-~~~~~~ 255 (305)
+.+ ...+.. +..++.
T Consensus 378 ~~~-~~~~~~~~~~~~~ 393 (466)
T COG2319 378 FSP-DGRVVSSGSTDGT 393 (466)
T ss_pred ECC-CCCEEEEecCCCc
Confidence 999 633333 344444
No 193
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.6e-16 Score=132.52 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=152.5
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeC---CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCc--E
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A 76 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~--v 76 (305)
+..+..|.+.+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+...+|+|||+.|+ +.+.++. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3456778889999999999999888764 468999999887653 4555677788999999998775 5555555 7
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
.+||+++++...............|+|+++.++..++... ...++.+.. .+.....+..+...+....|+|
T Consensus 273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~-----~g~~~~~lt~~~~~~~~~~~Sp 343 (435)
T PRK05137 273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----SPQLYVMNA-----DGSNPRRISFGGGRYSTPVWSP 343 (435)
T ss_pred EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----CCeEEEEEC-----CCCCeEEeecCCCcccCeEECC
Confidence 7779888766544445556678999999998887654211 112222221 1122333333455567789999
Q ss_pred CCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC------CeEEEEEcCCceEEE
Q 021925 157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDARTLELIK 227 (305)
Q Consensus 157 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~ 227 (305)
+|+.|+..+.+ ..|.+||+..+. .+.+. ....+....|+|||+.|+..+.+ ..++++|+..++. .
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~ 417 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-R 417 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCc-eEecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-E
Confidence 99999876653 368889986544 33333 22246678999999998765543 3688888876554 3
Q ss_pred EEeeCCCeeEEEecCC
Q 021925 228 TYVTERPVNAVTMSPL 243 (305)
Q Consensus 228 ~~~~~~~v~~~~~~~~ 243 (305)
.+.....+...+|+|-
T Consensus 418 ~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 418 EVPTPGDASDPAWSPL 433 (435)
T ss_pred EccCCCCccCcccCCC
Confidence 4444445677788774
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2e-18 Score=139.62 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=143.0
Q ss_pred ccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEe
Q 021925 10 ERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN 80 (305)
Q Consensus 10 ~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd 80 (305)
...|+++.|.| |...||.++.||.|++|.+..+ .+...+..|.+.|+++.|+| -...|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45699999999 7789999999999999988753 35567888999999999999 456899999999999999
Q ss_pred cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
+.+++... .+.+|.+.|..++|||+|+.
T Consensus 707 l~~~~~~~----------------------------------------------------~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 707 LANAKLYS----------------------------------------------------RLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred hhhhhhhh----------------------------------------------------eeccCcCceeEEEECCCCcc
Confidence 98765432 35789999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCc--eEEEEEe--e
Q 021925 161 IISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTL--ELIKTYV--T 231 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~--~~~~~~~--~ 231 (305)
+++.+.||+|++|+.+++.. ++.-... ....--.+.|.-+|+++++.+.|. .|.+||..+. .++.+.. .
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc
Confidence 99999999999999987643 3222211 123344577888999988877654 5889988754 3444433 2
Q ss_pred CCCeeEEEecCCCCcEEEee-CCcE
Q 021925 232 ERPVNAVTMSPLLDHVCIGE-PQTI 255 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~-~~~~ 255 (305)
...+.--.+.+|...|+..+ +|..
T Consensus 813 aps~LvP~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 813 APSPLVPHYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred cCccccccccCCCceEEEecCCCce
Confidence 22222334566766655544 4444
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=1.7e-17 Score=122.03 Aligned_cols=203 Identities=19% Similarity=0.257 Sum_probs=151.6
Q ss_pred ccccceEEEEEcCCCC-----EEEEeeCCCceEEEEcCCCe--e--eEE-----ecCCCcceEEEEEcC-CCcEEEEEeC
Q 021925 8 GHERPLTYLKYNKDGD-----LLFSCAKDHTPTVWFADNGE--R--LGT-----YRGHNGAVWCCDVSR-DSMTLITGSA 72 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~-----~l~s~~~dg~v~iw~~~~~~--~--~~~-----~~~~~~~v~~i~~~~-~~~~l~s~~~ 72 (305)
.|.-+++.+.|.|+.. +|||++ ..+|+|.+...+ . ... -..+..++++..|+. +.++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 6888999999999763 455543 489999876322 1 111 124668999999998 7789999999
Q ss_pred CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925 73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (305)
|-+..|||++++.. +.....+-.|+..|..+
T Consensus 172 DTTCTiWdie~~~~-------------------------------------------------~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS-------------------------------------------------GTVKTQLIAHDKEVYDI 202 (364)
T ss_pred cCeEEEEEEeeccc-------------------------------------------------cceeeEEEecCcceeEE
Confidence 99999999997621 01122356788999999
Q ss_pred EEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCC-CeEEEEEcCCc-eEEEE
Q 021925 153 VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLD-KSAKLWDARTL-ELIKT 228 (305)
Q Consensus 153 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~iwd~~~~-~~~~~ 228 (305)
+|...+ +.+|+.+.||.+|++|++..+....+.+......+...++|++ |-+++|+-..| ..|.|.|++.. .++..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999866 6889999999999999998766555554444467888999998 45678876665 46999999864 66777
Q ss_pred Ee-eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEe
Q 021925 229 YV-TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLV 261 (305)
Q Consensus 229 ~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~ 261 (305)
++ |...|+.++|.|... .|++|++|.....+.+
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence 77 999999999999765 5777777766443333
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.79 E-value=1e-16 Score=117.87 Aligned_cols=156 Identities=19% Similarity=0.339 Sum_probs=112.2
Q ss_pred EEEEEcCCCCEEEEeeC----------CCceEEEEcCC-CeeeEEecC-CCcceEEEEEcCCCcEEEEE--eCCCcEEEE
Q 021925 14 TYLKYNKDGDLLFSCAK----------DHTPTVWFADN-GERLGTYRG-HNGAVWCCDVSRDSMTLITG--SADQTAKLW 79 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~----------dg~v~iw~~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~--~~dg~v~vw 79 (305)
..+.|+|+|++|+.-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 36889999998775433 13455665532 233444432 34579999999999887554 457899999
Q ss_pred ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
|++ ++.+..+ +...++.+.|+|+|+
T Consensus 89 d~~-~~~i~~~------------------------------------------------------~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 89 DVK-GKKIFSF------------------------------------------------------GTQPRNTISWSPDGR 113 (194)
T ss_pred cCc-ccEeEee------------------------------------------------------cCCCceEEEECCCCC
Confidence 985 3333222 234566799999999
Q ss_pred EEEEeeC---CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceEEEEEe
Q 021925 160 TIISAGE---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 160 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~ 230 (305)
++++++. .|.|.+||.++.+.+.... |. .++.++|+|+|++|++++. |+.++||+.. |+.+....
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE----HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc----cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9998874 4779999999888887764 33 4789999999999998875 7889999985 66665543
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=8.8e-17 Score=120.45 Aligned_cols=249 Identities=16% Similarity=0.228 Sum_probs=175.6
Q ss_pred cceEEEEEcCCCCEEEE-eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeE
Q 021925 11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~ 88 (305)
+.|.-+.|..|..+++. ...|+.|.+|++...+-...+.....++.+++|+|||+.| .+...|-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 44667788887766554 4678899999999999888898888999999999999655 455669999999999887776
Q ss_pred EEeeCCCceEEEEecCCceEEEeCCcce----ee-------------eeeEEEEEeecccCCCCCceEEE----------
Q 021925 89 TFNFDSPARSVDFAVGDKLAVITTDPFM----EL-------------NSAIHVKRIARDPADQGGESVLI---------- 141 (305)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (305)
.-..+..+..++|+|++++.++.+.... .+ ...+....+...+ .+..+..
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP---dg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP---DGNWLAVWDNVLEYKVY 205 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC---CCcEEEEecchhhheee
Confidence 6667777899999999999998765200 00 0011111111111 1111111
Q ss_pred EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc-----------------------------------
Q 021925 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----------------------------------- 186 (305)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------------- 186 (305)
.....-.+..+.|+|.+++|+.|+.|+.+++.+--+.+....+-.
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 111234678899999999999999999999876544332211100
Q ss_pred ----------------------------ccCCccceEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceEEEEEeeCCCee
Q 021925 187 ----------------------------ETGHKKTITSLAKAADGSHFLTGSL--DKSAKLWDARTLELIKTYVTERPVN 236 (305)
Q Consensus 187 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~v~ 236 (305)
.......+..++|++|..++++-.. -+.+.+||++..+....+....+|.
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 0112345778999999999888764 3679999999888877777888999
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
...|+|....|+++.+... ++.|...
T Consensus 366 af~WdP~~prL~vctg~sr-----LY~W~ps 391 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSR-----LYFWAPS 391 (447)
T ss_pred EEEeCCCCceEEEEcCCce-----EEEEcCC
Confidence 9999999998888866554 5555443
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.1e-17 Score=127.27 Aligned_cols=198 Identities=18% Similarity=0.170 Sum_probs=141.9
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC
Q 021925 56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134 (305)
Q Consensus 56 ~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (305)
..++|+++|..+++++.||++|||+..+...+... .+...|.++.|+|+++.++..+.+ ...+|+........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD------SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC------ceEEEEeccCchhh
Confidence 67899999999999999999999997766655444 489999999999999999988764 34455544321111
Q ss_pred CCceEEEEeccCCCeeEEEEcCCC---CEE--EEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEE
Q 021925 135 GGESVLILKGPQGRINRAVWGPLN---RTI--ISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFL 207 (305)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l--~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 207 (305)
...+ ...+.....+.|+.++ .+. +....-+.|+.||+...+- .-...........|++++.+++|++++
T Consensus 222 ~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 222 RKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred hcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 1010 1223345556777666 222 2333456777777654322 111111113456899999999999999
Q ss_pred EEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 208 TGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 208 ~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
.|+.||.|.|++..+.+.++-.+ |...|+.+.|+|+.++++.-+.+....+..+.+
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999988877 888999999999999999877776655555544
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.4e-16 Score=128.76 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=146.5
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLW 79 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vw 79 (305)
..+..+.+.+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455778889999999999999887643 359999998887543 333445667899999998886 56778877776
Q ss_pred e--cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 80 N--VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 80 d--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
. +.++................|+|+++.++..++.. +...++.+... .+. ...+..........+|+|+
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~----~g~-~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPAS----GGA-AQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECC----CCc-eEEEecCCCCcCceEECCC
Confidence 5 44444322222344556789999999887765421 12233433211 111 1222222233446789999
Q ss_pred CCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEe-
Q 021925 158 NRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV- 230 (305)
Q Consensus 158 ~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~- 230 (305)
|++|+..+.++ .|.+||+.+++... +. .........|+|||+.|+.++.++ .+.+.++ +++....+.
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~ 412 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTA-LT----DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV 412 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEE-cc----CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeec
Confidence 99998777654 69999998876543 32 112335679999999988777544 3666666 455555554
Q ss_pred eCCCeeEEEecCC
Q 021925 231 TERPVNAVTMSPL 243 (305)
Q Consensus 231 ~~~~v~~~~~~~~ 243 (305)
....+...+|+|-
T Consensus 413 ~~g~~~~p~wsp~ 425 (427)
T PRK02889 413 QGGDVREPSWGPF 425 (427)
T ss_pred CCCCCCCCccCCC
Confidence 4566788888874
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.7e-16 Score=135.35 Aligned_cols=248 Identities=17% Similarity=0.202 Sum_probs=170.0
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC---CcceEEEEEcC--CCcEEEEEeCCCcEEEEec
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDVSR--DSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~ 81 (305)
.+..++-..+.|+|-...++++...-.|++||.+.++.+..+..+ ...|+.+.+.. |..++++|+.||.|+||+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344456778899998889999987889999999999988877644 35799999876 5568999999999999963
Q ss_pred -C----CCCeeEEEe--------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925 82 -E----TGAQLFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (305)
Q Consensus 82 -~----~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (305)
. +.+.+..+. ..+.-.-+.|......++++++ ...+++|+..... .......+....
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~-----~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQ-----VVADIPYGSSTL 1210 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccce-----eEeecccCCCcc
Confidence 2 223333322 1111234556665555555554 4566777765422 112222334556
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccc--eEEEEEcCCCCE-EEEEeCCCeEEEEEcCCce
Q 021925 149 INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSH-FLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 149 i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~ 224 (305)
++++.-+. .|+.+++|..||.|++||.+...+-..+.....|... |..+.+.++|-- |++|+.||.|++||++...
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 67766554 3689999999999999999875442222222256665 999999987654 9999999999999999742
Q ss_pred EEEE--Ee----eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925 225 LIKT--YV----TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 225 ~~~~--~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
.... +. .++..+++..+++.+.+|+|+... +++|++..+.
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~------ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQL------IKIYSLSGEQ 1336 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCcce------EEEEecChhh
Confidence 2221 11 245699999999999999998833 5556554443
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=131.89 Aligned_cols=196 Identities=17% Similarity=0.170 Sum_probs=140.1
Q ss_pred CCCCEEEEeeCCCceEEEEcCCCeeeEEec----CCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCeeEEEeeCC
Q 021925 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 94 (305)
|++--++.|-.-|.|.+.|....+..+.+. -.+..|+++.|-|. ...++.+-.+|.+.++|.+- ....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGA 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccC
Confidence 455567777778888888866532222121 13478999999994 45666777899999998721 1111
Q ss_pred CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q 021925 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (305)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 174 (305)
...+....+++..+.+...... ....++..+.--.+.|...+|+|||++||+.++||.++|+|
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk-----------------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~ 318 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK-----------------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD 318 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc-----------------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence 1112222233333333221000 01134444555566899999999999999999999999999
Q ss_pred CCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 242 (305)
..+.+.+..++ ..-+...|++|+|||++|++|++|.-|.||.+...+.+..-. |.+.|+.|+|.|
T Consensus 319 fdt~eLlg~mk---SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 319 FDTQELLGVMK---SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccHHHHHHHHH---hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99888776665 456789999999999999999999999999999999998877 999999999995
No 202
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.76 E-value=1e-16 Score=117.88 Aligned_cols=159 Identities=13% Similarity=0.215 Sum_probs=111.5
Q ss_pred eEEEEecCCceEEEeCCc-----ceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEcCCCCEEEEe--eCCC
Q 021925 97 RSVDFAVGDKLAVITTDP-----FMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISA--GEDA 168 (305)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg 168 (305)
..+.|++.|..+++.... .....+...++.+.. ...+...+.- ..++|.+++|+|+++.+++. ..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~-----~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE-----KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec-----CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 467788888877776541 112223334444422 1223333332 34579999999999987654 4678
Q ss_pred cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 245 (305)
.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||.++.+.+....+.. +..++|+|+|+
T Consensus 84 ~v~lyd~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr 156 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGR 156 (194)
T ss_pred ccEEEcCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCC
Confidence 99999997 66666663 457788999999999999875 4679999999999998887665 68999999999
Q ss_pred cEEEeeCC-cEEEEEEeehhhhh
Q 021925 246 HVCIGEPQ-TIKFMLLVYLFVLF 267 (305)
Q Consensus 246 ~l~~~~~~-~~~~~~~~~~~~~~ 267 (305)
++++++.. .......+++|+..
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEEeccceeccccEEEEEec
Confidence 99998653 33333446666654
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.6e-16 Score=135.51 Aligned_cols=235 Identities=13% Similarity=0.201 Sum_probs=164.6
Q ss_pred cceEEEEEcC--CCCEEEEeeCCCceEEEEcC-C----CeeeEEec---C----CCcceEEEEEcCCCcEEEEEeCCCcE
Q 021925 11 RPLTYLKYNK--DGDLLFSCAKDHTPTVWFAD-N----GERLGTYR---G----HNGAVWCCDVSRDSMTLITGSADQTA 76 (305)
Q Consensus 11 ~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~-~----~~~~~~~~---~----~~~~v~~i~~~~~~~~l~s~~~dg~v 76 (305)
..|+.+.+-. |..++++|+.||.|+||+-- + .+.+.... + -.+.=.-++|.....+|+++|.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4578888755 45689999999999999532 2 22332222 1 11222456787766677777777899
Q ss_pred EEEecCCCCeeEEEeeCC--CceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC--eeE
Q 021925 77 KLWNVETGAQLFTFNFDS--PARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INR 151 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~--~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~ 151 (305)
+|||......+..+.... .++++.-.- .++.++++.. ++.+++++.+..... ..+...+.|... |..
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa-----DGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA-----DGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeec-----CCceEEeecccCCcc---ccceeecccCCccccee
Confidence 999999988888877443 444444332 3566666654 666777776654332 466777888877 999
Q ss_pred EEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCC---ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 152 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
+.+.++| ..|++|+.||.|++||++... ...+.....| .+..+++..+++...+|+|+. +.|+||++. |+.+.
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLN 1338 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhc
Confidence 9999877 469999999999999999752 2222111122 235999999999999999998 999999986 44444
Q ss_pred EEe--------eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 228 TYV--------TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 228 ~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
.++ ....+.|++|+|..-++++|+.|...
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 443 22457999999999899999777764
No 204
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.1e-15 Score=126.98 Aligned_cols=210 Identities=13% Similarity=0.100 Sum_probs=139.3
Q ss_pred CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (305)
Q Consensus 32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 108 (305)
..|.++|. ++.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.......+.......|+|+++.+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 35667775 355555566678889999999999999877643 35999999988765544456667789999999887
Q ss_pred EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeC--CCCcEeeeec
Q 021925 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDT--ETGKLLKESD 185 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~ 185 (305)
+..... .+...++.+... ......+..+........|+|||+.|+..+. +|...+|.+ .+++......
T Consensus 255 a~~~~~----~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 255 AVALSR----DGNSQIYTVNAD-----GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred EEEEcc----CCCceEEEEECC-----CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence 754321 122334433221 1123344445555677899999998886654 455566654 4444322221
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
........+|+|||++|+..+.++ .|++||+.+++... +..........|+|+|+.|+.++.++..
T Consensus 326 ----~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 326 ----TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred ----CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCC
Confidence 122334578999999998777654 69999998876543 3333345778999999999888765543
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.7e-15 Score=115.09 Aligned_cols=194 Identities=11% Similarity=0.172 Sum_probs=145.6
Q ss_pred eEEEEEcCCCCEEEEeeCC--CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 13 LTYLKYNKDGDLLFSCAKD--HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
|--+-|+. .++|..+.+ ..+++.+...+..+..+. ...+|.++.++.+ +|+++-.+ .|.|||+++.+.+.++
T Consensus 49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhh
Confidence 33444543 345554443 358888888777777766 5678999999644 67766664 5999999999999988
Q ss_pred ee--CCC--ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 91 NF--DSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 91 ~~--~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
.. +.+ +..+.+++.+.+++.-+... .+.+.+++.. ..+++..+..|++.+.+++|+++|.+||++++
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t---~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTT---SGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASE 193 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCC---CceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEecc
Confidence 72 233 34444444555776654322 4556666654 34677888999999999999999999999999
Q ss_pred CCc-EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 167 DAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 167 dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
.|+ ||++.+.+|+.+.+++... ....|.+++|+|++++|++.|..++|.++.++.
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 886 7899999999999997432 256789999999999999999999999998764
No 206
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=1.6e-16 Score=116.98 Aligned_cols=202 Identities=16% Similarity=0.225 Sum_probs=157.1
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee-eEEec-----CCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYR-----GHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~-~~~~~-----~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw 79 (305)
.|-+.|.|+.|.|++..+++-. |..|.+|+++++.. +..+. +|....++-+|+| +++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4556899999999999998766 88999999987655 33332 3566788889999 78888775 46899999
Q ss_pred ecCCCCeeEEEe--eCCCceEEEEecCCceEEE-eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 80 NVETGAQLFTFN--FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 80 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
|+++.++...+. +...++.+.|+|+...+++ +++ ++.+++|+.+. ...++..+.+|...+.++.|+|
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD-----dgyvriWD~R~-----tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGD-----DGYVRIWDTRK-----TKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCC-----CccEEEEeccC-----CCccccccCCCceEEEEEEecC
Confidence 999998888887 7888999999998765554 444 66788888874 3467888999999999999999
Q ss_pred CC-CEEEEeeCCCcEEEEeCCCCcE------------------------e--eeeccccCCccceEEEEEcCCCC-EEEE
Q 021925 157 LN-RTIISAGEDAIVRIWDTETGKL------------------------L--KESDKETGHKKTITSLAKAADGS-HFLT 208 (305)
Q Consensus 157 ~~-~~l~~~~~dg~i~iwd~~~~~~------------------------~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 208 (305)
.. +++++|+.|..|.+|....-.. + ..+.....|+..|.+++|+.-.. .+|+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 75 6778999999999997643110 0 01112336889999999998555 4788
Q ss_pred EeCCCeEEEEEcC
Q 021925 209 GSLDKSAKLWDAR 221 (305)
Q Consensus 209 ~~~dg~i~iwd~~ 221 (305)
-+.||++.|=.+.
T Consensus 349 LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGRVIISSVP 361 (370)
T ss_pred eccCceEEeecCC
Confidence 9999999886654
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=2.3e-17 Score=130.92 Aligned_cols=136 Identities=21% Similarity=0.357 Sum_probs=108.6
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCceEEEEcCC--------------Ce--------------eeEEecCCCcceEEEEE
Q 021925 10 ERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN--------------GE--------------RLGTYRGHNGAVWCCDV 60 (305)
Q Consensus 10 ~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~--------------~~--------------~~~~~~~~~~~v~~i~~ 60 (305)
+..|+|++|-|. ...++++-.+|.++++|.+- +. ++..+.--.+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 367999999994 44666677899999997531 11 11112223468899999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140 (305)
Q Consensus 61 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (305)
+|||++||+.+.||.++|+|..+.+.+..
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~--------------------------------------------------- 327 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGV--------------------------------------------------- 327 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHH---------------------------------------------------
Confidence 99999999999999999999987655432
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 200 (305)
++..-+...|++|||||++|++|++|.-|.||.+..++.+..-+ +|...|+.++|+
T Consensus 328 -mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFD 383 (636)
T KOG2394|consen 328 -MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFD 383 (636)
T ss_pred -HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc---ccccceeeEeec
Confidence 23334667899999999999999999999999999999988887 899999999998
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.8e-15 Score=126.23 Aligned_cols=207 Identities=10% Similarity=0.046 Sum_probs=142.6
Q ss_pred CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (305)
Q Consensus 32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 108 (305)
..|.++|.+ +...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.......+..+....|+|+++.+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 378888875 4555667778889999999999998887764 468999999988765544466677889999999877
Q ss_pred EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeec
Q 021925 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESD 185 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~ 185 (305)
+..... .+...++.+... ......+..+........|+|||+.|+..+. +| .|+++|+..++.. .+.
T Consensus 261 a~~~~~----~g~~~Iy~~d~~-----~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt 330 (435)
T PRK05137 261 VMSLSQ----GGNTDIYTMDLR-----SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS 330 (435)
T ss_pred EEEEec----CCCceEEEEECC-----CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee
Confidence 654321 112222222211 1223445556666778999999998887664 33 6888898766543 332
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
.+...+....|+|+|+.|+..+.+ ..|.+||+.++. ...+.....+..+.|+|||+.|+..+.+
T Consensus 331 ---~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 331 ---FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ---cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEcc
Confidence 234456678899999999876643 368889986544 3344444457789999999998876543
No 209
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=7.7e-17 Score=120.38 Aligned_cols=188 Identities=20% Similarity=0.260 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEc-CCCeeeE--E-e----cCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLG--T-Y----RGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~-~~~~~~~--~-~----~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~ 83 (305)
-.+++|+|||.+|++|- ...|+++|+ +.|+... . + .+..+-+.+++|+| +.+.++.++...++-|+.-..
T Consensus 161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred heeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 45799999999999764 679999998 4443221 1 1 12367899999999 667999999999999998888
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-eeE--EEEcCCCC
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-INR--AVWGPLNR 159 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~--~~~~~~~~ 159 (305)
+.++..+. +.+.|+.+.|.++|+.++++.. ....+..|+++.. ..++..+..|.+. =.. ....|+++
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGaR----k~dkIl~WDiR~~-----~~pv~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR----KDDKILCWDIRYS-----RDPVYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeeccccc----CCCeEEEEeehhc-----cchhhhhhhhccCccceEEEecCCCCc
Confidence 88777766 8899999999999999988764 3456667777643 3455556666542 222 44568899
Q ss_pred EEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925 160 TIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 213 (305)
+|++|+.||.|++||++. +..+..+. .+...++.++++|--.++++++...
T Consensus 311 ~LasG~tdG~V~vwdlk~~gn~~sv~~---~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLGNEVSVTG---NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred eeeccCCCccEEEEecCCCCCcccccc---cccccccceecCcccceeeeccCce
Confidence 999999999999999998 66566665 6889999999999988888877553
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=5.4e-15 Score=122.72 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=140.0
Q ss_pred ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (305)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 109 (305)
.|.++|.+.... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++.......+.......|+|+++.++
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 688888765443 445556778999999999998886542 4579999998887655445556667899999999888
Q ss_pred EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCcEeeeecc
Q 021925 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-A--IVRIWDTETGKLLKESDK 186 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~ 186 (305)
....... ...+.++++. .+ ....+..+...+....|+|+|+.|+..+.+ + .|+++|+.+++.. .+.
T Consensus 259 ~~~~~~g--~~~I~~~d~~------tg-~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt- 327 (429)
T PRK03629 259 FALSKTG--SLNLYVMDLA------SG-QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT- 327 (429)
T ss_pred EEEcCCC--CcEEEEEECC------CC-CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-
Confidence 6533110 1123333332 11 233344445567889999999988877654 4 4555577666543 332
Q ss_pred ccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 187 ETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
..........|+|||+.|+..+.+ ..|.+||+.+++.. .+..........|+|||+.|+.++.++..
T Consensus 328 --~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 328 --WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred --cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCc
Confidence 233345678899999998876643 35889999887643 33322234578899999999998877653
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.5e-14 Score=116.70 Aligned_cols=218 Identities=13% Similarity=0.152 Sum_probs=143.0
Q ss_pred EEeeCCCceEEEEcCC-Ce--eeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEEecCC-CCe--eEEEeeCCCceE
Q 021925 26 FSCAKDHTPTVWFADN-GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVET-GAQ--LFTFNFDSPARS 98 (305)
Q Consensus 26 ~s~~~dg~v~iw~~~~-~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~-~~~--~~~~~~~~~v~~ 98 (305)
++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. ++. ............
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 33 445554 345678899999999887664 488899999973 332 223334556788
Q ss_pred EEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 021925 99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET 177 (305)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 177 (305)
++++|+++.++++... .+.+.++++..... ..+...... +......++++|+++++++++ .++.|.+||+.+
T Consensus 85 i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~--~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 85 ISTDHQGRFLFSASYN----ANCVSVSPLDKDGI--PVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred EEECCCCCEEEEEEcC----CCeEEEEEECCCCC--CCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 9999999988887532 34455555532111 111222222 223467788999999887655 569999999986
Q ss_pred CcEeee-----eccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCC--c--eEEEEEe-eC------CCeeEEEe
Q 021925 178 GKLLKE-----SDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDART--L--ELIKTYV-TE------RPVNAVTM 240 (305)
Q Consensus 178 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~--~~~~~~~-~~------~~v~~~~~ 240 (305)
...+.. ... ........++|+|+|++++++.. +++|.+||+.. + +.+..+. .+ .....+.+
T Consensus 158 ~g~l~~~~~~~~~~--~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 158 DGHLVAQEPAEVTT--VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCcccccCCCceec--CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 332221 111 12344678999999999988876 89999999973 2 3333332 11 12235889
Q ss_pred cCCCCcEEEeeCC
Q 021925 241 SPLLDHVCIGEPQ 253 (305)
Q Consensus 241 ~~~~~~l~~~~~~ 253 (305)
+|++++++++...
T Consensus 236 ~pdg~~lyv~~~~ 248 (330)
T PRK11028 236 TPDGRHLYACDRT 248 (330)
T ss_pred CCCCCEEEEecCC
Confidence 9999999998553
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-15 Score=107.87 Aligned_cols=186 Identities=11% Similarity=0.132 Sum_probs=134.5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
.|++|...|..+-++.++.|+.++-||+++|+..+++++|++.|.++.--.....+++|+.||++++||.++++.+..+.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 58999999977777777789999999999999999999999999999885555579999999999999999999988775
Q ss_pred eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC-CeeEEEEcCCCCEEEEeeCCCcE
Q 021925 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RINRAVWGPLNRTIISAGEDAIV 170 (305)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i 170 (305)
...... .++.|-+ .|-+++.+ ..++++|+ ...+
T Consensus 196 ~yk~~~-------------------------------------------~lRp~~g~wigala~~--edWlvCGg-Gp~l 229 (325)
T KOG0649|consen 196 PYKNPN-------------------------------------------LLRPDWGKWIGALAVN--EDWLVCGG-GPKL 229 (325)
T ss_pred cccChh-------------------------------------------hcCcccCceeEEEecc--CceEEecC-CCce
Confidence 221111 1122222 24444443 55676665 4679
Q ss_pred EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEE
Q 021925 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 249 (305)
.+|.++..++...+. -..++..+.|..+ .+++++..+.|.-|.+. |..-.... ......+..|+.+--.+++
T Consensus 230 slwhLrsse~t~vfp----ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFP----IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFIS 302 (325)
T ss_pred eEEeccCCCceEEEe----cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEE
Confidence 999999999888885 5677888888755 67888888889999875 44434343 2233455555543333333
Q ss_pred e
Q 021925 250 G 250 (305)
Q Consensus 250 ~ 250 (305)
.
T Consensus 303 ~ 303 (325)
T KOG0649|consen 303 I 303 (325)
T ss_pred e
Confidence 3
No 213
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=1.4e-15 Score=126.44 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=155.0
Q ss_pred CceEEEEcCCC-eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCe--eEE-----EeeCCCceEEEEe
Q 021925 32 HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ--LFT-----FNFDSPARSVDFA 102 (305)
Q Consensus 32 g~v~iw~~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~--~~~-----~~~~~~v~~~~~~ 102 (305)
+.+.+|++.+. .+...+. -...|++++|+| +..+++.|..+|+|.+||++.+.. ... ..+..++..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47899999876 4444444 577899999999 667888889999999999987765 222 2277888888887
Q ss_pred cCCc---eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe------ccCCCeeEEEEcCCC-CEEEEeeCCCcEEE
Q 021925 103 VGDK---LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK------GPQGRINRAVWGPLN-RTIISAGEDAIVRI 172 (305)
Q Consensus 103 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i 172 (305)
.+.. ++.++. ++.+..|.+................ .....+++++|.|.. ..++.|+++|.|.-
T Consensus 301 ~~~~~~~f~s~ss------DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 301 QNEHNTEFFSLSS------DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred ccCCCCceEEEec------CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 6433 344444 4555555554333222211111111 234467889998865 67889999999887
Q ss_pred EeCCCCcEee-----eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceEEEEEe-eCCCeeEEEecCCCC
Q 021925 173 WDTETGKLLK-----ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLD 245 (305)
Q Consensus 173 wd~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~ 245 (305)
-+....+.-. .......|.++|+++.++|-+..++..+.|.+++||... ...++..+. +...+.+++|||...
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence 4433222111 111233688999999999977666555559999999988 677777776 556699999999998
Q ss_pred cEEEeeC-CcEEEEEEeehhhhhhhh
Q 021925 246 HVCIGEP-QTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 246 ~l~~~~~-~~~~~~~~~~~~~~~~~~ 270 (305)
.+++..+ +|. +.+|++..+.
T Consensus 455 avF~~~d~~G~-----l~iWDLl~~~ 475 (555)
T KOG1587|consen 455 AVFATVDGDGN-----LDIWDLLQDD 475 (555)
T ss_pred eEEEEEcCCCc-----eehhhhhccc
Confidence 7666655 554 8888886543
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.1e-15 Score=125.66 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=140.0
Q ss_pred CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (305)
Q Consensus 32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 108 (305)
..|.+||.. +...+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.......+.......|+|+++.+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 368889975 44445566677889999999999999887643 46999999888765544455566688999999877
Q ss_pred EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCc--EEEEeCCCCcEeeeec
Q 021925 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAI--VRIWDTETGKLLKESD 185 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~ 185 (305)
+....... ...+.++++.. .....+..+.......+|+|+|+.|+..+. +|. |+++|+.+++..+...
T Consensus 263 ~~~~s~~g--~~~Iy~~d~~~-------g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 263 ALTLSRDG--NPEIYVMDLGS-------RQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred EEEEeCCC--CceEEEEECCC-------CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec
Confidence 65432110 12233333321 123344455555677899999998887764 444 7777877665433221
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
+.......+|+|+|+.|+..+.++ .|.+||+.+++.. .+..........|+|+|+.++..+.++
T Consensus 334 ----~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~ 400 (433)
T PRK04922 334 ----QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREG 400 (433)
T ss_pred ----CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecC
Confidence 223345689999999988765443 6999999887755 343333456789999999988776543
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=3.9e-14 Score=105.85 Aligned_cols=178 Identities=15% Similarity=0.220 Sum_probs=131.5
Q ss_pred CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC-CCCeeEEEeeCC-CceEEEEec--CCce
Q 021925 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTFNFDS-PARSVDFAV--GDKL 107 (305)
Q Consensus 32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~-~v~~~~~~~--~~~~ 107 (305)
..|.|||=...+++.++. ...+|.++.+.++ .|++.-. +.|.||... ..+.+..+.... +-.-++..| +..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 479999966677777777 6789999999876 5666554 789999987 556666665322 222333344 3333
Q ss_pred EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc-EEEEeCCCCcEeeeecc
Q 021925 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDK 186 (305)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~ 186 (305)
++.-+. ..+.+.+.++..... .....+..|++.|.+++.+.+|..+|+++..|+ |||||..+++.+..++.
T Consensus 151 LafPg~----k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 151 LAFPGF----KTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred EEcCCC----ccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 333221 124555555543321 145678899999999999999999999999986 78999999999999874
Q ss_pred ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
.. ....|.+++|||++.+|+++|..|++.|+.++.
T Consensus 223 G~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 GV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 32 346799999999999999999999999998875
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.1e-16 Score=116.66 Aligned_cols=200 Identities=11% Similarity=0.142 Sum_probs=143.0
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--eCCCceEEEEecC-CceEEEeCCcceeeeeeEEEEEee
Q 021925 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIA 128 (305)
Q Consensus 52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (305)
+..+..++|++.-..++++..|-.|++||-.. ++...++ ....+.+++|.|. ..-++++....+.++.........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence 34678899999777789999999999999765 5555555 5678999999994 455666655444444332222222
Q ss_pred cccCCCCCce--EEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE
Q 021925 129 RDPADQGGES--VLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205 (305)
Q Consensus 129 ~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 205 (305)
+......... +....+| .+|+++.|.+||..+++++- |..|.|||..++..+.... ...+.++-+.||||+.+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc---cCCCceeeEEEcCCCCE
Confidence 2211111122 2333344 78999999999999998885 6789999999987766553 35678889999999999
Q ss_pred EEEEeCCCeEEEEEcC-CceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 206 FLTGSLDKSAKLWDAR-TLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 206 l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
|++++-|+..++|+.. +....+-.-..+.|...+|+|+|+.|+.+....-+
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce
Confidence 9999999999999544 44444444466689999999999987766544433
No 217
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=2e-16 Score=114.92 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=123.9
Q ss_pred ccccceEEEEEcC-CCC--EEEEeeCCCceEEEEcCCCeeeE----------EecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925 8 GHERPLTYLKYNK-DGD--LLFSCAKDHTPTVWFADNGERLG----------TYRGHNGAVWCCDVSRDSMTLITGSADQ 74 (305)
Q Consensus 8 ~h~~~v~~~~~~~-~~~--~l~s~~~dg~v~iw~~~~~~~~~----------~~~~~~~~v~~i~~~~~~~~l~s~~~dg 74 (305)
+..+.+.|..+.- +++ ++++|-++|.|.+||+.++..+. ....|+.+|.++.+.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 3456677777543 333 46678889999999999874332 3346899999999988555557888888
Q ss_pred cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
.+..|++........+. ....-..-.+..+..
T Consensus 228 kl~~~Sl~~s~gslq~~------------------------------------------------~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIR------------------------------------------------KEITLKNPGVSGVRI 259 (323)
T ss_pred cceeeeeccccCccccc------------------------------------------------ceEEecCCCccceEE
Confidence 89999876331111000 001112234667888
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
-||++.+|+++.|+.||+|..++.+++..+. -|...|++++|+|+...+|.++.|++|.+|++
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999887 68999999999999999999999999999986
No 218
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2e-16 Score=118.87 Aligned_cols=208 Identities=16% Similarity=0.294 Sum_probs=149.3
Q ss_pred EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCCeeeEEe--cCCC-cceEEEEEcCCCcEEEEEeC----CCc
Q 021925 5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGERLGTY--RGHN-GAVWCCDVSRDSMTLITGSA----DQT 75 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~--~~~~-~~v~~i~~~~~~~~l~s~~~----dg~ 75 (305)
.+++|...++.++|.. ....+.+|+.||+|++||++.......+ .++. .+..+++...+++.+++|.. |-.
T Consensus 65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~ 144 (376)
T KOG1188|consen 65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS 144 (376)
T ss_pred eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence 4678889999999977 4568999999999999999986654443 4455 46677777667777777754 677
Q ss_pred EEEEecCCCCe-eEEEe--eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 76 AKLWNVETGAQ-LFTFN--FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 76 v~vwd~~~~~~-~~~~~--~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
|.+||++..+. +..+. |...|+++.|+|.. +++++++- ++-+.+.++.... ....+...-.+...|.+
T Consensus 145 v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv-----DGLvnlfD~~~d~---EeDaL~~viN~~sSI~~ 216 (376)
T KOG1188|consen 145 VVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV-----DGLVNLFDTKKDN---EEDALLHVINHGSSIHL 216 (376)
T ss_pred EEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc-----cceEEeeecCCCc---chhhHHHhhcccceeee
Confidence 99999998876 55554 88999999999965 45555543 5556666665442 22333334456777888
Q ss_pred EEEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeecc--------------------------------------------
Q 021925 152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDK-------------------------------------------- 186 (305)
Q Consensus 152 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------- 186 (305)
+.|..++ +.|.+-+..+...+|+++.+.+...+..
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 9998777 5577888888899998876654322111
Q ss_pred ---------------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 187 ---------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 187 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
..+|...|+++.|...+.++.+|++||.+.+|..
T Consensus 297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 0125556777777777888999999999999985
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=5.2e-14 Score=113.66 Aligned_cols=229 Identities=17% Similarity=0.151 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEEecCCCCeeEEEe
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~ 91 (305)
-..+.++|||+++++++.||.|.++|+.+++.+.+++.. ....++++++||++++++. .++.+.++|.++.+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 345779999999999999999999999999999999854 4568899999999998775 58999999999999998887
Q ss_pred eC--------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 92 FD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 92 ~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
.. ..+..+..++....+++... ....+|.+..... ..................|+|++++++.
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk------d~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK------DTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEET------TTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEc------cCCeEEEEEeccc---cccceeeecccccccccccCcccceeee
Confidence 32 24456666777664444422 1223333321111 1222223334455678899999998776
Q ss_pred e-eCCCcEEEEeCCCCcEeeeeccc----------------------------------------------------cCC
Q 021925 164 A-GEDAIVRIWDTETGKLLKESDKE----------------------------------------------------TGH 190 (305)
Q Consensus 164 ~-~~dg~i~iwd~~~~~~~~~~~~~----------------------------------------------------~~~ 190 (305)
+ ..+..|-++|.++++.+..+... ...
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 5 45678989998887665432110 001
Q ss_pred ccceEEEEEcCCCCEEEEE----eCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeC
Q 021925 191 KKTITSLAKAADGSHFLTG----SLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 191 ~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
..+ .-+..+|+++++.+. ...++|.++|.++.+.+..+. ....+..+.|+++|+.+.++..
T Consensus 269 G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 269 GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence 112 445668999999887 445889999999998888887 3335999999999998777643
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=7.3e-15 Score=127.35 Aligned_cols=248 Identities=13% Similarity=0.084 Sum_probs=166.1
Q ss_pred ecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925 6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~ 77 (305)
|..|+..|..++.++.. .++++||.||+|++|+...- +...++..-..++.++...+++..+|.++.||.|.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 66788899999988754 99999999999999997642 22334444567899999999999999999999999
Q ss_pred EEecCCCCe-------eEEEe--eCCCceEE-EEecC-Cc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 78 LWNVETGAQ-------LFTFN--FDSPARSV-DFAVG-DK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 78 vwd~~~~~~-------~~~~~--~~~~v~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
+.+++..+. ....+ ..+.+.+| ++... .. .++.++. ...+..|++...... ........
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~-----~~~iv~~D~r~~~~~----w~lk~~~~ 1194 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD-----LSRIVSWDTRMRHDA----WRLKNQLR 1194 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe-----ccceEEecchhhhhH----HhhhcCcc
Confidence 999875211 11111 22333333 23222 22 3444433 445555665433221 11223445
Q ss_pred CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC---CCEEEEEe--CCCeEEEEEc
Q 021925 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGS--LDKSAKLWDA 220 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~iwd~ 220 (305)
.+.|++++.+|.+++++.|+..|.+.+||++-+.++..... ++..+++.+..+|- ....++++ ..+.|.+|++
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 68899999999999999999999999999999998888863 35578888887763 24444444 4788999999
Q ss_pred CCceEEEEEeeCCC--------------------eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 221 RTLELIKTYVTERP--------------------VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 221 ~~~~~~~~~~~~~~--------------------v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
.+|.+...+..... .....+..-+..+.+|+.|.. ++.|+....
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~k-----IR~wD~~~p 1336 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMK-----IRKWDPTRP 1336 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccc-----eeeccCCCc
Confidence 99877666652211 112233334456777776666 556665443
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.8e-15 Score=114.76 Aligned_cols=220 Identities=16% Similarity=0.241 Sum_probs=168.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe----eeEEecCCCcceEEEEEcCCCc-EEEEEeCC--CcEEEEecC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDSM-TLITGSAD--QTAKLWNVE 82 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d--g~v~vwd~~ 82 (305)
+++|..++.. || .|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-++..+ .+++|+.. ..+.+||++
T Consensus 105 ~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 4445555443 33 67888899999999887443 33333333 4567777777544 55668888 889999999
Q ss_pred CCCeeEEEe----------eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925 83 TGAQLFTFN----------FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (305)
Q Consensus 83 ~~~~~~~~~----------~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (305)
+.+.+.+-+ .+-.++++.|.++ ...+++++. ...+++++.. ..-.++..+.-...+++
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~-----~hqvR~YDt~-----~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR-----YHQVRLYDTR-----HQRRPVAQFDFLENPIS 251 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec-----ceeEEEecCc-----ccCcceeEeccccCcce
Confidence 886665543 2335667888887 667776654 4555555554 33467777777889999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeee-eccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (305)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 229 (305)
++...|+++.+++|..-|.+..+|++.++.... +. +-.+.++++..+|.++++++++.|..+||+|+.+.+++...
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccCceeeccccC---CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 999999999999999999999999999988877 54 77889999999999999999999999999999998888888
Q ss_pred eeCCCeeEEEecCCCC
Q 021925 230 VTERPVNAVTMSPLLD 245 (305)
Q Consensus 230 ~~~~~v~~~~~~~~~~ 245 (305)
...+.++++.+.++-+
T Consensus 329 YvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 329 YVKSRLTFILLRDDVN 344 (412)
T ss_pred hhhccccEEEecCCcc
Confidence 8888888888876544
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=5.6e-16 Score=123.29 Aligned_cols=183 Identities=12% Similarity=0.211 Sum_probs=143.0
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
+.+|.+.|.+-.|+|||.-|+++++||.|++|. ++|-...++-....+|.|++|.|+.+.++-+.. +.+.|=-+....
T Consensus 100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~ 177 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANS 177 (737)
T ss_pred hhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccccc
Confidence 568999999999999999999999999999998 566666666667889999999998877666544 567777766555
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.+...+ |++-+.++.|++.+.+++.++. +...++|+- .+.....-..|.-+|++++|.|+ +.++.+
T Consensus 178 k~i~WkAHDGiiL~~~W~~~s~lI~sgGE-----D~kfKvWD~-------~G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 178 KIIRWRAHDGLVLSLSWSTQSNIIASGGE-----DFRFKIWDA-------QGANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred ceeEEeccCcEEEEeecCccccceeecCC-----ceeEEeecc-------cCcccccCChhccceeeeeeccc-cceeee
Confidence 555555 8999999999999999999886 444555554 34556666789999999999999 555555
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 218 (305)
+. .+++ +.. ...+.|..++||+||..+++|+..|.+.+=
T Consensus 245 S~-nt~R------------~~~--p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 245 SY-NTAR------------FSS--PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ee-eeee------------ecC--CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 43 2333 221 356789999999999999999999986653
No 223
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=3.6e-14 Score=118.47 Aligned_cols=210 Identities=12% Similarity=0.053 Sum_probs=141.3
Q ss_pred CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (305)
Q Consensus 32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 108 (305)
..|.++|... ...+.+..+...+...+|+|||++|+.++.+ ..|.+||+.+++.............+.|+|+++.+
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 3577778653 3345555577789999999999999877653 47999999988765555566667789999999877
Q ss_pred EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeec
Q 021925 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESD 185 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~ 185 (305)
+....... ...+..+++.. .....+..+........|+|+++.|+..+. ++ .|+++|+.+++... +.
T Consensus 249 ~~~~~~~~--~~~i~~~d~~~-------~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~ 318 (417)
T TIGR02800 249 AVSLSKDG--NPDIYVMDLDG-------KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT 318 (417)
T ss_pred EEEECCCC--CccEEEEECCC-------CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence 65432110 11233333221 122333444444557789999998876654 33 68888988766433 32
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
.+........|+|+|++++.++.++ .|.+||+.++... .+.........+|+|+|+.|+.++.++..
T Consensus 319 ---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 319 ---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred ---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCCc
Confidence 2345567789999999999888776 7999999876543 23222334567899999998887665543
No 224
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=6.6e-14 Score=115.87 Aligned_cols=230 Identities=13% Similarity=0.037 Sum_probs=144.7
Q ss_pred ceEecccccceEEEEEcCCCCE--E-EEeeCCC--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CC--
Q 021925 3 PILMKGHERPLTYLKYNKDGDL--L-FSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ-- 74 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~--l-~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg-- 74 (305)
|..+......+..-+|+|||+. + ++...+| .|.+.++.+++.. .+....+.....+|+|||+.|+..+. +|
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 3445555666778899999975 2 2444444 5777788777643 33334555667899999998876553 23
Q ss_pred --cEEEEecCCC---CeeEEEeeC-CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925 75 --TAKLWNVETG---AQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (305)
Q Consensus 75 --~v~vwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (305)
.+..|++..+ +........ .......|+|+|+.++..++.. +...++..... ..+.....+..+...
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~----g~~~ly~~~~~---~~g~~~~~lt~~~~~ 328 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQID---PEGQSPRLLTKKYRN 328 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECc---ccccceEEeccCCCC
Confidence 3444776653 322222222 3446789999999877665421 12233332211 111223344445556
Q ss_pred eeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcCC
Q 021925 149 INRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART 222 (305)
Q Consensus 149 i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 222 (305)
+....|+|||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..+. ...|+++|+..
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 7789999999988876543 479999998887643322 2335677899999998875443 35699999988
Q ss_pred ceEEEEEeeCCCeeEEEecCCC
Q 021925 223 LELIKTYVTERPVNAVTMSPLL 244 (305)
Q Consensus 223 ~~~~~~~~~~~~v~~~~~~~~~ 244 (305)
++..........+...+|+|..
T Consensus 405 g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 405 KKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEeecCCCcccCceecCCC
Confidence 7765555555567788888854
No 225
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1e-14 Score=112.10 Aligned_cols=249 Identities=14% Similarity=0.128 Sum_probs=169.4
Q ss_pred CceEecc--cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC--CCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925 2 RPILMKG--HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAK 77 (305)
Q Consensus 2 ~~~~l~~--h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~v~ 77 (305)
|||-+.+ |...|.|++|....+.+++|+.+++|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS 174 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence 5776665 457899999999999999999999999999999888776652 235899999999888999999999999
Q ss_pred EEecCCCC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC-CceEEEEeccCCCeeEE
Q 021925 78 LWNVETGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKGPQGRINRA 152 (305)
Q Consensus 78 vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 152 (305)
+||.+..+ ++...+.+.....+.|+|....++..... .+...+|+.......-- ......+......-..+
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~----~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE----TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc----cCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 99998654 33333466777888999976555444321 23344455443211000 00000111112233678
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCcE-eeeecccc---CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-----
Q 021925 153 VWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKET---GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----- 223 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----- 223 (305)
.|+|+|+.+++--....-.+||+.+.++ +.++.... .....+.+++|..|. .+++|+.+-.|++|.+...
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccC
Confidence 8999999888877766677889876443 33332000 112457788887664 4999999999999987521
Q ss_pred ------------------eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 224 ------------------ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 224 ------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+.+..++ |.+-++.+.|+|...+|++.+-.+.
T Consensus 330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 330 FTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENS 380 (609)
T ss_pred ccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhh
Confidence 1122233 6677899999999888887776665
No 226
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=5e-15 Score=110.62 Aligned_cols=204 Identities=14% Similarity=0.153 Sum_probs=156.8
Q ss_pred EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC---eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA---QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (305)
Q Consensus 47 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (305)
.+..-.++|+|.+|++|+..+|.+-....|.||.....+ ...+++ +...++.+.|+|..+.++.++. +...
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-----drna 79 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-----DRNA 79 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-----CCCc
Confidence 333346789999999999999999999999999987765 344444 8889999999999988888775 2333
Q ss_pred EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe---eeeccccCCccceEEEEE
Q 021925 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAK 199 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~ 199 (305)
.+|... ....-++...+..+....+++.|+|.++.+|+|+.-..|.+|-.+..+.- +.+. ..+...|++++|
T Consensus 80 yVw~~~---~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik--kPirStv~sldW 154 (361)
T KOG1523|consen 80 YVWTQP---SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK--KPIRSTVTSLDW 154 (361)
T ss_pred cccccC---CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC--Cccccceeeeec
Confidence 333332 22344677778889999999999999999999999999999987654322 1111 146789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcC------------------CceEEEEE-eeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 200 AADGSHFLTGSLDKSAKLWDAR------------------TLELIKTY-VTERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
+|++-+|++|+.|+..+++..- -|+++.++ ...+.+..+.|+|+|..|+-.+.|+.+.+..
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 9999999999999999998531 13445555 3667899999999999999888777754443
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.1e-14 Score=108.24 Aligned_cols=227 Identities=13% Similarity=0.130 Sum_probs=153.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCC----
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG---- 84 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~---- 84 (305)
-.+..++|++.-..+|++..|-.|++|+-.. +....++ .....|++++|-|. ++.|+.|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4578899999777788999999999999665 4444444 24567999999994 4677777774 5999975421
Q ss_pred C--------eeEEE--eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 85 A--------QLFTF--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 85 ~--------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
+ ....+ ....+|+++.|.+++..++.++- ....+.+|+.... ..+.......+.+.-+.|
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~----gsssi~iWdpdtg------~~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF----GSSSIMIWDPDTG------QKIPLIPKGLGGFSLLKW 246 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc----CcceEEEEcCCCC------CcccccccCCCceeeEEE
Confidence 1 11112 24468999999999999988763 2455666766432 122222344567888999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--Cc--------
Q 021925 155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TL-------- 223 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~-------- 223 (305)
|||+.+|+++.-|+..++|+... ....+-.. ..+.|...+|+|+|++|+..+. |.-++|.+. ..
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~l----gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQSWTKERWIL----GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred cCCCCEEEEecccceeeeehhcccceecceec----cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence 99999999999999999996543 33333222 4458999999999998765442 223444332 10
Q ss_pred -----eEEEEEe----------eCCCeeEEEecCCCCcEEEeeCCc
Q 021925 224 -----ELIKTYV----------TERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 224 -----~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
.++..+. ..++..+++|.|.|.+|++.-..+
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0111111 245689999999999999975444
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.68 E-value=3.5e-14 Score=118.53 Aligned_cols=211 Identities=16% Similarity=0.086 Sum_probs=138.6
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCCC--cE
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQ--TA 76 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg--~v 76 (305)
+..+..+...+...+|+|||++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 34555677778999999999999987654 479999998876543 3345666778999999987764 44444 58
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
.+||+.+++...............|+|+++.++..++... ...++.+... . .....+..+........|+|
T Consensus 261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~----~-~~~~~l~~~~~~~~~~~~sp 331 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDAD----G-GEVRRLTFRGGYNASPSWSP 331 (417)
T ss_pred EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----CceEEEEECC----C-CCEEEeecCCCCccCeEECC
Confidence 8889887765444444445567789999988776654211 1122222211 1 12334444556677889999
Q ss_pred CCCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEE
Q 021925 157 LNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTY 229 (305)
Q Consensus 157 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 229 (305)
++++++.++.++ .|.+||+.++.. ..+.. ........|+|+|+.|+..+.++ .+++.+.. ++....+
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~----~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTD----TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCe-EEccC----CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence 999999888775 899999987543 33321 11234568999999888777654 35555543 4444444
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-14 Score=116.00 Aligned_cols=242 Identities=15% Similarity=0.137 Sum_probs=169.5
Q ss_pred ccccceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCC--CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 8 GHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+|....+.|..+|||+|+ |+|..--.|++||+.+.... +..| ...|.-.-.+.|-..++.-..|.+|-+... .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak--~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK--Y 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh--c
Confidence 577888999999999976 55667889999998865543 3333 334555555556666777777888877653 3
Q ss_pred CeeEEEeeCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
..-..+..+.....++++.-..-++ +++.. .+.-.++ +.+..+..+....+.++++..++-..+|++
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~------evYRlNL------EqGrfL~P~~~~~~~lN~v~in~~hgLla~ 192 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGS------EVYRLNL------EQGRFLNPFETDSGELNVVSINEEHGLLAC 192 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCc------ceEEEEc------cccccccccccccccceeeeecCccceEEe
Confidence 3445556777778888876443333 33321 1111112 334555556666788999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEeeeecccc---CCc-----cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCC
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKET---GHK-----KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TER 233 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~---~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~ 233 (305)
|+.+|.|..||.++...+..+.... .|. ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. ...
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence 9999999999999887766664321 122 349999999999999999999999999999999887766 456
Q ss_pred CeeEEEecCCC--CcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 234 PVNAVTMSPLL--DHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 234 ~v~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
+|..+.|.+.+ +.+++. |... +++|+-.....
T Consensus 273 pi~~l~~~~~~~q~~v~S~--Dk~~----~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM--DKRI----LKIWDECTGKP 306 (703)
T ss_pred ceeeecccccCCCceEEec--chHH----hhhcccccCCc
Confidence 78999998764 334443 3332 77777554433
No 230
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=7.8e-14 Score=116.61 Aligned_cols=225 Identities=13% Similarity=0.087 Sum_probs=142.2
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCC--cE
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA 76 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg--~v 76 (305)
+..+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|||+.|+ +.+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34566677889999999999999876643 368899998876533 333445566789999998886 444455 58
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
.++|+.+++...............|+|+++.++..++.. +...++.... ..++. ..+...........|+|
T Consensus 270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~----~~g~~-~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNV----NGGRA-ERVTFVGNYNARPRLSA 340 (430)
T ss_pred EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEEC----CCCCE-EEeecCCCCccceEECC
Confidence 888998877554334455566789999998877665421 1112222211 11111 11221122334578999
Q ss_pred CCCEEEEeeCC-C--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEe
Q 021925 157 LNRTIISAGED-A--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV 230 (305)
Q Consensus 157 ~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 230 (305)
+++.++..+.+ + .|.++|+.+++. +.+.. . .......|+|||+.++..+.+ ..+.+.++.. .....+.
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~--~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~ 414 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD--T--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLP 414 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCE-EEccC--C--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECc
Confidence 99999877653 3 588999988764 33321 1 112245899999998876654 3477777753 3333343
Q ss_pred -eCCCeeEEEecCC
Q 021925 231 -TERPVNAVTMSPL 243 (305)
Q Consensus 231 -~~~~v~~~~~~~~ 243 (305)
....+...+|+|-
T Consensus 415 ~~~g~~~~p~ws~~ 428 (430)
T PRK00178 415 TAQGEVREPSWSPY 428 (430)
T ss_pred CCCCCcCCCccCCC
Confidence 3455677778774
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=9.9e-14 Score=104.34 Aligned_cols=246 Identities=11% Similarity=0.112 Sum_probs=164.7
Q ss_pred ecccccceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-C----------
Q 021925 6 MKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-D---------- 73 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d---------- 73 (305)
+..-..++.+++|||||+.++ +...+-.|.+|.+.+.+... +.--+..+..++|+|||++.+.++. |
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 344567799999999996554 56668899999998766433 2223345688889999887776543 1
Q ss_pred -------------------------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEee
Q 021925 74 -------------------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 128 (305)
Q Consensus 74 -------------------------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (305)
..+.+||.--.-.+..+..+-.+..++|+|.+.++++++-+.....-....|...
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 2344555333333334455667888999999999988875321111111111100
Q ss_pred cc---------------------------------cC----------------CCCCceEEEEe------ccCCCeeEEE
Q 021925 129 RD---------------------------------PA----------------DQGGESVLILK------GPQGRINRAV 153 (305)
Q Consensus 129 ~~---------------------------------~~----------------~~~~~~~~~~~------~~~~~i~~~~ 153 (305)
.. +. ......+..++ ...-.+-.++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 00 00 00001111222 2234566799
Q ss_pred EcCCCCEEEEeeC--CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 154 WGPLNRTIISAGE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 154 ~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
|++|..++++-.. -..+-+||++..+....+. ...+|....|+|....|+.+....++++|.......+..-..
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~ 401 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK 401 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC
Confidence 9999999998764 3679999999877666554 567899999999999999888888999999876556555556
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+..|..+.|.-+|..++..+.|..-
T Consensus 402 GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 402 GFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred CceeeeEEecCCCcEEEEEcCCceE
Confidence 6789999999999999999888653
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.6e-16 Score=122.20 Aligned_cols=255 Identities=16% Similarity=0.254 Sum_probs=174.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcC--CCcEEEEEeCCCcEEEEec
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~ 81 (305)
.|.+|.+.|+.+.|+..|..|++|+.|..|.+||...++....+. +|...|....|.| +...+++++.||.+++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 478999999999999999999999999999999999988777765 6999999999988 4468999999999999876
Q ss_pred CCCCeeE----EEeeCCCceEEEEecCCceEEEeC-Ccceee--------------------eeeEEEEEeecccCCC--
Q 021925 82 ETGAQLF----TFNFDSPARSVDFAVGDKLAVITT-DPFMEL--------------------NSAIHVKRIARDPADQ-- 134 (305)
Q Consensus 82 ~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~--------------------~~~~~~~~~~~~~~~~-- 134 (305)
.....+. ...+.+++..++..|+...-+... ...... ...+.+..+...+...
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 4333222 223777788887777543322221 111100 0011222222111100
Q ss_pred ----------------------CCceEEEE------eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc-------
Q 021925 135 ----------------------GGESVLIL------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK------- 179 (305)
Q Consensus 135 ----------------------~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------- 179 (305)
....+..+ ....-.|++++++.++.-|+++..|-.|+++.-..+.
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 00001111 1223468999999888888888889999999543221
Q ss_pred -----EeeeeccccCCc--cceEEEEE-cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEe
Q 021925 180 -----LLKESDKETGHK--KTITSLAK-AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 180 -----~~~~~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 250 (305)
.++.. ..+|. ..|..+-| -|...++++|+.=|.|.||+-.+++.+..+. -..-|+|+.-+|--..||++
T Consensus 377 s~~~~~~k~v--YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 377 SPREQYVKRV--YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred cchhhccchh--hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 12221 12454 34666654 5778899999999999999999999888776 22378999999999999998
Q ss_pred eCCcEEEEEEeehhhh
Q 021925 251 EPQTIKFMLLVYLFVL 266 (305)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (305)
+-+.- +++|..
T Consensus 455 Gid~D-----VKIWTP 465 (559)
T KOG1334|consen 455 GIDHD-----VKIWTP 465 (559)
T ss_pred CCccc-----eeeecC
Confidence 76665 666654
No 233
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.2e-13 Score=115.25 Aligned_cols=223 Identities=15% Similarity=0.068 Sum_probs=139.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCC-C--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCCCc--EEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKD-H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQT--AKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg~--v~v 78 (305)
.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.+|. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556678899999999998876543 3 58888988776532 3323334457899999997765 455665 777
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
+|+++++...............|+|+++.++..++.. +...++.+... .++ ...+..........+|+|+|
T Consensus 291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~----~g~-~~~Lt~~g~~~~~~~~SpDG 361 (448)
T PRK04792 291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLA----SGK-VSRLTFEGEQNLGGSITPDG 361 (448)
T ss_pred EECCCCCeEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECC----CCC-EEEEecCCCCCcCeeECCCC
Confidence 7888776544444445567889999999887765421 11223332211 112 22222222223457899999
Q ss_pred CEEEEeeC-CC--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceEEEEEe-e
Q 021925 159 RTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYV-T 231 (305)
Q Consensus 159 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~-~ 231 (305)
++|+..+. ++ .|.++|+.+++.. .+.. . .......|+|||+.|+..+.+ | .+++++. +++....+. .
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~ 435 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQ-VLTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG 435 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeE-EccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC
Confidence 99887655 33 4666788877643 3321 1 112234799999988765543 3 3777786 455555554 4
Q ss_pred CCCeeEEEecCC
Q 021925 232 ERPVNAVTMSPL 243 (305)
Q Consensus 232 ~~~v~~~~~~~~ 243 (305)
...+...+|+|-
T Consensus 436 ~g~~~~p~Wsp~ 447 (448)
T PRK04792 436 QGEVKSPAWSPF 447 (448)
T ss_pred CCCcCCCccCCC
Confidence 456778888873
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6e-14 Score=112.35 Aligned_cols=253 Identities=16% Similarity=0.196 Sum_probs=162.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-----eC-----CCcEEEE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-----SA-----DQTAKLW 79 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-----~~-----dg~v~vw 79 (305)
..+++..+++++|+++|.+. +..++|++..++..+.+.... .+.++.|+|-+++|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44578889999998888765 679999999888655555433 78999999999888751 11 2447799
Q ss_pred ecCCCCeeEEEe-----------------------------------------eCCCceEEEEecCCc--eEEEeCCcce
Q 021925 80 NVETGAQLFTFN-----------------------------------------FDSPARSVDFAVGDK--LAVITTDPFM 116 (305)
Q Consensus 80 d~~~~~~~~~~~-----------------------------------------~~~~v~~~~~~~~~~--~~~~~~~~~~ 116 (305)
+++++.....+. +...+..+.++|.+. .+++-....-
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 887643222221 222344455555421 1221111000
Q ss_pred eeeeeEEEEEee----------------------------------cccCCC----------------CCceEEEEeccC
Q 021925 117 ELNSAIHVKRIA----------------------------------RDPADQ----------------GGESVLILKGPQ 146 (305)
Q Consensus 117 ~~~~~~~~~~~~----------------------------------~~~~~~----------------~~~~~~~~~~~~ 146 (305)
.....++++... ....+. .+.....--...
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 000011111110 000000 011122222347
Q ss_pred CCeeEEEEcCCCCEEEE--eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---CCeEEEEEcC
Q 021925 147 GRINRAVWGPLNRTIIS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDAR 221 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~ 221 (305)
++|.++.|+|+++.+++ |-+-.++.|+|++ ++++..+. .++-+++-|+|.|++|+.++. .|.|.+||+.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 89999999999987664 4567899999997 67777764 567788999999999988775 5889999999
Q ss_pred CceEEEEEeeCCCeeEEEecCCCCcEEEeeCC-cEEEEEEeehhhhhhhhhh
Q 021925 222 TLELIKTYVTERPVNAVTMSPLLDHVCIGEPQ-TIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 272 (305)
+.+++..+.... -+-+.|+|||+++++++.. ..++...+++|+....++.
T Consensus 345 n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 345 NRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred chhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 999988887544 3456999999999998654 7777777888876544433
No 235
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=2.1e-16 Score=131.72 Aligned_cols=209 Identities=20% Similarity=0.291 Sum_probs=149.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
..+||.+.|+.++.+.+...+|+++.|..|++|.+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+-.
T Consensus 227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE 302 (1113)
T ss_pred cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc
Confidence 367999999999999999999999999999999999999999999999999999999954 7788999999998711
Q ss_pred CeeE-----EEeeCCCceEEEEecCCc--------------------------eEEEeCCcce------eeeeeEEEEEe
Q 021925 85 AQLF-----TFNFDSPARSVDFAVGDK--------------------------LAVITTDPFM------ELNSAIHVKRI 127 (305)
Q Consensus 85 ~~~~-----~~~~~~~v~~~~~~~~~~--------------------------~~~~~~~~~~------~~~~~~~~~~~ 127 (305)
-... .+.....+.++.+...+. .++....... .......+|+
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn- 381 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWN- 381 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeee-
Confidence 0000 001111222222222222 2222221000 0011111222
Q ss_pred ecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE
Q 021925 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206 (305)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 206 (305)
...+...+.+.+|...+..+.++|-+..+ .+++.||...|||+-.+.+++.+.. + ...+....|+++|..+
T Consensus 382 -----l~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~--g-h~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 382 -----LYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI--G-HGKLVDGKFSQDGTSI 453 (1113)
T ss_pred -----cccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec--c-cceeeccccCCCCceE
Confidence 23455667778899999999999977554 4889999999999999998888772 4 4556667899999999
Q ss_pred EEEeCCCeEEEEEcCCceEE
Q 021925 207 LTGSLDKSAKLWDARTLELI 226 (305)
Q Consensus 207 ~~~~~dg~i~iwd~~~~~~~ 226 (305)
+....-|.++|...-.++..
T Consensus 454 ~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred ecCCCCCceEEeccCCCccc
Confidence 99888899999876655443
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=4.6e-12 Score=102.52 Aligned_cols=240 Identities=14% Similarity=0.160 Sum_probs=155.0
Q ss_pred cceEEEEEcCCCCEEEEeeC----CCceEEEEcCCC--e--eeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEec
Q 021925 11 RPLTYLKYNKDGDLLFSCAK----DHTPTVWFADNG--E--RLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNV 81 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~----dg~v~iw~~~~~--~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~ 81 (305)
.....++++|++++|+++.. +|.|..|++... + .+.+..........++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34567889999999998876 568988887763 3 33334323455678999999999988875 899999999
Q ss_pred CCCCeeEEE----e-----------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-cc
Q 021925 82 ETGAQLFTF----N-----------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GP 145 (305)
Q Consensus 82 ~~~~~~~~~----~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 145 (305)
.....+... . ......++.++|+++++++..-+ ...+..+++.... ........+. ..
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG----~D~v~~~~~~~~~--~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG----ADRVYVYDIDDDT--GKLTPVDSIKVPP 190 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT----TTEEEEEEE-TTS---TEEEEEEEECST
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC----CCEEEEEEEeCCC--ceEEEeecccccc
Confidence 874322222 1 23456789999999988886532 2234444443221 0011122222 34
Q ss_pred CCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCC--CCc--Eeeeeccc---cCCccceEEEEEcCCCCEEEEEe-CCCeEE
Q 021925 146 QGRINRAVWGPLNRTIISAGE-DAIVRIWDTE--TGK--LLKESDKE---TGHKKTITSLAKAADGSHFLTGS-LDKSAK 216 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 216 (305)
......+.|+|++++++...+ ++.|.++++. +++ .+..+... .........++++|||++|+++. .++.|.
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 456789999999998877765 7889999988 332 22222211 11123678899999999987766 467899
Q ss_pred EEEcC--Cc--eEEEEEee-CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 217 LWDAR--TL--ELIKTYVT-ERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 217 iwd~~--~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+|++. ++ +.+..+.. ......++++|+|++|+++..++..
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 99983 23 34444443 4558999999999999998755543
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.3e-15 Score=121.56 Aligned_cols=161 Identities=22% Similarity=0.380 Sum_probs=123.0
Q ss_pred eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925 44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (305)
Q Consensus 44 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
..+.+.+|.+.|.+++|+.+|.+|++|+.|-.+.|||.-..+.+..+.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------------------- 89 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------------------- 89 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--------------------------------
Confidence 345678999999999999999999999999999999987666655443
Q ss_pred EEEeecccCCCCCceEEEEeccCCCeeEEEEcCC--CCEEEEeeCCCcEEEEeCCCCc-------EeeeeccccCCccce
Q 021925 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGK-------LLKESDKETGHKKTI 194 (305)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v 194 (305)
.+|...|.++.|-|. .+.+++|..|..|+++|+...+ ...+......|...|
T Consensus 90 -------------------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 90 -------------------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV 150 (758)
T ss_pred -------------------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence 578888999999884 4688899999999999998522 111122223688899
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEEcCCceE-------EEEEe--e--CCCeeEEEecCCCCc-EEEeeCCcE
Q 021925 195 TSLAKAADG-SHFLTGSLDKSAKLWDARTLEL-------IKTYV--T--ERPVNAVTMSPLLDH-VCIGEPQTI 255 (305)
Q Consensus 195 ~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-------~~~~~--~--~~~v~~~~~~~~~~~-l~~~~~~~~ 255 (305)
..++..|++ +.+.++++||+|+-+|++.... ...+. + --...|+.++|...+ |++|+++-.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpf 224 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPF 224 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCch
Confidence 999999988 7889999999999999986311 11111 1 123578999998765 777777665
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.9e-13 Score=111.37 Aligned_cols=208 Identities=13% Similarity=0.033 Sum_probs=135.3
Q ss_pred ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (305)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 109 (305)
.|.++|.+.+. .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...............|+|+++.++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 47777766444 45555577889999999999998876543 368899999887655444555666799999998877
Q ss_pred EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeecc
Q 021925 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDK 186 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~ 186 (305)
....... ...+..+++. ......+..+........|+|+++.|+..+. +| .|+++|+.+++..+...
T Consensus 259 ~~~~~~g--~~~Iy~~d~~-------~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~- 328 (430)
T PRK00178 259 FVLSKDG--NPEIYVMDLA-------SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF- 328 (430)
T ss_pred EEEccCC--CceEEEEECC-------CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-
Confidence 5432111 1122223322 1223334445555677899999998876654 33 68888887776433221
Q ss_pred ccCCccceEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 187 ETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.........|+|+|+.|+..+.+ + .|.++|+.+++... +..........|+|+|+.++.++.++.
T Consensus 329 ---~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g 396 (430)
T PRK00178 329 ---VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQG 396 (430)
T ss_pred ---CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCC
Confidence 11233457899999998876653 3 58899998876533 332223345689999999988765543
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=8.6e-13 Score=109.31 Aligned_cols=214 Identities=12% Similarity=0.037 Sum_probs=132.5
Q ss_pred CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE---EEEeCCC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCc
Q 021925 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL---ITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106 (305)
Q Consensus 32 g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l---~s~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 106 (305)
+.|.+.|.+.+. .+.+.........-+|+|||+.+ ++...+| .|.+.++.+++.......+......+|+|+|+
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 356677765444 34455556677888999999752 2444444 47777888887666555667777889999998
Q ss_pred eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEE--eCCC-CcEee
Q 021925 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIW--DTET-GKLLK 182 (305)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~ 182 (305)
.++...+...........+++... ..++...............+|+|||+.|+..+ .+|...+| ++.. +....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g---~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETG---AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccC---CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 888765421111111111111110 11222233333334456789999999888665 46654444 5432 22233
Q ss_pred eeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925 183 ESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
.+. .+...+....|+|||+.|+..+.+ ..|.+||+.+++..........+....|+|||+.|+....
T Consensus 321 ~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 321 LLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred Eec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence 333 234466788999999998876543 4699999998876544334445778999999998876543
No 240
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.62 E-value=4.1e-12 Score=100.55 Aligned_cols=224 Identities=9% Similarity=0.038 Sum_probs=144.8
Q ss_pred EcCCCCEEEEeeC----------CCceEEEEcCCCeeeEEecCCC-------cceEEEEEcCCCcEEEEEe-C-CCcEEE
Q 021925 18 YNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGS-A-DQTAKL 78 (305)
Q Consensus 18 ~~~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~-~-dg~v~v 78 (305)
++|||+.|+.+.. +..|.+||..+++.+..+.--. .....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998887765 6899999999999998887322 2234789999999998776 3 689999
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeee--eeEEEEEeecccCCCCCceEEEEeccCCCee-EEEEc
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN--SAIHVKRIARDPADQGGESVLILKGPQGRIN-RAVWG 155 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 155 (305)
.|+.+++.+..+..+....-...++....+.+......... ...... . .....+.....++. .-.+.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~---------~~~~vf~~~~~~v~~rP~~~ 202 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-I---------KPTEVFHPEDEYLINHPAYS 202 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE-E---------eeeeeecCCccccccCCceE
Confidence 99999999999987664444444333333333222111100 000000 0 00001111000000 00345
Q ss_pred C-CCCEEEEeeCCCcEEEEeCCCC-----cEeeeeccc----cCCccceEEEEEcCCCCEEEEEeC----------CCeE
Q 021925 156 P-LNRTIISAGEDAIVRIWDTETG-----KLLKESDKE----TGHKKTITSLAKAADGSHFLTGSL----------DKSA 215 (305)
Q Consensus 156 ~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i 215 (305)
+ +++++....+ |.|.+.|+... +....+... .-..+...-++++|+++.+++... .+.|
T Consensus 203 ~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 203 NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence 5 7887777776 99999996443 222222111 012334445999999998887431 2579
Q ss_pred EEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEeeC
Q 021925 216 KLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGEP 252 (305)
Q Consensus 216 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 252 (305)
.++|..+++.+..+..+..+..++++||++ .|++...
T Consensus 282 ~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 282 FVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred EEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence 999999999999999888999999999999 7777653
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.9e-14 Score=114.54 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=154.9
Q ss_pred EEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC
Q 021925 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 94 (305)
+|+++.-..-|+.++....|+-.+++.|+.+..+....++++++..++-..+|++|+.+|.|-.||.+....+..+....
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 44555433345555556688999999999999998888999999999988899999999999999999887776655322
Q ss_pred CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q 021925 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (305)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 174 (305)
.|.+. ........|+++.|+.+|-.+++|+.+|.+.|||
T Consensus 218 ~v~s~-----------------------------------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 218 SVNSH-----------------------------------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ccCCC-----------------------------------------ccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 22110 0011234589999999999999999999999999
Q ss_pred CCCCcEeeeeccccCCccceEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925 175 TETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+++.+++..-. .+..-+|..+.|.+. ++.+++. ....++|||-.+|++...+.....++.+++-|++.++++|-.
T Consensus 257 LRa~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 257 LRASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred cccCCceeecc--cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence 99988876554 245668899999775 3444443 456799999999999999998888999999999999999977
Q ss_pred CcEEEE
Q 021925 253 QTIKFM 258 (305)
Q Consensus 253 ~~~~~~ 258 (305)
+..+.-
T Consensus 334 ~~~m~~ 339 (703)
T KOG2321|consen 334 SSKMHT 339 (703)
T ss_pred CCccee
Confidence 765433
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.8e-15 Score=118.34 Aligned_cols=195 Identities=16% Similarity=0.223 Sum_probs=165.1
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (305)
.-..+.++.+|++|+.|+.-|.|..+|..+++....+.....|.++.|-.+..+++++-.....+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD------------- 197 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD------------- 197 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-------------
Confidence 3467889999999999999999999999999999999999999999999999888887654333322
Q ss_pred CCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (305)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 213 (305)
..+..++.++.| ..+..+.|-|..-+|+++++.|.++--|+.+|+.+..+. ...+.+..|.-+|-+..+-+|...|
T Consensus 198 ~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 198 NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCCccceEEEcCCCc
Confidence 123334444443 467889999999999999999999999999999999887 5677888899999888999999999
Q ss_pred eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925 214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 214 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
+|.+|...+.+++..+. |.++|.++++.++|+++++++-|.. +++|++....
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-----~kIWDlR~~~ 326 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-----VKIWDLRNFY 326 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-----eeEeeecccc
Confidence 99999999998886665 9999999999999999999999988 6777765544
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.8e-12 Score=108.29 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=131.5
Q ss_pred ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (305)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 109 (305)
.+.++|..... .+.+..+...+.+..|+|||+.|+..+. ++ .|.+||+.+++.......+.......|+|+++.++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 56666765443 3455556778999999999998887654 33 58888998887644433455556789999999877
Q ss_pred EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeecc
Q 021925 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDK 186 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~ 186 (305)
...+. .+...++.+... ......+..+.......+|+|+++.|+..+. ++ .|+++|+.+++......
T Consensus 278 ~~~~~----~g~~~Iy~~dl~-----tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~- 347 (448)
T PRK04792 278 LVLSK----DGQPEIYVVDIA-----TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF- 347 (448)
T ss_pred EEEeC----CCCeEEEEEECC-----CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-
Confidence 65321 122222222211 1223344445556677899999998876554 33 57777887776443221
Q ss_pred ccCCccceEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
........+|+|||++|+..+. ++ .|.++|+.+++... +..........|+|+|+.|+..+.++..
T Consensus 348 ---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 348 ---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred ---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCc
Confidence 1222345689999999877655 33 46667888776532 2222222355899999998887655543
No 244
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=6e-14 Score=121.82 Aligned_cols=222 Identities=18% Similarity=0.238 Sum_probs=152.3
Q ss_pred EEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCC-------CeeEEEe-eCCCceEEEEecCCce
Q 021925 37 WFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETG-------AQLFTFN-FDSPARSVDFAVGDKL 107 (305)
Q Consensus 37 w~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~ 107 (305)
|+. .|..+..+..|...+..++.+++. .+++|||.||+|++||.++- +...++. ....+.++...+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 553 478888999999999999998754 89999999999999998633 2333444 6778899999999999
Q ss_pred EEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEEecc-CCCeeEE-EEcC-CCC-EEEEeeCCCcEEEEeCCCCcEee
Q 021925 108 AVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGP-QGRINRA-VWGP-LNR-TIISAGEDAIVRIWDTETGKLLK 182 (305)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~i~~~-~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~ 182 (305)
+++++. ++.+.+..+..... ............+ .+.+.++ ++.. .+. .++.+..-+.|..||+++.....
T Consensus 1113 ~Av~t~-----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1113 FAVSTK-----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred EEEEcC-----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 988876 34444444433210 0111112222222 2223322 2222 123 67788888999999999877666
Q ss_pred eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCC---cEEEeeC-CcEE
Q 021925 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLD---HVCIGEP-QTIK 256 (305)
Q Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~---~l~~~~~-~~~~ 256 (305)
.++.. ...+.|++++.+|.+.++++|+..|.+-+||++-+.++.++. +..++..+..+|-.+ ..++++. ...-
T Consensus 1188 ~lk~~-~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1188 RLKNQ-LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred hhhcC-ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 66533 345789999999999999999999999999999999998887 456788888776544 4555444 2222
Q ss_pred EEEEeehhhhhhh
Q 021925 257 FMLLVYLFVLFLD 269 (305)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (305)
+..|+....
T Consensus 1267 ----vs~wn~~~g 1275 (1431)
T KOG1240|consen 1267 ----VSTWNMETG 1275 (1431)
T ss_pred ----eeeeecccC
Confidence 555655544
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.59 E-value=9.8e-13 Score=106.14 Aligned_cols=180 Identities=19% Similarity=0.226 Sum_probs=133.6
Q ss_pred CCCCEEEEeeCCCceEEEEcCCCeeeEEecC---CCcceEEEEEc--------------------CCCcEEEEEeCCCcE
Q 021925 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRG---HNGAVWCCDVS--------------------RDSMTLITGSADQTA 76 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~v~~i~~~--------------------~~~~~l~s~~~dg~v 76 (305)
|-+.++|....||.+++|+...++....+.. -++..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887666542 12233344442 011233333334444
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
.+++...++....+ .-..|.+.|+++.++.
T Consensus 83 ~~ys~~~g~it~~~--------------------------------------------------st~~h~~~v~~~~~~~ 112 (541)
T KOG4547|consen 83 LLYSVAGGEITAKL--------------------------------------------------STDKHYGNVNEILDAQ 112 (541)
T ss_pred EEEEecCCeEEEEE--------------------------------------------------ecCCCCCcceeeeccc
Confidence 44444433322221 1246889999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCe
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV 235 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v 235 (305)
+-..|.+++.|+.+..|+....+.++... .....+.+++.+|||..+++++ +.|++||+++++.+..|. |.++|
T Consensus 113 ~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v 187 (541)
T KOG4547|consen 113 RLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPV 187 (541)
T ss_pred ccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcce
Confidence 99999999999999999999999888887 6677899999999999999886 579999999999999998 89999
Q ss_pred eEEEecCC-----CCcEEEeeCCc
Q 021925 236 NAVTMSPL-----LDHVCIGEPQT 254 (305)
Q Consensus 236 ~~~~~~~~-----~~~l~~~~~~~ 254 (305)
++++|..+ |.+++++....
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred EEEEEEEeccccccceeeeccccc
Confidence 99999887 77777654333
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=5.7e-13 Score=100.85 Aligned_cols=241 Identities=14% Similarity=0.186 Sum_probs=159.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----eeEEecCC------------CcceEEEEEcCCC--cEEEEE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGH------------NGAVWCCDVSRDS--MTLITG 70 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~------------~~~v~~i~~~~~~--~~l~s~ 70 (305)
.+-|.++.|...|.+||+|..+|.|.++.-+... ....++.| ...|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3468999999999999999999999999644322 22333333 3578899999865 456777
Q ss_pred eCCCcEEEEecCCCCeeE-----------------------------------EEe--eCCCceEEEEecCCceEEEeCC
Q 021925 71 SADQTAKLWNVETGAQLF-----------------------------------TFN--FDSPARSVDFAVGDKLAVITTD 113 (305)
Q Consensus 71 ~~dg~v~vwd~~~~~~~~-----------------------------------~~~--~~~~v~~~~~~~~~~~~~~~~~ 113 (305)
+.|.+|++|.+....... .+. |...+.++.++.+...++.+.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 889999999875321111 011 3445667777777777777663
Q ss_pred cceeeeeeEEEEEeecccCCCCCceEEEEecc-----CCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcEe----ee
Q 021925 114 PFMELNSAIHVKRIARDPADQGGESVLILKGP-----QGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLL----KE 183 (305)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~----~~ 183 (305)
..+.+|.+.... ..-.+..++++ ..-|++..|+|.. +.++-.+..|+|++-|++..... +.
T Consensus 185 ------LRINLWnlei~d---~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 185 ------LRINLWNLEIID---QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ------eeeeeccccccC---CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 445555554321 11223333333 2457888999975 67778888999999999953321 11
Q ss_pred ecccc---------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEc-CCceEEEEEe-eC------------CCe---eE
Q 021925 184 SDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDA-RTLELIKTYV-TE------------RPV---NA 237 (305)
Q Consensus 184 ~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~-~~------------~~v---~~ 237 (305)
+..+. .--..|..+.|+++|+++++-.. -+|++||+ ...+++.++. |. ..| ..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 11110 12246888999999999988653 57999999 4566776665 21 112 45
Q ss_pred EEecCCCCcEEEeeCCcEEEEEE
Q 021925 238 VTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
++|+.++.++++|+-.+...++.
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEEcCCcceEecccccceEEEec
Confidence 78999999999999887754444
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.2e-12 Score=99.12 Aligned_cols=258 Identities=15% Similarity=0.146 Sum_probs=180.8
Q ss_pred ccceEEEEEcCCCC--EEEEeeCCCceEEEEcCCCeeeEEe------cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 10 ERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTY------RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 10 ~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
...|++++|..+++ .+...+.|..+..+..+.......+ ....++|..+... |+ .|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 34577777876553 4555556777777777665544332 3345667777665 44 6788888999999998
Q ss_pred CCCC----eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec---------cCCC
Q 021925 82 ETGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---------PQGR 148 (305)
Q Consensus 82 ~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 148 (305)
+.+. .+..+.....+..+.-.+....+++.++... ...+.+|++... +.+..-+. -.-.
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~--~n~lkiwdle~~------~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN--INELKIWDLEQS------KQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecCchhc--ccceeeeecccc------eeeeeccCCCCccccceeeee
Confidence 7443 4445556677777777776666665433111 234455555422 11111111 1124
Q ss_pred eeEEEEcCC--CCEEEEeeCCCcEEEEeCCCC-cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925 149 INRAVWGPL--NRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 149 i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 225 (305)
++++.|-|. ...|++++.-+.+++||.+.+ +++.++. -.+.+++++...|+++++++|..-|.+..+|++.++.
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 677888887 789999999999999999864 4666665 4578999999999999999999999999999999998
Q ss_pred EEE-Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhhccccccccccc
Q 021925 226 IKT-YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYNLYCSASRKYIY 285 (305)
Q Consensus 226 ~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (305)
+.. +. ..+.+.++..+|.++++++++-|.. +++.+.....++....+.+--..+.
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRy-----vRIhD~ktrkll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-----VRIHDIKTRKLLHKVYVKSRLTFIL 338 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeecccee-----EEEeecccchhhhhhhhhccccEEE
Confidence 877 44 6778999999999999999999988 6666666666666666654444333
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=3.3e-14 Score=127.56 Aligned_cols=204 Identities=15% Similarity=0.229 Sum_probs=157.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++. -...|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3555667788999999999999999999999999988888777652 34789999999999999999999999999987
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
.+.....+ ++.....+.|.. ..++.+.. ..-+..+..|+...... ...+. ..|.+.++++++-|..+.|+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~--s~d~~n~~lwDtl~~~~---~s~v~--~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGR--SSDNRNVCLWDTLLPPM---NSLVH--TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhcccc--CCCCCcccchhcccCcc---cceee--eecCCCceEEEEcCcceEEE
Confidence 44444444 666666777665 23332221 22234455555543221 12233 89999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
+|+.+|.|++||++..+.++.++. ++ ...++++|+..|.++||++.....++++.+
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999999999998887777651 34 566899999999999999998888887763
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=9.2e-11 Score=89.85 Aligned_cols=244 Identities=11% Similarity=0.135 Sum_probs=160.6
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCC---CceEEEEcCC--Ceee--EEecCCCcceEEEEEcCCCcEEEEEeC-CCcEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADN--GERL--GTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAK 77 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~--~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~ 77 (305)
+-.+.+.++-|+|+|+++.|+++-.+ |.|.-|.++. |+.. ........+-+.+++++++++++++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34566778899999999999988654 6777777664 4432 222222334489999999999988876 68899
Q ss_pred EEecCC-CC---eeEEEeeCCC----------ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 78 LWNVET-GA---QLFTFNFDSP----------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 78 vwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
++-++. |. .+....+.+. +....+.|+++++++..-+ ...+.++++..... ..... ..+
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----~Dri~~y~~~dg~L-~~~~~-~~v- 187 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----TDRIFLYDLDDGKL-TPADP-AEV- 187 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----CceEEEEEcccCcc-ccccc-ccc-
Confidence 998865 32 2233334444 7888999999999887632 22333334331111 11111 111
Q ss_pred ccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCC-cEeeeec------cccCCccceEEEEEcCCCCEEEEEeC-CCe
Q 021925 144 GPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETG-KLLKESD------KETGHKKTITSLAKAADGSHFLTGSL-DKS 214 (305)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 214 (305)
........+.|+|++++....++ +++|.+|..... ..+..++ ..-........+..++||++|.++.. ...
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence 44556788999999999888776 899999998863 2223222 11123456778899999999988764 346
Q ss_pred EEEEEcCC--ceEEE--EEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 215 AKLWDART--LELIK--TYV-TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 215 i~iwd~~~--~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
|.++.+.. +++.. ... +......+.++|.+++|++++.++-.
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 88887653 33221 122 34447899999999999999766543
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=8.4e-13 Score=113.00 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=150.8
Q ss_pred EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
-.+..+...++.++.+..+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.+|+....+
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------ 166 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------ 166 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC------
Confidence 33444566788888899999999887766655542221 12233446666788999999999999976111
Q ss_pred eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (305)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 171 (305)
.+. .+.+|.+.|.++.++.+|+++++.++|..++
T Consensus 167 ---------------------------------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiR 200 (967)
T KOG0974|consen 167 ---------------------------------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIR 200 (967)
T ss_pred ---------------------------------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCccee
Confidence 111 4689999999999999999999999999999
Q ss_pred EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEE
Q 021925 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~ 249 (305)
+|++.+.+.... ..-+|...|..+.|.|+ .+++++.|-+.++|+.. ++.+..+. ....++.++..+....+++
T Consensus 201 lW~i~s~~~~~~--~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 201 LWPIDSREVLGC--TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred eeecccccccCc--ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEe
Confidence 999999887661 12279999999999998 89999999999999755 44444555 4567999999999988999
Q ss_pred eeCCcEEEEEEeehhhhhhhhhh
Q 021925 250 GEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
++.|+. +++|++......
T Consensus 276 ~g~Ds~-----lk~~~l~~r~~e 293 (967)
T KOG0974|consen 276 GGNDST-----LKLWDLNGRGLE 293 (967)
T ss_pred eccCcc-----hhhhhhhccccc
Confidence 998887 888887765554
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=1.2e-10 Score=94.27 Aligned_cols=223 Identities=12% Similarity=0.124 Sum_probs=139.9
Q ss_pred cceEEEEEcCCCCEEEEeeC-CCceEEEEcCC-CeeeEE---ec----------CCCcceEEEEEcCCCcEEEEEeC-CC
Q 021925 11 RPLTYLKYNKDGDLLFSCAK-DHTPTVWFADN-GERLGT---YR----------GHNGAVWCCDVSRDSMTLITGSA-DQ 74 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~l~s~~~-dg 74 (305)
.....++++|++++|+++.. +|.|.++++.. +..... +. .......++.++|+++++++... ..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 34567899999999998864 89999999986 433222 21 12345789999999998877644 45
Q ss_pred cEEEEecCCCC--eeE--E--EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----
Q 021925 75 TAKLWNVETGA--QLF--T--FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---- 144 (305)
Q Consensus 75 ~v~vwd~~~~~--~~~--~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (305)
.|.+|++.... ... . .......+.+.|+|+++++++.... ...+....+.... ...+.+.....
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~----s~~v~v~~~~~~~--g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL----SNTVSVFDYDPSD--GSLTEIQTISTLPEG 240 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEETTT--TEEEEEEEEESCETT
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC----CCcEEEEeecccC--CceeEEEEeeecccc
Confidence 79999997665 222 2 2356678999999999998887642 2333333333100 01111111111
Q ss_pred c--CCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCC--CcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEE
Q 021925 145 P--QGRINRAVWGPLNRTIISAGE-DAIVRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLW 218 (305)
Q Consensus 145 ~--~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 218 (305)
. ......++++|+|++|+++.. .+.|.+|++.. ++. ..+..........+.++++|+|++|+++. .++.|.+|
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 1 125778999999999888775 67899999942 332 22222113345589999999999998877 46789998
Q ss_pred Ec--CCceEEEEEe--eCCCeeEEEe
Q 021925 219 DA--RTLELIKTYV--TERPVNAVTM 240 (305)
Q Consensus 219 d~--~~~~~~~~~~--~~~~v~~~~~ 240 (305)
++ ++|.+...-. .-....|+.|
T Consensus 320 ~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 320 DIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEeCCCCcEEEecccccCCCCEEEeC
Confidence 76 5666554432 3444566665
No 252
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=1.4e-11 Score=99.66 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=122.3
Q ss_pred CEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEE
Q 021925 23 DLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (305)
Q Consensus 23 ~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~ 101 (305)
+++ ++-..+|.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+.+.+.++....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~------- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG------- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-------
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-------
Confidence 344 445568999999999999999998655444567899999999999999999999999999887765222
Q ss_pred ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcE
Q 021925 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL 180 (305)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 180 (305)
....++++++|+++++++ .++.+.++|.++.++
T Consensus 79 ----------------------------------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 79 ----------------------------------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp ----------------------------------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred ----------------------------------------------CcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 234577888888888775 589999999999999
Q ss_pred eeeecccc----CCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEE--EEEeeCCCeeEEEecCCCCcEEEee
Q 021925 181 LKESDKET----GHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELI--KTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 181 ~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
++.+.... .....+..+..+|.+..++.. -..+.|.+.|....+.+ ..+..........|+|++++++++.
T Consensus 113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEE
T ss_pred eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecc
Confidence 98876321 134567788888888855554 44588999998776544 3445667788999999999987763
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.50 E-value=1.2e-10 Score=92.27 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=121.2
Q ss_pred eccCCCeeEEEEcCCCCEEEEeeCCC-cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 143 KGPQGRINRAVWGPLNRTIISAGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
-++.+.|.-..+..+++-++.|..|| .+-|+|.++++..+ +. ..-+.|.++..+|+|++++.+.....+.+.|+.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e---~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IE---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-ee---CCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 35667788888888888899999999 89999999876544 33 466789999999999999999999999999999
Q ss_pred CceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh---------hhhcccccccccccc-cccc
Q 021925 222 TLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL---------FYNLYCSASRKYIYD-DLLN 290 (305)
Q Consensus 222 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~ 290 (305)
+++....-+ ...-|+.++|||+++++|-+-.++. ..-.+++++...+.. -+....+.+++|+.+ ....
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy-~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY-YTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcce-eeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 997755444 4556899999999999999877664 333355555433222 234566778888875 3567
Q ss_pred cCCCCceEEEEEee
Q 021925 291 FDAGPQHFIFYFLF 304 (305)
Q Consensus 291 ~~~~~~~~~~~~~~ 304 (305)
+|..++.+.|-|+|
T Consensus 511 LdPs~Drv~fnf~f 524 (668)
T COG4946 511 LDPSNDRVIFNFSF 524 (668)
T ss_pred cCCCCCeeEEEEEE
Confidence 88999999999887
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=5.9e-12 Score=95.40 Aligned_cols=200 Identities=20% Similarity=0.334 Sum_probs=147.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcC----CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
..+++++.++++...|+.|-.+|++.-+.+. ....++....|...|..+-|+...+.+++.+.|..+.---.+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 4678999999999999999999999988654 344556667899999999999888899999999887666667776
Q ss_pred eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
.+..+.......++.+.-. ....+.. .+.+....+. .....++..+.+|.+.+.+++|.|..+.|++|.
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~--~~fvGd~-----~gqvt~lr~~----~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDAL--YAFVGDH-----SGQITMLKLE----QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred cccceEeeccCCCCceeeE--EEEeccc-----ccceEEEEEe----ecCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence 6665554444444333322 2222211 1111111111 133467888999999999999999999999999
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
.|..+.+||+.-.+-... +..+|...|..+...+--+.+.+++.||.|.+||.+.
T Consensus 217 ~d~~vi~wdigg~~g~~~--el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTAY--ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCCcceee--eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999975443221 1227889999988888788899999999999999763
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=108.17 Aligned_cols=217 Identities=17% Similarity=0.286 Sum_probs=150.6
Q ss_pred ceEecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEe---cCCCc---ceEEEEEcC-CCcEEEEEeCCC
Q 021925 3 PILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTY---RGHNG---AVWCCDVSR-DSMTLITGSADQ 74 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~---~~~~~---~v~~i~~~~-~~~~l~s~~~dg 74 (305)
+..+..|.++|..++.-|+. ..+.+++.|+.+.-.|+..+.+...+ ..+.. ....++..| +...+++++.|.
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 45677899999999999954 57889999999999998876543333 23333 578889999 455899999999
Q ss_pred cEEEEecCCCCee------EEE-------eeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceE-
Q 021925 75 TAKLWNVETGAQL------FTF-------NFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESV- 139 (305)
Q Consensus 75 ~v~vwd~~~~~~~------~~~-------~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (305)
.+++||.+.-... ..+ ..+-.|++++|+.++ .+++...+..+.+........-...........+
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 9999997643221 111 245578999999554 5555544433333211110000000000001222
Q ss_pred EEEeccCCC--eeEEE-EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925 140 LILKGPQGR--INRAV-WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (305)
Q Consensus 140 ~~~~~~~~~--i~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 216 (305)
..+++|... |..+- |-|...++++|+.-|.|.||+-.+++.++.+. +....|+|+.-+|--..||+++.|..|+
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me---gDr~VVNCLEpHP~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME---GDRHVVNCLEPHPHLPVLASSGIDHDVK 461 (559)
T ss_pred hhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh---cccceEeccCCCCCCchhhccCCcccee
Confidence 237788654 44443 56888999999999999999999999888887 5555999999999999999999999999
Q ss_pred EEEcCC
Q 021925 217 LWDART 222 (305)
Q Consensus 217 iwd~~~ 222 (305)
||-..+
T Consensus 462 IWTP~~ 467 (559)
T KOG1334|consen 462 IWTPLT 467 (559)
T ss_pred eecCCc
Confidence 998643
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=3.5e-11 Score=89.43 Aligned_cols=215 Identities=13% Similarity=0.087 Sum_probs=145.4
Q ss_pred CCceEEEEcCCCeeeE--Eec-CCCcceEEEEEcC---CCc-EEEEEeCCCcEEEEecCCCCeeEEEe------eCC-Cc
Q 021925 31 DHTPTVWFADNGERLG--TYR-GHNGAVWCCDVSR---DSM-TLITGSADQTAKLWNVETGAQLFTFN------FDS-PA 96 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~--~~~-~~~~~v~~i~~~~---~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~------~~~-~v 96 (305)
.|.+.+|++.+.+... +++ ...+.+..+.|.- +|. .++-+..+|.|.++..........++ ... ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678889887655433 221 2334567777753 444 56677778999999876544433333 111 24
Q ss_pred eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeC
Q 021925 97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDT 175 (305)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~ 175 (305)
.++.|++.+..+++........ .... .....+.++..+.|+-++....|+... +.+.+|+.|+.+..||+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~-----~v~~----t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSIS-----GVYE----TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEE-----EEec----ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 5777888887777665422111 0000 011124456788999999999998655 67889999999999999
Q ss_pred CC-CcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcC-CceEEEEEeeCCCeeEEEecCCCC--cEEEe
Q 021925 176 ET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDAR-TLELIKTYVTERPVNAVTMSPLLD--HVCIG 250 (305)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~ 250 (305)
+. ++.+.. ...-|...|.++.-+| .+.++++|+.|-.|++||.+ -++++..-...+.|+.+.++|.-. .++++
T Consensus 196 R~p~~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 196 RIPKTFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred cCCcceeee--cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH
Confidence 93 333322 2235888999998877 57789999999999999999 578888877888999999999654 45555
Q ss_pred eCCcEE
Q 021925 251 EPQTIK 256 (305)
Q Consensus 251 ~~~~~~ 256 (305)
-.+|..
T Consensus 274 Mh~G~k 279 (339)
T KOG0280|consen 274 MHNGAK 279 (339)
T ss_pred HhcCce
Confidence 555544
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=6.1e-10 Score=85.45 Aligned_cols=216 Identities=14% Similarity=0.136 Sum_probs=142.9
Q ss_pred CCceEEEEcCCCee-e--EEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCC--CCeeEEE--e-eCCCceEE
Q 021925 31 DHTPTVWFADNGER-L--GTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVET--GAQLFTF--N-FDSPARSV 99 (305)
Q Consensus 31 dg~v~iw~~~~~~~-~--~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~--~~~~~~~--~-~~~~v~~~ 99 (305)
+.-|++|++.+.+- + ..+-...+.++-++|+|+++.|.++.. +|.|.-|.+.. |+....- . ...+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999874321 1 122246677899999999999988865 47788887764 4332221 1 34455889
Q ss_pred EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC----------eeEEEEcCCCCEEEEeeC-CC
Q 021925 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR----------INRAVWGPLNRTIISAGE-DA 168 (305)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg 168 (305)
++++++++++++.-. .+.+.+..+.... ..........|.+. +....+.|++++|++..- -.
T Consensus 95 svd~~g~~vf~AnY~----~g~v~v~p~~~dG---~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 95 SVDEDGRFVFVANYH----SGSVSVYPLQADG---SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred EECCCCCEEEEEEcc----CceEEEEEcccCC---ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 999999999887532 2333343333221 11112222233333 778899999999998864 35
Q ss_pred cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCc----eEEEEEe-------eCCCee
Q 021925 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTL----ELIKTYV-------TERPVN 236 (305)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~----~~~~~~~-------~~~~v~ 236 (305)
+|.+|++..++....-+.........+.|.|+|++++..+.++ +++|.+|..... +.++.+. ......
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 7999999977654433322235567889999999999876665 899999998763 2223222 234567
Q ss_pred EEEecCCCCcEEEeeCC
Q 021925 237 AVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~ 253 (305)
++.++|||++|.++...
T Consensus 248 aIhis~dGrFLYasNRg 264 (346)
T COG2706 248 AIHISPDGRFLYASNRG 264 (346)
T ss_pred EEEECCCCCEEEEecCC
Confidence 88899999999998543
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.1e-12 Score=106.88 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=166.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---------------eeEEecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---------------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 74 (305)
.....|++|+.+..++|+|+.||.+++-.+.+.. .-+++.+|++.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3458899999999999999999999999776421 1245679999999999999888999999999
Q ss_pred cEEEEecCCCCe---eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 75 TAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 75 ~v~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
-|.+|-+-.+.- ...-+..+.|.+++|..+|..+.+...+...+.+.+....+.... +++ .....
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKe----------Lkg--~~l~h 161 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKE----------LKG--QLLAH 161 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchh----------cch--heccc
Confidence 999999876642 222235677899999999999888877655555554433332111 111 12336
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec---------cccCCccceEEEEEc--------CCCCEEEEEeCCCe
Q 021925 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD---------KETGHKKTITSLAKA--------ADGSHFLTGSLDKS 214 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~ 214 (305)
+.|++|.+.++.+-..|.+.++|.+..- ...+. ........+..+.|. |+...|+.+-..|.
T Consensus 162 v~ws~D~~~~Lf~~ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeecccHHHHHhhhcCCcEEEecccccH-HHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 8899999988888889999999976321 11100 000112224444443 57888999999999
Q ss_pred EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
+.+-.-.+-.....+..+-.+....|+++|..|++++.+.
T Consensus 241 ~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 9887655544445555667889999999999999998654
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=2.1e-12 Score=110.70 Aligned_cols=148 Identities=25% Similarity=0.360 Sum_probs=122.9
Q ss_pred EcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCce
Q 021925 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR 97 (305)
Q Consensus 18 ~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~ 97 (305)
.+++.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||++++++|+|+++++|++++.+...
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------- 211 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------- 211 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------
Confidence 45666789999999999999987444444688999999999999999999999999999999999876532
Q ss_pred EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 021925 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177 (305)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 177 (305)
...-+|...+..++++|+ +++++++|.+.++|+..
T Consensus 212 ------------------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~- 246 (967)
T KOG0974|consen 212 ------------------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN- 246 (967)
T ss_pred ------------------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc-
Confidence 112578899999999998 89999999999999765
Q ss_pred CcEeeeeccccCC-ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 178 GKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 178 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
++.+..+. .| ...+..++..++...++|++.||.+++||+..
T Consensus 247 ~~~l~~y~---~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 GTQLEVYD---EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cceehhhh---hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 44455555 34 35789999999999999999999999999754
No 260
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=5e-10 Score=92.45 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=120.6
Q ss_pred ceEEEEEcCCCCE-EEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCC--CcEEEEecCCC
Q 021925 12 PLTYLKYNKDGDL-LFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSAD--QTAKLWNVETG 84 (305)
Q Consensus 12 ~v~~~~~~~~~~~-l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d--g~v~vwd~~~~ 84 (305)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+......|+|||+.|+. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999984 6644433 468888998887654433 5566677889999987654 3333 45777788777
Q ss_pred CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
+.......+.......|+|+|+.++..++.. +...++.+... .++..+.... +. ....|+|+|++|+..
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~----~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLN----SGSVEQVVFH--GK-NNSSVSTYKNYIVYS 336 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCC----CCceEEEEECC----CCCeEeCccC--CC-cCceECCCCCEEEEE
Confidence 6544333444445678999998888776532 12223332221 1122111111 11 124899999988866
Q ss_pred eCC---------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCc
Q 021925 165 GED---------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTL 223 (305)
Q Consensus 165 ~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 223 (305)
+.. ..|.+.|+.++.. +.+.. . .......|+|||+.|+..+.++ .+.+.++...
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYI-RRLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCe-EECCC---C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 543 3688889987764 33432 1 2233578999999887665432 3666676543
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.2e-10 Score=93.85 Aligned_cols=220 Identities=15% Similarity=0.208 Sum_probs=147.4
Q ss_pred ccccceEEEEEcCCCC--EEEE-----eeCCCceEEEEcCCCeeeEEe---cCCCcceEEEEEcCCCc-EEE--EEeCC-
Q 021925 8 GHERPLTYLKYNKDGD--LLFS-----CAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSM-TLI--TGSAD- 73 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~--~l~s-----~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~i~~~~~~~-~l~--s~~~d- 73 (305)
=|...|+.+.+||.+. .+|+ .|.-..|+||.......-..+ .-....=..+.|++-|. +|+ +..-|
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 3677899999999643 4443 345568999987632211111 11222335677887664 232 22223
Q ss_pred --------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 74 --------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 74 --------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
.++++.+++...+...+.-.++|.++.|+++++-+++..+ .+-..+.+.++. ....+.-.
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG---fMPAkvtifnlr---------~~~v~df~ 310 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYG---FMPAKVTIFNLR---------GKPVFDFP 310 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEe---cccceEEEEcCC---------CCEeEeCC
Confidence 3688888886666666668899999999999987777654 122233333331 22233445
Q ss_pred CCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC------CCeEE
Q 021925 146 QGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAK 216 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~ 216 (305)
.++=+++-|+|.|++++.++- -|.+-+||..+.+++..+. . ..-+-+.|+|||++++|++. |+.++
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---c--CCceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 677788999999999997765 4899999999988888775 2 23355799999999998875 77899
Q ss_pred EEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925 217 LWDARTLELIKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 217 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 245 (305)
||+.. |..+......+....+.|-|-..
T Consensus 386 iwhyt-G~~l~~~~f~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 386 IWHYT-GSLLHEKMFKSELLQVEWRPFND 413 (566)
T ss_pred EEEec-CceeehhhhhHhHhheeeeecCC
Confidence 99975 66666555444677888876543
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=6.2e-13 Score=107.03 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=140.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~ 77 (305)
.+.||...|++++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+-++++++ ||-|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 3679999999998877888999999999999998763 23556788999999999999988877765 78899
Q ss_pred EEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 78 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
+||.--++.+..... .| ..+.+..+..-|+
T Consensus 808 lWDPFigr~Laq~~d---------ap-----------------------------------------k~~a~~~ikcl~n 837 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMED---------AP-----------------------------------------KEGAGGNIKCLEN 837 (1034)
T ss_pred eecccccchhHhhhc---------Cc-----------------------------------------ccCCCceeEeccc
Confidence 999866655443220 00 0111111111221
Q ss_pred --CCEEEE-eeCCCcEEEEeCCCCcEeeeeccc--cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925 158 --NRTIIS-AGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T 231 (305)
Q Consensus 158 --~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 231 (305)
...+.. ++...+|+++|.+.......++.. .+.+..+++++..+.|++++.+-.+|.|.+.|.++|+.+..++ .
T Consensus 838 v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 838 VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 223333 467899999999987766555432 3456779999999999999999999999999999999998876 3
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+.....++ .|..+.++....+...
T Consensus 918 ecdllqla-apsdq~L~~saldHsl 941 (1034)
T KOG4190|consen 918 ECDLLQLA-APSDQALAQSALDHSL 941 (1034)
T ss_pred cchhhhhc-CchhHHHHhhccccee
Confidence 33333333 3444555555444443
No 263
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.8e-09 Score=89.16 Aligned_cols=205 Identities=8% Similarity=-0.061 Sum_probs=127.4
Q ss_pred ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcE-EEEEeC---CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (305)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 108 (305)
.|.+=|.+ |...+.+... +......|+|||+. ++..+. +..|.++|+.+++.......++......|+|+++.+
T Consensus 170 ~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred eEEEECCC-CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 44444543 3333334333 37789999999984 554433 356888899888776665666666778899999877
Q ss_pred EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeec
Q 021925 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESD 185 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~ 185 (305)
+...... +...++.+... . .....+..+........|+|||+.|+..+. .+ .|++.|+.+++..+...
T Consensus 248 a~~~~~~----g~~~Iy~~dl~----~-g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 248 LLTMAPK----GQPDIYLYDTN----T-KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred EEEEccC----CCcEEEEEECC----C-CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 7654321 12223332211 1 123334434433445689999998876653 23 68888998776644332
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCC---------CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLD---------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
. +. . ...|+|||+.|+..+.. ..|.+.|+.+++... +..........|+|||+.|+..+..+.
T Consensus 319 ~--g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 319 H--GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred C--CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 1 11 1 24899999998766643 368888988876533 332233446899999999887765544
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=3.9e-10 Score=90.03 Aligned_cols=245 Identities=14% Similarity=0.184 Sum_probs=161.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCC---------------ceEEEEcCCCeeeEEecC-------------------------
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDH---------------TPTVWFADNGERLGTYRG------------------------- 50 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg---------------~v~iw~~~~~~~~~~~~~------------------------- 50 (305)
..|..+.|+|++++|.+-+..+ .+.+||..++..+..+..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 3478889999999999876443 489999987765443211
Q ss_pred -----C---------------CcceEEEEEcCCC--cEEEE-----EeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEe
Q 021925 51 -----H---------------NGAVWCCDVSRDS--MTLIT-----GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFA 102 (305)
Q Consensus 51 -----~---------------~~~v~~i~~~~~~--~~l~s-----~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~ 102 (305)
| ...|....|+|.+ ..|+. .+.++.+++|.+..+..+.+.. ....-..+.|.
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 1 1456677788843 34443 4567888899888776666555 55556678889
Q ss_pred cCCceEEEeCCcce----eee--eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe--eCCCcEEEEe
Q 021925 103 VGDKLAVITTDPFM----ELN--SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA--GEDAIVRIWD 174 (305)
Q Consensus 103 ~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd 174 (305)
+.|.++++-..... ... ..+.+..+. ...+.....-.++|...+|.|.++.+++. .++-.+.++|
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeec-------ccccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 98887776543211 111 223333332 12223333568899999999999877654 4788999999
Q ss_pred CCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEE-EEeeCCCeeEEEecCCCCcEEEe
Q 021925 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIK-TYVTERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 250 (305)
++.. ....+ ....-+.+.|+|.+++++.++-| |.+-+||......+. .+. .....-+.|+|+++++.++
T Consensus 305 lr~N-l~~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 305 LRGN-LRFYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred cccc-eEEec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-cCCceEeeccCCceEEEec
Confidence 9865 44333 34455678899999999987765 679999987654443 443 3334566899999998887
Q ss_pred e-CCcEEEEEEeehhhhhhh
Q 021925 251 E-PQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 251 ~-~~~~~~~~~~~~~~~~~~ 269 (305)
. +...+....+.+|+....
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CCCcccccCcceEEEEecCc
Confidence 4 333355555777765433
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=3.2e-11 Score=89.61 Aligned_cols=188 Identities=14% Similarity=0.133 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCC-eeE
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA-QLF 88 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~-~~~ 88 (305)
..++.|++.+..++++-.+|.+.+-+...... ++..+.|.-+.....|+. +.+.+.+|+.|+.+..||++..+ .+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 34678889899999999999998665444433 347889999999999987 45688999999999999998332 111
Q ss_pred EEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCC
Q 021925 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGED 167 (305)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 167 (305)
. ..+.|...|.++.-+| .+.++++|+.|
T Consensus 204 ~---------------------------------------------------n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 204 H---------------------------------------------------NSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred e---------------------------------------------------cceeeecceEEEecCCCCCceEEEeccc
Confidence 0 1244667777777775 46799999999
Q ss_pred CcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCC--CEEEEEeCCCeEEEEEcCCceEE-----EEEe-eCCCeeEE
Q 021925 168 AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDARTLELI-----KTYV-TERPVNAV 238 (305)
Q Consensus 168 g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-----~~~~-~~~~v~~~ 238 (305)
..|++||.++ ++++..-. ..+.|..+.++|.- ..|+++-.+| .+|-+.+.+... .... |.+-...-
T Consensus 233 e~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred cceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 9999999994 66665543 45899999999943 3344544455 777776654322 1122 44445555
Q ss_pred EecCCCCcEEEeeCCcEE
Q 021925 239 TMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~ 256 (305)
.|......+++++.-+..
T Consensus 308 DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKK 325 (339)
T ss_pred ccccccceeeeeeccccc
Confidence 665555668887644443
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.7e-10 Score=93.07 Aligned_cols=235 Identities=12% Similarity=0.148 Sum_probs=149.8
Q ss_pred ceEEEEEcCCCCEEEEeeC-----------CCceEEEEcCCCeeeEEecCCCc--ce-EEEEEcCCCcEEEEEeCCCcEE
Q 021925 12 PLTYLKYNKDGDLLFSCAK-----------DHTPTVWFADNGERLGTYRGHNG--AV-WCCDVSRDSMTLITGSADQTAK 77 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~~~~--~v-~~i~~~~~~~~l~s~~~dg~v~ 77 (305)
.|.-+.|||+.+||+|=+. ...+.|||+.+|...+.+....+ .+ .-..||.|++++|--.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 3788999999999998653 25799999999999888875322 22 34689999999987766 4699
Q ss_pred EEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC------------------------
Q 021925 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------------------------ 132 (305)
Q Consensus 78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 132 (305)
|++..+..++..-. ....|....|+|.+.+++.-+...........+..+.....
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 99877644433222 44567888888888888776542211111111111110000
Q ss_pred --------CC-CC--c--eEEEEe---------ccCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCC-C---cEeee
Q 021925 133 --------DQ-GG--E--SVLILK---------GPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTET-G---KLLKE 183 (305)
Q Consensus 133 --------~~-~~--~--~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~---~~~~~ 183 (305)
.. .+ . .+..+. .-...|...+|-|.|+.+++-+. ..++.+|-+.+ . +.+..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 00 00 0 001111 12345677899999988776543 35788888873 2 22333
Q ss_pred eccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCC--ceEEEEEeeCCCeeEEEecCCCCcEEEeeCC
Q 021925 184 SDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDART--LELIKTYVTERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 184 ~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
+. ....+.+.|+|.|++++.+. ..|.+.++|+.- .+.+....| ...+.+.|.|.|+|++++++.
T Consensus 490 ~d-----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 490 LD-----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hc-----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh
Confidence 32 35678899999999987654 578899999874 333333323 346789999999999998643
No 267
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.38 E-value=1.8e-08 Score=77.83 Aligned_cols=225 Identities=14% Similarity=0.062 Sum_probs=145.1
Q ss_pred EEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEc-CCCcEEEEEeCCCcEEEEecCCCCeeEEEee
Q 021925 15 YLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (305)
Q Consensus 15 ~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 92 (305)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+++. +++ .|+.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578998 77777777778999999988776533 33222 6777777 565 45555554 456669988865544443
Q ss_pred ------CCCceEEEEecCCceEEEeCCcceeeee-eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE-Ee
Q 021925 93 ------DSPARSVDFAVGDKLAVITTDPFMELNS-AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SA 164 (305)
Q Consensus 93 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~ 164 (305)
......+++.++|++.++.......... ...++.+... ..+......-...+.++|+|+++.|+ +-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~~~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------GKVTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------SEEEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------CeEEEEecCcccccceEECCcchheeecc
Confidence 2346789999999977665542221111 0333333321 22333344456678999999998776 55
Q ss_pred eCCCcEEEEeCCCCcE----eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CCeeEEE
Q 021925 165 GEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVT 239 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 239 (305)
+..+.|..+++..... .+.+.......+..-.+++..+|++.++....+.|.++|.+ |+.+..+... ..+++++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 6678899999864221 12221111222357889999999988888889999999987 9888888844 6899999
Q ss_pred e-cCCCCcEEEee
Q 021925 240 M-SPLLDHVCIGE 251 (305)
Q Consensus 240 ~-~~~~~~l~~~~ 251 (305)
| -|+.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 9 46767666654
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=3.4e-12 Score=115.14 Aligned_cols=216 Identities=15% Similarity=0.141 Sum_probs=159.6
Q ss_pred eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe--eCCCceEEEEecCC
Q 021925 28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGD 105 (305)
Q Consensus 28 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 105 (305)
+..++...-|..+.+.. .++.+-..|.++.=+|...+.+||+.||.+++|....++.+..++ .+..++.+.|+..|
T Consensus 2186 ~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG 2263 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG 2263 (2439)
T ss_pred ccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC
Confidence 33444444454332222 223345678888889988899999999999999999999888887 45778889999988
Q ss_pred ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee---CCCcEEEEeCCCCcEee
Q 021925 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLK 182 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~ 182 (305)
+.+.++.. ++.+..|... .++....+.|......+.|-. ..+++++ .++.+.+||........
T Consensus 2264 nk~~i~d~-----dg~l~l~q~~-------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2264 NKFGIVDG-----DGDLSLWQAS-------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred Cceeeecc-----CCceeecccC-------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence 87777654 4555555554 466777788988888888875 5566654 46899999975432222
Q ss_pred eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
.+. ..|.+.++++++.|..+.|++|+.+|.|++||++..+.++.+.. ++ ...++++|+..|. ++
T Consensus 2330 ~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~-----ik 2393 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGN-----IK 2393 (2439)
T ss_pred eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccc-----eE
Confidence 222 47999999999999999999999999999999998888777654 44 5678899988887 77
Q ss_pred hhhhhhhhhhhhc
Q 021925 263 LFVLFLDILFYNL 275 (305)
Q Consensus 263 ~~~~~~~~~~~~~ 275 (305)
+|.+....+++++
T Consensus 2394 Iw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTF 2406 (2439)
T ss_pred EEEccccchhhcC
Confidence 7877666555443
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=7.9e-10 Score=89.28 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=142.3
Q ss_pred EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-----------CCcEEEEecC
Q 021925 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-----------DQTAKLWNVE 82 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----------dg~v~vwd~~ 82 (305)
+-+.|||-|.||+|--..| |.+|--++-..++++. |.+ |.-+.|||+.++|+|-+. ...+.|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999987664 7899877666666665 654 899999999999998653 2569999999
Q ss_pred CCCeeEEEee---CCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC----------CCCceE---------
Q 021925 83 TGAQLFTFNF---DSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD----------QGGESV--------- 139 (305)
Q Consensus 83 ~~~~~~~~~~---~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--------- 139 (305)
+|.....+.. +.. -.-+.|+.++++++....+.+.+...-....+...... .....+
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 9998888874 112 23468999999999877655554443322222111000 000000
Q ss_pred ----------------EEEeccCCCeeEEEEcCCCCEEEEee----------CCCcEEEEeCCCCc-EeeeeccccCCcc
Q 021925 140 ----------------LILKGPQGRINRAVWGPLNRTIISAG----------EDAIVRIWDTETGK-LLKESDKETGHKK 192 (305)
Q Consensus 140 ----------------~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 192 (305)
+...-+.-.=..+.|-.+|.+|+.-- .-..+.|+.++... ++..+ ....
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v----elke 446 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV----ELKE 446 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee----ecch
Confidence 00001111112244555666665321 11124444444332 22222 2567
Q ss_pred ceEEEEEcCCCCEEEEEeC---CCeEEEEEcCC-c---eEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 193 TITSLAKAADGSHFLTGSL---DKSAKLWDART-L---ELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
.|...+|-|.|+.+++-+. ..++.+|.+++ . +.+..+.. ...+.+.|+|.|++++++.
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEE
Confidence 8889999999988776543 35688888773 2 23333332 4568999999999998874
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=7e-11 Score=89.78 Aligned_cols=208 Identities=16% Similarity=0.232 Sum_probs=134.4
Q ss_pred ccceEEEEEcCCCC--EEEEeeCCCceEEEEcCCCeee-----------------------------------EE-ecCC
Q 021925 10 ERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERL-----------------------------------GT-YRGH 51 (305)
Q Consensus 10 ~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~~~~-----------------------------------~~-~~~~ 51 (305)
.+.|+.+.|.++++ .++..+.|.+|++|.+...... +. -.+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35688999988654 6777788999999977532110 00 1368
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe---------eCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---------FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (305)
Q Consensus 52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (305)
.-.|.+|.++.|+..++++. |=.|.+|+++-......+- ...-|++..|+|....+++-+. ..+.+
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS----SKGtI 238 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS----SKGTI 238 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec----CCCcE
Confidence 88999999999999988864 5789999987443322222 2234778888885543333221 13445
Q ss_pred EEEEeecccC----------CCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcEeeeeccccC--
Q 021925 123 HVKRIARDPA----------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETG-- 189 (305)
Q Consensus 123 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~-- 189 (305)
++-+++.... ...+....-+.+--..|..+.|+++|+|+++-.. -+|++||+. ..+++..++....
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 5555442211 1111112222333457889999999999987654 689999994 4566666552110
Q ss_pred -------Ccc---ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925 190 -------HKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (305)
Q Consensus 190 -------~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 223 (305)
... .-..++|+.++..++||+.....++++...|
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 011 2245789999999999999999999996544
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.35 E-value=3.6e-11 Score=93.00 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=118.5
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe----eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ----LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (305)
....+..++.++++|++..+....++++..... ......+.....+.+..+.....++.. .+.....++..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dk-----agD~~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADK-----AGDVYSFDILS 138 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEee-----cCCceeeeeec
Confidence 344556678889999988888877887765443 333335556666666665555444432 12222222221
Q ss_pred ccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (305)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 209 (305)
... .....+-+|-+.++.++++||+++|+++..|..|++-....-..+..+.. +|..-|..++.-++ ..|+++
T Consensus 139 ~~~----~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~~-~~LlS~ 211 (390)
T KOG3914|consen 139 ADS----GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTDN-YLLLSG 211 (390)
T ss_pred ccc----cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeeccC-ceeeec
Confidence 111 33445678999999999999999999999999999988876666666653 79999999998865 458999
Q ss_pred eCCCeEEEEEcCCceEEEEEe
Q 021925 210 SLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 210 ~~dg~i~iwd~~~~~~~~~~~ 230 (305)
|.|+++++||+++|+.+.++.
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCCcEEEEecccCCcccccc
Confidence 999999999999999887765
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.33 E-value=1.1e-09 Score=80.65 Aligned_cols=223 Identities=9% Similarity=-0.017 Sum_probs=142.0
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeC-CCceEE
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSV 99 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~ 99 (305)
.+||.|+..|...+|...+.+... ....|...|+-+.=.. ....+..++.|.++++.+++.+........+ -...++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 479999999999999988665433 2333443332211111 2234666788899999988755433333322 348899
Q ss_pred EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 021925 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178 (305)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 178 (305)
+++++++++++.++... +..+.+.... ..... ......+.-.+..|+.....+|++.+||++.|||++..
T Consensus 165 ~~snd~~~~~~Vgds~~-----Vf~y~id~~s----ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRR-----VFRYAIDDES----EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred EEcCCCceEEEecCCCc-----ceEEEeCCcc----ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 99999999998876332 2222222111 11111 23334455677889999999999999999999999974
Q ss_pred cEeee-ec-cccCCccceEEEEEcCCCC--EEEEEeCCCeEEEEEcCCceEEEEEeeC---------CCeeEEEecCCCC
Q 021925 179 KLLKE-SD-KETGHKKTITSLAKAADGS--HFLTGSLDKSAKLWDARTLELIKTYVTE---------RPVNAVTMSPLLD 245 (305)
Q Consensus 179 ~~~~~-~~-~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~~ 245 (305)
..... .. ....|.+.++.+.|++-|. +|+..-.-+.+.+.|+++++..+.+... ..+....|+.++.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 43221 11 1235889999999998664 3555556788999999998766655421 1255556666666
Q ss_pred cEEEeeCCc
Q 021925 246 HVCIGEPQT 254 (305)
Q Consensus 246 ~l~~~~~~~ 254 (305)
.+.+++...
T Consensus 316 s~~v~~e~~ 324 (344)
T KOG4532|consen 316 SNDVKNELQ 324 (344)
T ss_pred ccccccchh
Confidence 666555443
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.33 E-value=2.7e-09 Score=79.62 Aligned_cols=192 Identities=15% Similarity=0.123 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-------CCcceEEEEEcCC------CcEEEEEeCCCcEEEE
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRD------SMTLITGSADQTAKLW 79 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~------~~~l~s~~~dg~v~vw 79 (305)
=+.++||||+..||.+...|+|+++|+.. ..+..+.. -...|.++.|.+- ...|++-..+|.++-+
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 35689999999999999999999999874 33333332 2356788888652 1256666778888877
Q ss_pred ecC-----CCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925 80 NVE-----TGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (305)
Q Consensus 80 d~~-----~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (305)
-+. ..+...++. .+..|.++.++|..+++++++.....-.. -+.....++
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~---------------------s~a~~~GLt 183 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM---------------------SKASSCGLT 183 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc---------------------ccccccCce
Confidence 653 223444544 46689999999999988887642221000 000111111
Q ss_pred EEEEc---CCCCEEEEeeCCCc------EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 151 RAVWG---PLNRTIISAGEDAI------VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 151 ~~~~~---~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
+-..- |..+. ++...|+. -.+|.+-+.+..... ......|..|..||||+.||+...+|.|.+|++.
T Consensus 184 aWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~---~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 184 AWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQ---GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred EEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeecc---ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 11111 11111 12222211 123333222211111 1356789999999999999999999999999999
Q ss_pred CceEEEEEe
Q 021925 222 TLELIKTYV 230 (305)
Q Consensus 222 ~~~~~~~~~ 230 (305)
+.++...+.
T Consensus 260 sL~~~~~W~ 268 (282)
T PF15492_consen 260 SLRLQRSWK 268 (282)
T ss_pred cchhhcccc
Confidence 998888876
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=9.1e-11 Score=97.49 Aligned_cols=237 Identities=11% Similarity=0.110 Sum_probs=159.3
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
+|.||.+.|.-+.|+.+.+.|-|+..+|.|.+|-+-.++....+. ..++-|.+++|..||..+.....||.|.+=.++
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 588999999999999999999999999999999988776443332 345779999999999999999999999887776
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-CCce----EEEEeccCCCeeEEEEc-
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGES----VLILKGPQGRINRAVWG- 155 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~i~~~~~~- 155 (305)
..+ +.--. .......+.|++|.+.++..-.. +...+++........ .... ...+......|..+.|.
T Consensus 146 GNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~an-----ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 146 GNR-IWGKELKGQLLAHVLWSEDLEQALFKKAN-----GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred cce-ecchhcchheccceeecccHHHHHhhhcC-----CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence 433 22222 23334578888887766654431 222222211110000 0000 00111112224444443
Q ss_pred -------CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---------eEEEEE
Q 021925 156 -------PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---------SAKLWD 219 (305)
Q Consensus 156 -------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~iwd 219 (305)
|+...|+.+..+|.+.|..-.+......+. ..-.+..+.|+++|..|+.++.|. .|.++.
T Consensus 220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 577899999999999887655443333332 336788899999999999988642 466665
Q ss_pred cCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeC
Q 021925 220 ARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 220 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
.-|+.+.+++ .+..|++++|-..|-.++.+-+
T Consensus 296 -p~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 296 -PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred -cchhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence 3477788888 6778999999998877777653
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=3e-11 Score=90.69 Aligned_cols=245 Identities=15% Similarity=0.170 Sum_probs=146.2
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----eeEEecCCC------------cceEEEEEcCCC--cEEEE
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN------------GAVWCCDVSRDS--MTLIT 69 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~--~~l~s 69 (305)
..+.|+++.|...|.+|++|...|.|.++..+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999999999999755422 223344443 467888887754 35666
Q ss_pred EeCCCcEEEEecCCCCe--eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-EeccC
Q 021925 70 GSADQTAKLWNVETGAQ--LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQ 146 (305)
Q Consensus 70 ~~~dg~v~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 146 (305)
.+.|++|++|.+..... +..-.....+ .+...|.+ ... ..+....+..........+.+. -..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~---~~~~~g~~-~s~--------~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSF---HSPMGGPL-TST--------KELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccccccc---ccccCCCc-CCH--------HHhhcccccccceEEEeccceeccccce
Confidence 77899999999865422 1111111111 00001100 000 0000000000000000012222 25678
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC-----ccceEEEEEcCCC-CEEEEEeCCCeEEEEEc
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-----KKTITSLAKAADG-SHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~ 220 (305)
-.|.++.+..|...++++ .|=.|.+|++........+....+| ...|++..|+|.. ..+.-.++.|.|++-|+
T Consensus 173 yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 173 YHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 889999999998877766 4678999998754332222211123 3468889999954 45667778999999999
Q ss_pred CCce------EEEEEe-----------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 221 RTLE------LIKTYV-----------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 221 ~~~~------~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
+... .+.... .-+.|..+.|+++|+++++-+ +.++++|+..++...
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd------yltvkiwDvnm~k~p 314 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD------YLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec------cceEEEEecccccCC
Confidence 8421 111111 123578899999999998744 334888887776543
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=2e-09 Score=85.55 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=132.5
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC-cEEEEecCCCCeeEEEeeCCCceEE
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-TAKLWNVETGAQLFTFNFDSPARSV 99 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~v~~~ 99 (305)
+|.+++..| .|...|.+...+-.++ + +|.+.|.-..+..+++-++.|..|| .+-|+|.++++...
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr----------- 396 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR----------- 396 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-----------
Confidence 677888776 5666776654444332 2 4777899888988888899999999 89999988765432
Q ss_pred EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc
Q 021925 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179 (305)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 179 (305)
+.+.-+.|.++..+|+|++++.+.....+.+.|+.+++
T Consensus 397 ------------------------------------------~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 397 ------------------------------------------IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred ------------------------------------------eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 23445678889999999999999999999999999987
Q ss_pred EeeeeccccCCccceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 180 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
....-+ ...+-|+.++|+|+++++|-+--+| .|+++|+..++........+.=.+-+|.|++++|..-+
T Consensus 435 v~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 VRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEecc---cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 654433 4567899999999999999877665 59999999888766554444446778999999877644
No 277
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=5.7e-10 Score=90.51 Aligned_cols=145 Identities=14% Similarity=0.197 Sum_probs=119.0
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceE
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS 98 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~ 98 (305)
+...++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..|.|++.|+.+..|+..+.+..+.+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-------- 140 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-------- 140 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee--------
Confidence 34467778889999999999999888776 59999999999999899999999999999998876655443
Q ss_pred EEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 021925 99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178 (305)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 178 (305)
+..+..+.+++.+||++.+++++ +.|++||++++
T Consensus 141 --------------------------------------------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k 174 (541)
T KOG4547|consen 141 --------------------------------------------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK 174 (541)
T ss_pred --------------------------------------------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence 33345567789999999999988 78999999999
Q ss_pred cEeeeeccccCCccceEEEEEcCC-----CCEEEE-EeCCCeEEEEEcCC
Q 021925 179 KLLKESDKETGHKKTITSLAKAAD-----GSHFLT-GSLDKSAKLWDART 222 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~iwd~~~ 222 (305)
+.+..+. +|.++|+++.|-.+ |.++++ ...+.-+.+|-.+.
T Consensus 175 evv~~ft---gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 EVVITFT---GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEec---CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999998 99999999999876 566554 44455677776554
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.25 E-value=1.3e-08 Score=91.53 Aligned_cols=232 Identities=14% Similarity=0.121 Sum_probs=150.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEE----EcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVW----FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
.+.|.++.+-++...++.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+.++.+++|.+.+-. .+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FD 152 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ce
Confidence 4579999999999999999999999999 444332 22223346789999999999999999999998887532 10
Q ss_pred eeEE-------------------------------------------------EeeCCCceEEEEecCCceEEEeCCcce
Q 021925 86 QLFT-------------------------------------------------FNFDSPARSVDFAVGDKLAVITTDPFM 116 (305)
Q Consensus 86 ~~~~-------------------------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~ 116 (305)
.+.. +.....-..++|..||.++++..-...
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 0000 002224456788889999888753111
Q ss_pred ee-eeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCcEeeeecccc-CCc
Q 021925 117 EL-NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKET-GHK 191 (305)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~~ 191 (305)
.- ...+++|+- .+......+.-.+--.+++|.|.|++||+.-. ...|.+|.. +|-.-..+.... ...
T Consensus 233 ~~~~R~iRVy~R-------eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 233 TGSRRVIRVYSR-------EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEE 304 (928)
T ss_pred CCceeEEEEECC-------CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCC
Confidence 11 222222222 12222222333344457899999999998764 356777774 444444443221 346
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE--EEEEe--eCCCeeEEEecCCCCc-EEEeeC
Q 021925 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYV--TERPVNAVTMSPLLDH-VCIGEP 252 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~-l~~~~~ 252 (305)
..|..+.|++|+..||..-.|. |.+|-..+..- .+++. ....+..+.|+|...+ |.+.+.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 6899999999999999977665 99999887642 22333 3445666999997655 555544
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=1.3e-07 Score=86.82 Aligned_cols=237 Identities=12% Similarity=0.018 Sum_probs=139.3
Q ss_pred EEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecC-C-------------CcceEEEEEcCCCcEEEEEe-CCCcEE
Q 021925 14 TYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRG-H-------------NGAVWCCDVSRDSMTLITGS-ADQTAK 77 (305)
Q Consensus 14 ~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~-------------~~~v~~i~~~~~~~~l~s~~-~dg~v~ 77 (305)
..++++++ ++.+++-+.++.|+++|.. ++.+..+.+ . -.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 6677777778899999975 444443332 1 12358899999887666654 457799
Q ss_pred EEecCCCCeeEEEee------------------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---CCCC
Q 021925 78 LWNVETGAQLFTFNF------------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---DQGG 136 (305)
Q Consensus 78 vwd~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 136 (305)
++|..++. +.++.. -.....++++|++..++++... ...+..++...... ...+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~----~~~I~v~d~~~g~v~~~~G~G 724 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG----QHQIWEYNISDGVTRVFSGDG 724 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC----CCeEEEEECCCCeEEEEecCC
Confidence 99987654 333321 1234678999854444433221 11122221110000 0000
Q ss_pred ce-----EEEEeccCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeec----------ccc--------CCcc
Q 021925 137 ES-----VLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESD----------KET--------GHKK 192 (305)
Q Consensus 137 ~~-----~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~----------~~~--------~~~~ 192 (305)
.. .......-.....++++|+++.|+ +-+.++.|++||+.++....... ... ..-.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 00 000001123456799999998555 55567999999998765321100 000 0112
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------------CCeeEEEecCCCCcEEEeeCCcEE
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------RPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
....++++++|+.+++-+.+++|++||..++......... .....++++++|+.+++.+.++.+
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 3468899999998888889999999999887665433211 246789999999876666666653
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=3.7e-09 Score=84.62 Aligned_cols=226 Identities=20% Similarity=0.236 Sum_probs=152.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---------------
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--------------- 73 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--------------- 73 (305)
-.-++..++|||.|.+|++.... .|.+|..+.+..+.++. | ..|..+.|+|++++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45578899999999999987655 68999988877666665 4 358999999999999986543
Q ss_pred CcEEEEecCCCCeeEEEeeCCC---ce-EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925 74 QTAKLWNVETGAQLFTFNFDSP---AR-SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (305)
Q Consensus 74 g~v~vwd~~~~~~~~~~~~~~~---v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (305)
..+.+||+.++..+..+..... .. -+.|+.++++++-... ..+.+.++..... ..+...++ ...|
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~------~sl~i~e~t~n~~---~~p~~~lr--~~gi 176 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG------SSLYIHEITDNIE---EHPFKNLR--PVGI 176 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc------CeEEEEecCCccc---cCchhhcc--ccce
Confidence 3599999999999988873332 33 6778888877665432 3344444321111 11111111 3567
Q ss_pred eEEEEcCCC--CEEEE-----eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-----------C
Q 021925 150 NRAVWGPLN--RTIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-----------L 211 (305)
Q Consensus 150 ~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~ 211 (305)
....|+|.+ ..|+. .+.++++++|.+..++.+.+.... ...-..+.|.+.|++|++-- .
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf---k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF---KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE---eecccEEEEecCCceEEEEEEEeeecccceec
Confidence 788889874 33442 456789999999877666544321 12224578889888865421 1
Q ss_pred CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 212 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 212 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
+..+++++++.....-.....++|..++|.|.++.+++.+
T Consensus 254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred cceEEEEeecccccceeccccccceeeeecccCCceeEEe
Confidence 3568889888444433334678999999999998877765
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=8.9e-08 Score=76.30 Aligned_cols=203 Identities=12% Similarity=0.039 Sum_probs=122.6
Q ss_pred EEEEEcCCCCEEEEee-C-CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-
Q 021925 14 TYLKYNKDGDLLFSCA-K-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF- 90 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~-~-dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~- 90 (305)
..++++|||++|+... . +..|-+.|+.+++.+.++.- .+...-...+++..+ +-+.||......+.+.......
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEee
Confidence 4788999999998765 3 68999999999999988874 222222333322222 2233444444333222111111
Q ss_pred -ee--C--CCc-eEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-------eccCCCeeEEEEcC
Q 021925 91 -NF--D--SPA-RSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-------KGPQGRINRAVWGP 156 (305)
Q Consensus 91 -~~--~--~~v-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~ 156 (305)
.. . .++ ..-.+.+ ++..++++..+.+ ...++..... ...+....+ .-..+.+.-++++|
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V------~~id~~~~~~-~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKI------FQIDLSSGDA-KFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecCCeE------EEEecCCCcc-eecceeeeccccccccccCCCcceeEEEcC
Confidence 11 1 000 0113455 7777777765322 2222111000 000111111 01233444599999
Q ss_pred CCCEEEEee----------CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEEEcCCce
Q 021925 157 LNRTIISAG----------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLE 224 (305)
Q Consensus 157 ~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~ 224 (305)
+++.++... ..+.|.++|..+++.+..+. -...+..++++||++ .|++.+ .++.|.+.|..+++
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 998888743 12579999999999999886 456889999999999 777666 57889999999999
Q ss_pred EEEEEe
Q 021925 225 LIKTYV 230 (305)
Q Consensus 225 ~~~~~~ 230 (305)
.++++.
T Consensus 334 ~i~~i~ 339 (352)
T TIGR02658 334 ELSSVN 339 (352)
T ss_pred EEeeec
Confidence 999884
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=8.6e-10 Score=83.93 Aligned_cols=210 Identities=16% Similarity=0.192 Sum_probs=142.8
Q ss_pred eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe-cCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeee
Q 021925 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN-VETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELN 119 (305)
Q Consensus 43 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 119 (305)
..+..+++|.+.|+....-|..+-+++.+.|.+++||- .+.++.-..+. .+.+++++.+.+....++++-+..
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng---- 90 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG---- 90 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc----
Confidence 34567789999999998889888899999999999994 44555444444 788899999999999888876522
Q ss_pred eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC---------------------
Q 021925 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--------------------- 178 (305)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------------- 178 (305)
.+...... ..-+.....+....|...+..+.|+.....+++.+.|..+.---.+.+
T Consensus 91 -tvtefs~s--edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~ 167 (404)
T KOG1409|consen 91 -TVTEFALS--EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY 167 (404)
T ss_pred -eEEEEEhh--hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence 22111111 111222334445566666666666655555555555543322111111
Q ss_pred --------------------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE--EEEeeCCCee
Q 021925 179 --------------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVTERPVN 236 (305)
Q Consensus 179 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~v~ 236 (305)
.++.. ..+|...+.+++|.+....|.+|..|..+.+||+--.+-+ ....|...|.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~---~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITT---FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEecccccceEEEEEeecCCceEEE---EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 11222 2379999999999999999999999999999998644333 3333788899
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
.+...+--+.+.+++.|+.+..+...
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEecc
Confidence 98888888889999999886555433
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.21 E-value=2.8e-08 Score=89.54 Aligned_cols=238 Identities=14% Similarity=0.138 Sum_probs=152.3
Q ss_pred cceEEEEEcCCCCEEEEeeC--CC--ceEEEEcCCC---eeeEEec-----CCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAK--DH--TPTVWFADNG---ERLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~--dg--~v~iw~~~~~---~~~~~~~-----~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
..+...+|.+....+..+.. .. .|.+-..... +.+..+. ...+.|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35777888876554433322 22 2333322222 2333333 23468999999999999999999999999
Q ss_pred E----ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec---ccCC------------------
Q 021925 79 W----NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR---DPAD------------------ 133 (305)
Q Consensus 79 w----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------ 133 (305)
. +..+......-..+..+.+++|+||+..++..++....+.-......+.. ....
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF 181 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence 9 66666555555688999999999999999888754222211111111100 0000
Q ss_pred --CCCceE--------------EEEeccCCCeeEEEEcCCCCEEEEeeC---C---CcEEEEeCCCCcEeeeeccccCCc
Q 021925 134 --QGGESV--------------LILKGPQGRINRAVWGPLNRTIISAGE---D---AIVRIWDTETGKLLKESDKETGHK 191 (305)
Q Consensus 134 --~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~ 191 (305)
..++.. ..+. ....-..++|-.||.++|+.+. . ..+++|+.. |......+. -.
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~---v~ 256 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP---VD 256 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc---CC
Confidence 001100 0111 3445667999999999998774 3 479999965 665555542 23
Q ss_pred cceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCCCCcEEEeeCCc
Q 021925 192 KTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYV-----TERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
+--.+++|.|.|++||+... ...|.+|. ++|.....|. ....|..++|++++..|++--.+.
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC
Confidence 33456899999999998775 45688887 5566655555 345799999999999999987666
No 284
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.12 E-value=1e-06 Score=67.99 Aligned_cols=237 Identities=13% Similarity=0.050 Sum_probs=150.4
Q ss_pred EEEEEcC-CCCEEEEeeCCCc-eEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeC-----CCcEEEEecC-C
Q 021925 14 TYLKYNK-DGDLLFSCAKDHT-PTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSA-----DQTAKLWNVE-T 83 (305)
Q Consensus 14 ~~~~~~~-~~~~l~s~~~dg~-v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~-----dg~v~vwd~~-~ 83 (305)
..++.+| .+..++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4678889 5566667766664 6789999999888776544332 24679999999988633 5889999998 5
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeee----EEEEEeec---ccCCCCCceEEE--E--eccCCCeeE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSA----IHVKRIAR---DPADQGGESVLI--L--KGPQGRINR 151 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~--~--~~~~~~i~~ 151 (305)
-+.+.++. +.-....+.+.|++..++++..+...-... +++..+.. ......++.+.. + ..|+.+|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 56666666 555677889999998888876543222111 11100000 000123444443 3 347788999
Q ss_pred EEEcCCCCEEEEeeCCC-------cEEEEeCCCCcEeeeeccc----cCCccceEEEEEcCCCCEEEEEe-CCCeEEEEE
Q 021925 152 AVWGPLNRTIISAGEDA-------IVRIWDTETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGS-LDKSAKLWD 219 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 219 (305)
+++.++|..++..-..| -|.+++.. +.+..+... ..-...+-++++++++..+++.+ .-+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 99999987555443333 24444432 323322211 13356789999999998775555 578899999
Q ss_pred cCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 220 ARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
..+++.+....... +..++-.+++ +++ +++.+.
T Consensus 246 ~~tg~~~~~~~l~D-~cGva~~~~~-f~~-ssG~G~ 278 (305)
T PF07433_consen 246 AATGRLLGSVPLPD-ACGVAPTDDG-FLV-SSGQGQ 278 (305)
T ss_pred CCCCCEeeccccCc-eeeeeecCCc-eEE-eCCCcc
Confidence 99999988765332 5667777776 444 444444
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=1.7e-07 Score=86.10 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEecCC-----------------CcceEEEEEcC-CCcEEEEEeC
Q 021925 12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGH-----------------NGAVWCCDVSR-DSMTLITGSA 72 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~-----------------~~~v~~i~~~~-~~~~l~s~~~ 72 (305)
....++++++++.|+.+. .++.|+++|..++. +.++.+- -....+++++| ++..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 357889999888666554 45789999987654 3333210 01236899999 5666677777
Q ss_pred CCcEEEEecCCCCeeEEEe----------------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC----
Q 021925 73 DQTAKLWNVETGAQLFTFN----------------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---- 132 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 132 (305)
++.|++||..++... .+. .-.....++++|++..++++... ...+..+++.....
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~----n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE----SSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC----CCeEEEEECCCCcEEEEE
Confidence 899999998776432 111 01245678999998866555432 22333333221100
Q ss_pred ---CCCCceEEEEe--------ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc----------cCCc
Q 021925 133 ---DQGGESVLILK--------GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----------TGHK 191 (305)
Q Consensus 133 ---~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~ 191 (305)
.........+. ........++++++|+.+++-+.++.|++||..++......... .+.-
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 00000000000 01123468899999998888888999999999877654322110 0122
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 225 (305)
.....++++++|+.+++-+.+++|++||+++++.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 3577899999999888888999999999998765
No 286
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.7e-09 Score=85.22 Aligned_cols=241 Identities=17% Similarity=0.172 Sum_probs=165.2
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCC---CeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCCC
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETG 84 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~~ 84 (305)
|.+.|+.+..+ -.+++.+++.||.++.|.-.. -+.+..+..|.+.|.+++.+-++.++.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77888887655 456999999999999996432 2445666789999999999999999999887 999999999987
Q ss_pred CeeEEEeeCCCceEEEEec--CCc--eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 85 AQLFTFNFDSPARSVDFAV--GDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
..+.-++.......+.|.. +.. .+++.... .+.+.+.+-. ....+....-+-|..+|.++.+.|.+..
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~----sg~i~VvD~~----~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFK----SGKIFVVDGF----GDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeeccc----CCCcEEECCc----CCcCccceecccccCceEEEEeeccccc
Confidence 7766555444333333332 211 22222110 1111111111 1112344455678999999999999999
Q ss_pred EEEeeCCCcEEEEeCCC------CcEeeeec------cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925 161 IISAGEDAIVRIWDTET------GKLLKESD------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~------~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 228 (305)
+++....|.|.-|.... .+....+. .........+++.|+|++..+.+-+.|..|++++.++++.++.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 99999999999999873 11111111 1112345678999999999999999999999999998876554
Q ss_pred Eee---------------------------------C-CCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925 229 YVT---------------------------------E-RPVNAVTMSPLLDHVCIGEPQTIKFM 258 (305)
Q Consensus 229 ~~~---------------------------------~-~~v~~~~~~~~~~~l~~~~~~~~~~~ 258 (305)
+.. + ..-..+.|...|++|+-|+--|..++
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvi 302 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVI 302 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEE
Confidence 430 0 11356678999999998887776543
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.11 E-value=4e-09 Score=77.42 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
|+.+.++.+- .|+++..++.+......++. +.+.+..|.++-.+-+.+--++.+++++.||.+.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5566665443 56666666555544333222 2223333333322222233456789999999999999
Q ss_pred cCCCCeeE-EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 81 VETGAQLF-TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 81 ~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.+.-..+. .+. ....-.+.++...+..+....-+.....+....+.+... +....-......+++++-+|..
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~------~t~~~~~~~~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI------KTLIPSKKALDAVTALCSHPAQ 191 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccc------ccccccccccccchhhhCCccc
Confidence 76521111 111 001111122223333333332222222223333333211 1111111222348899999976
Q ss_pred C-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 021925 159 R-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 159 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+ .+++|+.||.+-+||.++......+. ..|+.+++.+-|+| ++..|+++++||.+..||..+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l--~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLL--KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHH--HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5 56678889999999999875443332 37999999999999 667899999999999999774
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.10 E-value=3.6e-10 Score=59.97 Aligned_cols=39 Identities=33% Similarity=0.618 Sum_probs=36.8
Q ss_pred CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
++++.++++|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.10 E-value=7.5e-08 Score=74.13 Aligned_cols=189 Identities=19% Similarity=0.209 Sum_probs=126.4
Q ss_pred EEEcCCCCEEEEee-----CCCceEEEEcC-CCeeeEEecCCCcceEEEEEcCCCcEEEEEe------------------
Q 021925 16 LKYNKDGDLLFSCA-----KDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGS------------------ 71 (305)
Q Consensus 16 ~~~~~~~~~l~s~~-----~dg~v~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~------------------ 71 (305)
-.||+||++|++.- ..|.|-|||.. +.+.+.++..|.-.-..+.+.|||+.|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 36999999999863 35899999998 6678888888877778899999998887763
Q ss_pred CCCcEEEEecCCCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE----
Q 021925 72 ADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---- 142 (305)
Q Consensus 72 ~dg~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 142 (305)
++-++...|..+|+.+.... +...++.+++.+++..++..-.........--+..... ......+
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~------g~~~~~~~~p~ 209 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR------GGALRLLPAPE 209 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC------CCcceeccCCh
Confidence 22446667778888877755 34578999999998887765322111111111111110 1111111
Q ss_pred ---eccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 143 ---KGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 143 ---~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
..-.+.+-+|++++++..+++.+ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.+..
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCC-CccEEE
Confidence 23346788999999998876555 57899999999999887764 3345566666666 555544 454333
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=8.1e-10 Score=84.17 Aligned_cols=164 Identities=10% Similarity=0.156 Sum_probs=115.4
Q ss_pred EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCC
Q 021925 26 FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD 105 (305)
Q Consensus 26 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 105 (305)
++.+.+-.|-+-|+++|-. +.+. .++.|.++.|...++++..|..+|.|...|++....-
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------------------ 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------------------ 287 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------------------
Confidence 4445566777778777643 3343 5677888999887889999999999999998855110
Q ss_pred ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcE---e
Q 021925 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKL---L 181 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~ 181 (305)
.+.+.+ .--|.+.|+++..-. ++++|++.+.+|+|++||++.-++ +
T Consensus 288 -----------------------------~~~~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V 337 (425)
T KOG2695|consen 288 -----------------------------NGWCAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV 337 (425)
T ss_pred -----------------------------CCcceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccce
Confidence 011111 123667777777665 678899999999999999997766 6
Q ss_pred eeeccccCCccceE--EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-----CeeEEEecC
Q 021925 182 KESDKETGHKKTIT--SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAVTMSP 242 (305)
Q Consensus 182 ~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~ 242 (305)
.+++ +|...-. -+...+....+++++.|...+||.++++..+.++.... .+.++++..
T Consensus 338 ~qYe---GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 338 MQYE---GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeee---cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 6665 5543322 23345667788999999999999999999999887332 345556543
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.4e-10 Score=98.66 Aligned_cols=200 Identities=16% Similarity=0.159 Sum_probs=141.9
Q ss_pred Cce-EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC--cEEE
Q 021925 2 RPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKL 78 (305)
Q Consensus 2 ~~~-~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~v~v 78 (305)
|+. .++.|...-+|++|+-+.++|+.|+-.|.|+++++.+|.......+|.++|+-+.=+.+|..+++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 454 4788999999999999999999999999999999999999999999999999999998998777655432 4678
Q ss_pred EecCC-CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 79 WNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 79 wd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
|++.+ +...+++. .-.++.|+..
T Consensus 1172 W~~~s~~~~~Hsf~--------------------------------------------------------ed~~vkFsn~ 1195 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD--------------------------------------------------------EDKAVKFSNS 1195 (1516)
T ss_pred hccccccCcccccc--------------------------------------------------------ccceeehhhh
Confidence 98753 22222221 1223555554
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeec-cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 236 (305)
...-+.|+......+||++++.++.++. ...+....-+...|+|+..+++ .|| -+||.+..+.++.|..-.---
T Consensus 1196 ~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~ 1270 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG 1270 (1516)
T ss_pred HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc
Confidence 4444455555678999999988877643 2223334457788999888766 466 579999887777776222223
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
.-.|+|.|.-++.- ..+|++....++
T Consensus 1271 ~G~FHP~g~eVIIN----------SEIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1271 GGGFHPSGNEVIIN----------SEIWDMRTFKLL 1296 (1516)
T ss_pred cccccCCCceEEee----------chhhhhHHHHHH
Confidence 34688988777664 456766655554
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=4.5e-10 Score=90.93 Aligned_cols=168 Identities=20% Similarity=0.307 Sum_probs=122.3
Q ss_pred eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEE
Q 021925 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (305)
Q Consensus 45 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (305)
+..+.+|...|..++-..+.+-+++++.|++|++|.++...--.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------------------ 771 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------------------ 771 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------------------------------
Confidence 45567899999998887788899999999999999987431100
Q ss_pred EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc--cceEEEEEcCC
Q 021925 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAAD 202 (305)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~ 202 (305)
....+...+..|+.+|.++.|-.+.++++++ ||.|++||.--++++.+......|. +.|.++. +-+
T Consensus 772 ---------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~ 839 (1034)
T KOG4190|consen 772 ---------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVD 839 (1034)
T ss_pred ---------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCc
Confidence 1123455678899999999999888888765 6899999998888777654332222 2233332 224
Q ss_pred CCEEEEE-eCCCeEEEEEcCCceEEEEEe------eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 203 GSHFLTG-SLDKSAKLWDARTLELIKTYV------TERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 203 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
...+..| +...+|+++|.+.++-..+++ ...-+.+++..|.|+.+++|-++|......
T Consensus 840 ~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 840 RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 4455444 678999999999988777776 123478999999999999998777754444
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=3.4e-08 Score=83.30 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=140.0
Q ss_pred EecccccceEEEEEcCCC------------CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC---CC-cEEE
Q 021925 5 LMKGHERPLTYLKYNKDG------------DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DS-MTLI 68 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~------------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~l~ 68 (305)
.+.-|...|+.+.|.|-. -.||++.-.|.|.+||...+..+..++.|.+++..++|-+ +. ..|+
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence 356788999999998731 2567777789999999999999899999999999999977 33 3566
Q ss_pred EEeCCCcEEEEecCCCCeeEEEeeCCCc-eEEEEecCC-ceE-EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 69 TGSADQTAKLWNVETGAQLFTFNFDSPA-RSVDFAVGD-KLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
.-....++.+|+..+|+...+......+ .|+.+.|-+ +.+ +.+..+..... ..+........++..+.-..|
T Consensus 130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~-----~~l~~sep~~pgk~~qI~sd~ 204 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC-----KDLGLSEPDVPGKEFQITSDH 204 (1062)
T ss_pred EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE-----eccCCCCCCCCceeEEEecCc
Confidence 6666789999999999999888744444 457777732 222 22222211111 111111112222222222222
Q ss_pred CC-------------------------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925 146 QG-------------------------RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200 (305)
Q Consensus 146 ~~-------------------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 200 (305)
.. ....++|+|.-+.++.......+.++|++-..++..... ..+.+.-+.+-
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~vl 281 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDVL 281 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEec
Confidence 21 012457788877666666778899999998888887763 33444455666
Q ss_pred CCC--CEEEEEeCCCeEEEEEcCC
Q 021925 201 ADG--SHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 201 ~~~--~~l~~~~~dg~i~iwd~~~ 222 (305)
|++ ..|++.-.||.+.+|--+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeec
Confidence 654 5699999999999997554
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.9e-08 Score=84.93 Aligned_cols=186 Identities=16% Similarity=0.202 Sum_probs=130.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
..++|++++ ++.++-|+-+|.|++.+.+ +.. .+...|+.. ..+|.+++||+.||+|.|-.+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 345566665 5789999999999999865 444 344445544 568999999999999999999999999999
Q ss_pred eeCCCceEEEEecC-----CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 91 NFDSPARSVDFAVG-----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 91 ~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
....++.+++++|+ .+.+++++.....+... .+. ..+....+....++|.++.|. |+++|-++
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er--------~wl--gnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSER--------NWL--GNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcceEEEehh--------hhh--cCccceeeecCccceEEEEec--CcEEEEec
Confidence 99999999999997 44555555432221111 000 011112466778999999997 78899888
Q ss_pred CCCcEEEEeCCCCcEeeeeccccC---CccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 166 EDAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
.+| |++||+.+++.+..++.... .......+.|.++. .|+.|= ..+|+|..++
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence 777 89999999988877764321 11223456777654 455554 4468888777
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.3e-08 Score=77.98 Aligned_cols=241 Identities=12% Similarity=0.168 Sum_probs=140.7
Q ss_pred EecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. ++|+.|-.+|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4667889999999999776 7888999999999999999999888887 789999998755 577788889999999998
Q ss_pred CCCeeE-EEe---eCCCceEEEEec------CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925 83 TGAQLF-TFN---FDSPARSVDFAV------GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 83 ~~~~~~-~~~---~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (305)
..+... .+. ...++..++.-+ .+.+++.... ....|++.... ...+...-.+..+...++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-------~l~f~ei~~s~---~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-------VLQFYEIVFSA---ECLPCVLELEPPGICISM 336 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-------hhhhhhhhccc---cCCCcccccCCCcceeee
Confidence 654221 111 223344333333 3333333322 12222222111 111111112334555666
Q ss_pred EEcCCCCEEEEeeCCC----cEE----EEeCCCCcEeeeecccc-CC-cc---ceEEEEEcCCCCEEE-EEeCCCeEEEE
Q 021925 153 VWGPLNRTIISAGEDA----IVR----IWDTETGKLLKESDKET-GH-KK---TITSLAKAADGSHFL-TGSLDKSAKLW 218 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg----~i~----iwd~~~~~~~~~~~~~~-~~-~~---~v~~~~~~~~~~~l~-~~~~dg~i~iw 218 (305)
+.++..+.++...... .++ --|-.+|.++...+... +. .. .-..+.-.++.++++ ++...+.+.+|
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 6666555554433220 011 11222333332222100 00 00 001111133445544 55566889999
Q ss_pred EcCCceEEEEEeeCCCeeEEEecCC--CCcEEEeeCCcEE
Q 021925 219 DARTLELIKTYVTERPVNAVTMSPL--LDHVCIGEPQTIK 256 (305)
Q Consensus 219 d~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~ 256 (305)
|..+++.++.+....+|.+++...- +.+|++=.++...
T Consensus 417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~ 456 (463)
T KOG1645|consen 417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVH 456 (463)
T ss_pred ccchhheeeecccCcceeecceeecCCcchhhheecceEE
Confidence 9999999999998899988876542 3466666666544
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.04 E-value=8.7e-10 Score=58.46 Aligned_cols=34 Identities=29% Similarity=0.578 Sum_probs=32.9
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF 38 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 38 (305)
.+++|.++|++++|+|++++|++|+.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5899999999999999999999999999999997
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.03 E-value=2.1e-06 Score=64.48 Aligned_cols=226 Identities=16% Similarity=0.163 Sum_probs=119.5
Q ss_pred EEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCC---cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 15 YLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~---~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
.++.+++|+.||.. .|..|.|-..++. ..+.+.+-.+ -.=+.++|+||+..||.+...|+|+++|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 35677899888865 5778888765542 2222222222 2347899999999999999999999999874 44444
Q ss_pred Ee--------eCCCceEEEEecCC-------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE--Ee-ccCCCeeE
Q 021925 90 FN--------FDSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI--LK-GPQGRINR 151 (305)
Q Consensus 90 ~~--------~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~ 151 (305)
+. ....|..+.|.+.. .++++.. .+.++.+.+... ..+..+..+. +. .+...|.+
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y------~G~L~Sy~vs~g-t~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY------RGQLRSYLVSVG-TNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEec------cceeeeEEEEcc-cCCcceeeEEEEecccCCCceeE
Confidence 43 22344555555432 2233222 122222222111 0111222222 22 24678999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE--EEEEeCCC------eEEEEEcCCc
Q 021925 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDK------SAKLWDARTL 223 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg------~i~iwd~~~~ 223 (305)
+.++|..+.|+.|+.... +.+.. . +....+++-..-.+..+ .++...|+ +-.+|.+-+.
T Consensus 153 ~vy~p~h~LLlVgG~~~~------~~~~s----~---a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 153 AVYHPKHRLLLVGGCEQN------QDGMS----K---ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred EEEcCCCCEEEEeccCCC------CCccc----c---ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence 999999888877664322 00000 0 11112222111111111 11222221 1233333332
Q ss_pred eEEEE-EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 224 ELIKT-YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 224 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
+.... ......|..|..||||..||+..-.|. +.+|.+.
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-----lsLW~iP 259 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-----LSLWEIP 259 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCe-----EEEEecC
Confidence 22111 125677999999999999999998887 5555543
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=7.3e-07 Score=73.61 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=119.5
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-----EEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-----CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-----~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v 96 (305)
+..++.++.+|.++.+|.++|+.+.++........ +.... + ..++.+..+|.+..+|.++++.+.......+.
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 34566667788888888888887766653222111 11111 2 36777888899999999999887665422110
Q ss_pred ------------eEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 97 ------------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 97 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
....+ .++..++...++ .+...+.. .++....... ....... ..+..++.+
T Consensus 223 g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g------~l~a~d~~------tG~~~W~~~~--~~~~~p~--~~~~~vyv~ 285 (377)
T TIGR03300 223 GRTELERLVDVDGDPVV-DGGQVYAVSYQG------RVAALDLR------SGRVLWKRDA--SSYQGPA--VDDNRLYVT 285 (377)
T ss_pred CCCchhhhhccCCccEE-ECCEEEEEEcCC------EEEEEECC------CCcEEEeecc--CCccCce--EeCCEEEEE
Confidence 01111 133333332221 12222221 1222221111 1111111 246678888
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-CeeEEEecCC
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPL 243 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~ 243 (305)
+.||.+..+|..+++.+....... .....+... .+..+++++.+|.++++|..+++.+.++.... .+..--...+
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~ 361 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKNDELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG 361 (377)
T ss_pred CCCCeEEEEECCCCcEEEcccccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC
Confidence 899999999999998876653211 111222222 35688999999999999999999998887333 3332222223
Q ss_pred CCcEEEeeCCcEE
Q 021925 244 LDHVCIGEPQTIK 256 (305)
Q Consensus 244 ~~~l~~~~~~~~~ 256 (305)
+ .|++++.++..
T Consensus 362 ~-~l~v~~~dG~l 373 (377)
T TIGR03300 362 D-GLLVQTRDGDL 373 (377)
T ss_pred C-EEEEEeCCceE
Confidence 3 47777777753
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.5e-09 Score=82.47 Aligned_cols=218 Identities=16% Similarity=0.114 Sum_probs=145.4
Q ss_pred ecccccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecC--CCcceEEEEEcCC-Cc-EEE-EEeCCCcEEEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRD-SM-TLI-TGSADQTAKLW 79 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~--~~~~v~~i~~~~~-~~-~l~-s~~~dg~v~vw 79 (305)
+..|...|.+++.+-+|..+.|.+. |..++++|+++-..+..++- -.+.+..+ -++. .. .++ +.-.+|.+.++
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~Vv 127 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVV 127 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEE
Confidence 4578888899999999999999777 99999999987655433331 22222211 2221 11 333 33458999999
Q ss_pred ecCCCCeeE-EEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec------c---cCCCCCceEEEEeccCC
Q 021925 80 NVETGAQLF-TFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------D---PADQGGESVLILKGPQG 147 (305)
Q Consensus 80 d~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~ 147 (305)
|-....+.. -+. +-.+|.++.+.+.+..++..... +-+..|.... . ...........+...+.
T Consensus 128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~-----gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt 202 (558)
T KOG0882|consen 128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS-----GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT 202 (558)
T ss_pred CCcCCcCccceecccccCceEEEEeeccccceeecccc-----ceeEeecCCCcccCccccccccccccchhhccccccc
Confidence 976554222 222 78899999999988777765532 2233333321 0 01111122233344567
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-----------------------------cCC-ccceEEE
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----------------------------TGH-KKTITSL 197 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------~~~-~~~v~~~ 197 (305)
...++.++|++..+.+-+.|..|++++.++++.++.+.+. ..| ...-+.+
T Consensus 203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~ 282 (558)
T KOG0882|consen 203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNA 282 (558)
T ss_pred CccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccccee
Confidence 7889999999999999999999999999999877665431 011 2234567
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.|...|++|+-|+.=| |++.++.+++..+.+.
T Consensus 283 ~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 283 VFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred EEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 8888999999988777 9999999988877765
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=1.3e-08 Score=79.14 Aligned_cols=161 Identities=14% Similarity=0.170 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCee----eEEecCCCcceEEEEEcCCCcEEEE---EeCCCcEEEEecCCCC
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSRDSMTLIT---GSADQTAKLWNVETGA 85 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s---~~~dg~v~vwd~~~~~ 85 (305)
+..+..+++++++|.+..+....+++...... +.... -...-+.+.|..+...... ++....+.+|...++.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34456788999999998888877777654332 22222 2223344555444433333 4455667777776677
Q ss_pred eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
+...+.+-+.+..++++||++.++++.. +..+++...... ...-...-||+.-|..++.-++. .|++++
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDR-----DEkIRvs~ypa~-----f~IesfclGH~eFVS~isl~~~~-~LlS~s 212 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADR-----DEKIRVSRYPAT-----FVIESFCLGHKEFVSTISLTDNY-LLLSGS 212 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecC-----CceEEEEecCcc-----cchhhhccccHhheeeeeeccCc-eeeecC
Confidence 7777778999999999999999988865 333333332211 11112235789999999987654 489999
Q ss_pred CCCcEEEEeCCCCcEeeeec
Q 021925 166 EDAIVRIWDTETGKLLKESD 185 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~ 185 (305)
.|++|++||+++++.+.++.
T Consensus 213 GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCcEEEEecccCCcccccc
Confidence 99999999999999886654
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.96 E-value=4.2e-06 Score=64.73 Aligned_cols=186 Identities=15% Similarity=0.097 Sum_probs=114.3
Q ss_pred eEEEEEc-CCCCEEEEeeCCCceEEEEcCCCeeeEEecC-----CCcceEEEEEcCCCcEEEEEeCC--------CcEEE
Q 021925 13 LTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRDSMTLITGSAD--------QTAKL 78 (305)
Q Consensus 13 v~~~~~~-~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~~d--------g~v~v 78 (305)
...+++. +++.+++ +... .+.++|..+++....... .....+++++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5667777 6655444 4544 456669888865433332 34578999999999977765543 45777
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEEeccCCCeeEEEEcCC
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
++.. ++.......-.....++|+|+++.++++... ...+...++..... ....+....+....+....+++..+
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccc----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence 7776 5555555566677899999999887765432 12222223321111 0000111122222234778999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc-CCCCEEEEE
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTG 209 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 209 (305)
|+..++....+.|.++|.+ ++.+..+.. ....+++++|. ++.+.|+..
T Consensus 195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~---p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPD-GKLLREIEL---PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S-EEEEEETTTEEEEEETT-SCEEEEEE----SSSSEEEEEEESTTSSEEEEE
T ss_pred CCEEEEEcCCCEEEEECCC-ccEEEEEcC---CCCCEEEEEEECCCCCEEEEE
Confidence 9988887788999999987 888888863 23588999994 565655543
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.8e-09 Score=80.62 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=102.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-----eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~ 83 (305)
++.|.++.|...++++..|+.+|.|...|++.+ .+...+. |.+.|+++.... ++++|++.+.+|+|++||.+.
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456788889888999999999999999999864 3445555 899999999887 788999999999999999985
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE--EEEcCCCCEE
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR--AVWGPLNRTI 161 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l 161 (305)
-++.. .+..+.+|-..-.- +...+....+
T Consensus 331 ~K~~~-------------------------------------------------~V~qYeGHvN~~a~l~~~v~~eeg~I 361 (425)
T KOG2695|consen 331 TKCKK-------------------------------------------------SVMQYEGHVNLSAYLPAHVKEEEGSI 361 (425)
T ss_pred hhccc-------------------------------------------------ceeeeecccccccccccccccccceE
Confidence 55411 12233344322211 2345566788
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCC-ccceEEEEEc
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKA 200 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~ 200 (305)
++++.|...+||.++.+..+.+++..... +..+.+++|.
T Consensus 362 ~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99999999999999999998888632221 2234455554
No 303
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=7.1e-07 Score=76.42 Aligned_cols=203 Identities=10% Similarity=0.048 Sum_probs=134.2
Q ss_pred EEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc-eEEEEEcCCCcEEEEEeCCCc-----EEEEecCCC------
Q 021925 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQT-----AKLWNVETG------ 84 (305)
Q Consensus 17 ~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~-----v~vwd~~~~------ 84 (305)
+|++.+..++.|+.+|.|.+.+ .+.+.+..++++... |..+....+.++|++.+.|+. |++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999999887 345555778887777 555555555578888887654 999998633
Q ss_pred Cee---EEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 85 AQL---FTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 85 ~~~---~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
+++ ..+. .+.++.+++++.+-+.++++-.++........+ ....+...........+|+.+++..
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi-------~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI-------LRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc-------hhccccceeeeccCCCCceeeEEec
Confidence 233 1111 256788899999988888876543332222111 1112223344445678999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+++.++.......|.+|.+....+... ....|...++|-++++....+++++. ..+.+||.....+-..+.
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~--~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK--VLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee--eeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 987744344446799999984442222 22367888999999886654666654 459999988666555554
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=4e-06 Score=64.51 Aligned_cols=208 Identities=17% Similarity=0.119 Sum_probs=123.8
Q ss_pred CCceEEEEcCCCeeeEEecCC--CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceE
Q 021925 31 DHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 108 (305)
+|.|..||..+|+.+.+..-- .....+. ..+++..+++++.++.|..||..+|+.+.....+..+.......++.++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 688999999999988877531 1122211 2234567777889999999999999999999876665554455556655
Q ss_pred EEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccC---CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeee
Q 021925 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQ---GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 184 (305)
+...++. +...+. ..++..... .... ...........++.++.+..++.|..+|+++|+.+...
T Consensus 81 v~~~~~~------l~~~d~------~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 81 VGTSDGS------LYALDA------KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTSE------EEEEET------TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred cccceee------eEeccc------CCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 5554321 111111 122333321 1110 11112222223778888888999999999999998877
Q ss_pred ccccCCc-cc------e-EEEEEcCCCCEEEEEeCCCe-EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 185 DKETGHK-KT------I-TSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 185 ~~~~~~~-~~------v-~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
....... .. + ..+.+. ++ .++.++.++. +.+ |+.+++.+.+.. ...+.. ...+++..|++++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTE
T ss_pred ecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCE
Confidence 6421111 11 1 223333 44 6777777775 555 999999765333 222222 24567778888776665
Q ss_pred E
Q 021925 256 K 256 (305)
Q Consensus 256 ~ 256 (305)
.
T Consensus 224 l 224 (238)
T PF13360_consen 224 L 224 (238)
T ss_dssp E
T ss_pred E
Confidence 3
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.93 E-value=4.9e-07 Score=80.15 Aligned_cols=193 Identities=17% Similarity=0.152 Sum_probs=128.2
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc
Q 021925 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131 (305)
Q Consensus 52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (305)
.+.|.++.|..+++.++.+..+|.|.+-|.++......-.....|.+++|+|++..++..++....+...-....+....
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 46899999999999999999999999999988877777778999999999999999888776332222111110000000
Q ss_pred C------------CCCCceEEEEec---------------------cCCCeeEEEEcCCCCEEEEee----CC-CcEEEE
Q 021925 132 A------------DQGGESVLILKG---------------------PQGRINRAVWGPLNRTIISAG----ED-AIVRIW 173 (305)
Q Consensus 132 ~------------~~~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~----~d-g~i~iw 173 (305)
. ..-++....+.+ -.+.=+++.|--||+++|+.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 000111111111 112234699999999999733 23 789999
Q ss_pred eCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCCCC
Q 021925 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYV-----TERPVNAVTMSPLLD 245 (305)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~ 245 (305)
|.. +..-..-. .....-.+++|-|.|..+++-. .|+.|.++. ++|.....+. ...++..++|+.++.
T Consensus 228 drE-g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 228 DRE-GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred ccc-chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCC
Confidence 977 44333222 2334456799999999988754 466799998 4454444433 233489999999999
Q ss_pred cEEE
Q 021925 246 HVCI 249 (305)
Q Consensus 246 ~l~~ 249 (305)
.|++
T Consensus 303 iLAv 306 (1265)
T KOG1920|consen 303 ILAV 306 (1265)
T ss_pred ceee
Confidence 9988
No 306
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.93 E-value=1.8e-06 Score=71.36 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=125.0
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEE
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~ 100 (305)
.+..+++++.+|.|.-+|..+|+.+.+..........+.. ++..++.++.+|.+..+|.++|+.+........+.+..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 3567888888999999999999988776643322222222 45678888899999999999999988877555443322
Q ss_pred EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe-----eEEEEcCCCCEEEEeeCCCcEEEEeC
Q 021925 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI-----NRAVWGPLNRTIISAGEDAIVRIWDT 175 (305)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~iwd~ 175 (305)
...++..++...++. +...+.. .++.+-......... .+.... +..++.+..+|.+..+|.
T Consensus 142 ~v~~~~v~v~~~~g~------l~a~d~~------tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 142 LVANGLVVVRTNDGR------LTALDAA------TGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL 207 (377)
T ss_pred EEECCEEEEECCCCe------EEEEEcC------CCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence 223444444333221 2222211 111111111110000 011111 246778888899999999
Q ss_pred CCCcEeeeeccccCC--c--cceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEE
Q 021925 176 ETGKLLKESDKETGH--K--KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 176 ~~~~~~~~~~~~~~~--~--~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 249 (305)
++++.+......... . .....+.-+| .+..+++++.+|.++.+|.++++.+....... ..... ..+..+++
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv 284 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYV 284 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEE
Confidence 999876554311000 0 0000111111 24578888889999999999998877665222 11122 24556666
Q ss_pred eeCCcEEEEEE
Q 021925 250 GEPQTIKFMLL 260 (305)
Q Consensus 250 ~~~~~~~~~~~ 260 (305)
++.++....+.
T Consensus 285 ~~~~G~l~~~d 295 (377)
T TIGR03300 285 TDADGVVVALD 295 (377)
T ss_pred ECCCCeEEEEE
Confidence 66666544433
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.92 E-value=3e-06 Score=75.38 Aligned_cols=226 Identities=12% Similarity=0.085 Sum_probs=138.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC----CCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE----TGA 85 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~----~~~ 85 (305)
.+.|.++.|..+++.++.+..+|.|.+-|.++... .....-...|.+++|+||++.++..+.++++.+-.-. ..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 35899999999999999999999999998776543 2233356789999999999999988888887775431 111
Q ss_pred ee-------------------EEEe----------------------eCCCceEEEEecCCceEEEeCCcceeeeeeEEE
Q 021925 86 QL-------------------FTFN----------------------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (305)
Q Consensus 86 ~~-------------------~~~~----------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (305)
.+ ..+. ..+.-..+.|.-+|.++++..-....-...+.+
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11 0111 112234588888888888753211111134444
Q ss_pred EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee---CCCcEEEEeCCCCcEeeeeccccC-CccceEEEEEc
Q 021925 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKETG-HKKTITSLAKA 200 (305)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 200 (305)
|+-.. ..-..-....+.-.+++|-|.|..+++-. .|+.|.++..+ |-.-..+..... ....+..++|+
T Consensus 227 ~drEg-------~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 227 YDREG-------ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred ecccc-------hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeec
Confidence 44331 11111112233446799999999888754 46679999854 333222221112 23349999999
Q ss_pred CCCCEEEE---EeCCCeEEEEEcCCceEE--EEEeeCCCeeEEEecCCCC
Q 021925 201 ADGSHFLT---GSLDKSAKLWDARTLELI--KTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 201 ~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~ 245 (305)
.++..|++ ......|++|-+.+..-. +.+..+.... +.|+|...
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~ 347 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTE 347 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCc
Confidence 99999887 444455999988765322 2222222111 66777443
No 308
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.89 E-value=7.8e-06 Score=66.91 Aligned_cols=236 Identities=12% Similarity=0.087 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee-------------------------------------------eEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-------------------------------------------LGTY 48 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~-------------------------------------------~~~~ 48 (305)
.|+.+.|+++...|++|...|.|.||....++. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 589999999988999999999999996542111 1112
Q ss_pred cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC---------CceEEEEec-----CC---ceEEEe
Q 021925 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS---------PARSVDFAV-----GD---KLAVIT 111 (305)
Q Consensus 49 ~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~---------~v~~~~~~~-----~~---~~~~~~ 111 (305)
+...++|++++.+.=| +++.|..+|.+.|.|++....+..-.... .+.++.|.. ++ -.++++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3446899999998544 99999999999999999888777754222 466777763 22 345555
Q ss_pred CCcceeeeeeEEEEEeecccC-CCCCceEEEEeccCCCeeEEE-EcCC-----------------C---CEEEEeeCCCc
Q 021925 112 TDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAV-WGPL-----------------N---RTIISAGEDAI 169 (305)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~dg~ 169 (305)
++. +.+..+.+..... ....+.......+.++|..+. ++.+ + +-++....+..
T Consensus 162 Tn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 162 TNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp ETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred eCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 542 2233333321110 001111122224445555444 2111 1 12344444678
Q ss_pred EEEEeCCCCcEeeeeccccCCccceEEEEE-----cCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC-----CeeEEE
Q 021925 170 VRIWDTETGKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAVT 239 (305)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~ 239 (305)
++++...+.+...+.. ........+.+ ...+..|++-..+|.++++.+...+.+....... .+...+
T Consensus 237 irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp EEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred eEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 9999998877766554 22223333344 2356678889999999999999999988877432 356778
Q ss_pred ecCCCCcEEEeeCCcEE
Q 021925 240 MSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~ 256 (305)
++++|+.++..+.....
T Consensus 314 is~~Gdi~~~~gpsE~~ 330 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQ 330 (395)
T ss_dssp E-TTS-EEEE-SSSEEE
T ss_pred ECCCCCEEEEeCcccEE
Confidence 89999988777666543
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.87 E-value=4.9e-07 Score=74.44 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=63.2
Q ss_pred ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
.....+.+.+++|+.+.++.|+.||.|.+||...+..... ...-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 5677899999999999999999999999999876633322 2456678999999999999999999999999763
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=1.7e-08 Score=84.56 Aligned_cols=209 Identities=15% Similarity=0.233 Sum_probs=132.1
Q ss_pred EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.||...|+.+.|+|.. ..+++++.|..+..||+++.. ++.....-......++|+-....+...+..+.+.+||.+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 578999999999999954 588999999999999998754 444444444556889998744444445566789999998
Q ss_pred CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-CCEE
Q 021925 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTI 161 (305)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 161 (305)
.+.. +...+++|...++.+.|..- ...+
T Consensus 189 ~gs~---------------------------------------------------pl~s~K~~vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 189 KGST---------------------------------------------------PLCSLKGHVSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred CCCc---------------------------------------------------ceEEecccceeeehHHHhhhhhhhh
Confidence 6642 22334455666666666543 2467
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE--EEEEeCCCeEEE---------EEcCC-ceEEEEE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDKSAKL---------WDART-LELIKTY 229 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i---------wd~~~-~~~~~~~ 229 (305)
.+++.||+|+.||............ ....+|..-.+-|-|.- +.---.+..+-+ |+..+ .++++.|
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred cccCCCCceeeecccccccccceec--cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 8899999999999875432221111 24556666666664332 211111223333 33332 3677777
Q ss_pred e-eCCCeeEEEecCCCC----------cEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 230 V-TERPVNAVTMSPLLD----------HVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 230 ~-~~~~v~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
. |...|....|-..+. .|++=+.|-. +++|.+..++.
T Consensus 296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~-----lrlWpI~~~i~ 343 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT-----LRLWPIDSQIQ 343 (1081)
T ss_pred cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc-----eEeeeccHHHH
Confidence 7 666666665544332 3666676665 66776654443
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1e-06 Score=74.70 Aligned_cols=236 Identities=10% Similarity=0.032 Sum_probs=149.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC------------cEEEEEeCCCcE
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS------------MTLITGSADQTA 76 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~------------~~l~s~~~dg~v 76 (305)
|...-.++.|+|.| ++|.|+ ...|.+-|..+.+.++.++.|...|+.+.|.|.. -.|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 44457789999988 777776 4488889999999999999999999999998721 256778889999
Q ss_pred EEEecCCCCeeEEEe-eCCCceEEEEec---CC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 77 KLWNVETGAQLFTFN-FDSPARSVDFAV---GD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
.+||...+..+..++ +..++..++|-+ +. ..+++-.. ...+.+|+.. .++..-..........|
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-----ss~lvLwntd------tG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-----SSTLVLWNTD------TGEKFWKYDYSHEILSC 160 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-----CcEEEEEEcc------CCceeeccccCCcceee
Confidence 999999888777777 667888888876 23 22332222 1223333322 23333333444445566
Q ss_pred EEEcCC-CCEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCc----------------cc---------eEEEEEcC
Q 021925 152 AVWGPL-NRTIISAGEDAIVRIWDTETGK----LLKESDKETGHK----------------KT---------ITSLAKAA 201 (305)
Q Consensus 152 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~----------------~~---------v~~~~~~~ 201 (305)
+.+.|- .+.+...+..|.+.+-+.-..+ +.+.++....|. .. .-.++|+|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 777774 3556555566666665542110 111111000111 00 12346778
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCC--CcEEEeeCCcEEE
Q 021925 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL--DHVCIGEPQTIKF 257 (305)
Q Consensus 202 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~ 257 (305)
.-+-++.......+.++|++-..++.... ....+.-+.+-|++ ..|++...+|..-
T Consensus 241 ~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 66556666678889999999888888877 33334555665554 4577777777643
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.79 E-value=5.5e-05 Score=62.78 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=78.2
Q ss_pred CeeEEEEcCCC-CEEEE----eeCCCc----EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925 148 RINRAVWGPLN-RTIIS----AGEDAI----VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 148 ~i~~~~~~~~~-~~l~~----~~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 218 (305)
...++.|+-.. ..+.+ .+.+|. -.+|+....+..+.-...-.....+.+++++|+...|+.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 34566676533 33333 233443 4567766544322211112477899999999999999999999999999
Q ss_pred EcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 219 DARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 219 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
|...+..... +..-.++.++|+|+|..+++|++.|..-.+.+.
T Consensus 287 D~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 287 DTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 9877644332 466678999999999999999999984444333
No 313
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.79 E-value=1e-05 Score=67.03 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=115.1
Q ss_pred EEEcCCCCEEEEeeCC----------C-ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 16 LKYNKDGDLLFSCAKD----------H-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~d----------g-~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
++.+|.|-.+|....+ . .|.||+. .|+.+.++.-..+.+.++.|..+. .|+....||.++++|+. |
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-G 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-C
Confidence 4555666666655433 1 4888874 467777665444899999998754 56677789999999986 3
Q ss_pred CeeEEEeeCC-----CceEE-----EEecCCceEEEeCCcceeeeeeEEEE-EeecccCCCCCceEEEEeccCCCeeEEE
Q 021925 85 AQLFTFNFDS-----PARSV-----DFAVGDKLAVITTDPFMELNSAIHVK-RIARDPADQGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 85 ~~~~~~~~~~-----~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (305)
+. .+..+. .+... .+...|-.++..... .......... ...... ...........+........
T Consensus 111 ~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~-~~~v~n~~~~~~~~~~~--~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 111 EF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNR-FYVVNNIDEPVKLRRLP--EIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred ce--eechhhhccccCcccccccccccCCCCEEEECCCCe-EEEEeCccccchhhccc--cCCCcccccccccccccceE
Confidence 33 222211 11111 222234333322221 1111111100 000000 00000000011111100123
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE- 232 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 232 (305)
++.+....+....++.+.+.+-...+. + ...+++..|+.||+|+++|.-..+|.+.+....-.+.+.++..+
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~ 258 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS 258 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence 444455555555556666444332211 2 23468999999999999999999999999987766666666633
Q ss_pred -CCeeEEEecCCCC
Q 021925 233 -RPVNAVTMSPLLD 245 (305)
Q Consensus 233 -~~v~~~~~~~~~~ 245 (305)
.....+.|.-+..
T Consensus 259 ~~~p~~~~WCG~da 272 (410)
T PF04841_consen 259 KSPPKQMAWCGNDA 272 (410)
T ss_pred CCCCcEEEEECCCc
Confidence 5667788877653
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.77 E-value=9.9e-08 Score=80.20 Aligned_cols=183 Identities=16% Similarity=0.288 Sum_probs=128.0
Q ss_pred eEEEEEcCCC--CEEEEeeCCCceEEEEcCC---CeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCCCe
Q 021925 13 LTYLKYNKDG--DLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 13 v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
|-...|+|.. .+-++......-.+|++.. ......+.+|...|+++.|+|+. ..+++++.|-.+..||+++...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 7778888743 3444444455667887753 33445678899999999999954 5789999999999999986643
Q ss_pred eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
.. .....-......++|+-....+.+.+.
T Consensus 150 p~---------------------------------------------------ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 150 PF---------------------------------------------------YSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred ce---------------------------------------------------eeeecccccCceeeecccCcchhhhcc
Confidence 21 111111233456778776666666777
Q ss_pred CCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce--EEEEEeeCCCeeEEEecC
Q 021925 167 DAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLE--LIKTYVTERPVNAVTMSP 242 (305)
Q Consensus 167 dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~ 242 (305)
...|++||++.+. ++..+. +|...|+.++|.. -...+.+.+.||+|+.||..... ..+......+|+.-.+-|
T Consensus 179 g~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred CCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 7889999999764 555565 6888889888876 23458899999999999987543 334444677888888888
Q ss_pred CCCcEEE
Q 021925 243 LLDHVCI 249 (305)
Q Consensus 243 ~~~~l~~ 249 (305)
-|+-.++
T Consensus 256 fg~g~~~ 262 (1081)
T KOG0309|consen 256 FGEGYCI 262 (1081)
T ss_pred cCceeEe
Confidence 7765444
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=1.1e-05 Score=62.15 Aligned_cols=187 Identities=20% Similarity=0.161 Sum_probs=107.5
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-eeCCC----
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSP---- 95 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~---- 95 (305)
++..+++++.++.+..||..+|+.+.+... .+.+...... ++..++.++.++.+..+|.++|+.+... ....+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 566777778999999999999998887774 2222221222 3446677778889999999999999985 42211
Q ss_pred ceEEEEecCCceEEEeC-CcceeeeeeEEEEEeecccCCCCCceEEEEeccCC----------CeeEEEEcCCCCEEEEe
Q 021925 96 ARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQG----------RINRAVWGPLNRTIISA 164 (305)
Q Consensus 96 v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~ 164 (305)
.........+..++++. +..+... +. ..++.+........ .+..-....++ .++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~------d~------~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 179 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVAL------DP------KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVS 179 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEE------ET------TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEE
T ss_pred ccccCceEecCEEEEEeccCcEEEE------ec------CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEE
Confidence 11222222344444433 2222111 11 11222222222111 11122222234 67777
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 228 (305)
+.++.+.-+|+.+++.+.... ...+... ...++..|+.++.++.+..||+++++.+.+
T Consensus 180 ~~~g~~~~~d~~tg~~~w~~~-----~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 180 SGDGRVVAVDLATGEKLWSKP-----ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CCTSSEEEEETTTTEEEEEEC-----SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEec-----CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 777764444999998664322 1122221 345677888888999999999999998754
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=3.4e-08 Score=72.66 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=61.8
Q ss_pred cceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925 11 RPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 11 ~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..|++++-+|.. ..+++|+.||.+-+||.++.. +...+..|+.++..+-|+| ++..|++++.||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 348999999954 567788899999999998764 3456678999999999999 778999999999999999764
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.75 E-value=3.7e-06 Score=71.12 Aligned_cols=217 Identities=13% Similarity=0.025 Sum_probs=119.1
Q ss_pred cCCCCEEEEe-eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC----CcEEEEecCCCCeeEEEeeC
Q 021925 19 NKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQLFTFNFD 93 (305)
Q Consensus 19 ~~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~ 93 (305)
+|||+.+... -..+.+.+.|.++.+...++.- .+....++++|+|+++++.+.+ .++..-+..+...+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4455544322 2235666777777776666553 2344677899999988877642 22333332222222222111
Q ss_pred CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEE
Q 021925 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRI 172 (305)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i 172 (305)
. .-++.++|+...+..+ .+.+.+.... ......+...-.-......+.++|||+++++++. +.++.+
T Consensus 280 ~---iea~vkdGK~~~V~gn-------~V~VID~~t~--~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 280 R---IEEAVKAGKFKTIGGS-------KVPVVDGRKA--ANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred H---HHHhhhCCCEEEECCC-------EEEEEECCcc--ccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 0 0022334554444211 1222222110 0001122233334456778999999998887665 899999
Q ss_pred EeCCCCcE------------eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC----------ceEEEEEe
Q 021925 173 WDTETGKL------------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART----------LELIKTYV 230 (305)
Q Consensus 173 wd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~ 230 (305)
.|+.+.+. ..+.+ -.......+|.++|+...+-..|..|..||+.+ ...+..+.
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaeve----vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPE----LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeec----cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 99987553 33332 233445678999998888888999999999876 23334343
Q ss_pred eCCCeeEEE------ecCCCCcEEEeeC
Q 021925 231 TERPVNAVT------MSPLLDHVCIGEP 252 (305)
Q Consensus 231 ~~~~v~~~~------~~~~~~~l~~~~~ 252 (305)
..-.+-.+. -.|+|++|++...
T Consensus 424 V~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 424 VHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CCCccceeeecCCCcCCCCCCEEEEccc
Confidence 222222222 3688888887643
No 318
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.72 E-value=2.3e-06 Score=70.61 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=130.5
Q ss_pred CeeeEEecCCCcceEEEEEcCCCcEEEEEe---CC-CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee
Q 021925 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGS---AD-QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117 (305)
Q Consensus 42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~---~d-g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 117 (305)
+.....+..-...+..-+|+|++..++-.+ .. ..+.++++.+++.......+..-...+|+|+++.++.+....
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd-- 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD-- 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--
Confidence 454555555566788889999998765432 22 359999999999888888888888999999999988887543
Q ss_pred eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeeccccCCccce
Q 021925 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTI 194 (305)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v 194 (305)
+...++...... +....+....+.-..-.|+|+|++++-.+. .| .|.++|+..+.. ..+.. ....-
T Consensus 260 --g~~~iy~~dl~~-----~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~---~~~~~ 328 (425)
T COG0823 260 --GSPDIYLMDLDG-----KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF---SGGGN 328 (425)
T ss_pred --CCccEEEEcCCC-----CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec---cCCCC
Confidence 222222222111 112223333444446789999998886654 44 577777776554 33321 11222
Q ss_pred EEEEEcCCCCEEEEEeC-CCe--EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 195 TSLAKAADGSHFLTGSL-DKS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 195 ~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
..-.|+|||++|+..+. +|. |.+.|+.++..+..+..........|.|+++.+...++..
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 26789999999887764 344 6677776665555555555566778999999887765544
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.71 E-value=3.2e-05 Score=58.94 Aligned_cols=207 Identities=12% Similarity=0.116 Sum_probs=111.7
Q ss_pred eEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCC-CcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
..+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.++++.-. .+..-.|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34667677799999999755 5555666778877785 57877776533 345788999888877776666888999988
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
.......... ......+ .....+...+..++|+|.++.|
T Consensus 94 ~~~~~~~~~~-----------------------------~~~~~~l------------~~~~~~N~G~EGla~D~~~~~L 132 (248)
T PF06977_consen 94 DDDTTSLDRA-----------------------------DVQKISL------------GFPNKGNKGFEGLAYDPKTNRL 132 (248)
T ss_dssp ----TT--EE-----------------------------EEEEEE---------------S---SS--EEEEEETTTTEE
T ss_pred eccccccchh-----------------------------hceEEec------------ccccCCCcceEEEEEcCCCCEE
Confidence 5332111000 0000000 0001234557788888888777
Q ss_pred EEeeCCCcEEEEeCCC---CcEeeee-----ccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925 162 ISAGEDAIVRIWDTET---GKLLKES-----DKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~---~~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 232 (305)
+.+-+..-..++.++. ...+... .........+.+++++|. +++++.+.....+..+| .+|+++..+...
T Consensus 133 ~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~ 211 (248)
T PF06977_consen 133 FVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLD 211 (248)
T ss_dssp EEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-S
T ss_pred EEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeC
Confidence 7777666666665543 1111111 001123345788999985 56677777888999999 678887777622
Q ss_pred ----------CCeeEEEecCCCCcEEEeeCCc
Q 021925 233 ----------RPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 233 ----------~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
...-.++|.++|++.+++ ..+
T Consensus 212 ~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpN 242 (248)
T PF06977_consen 212 RGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPN 242 (248)
T ss_dssp TTGGG-SS---SEEEEEE-TT--EEEEE-TTT
T ss_pred CcccCcccccCCccEEEECCCCCEEEEc-CCc
Confidence 246789999999766654 444
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=2.7e-07 Score=79.42 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=105.9
Q ss_pred CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---------CCcEEEEecCCCCeeEEE
Q 021925 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~ 90 (305)
.+++.+.+|...|+|.+-|..+.+.++++.+|++.|.++.. .|+.|+++|. |.-|+|||++..+.+.-+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 36789999999999999999999999999999999988776 5779999875 456899999988887777
Q ss_pred eeCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC
Q 021925 91 NFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (305)
Q Consensus 91 ~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 168 (305)
..+....-+.|.|. ...+++...+.. ...+..... .....+..+......+..++++++++.++.|..+|
T Consensus 263 ~~~~~P~flrf~Psl~t~~~V~S~sGq~------q~vd~~~ls--NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 263 QFPYGPQFLRFHPSLTTRLAVTSQSGQF------QFVDTATLS--NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred ccccCchhhhhcccccceEEEEecccce------eeccccccC--CCccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 76655566677774 333333332211 111111110 11122334444555699999999999999999999
Q ss_pred cEEEEeC
Q 021925 169 IVRIWDT 175 (305)
Q Consensus 169 ~i~iwd~ 175 (305)
.|.+|--
T Consensus 335 ~v~~wa~ 341 (1118)
T KOG1275|consen 335 HVNLWAD 341 (1118)
T ss_pred cEeeecC
Confidence 9999973
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=1.1e-06 Score=75.91 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=111.3
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEe
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA 102 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~ 102 (305)
..++.|+-...+..+|+.+.+..+...-..+.|.-++- +++.+.+|...|+|.+-|.++.+.+++
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht------------- 212 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHT------------- 212 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeee-------------
Confidence 34555555555666666666655554433334444443 455666777777777777666555444
Q ss_pred cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee---------CCCcEEEE
Q 021925 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---------EDAIVRIW 173 (305)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------~dg~i~iw 173 (305)
+..|.+.|.++.. .|+.|++++ .|.-|++|
T Consensus 213 ---------------------------------------~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 213 ---------------------------------------FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ---------------------------------------eeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence 4556666654443 366677665 35668999
Q ss_pred eCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCC-ceE---EEEEe-eCCCeeEEEecCCCCcE
Q 021925 174 DTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDART-LEL---IKTYV-TERPVNAVTMSPLLDHV 247 (305)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~~---~~~~~-~~~~v~~~~~~~~~~~l 247 (305)
|++..+.+..+.. +. ...-+.|.|. ...+++++..|...+-|..+ ..+ +..+. .++.+..++++++++.|
T Consensus 252 DLRmmral~PI~~---~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~al 327 (1118)
T KOG1275|consen 252 DLRMMRALSPIQF---PY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDAL 327 (1118)
T ss_pred hhhhhhccCCccc---cc-CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceE
Confidence 9999887776652 22 2244667774 34688888999999999432 222 22222 45569999999999999
Q ss_pred EEeeCCcEE
Q 021925 248 CIGEPQTIK 256 (305)
Q Consensus 248 ~~~~~~~~~ 256 (305)
+.|..++..
T Consensus 328 afgd~~g~v 336 (1118)
T KOG1275|consen 328 AFGDHEGHV 336 (1118)
T ss_pred EEecccCcE
Confidence 999988883
No 322
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=7.9e-06 Score=60.87 Aligned_cols=191 Identities=8% Similarity=-0.032 Sum_probs=124.2
Q ss_pred EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC-eeEEEe---eCCCceEE
Q 021925 24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA-QLFTFN---FDSPARSV 99 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~---~~~~v~~~ 99 (305)
.+..++.|.++++.+++.+..........-.+.++.+++|++++++.+....|..|.+.... .+..+. ....-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 35556778888888776544333332222348899999999999999999999999886442 222222 45566788
Q ss_pred EEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC--CEEEEeeCCCcEEEEeCCC
Q 021925 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTET 177 (305)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 177 (305)
.|+.....++++.. ++...+|+++........+.. .-..|.+.+..+.|+|.| .+|+..-.-+.+.+.|+++
T Consensus 210 S~s~~~~~FAv~~Q-----dg~~~I~DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQ-----DGTCAIYDVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eeccCcceEEEEec-----CCcEEEEEecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 89999988888876 566677777654433222222 223489999999999977 3455555568899999999
Q ss_pred CcEeeeecccc----CCc-cceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 178 GKLLKESDKET----GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 178 ~~~~~~~~~~~----~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
++..+.+.... .|. ..+..-.|+.++..+.+.+++. +.=|++.
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence 87665554221 222 2366667777666665555442 4445443
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.64 E-value=1.2e-05 Score=66.50 Aligned_cols=192 Identities=17% Similarity=0.083 Sum_probs=117.1
Q ss_pred ecccccceEEEEEcCCCCEEEEee---CC-CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCCc--EEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCA---KD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQT--AKL 78 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~---~d-g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~--v~v 78 (305)
+..-...+..-+|+|+++.++..+ .. ..+.++++.+++....+. ..+.-...+|+|||+.|+.+ ..||. |.+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 333445567778999998766542 22 468899999887655554 34444567899999877654 44666 555
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.|+.+++........+.-..-.|+|+|+.++..++..... .++.... .+.....+....+.-..-.|+|+|
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p----~I~~~~~-----~g~~~~riT~~~~~~~~p~~SpdG 337 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRP----QIYLYDL-----EGSQVTRLTFSGGGNSNPVWSPDG 337 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCc----ceEEECC-----CCCceeEeeccCCCCcCccCCCCC
Confidence 5777666444333444445788999999999887643222 2222221 112223333333333367899999
Q ss_pred CEEEEeeC-CCc--EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC
Q 021925 159 RTIISAGE-DAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211 (305)
Q Consensus 159 ~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 211 (305)
++++..+. +|. |.+.|+.++...+.+. .......-.+.++++.+...+.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEecc
Confidence 99987764 354 7777776665444443 3334445567888887665443
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.7e-05 Score=67.12 Aligned_cols=195 Identities=11% Similarity=0.081 Sum_probs=125.7
Q ss_pred EEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925 59 DVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (305)
Q Consensus 59 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (305)
+|++.+..++.|+.+|.|.+.+- +.+.+..+. .+.. +..+....+..++++...+.......+.+|++.......+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 36778889999999999988873 233334444 3333 44444444445666555444333336788888776544433
Q ss_pred ceE--EEEec-----cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC--CCcEeeeeccccCCccceEEEEEcCCCCEEE
Q 021925 137 ESV--LILKG-----PQGRINRAVWGPLNRTIISAGEDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKAADGSHFL 207 (305)
Q Consensus 137 ~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 207 (305)
... ..+.+ ...++.+++.+.+-+.+|.|-.+|.|..+.-. ..+-.+... ......+|+.+++..++..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-SHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-eccCCCCceeeEEecCCceeE
Confidence 444 22223 25678899999999999999999999988432 111111111 113578999999999988744
Q ss_pred EEeCCCeEEEEEcCCceEE-EEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 208 TGSLDKSAKLWDARTLELI-KTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 208 ~~~~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
-...-..|.+|.+....+. ..+. ++.+++|.++++....+++|++...
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l 237 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL 237 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceE
Confidence 4444567999998844433 3344 7778999999988776777766653
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.61 E-value=7.8e-05 Score=63.39 Aligned_cols=184 Identities=13% Similarity=0.039 Sum_probs=116.3
Q ss_pred EcCCCcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce
Q 021925 60 VSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138 (305)
Q Consensus 60 ~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (305)
+.|||+.+...+ ..+.+.+.|.++.+...++..+.....+++++++++++++.-+.-. ...+..+... ....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~---G~tl~em~a~----e~d~ 272 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE---GVTLAEMMAA----ERDW 272 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc---Ccceeeeccc----cCce
Confidence 345666553332 3567888899988888888888888999999999999887521100 0011111000 0001
Q ss_pred EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC-----CcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CC
Q 021925 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-----GKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LD 212 (305)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 212 (305)
...+.... + .++.++|++...+ ++.|.+.|.++ .+.+..+. -......+.++|||+++++++ .+
T Consensus 273 ~vvfni~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 273 VVVFNIAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred EEEEchHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCC
Confidence 11110000 0 1234567766653 57899999998 34555554 456678899999999877655 58
Q ss_pred CeEEEEEcCCceE------------EEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 213 KSAKLWDARTLEL------------IKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 213 g~i~iwd~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
.+|.|.|+++.+. +.+...+......+|.++|....+-.-|+....|.
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 9999999988653 45555555567789999998666666666644333
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.3e-06 Score=74.96 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999998889999999999999988777666667799999999999999999999999999999876
No 327
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.57 E-value=0.00022 Score=57.56 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=120.4
Q ss_pred CceEEEEcCCCeeeEEecC-CCcceEEEE---EcCC----CcEEEEEeC----------CCcEEEEecCCC-------Ce
Q 021925 32 HTPTVWFADNGERLGTYRG-HNGAVWCCD---VSRD----SMTLITGSA----------DQTAKLWNVETG-------AQ 86 (305)
Q Consensus 32 g~v~iw~~~~~~~~~~~~~-~~~~v~~i~---~~~~----~~~l~s~~~----------dg~v~vwd~~~~-------~~ 86 (305)
..|++.|..+.+.+.++.- ....+.+++ +..+ ..+|++|+. .|.|.++++.+. +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888887777665542 233445444 3332 467777643 288999999884 23
Q ss_pred eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC--CeeEEEEcCCCCEEEEe
Q 021925 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISA 164 (305)
Q Consensus 87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~ 164 (305)
+.....+++|.+++-- ++.++++.. ..+.++++.... .......+.. .+.++... +++++.|
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~g-------~~l~v~~l~~~~------~l~~~~~~~~~~~i~sl~~~--~~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAVG-------NKLYVYDLDNSK------TLLKKAFYDSPFYITSLSVF--KNYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEET-------TEEEEEEEETTS------SEEEEEEE-BSSSEEEEEEE--TTEEEEE
T ss_pred EEEEeecCcceEhhhh-CCEEEEeec-------CEEEEEEccCcc------cchhhheecceEEEEEEecc--ccEEEEE
Confidence 3444588899988877 444444443 344455554322 1222222223 44555444 6799999
Q ss_pred eCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----------ceEEEEEeeC
Q 021925 165 GEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-----------LELIKTYVTE 232 (305)
Q Consensus 165 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~ 232 (305)
.....+.++..+. ...+..+.. ......++++.+-++++.++.+..+|.+.++.... ......+..+
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg 224 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG 224 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S
T ss_pred EcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC
Confidence 9888888775443 222333321 12356688888886667999999999999998762 2344556677
Q ss_pred CCeeEE---EecCC--CC------cEEEeeCCcEEE
Q 021925 233 RPVNAV---TMSPL--LD------HVCIGEPQTIKF 257 (305)
Q Consensus 233 ~~v~~~---~~~~~--~~------~l~~~~~~~~~~ 257 (305)
..|+++ ++.|. +. .++.++.+|...
T Consensus 225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred CccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 888888 66662 22 266677777654
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.54 E-value=0.00022 Score=58.36 Aligned_cols=231 Identities=14% Similarity=0.038 Sum_probs=119.7
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CC----------------CcceEEEEEcCCCcEEEEEeC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GH----------------NGAVWCCDVSRDSMTLITGSA 72 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~----------------~~~v~~i~~~~~~~~l~s~~~ 72 (305)
...+....|||+|+.+|... ++.|.+++..+++..+... +- -+.-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999876 6799999887775443221 10 112356889999999887644
Q ss_pred C-CcE-----------------------------------EEEecCCCCeeEE-Ee-----eCCCceEEEEecCCceEEE
Q 021925 73 D-QTA-----------------------------------KLWNVETGAQLFT-FN-----FDSPARSVDFAVGDKLAVI 110 (305)
Q Consensus 73 d-g~v-----------------------------------~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~~ 110 (305)
| ..| .|+|+.+++.... .. ....+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 222 2333333332110 00 2223566777777773333
Q ss_pred eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe---eEEEEc-CCCC-EEEEeeCCCc--EEEEeCCCCcEeee
Q 021925 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI---NRAVWG-PLNR-TIISAGEDAI--VRIWDTETGKLLKE 183 (305)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~-~l~~~~~dg~--i~iwd~~~~~~~~~ 183 (305)
...........+...+... ...+.+. .....+.+ ....+. +++. ++.....||. |.+++...+. .+.
T Consensus 201 ~~~nR~q~~~~l~~~d~~t----g~~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~ 274 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDAST----GETRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQ 274 (353)
T ss_dssp EEEETTSTEEEEEEEEECT----TTCEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEE
T ss_pred EEcccCCCEEEEEEEECCC----CceeEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eec
Confidence 3221111112222222211 1111111 12222222 345554 6665 4445556774 5566666555 334
Q ss_pred eccccCCccceEE-EEEcCCCCEEE-EEeC----CCeEEEEEcCCceEEEEEeeCCCe-eEEEecCCCCcEEEe
Q 021925 184 SDKETGHKKTITS-LAKAADGSHFL-TGSL----DKSAKLWDARTLELIKTYVTERPV-NAVTMSPLLDHVCIG 250 (305)
Q Consensus 184 ~~~~~~~~~~v~~-~~~~~~~~~l~-~~~~----dg~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~ 250 (305)
+. ...-.|+. +.++++++.|. ++.. ...++.-++..+..+..+...... ..+.|||++++++..
T Consensus 275 lT---~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 275 LT---SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred cc---cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 43 34555644 67788776654 5554 235666677733444445544444 499999999997764
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.52 E-value=0.0002 Score=59.62 Aligned_cols=211 Identities=12% Similarity=0.069 Sum_probs=112.7
Q ss_pred EEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-EEEEcC--CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc----
Q 021925 24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA---- 96 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-~i~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v---- 96 (305)
.++.++.+|.+.-+|.++|+.+.+......... ...-+| .+..++.++.+|.+...|.++++.+.......+.
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence 455566677777778777777666543211000 000112 1235666778899999999998877765422110
Q ss_pred ----eEEEEec---CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925 97 ----RSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (305)
Q Consensus 97 ----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 169 (305)
..+..+| ++..++...++ .+...+.. .++.+-... ......+. ..+..++.++.+|.
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~g------~l~ald~~------tG~~~W~~~--~~~~~~~~--~~~~~vy~~~~~g~ 305 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYNG------NLVALDLR------SGQIVWKRE--YGSVNDFA--VDGGRIYLVDQNDR 305 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcCC------eEEEEECC------CCCEEEeec--CCCccCcE--EECCEEEEEcCCCe
Confidence 0011111 33333333221 11111111 111111110 01111111 23567888889999
Q ss_pred EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-CCCeeE-EEecCCCCcE
Q 021925 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNA-VTMSPLLDHV 247 (305)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l 247 (305)
+..+|..+++.+....... .....+... .+..|+.++.||.+...|..+|+.+.+.+. ...+.+ ..+ .+..|
T Consensus 306 l~ald~~tG~~~W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l 379 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKL 379 (394)
T ss_pred EEEEECCCCcEEEcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEE
Confidence 9999999998766543211 111122222 245788899999999999999999888763 333332 222 24467
Q ss_pred EEeeCCcEE
Q 021925 248 CIGEPQTIK 256 (305)
Q Consensus 248 ~~~~~~~~~ 256 (305)
++++.++..
T Consensus 380 ~v~t~~G~l 388 (394)
T PRK11138 380 LIQARDGTV 388 (394)
T ss_pred EEEeCCceE
Confidence 888888764
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=2.5e-06 Score=73.33 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=78.8
Q ss_pred cccceEEEEEcCCCCEEEEeeC----CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 9 HERPLTYLKYNKDGDLLFSCAK----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
-.+.-+-..|+|...++|.++- .|+|.||- ++|++..... ..-.+++++|+|..-.|++|-.-|.+.+|...+.
T Consensus 14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence 3344455789999999998763 58999984 6777544332 2334677999998888889888999999997655
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCc
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDP 114 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ 114 (305)
+.-.... ++.++..+.|+++|..++++...
T Consensus 92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~ 122 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNP 122 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCCCeEEEcCCC
Confidence 4433332 88999999999999999998764
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=3.7e-05 Score=65.85 Aligned_cols=160 Identities=13% Similarity=0.188 Sum_probs=102.2
Q ss_pred EecccccceEEEEEcCC-------------CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-----CcE
Q 021925 5 LMKGHERPLTYLKYNKD-------------GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-----SMT 66 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~-------------~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~ 66 (305)
.|..|.+.|....+.-+ |+++++|+.||.|.|-.+-+.+...++. ...++.+++++|+ .+.
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence 45668877777766555 9999999999999999998888877776 5678999999997 468
Q ss_pred EEEEeCCCcEEEEecC---CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 67 LITGSADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 67 l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
+++||.-| +.++.-+ ....+..-...++|.++.|. |.+++-+.+.+..+.....-..+....... ...
T Consensus 132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~------~~~ 202 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPS------QSV 202 (846)
T ss_pred eeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCC------CCC
Confidence 99999988 8887532 22223233367788888875 566666665443333322222221111111 111
Q ss_pred ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176 (305)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 176 (305)
........+.|.++.+ |+.| ...+|+|..++
T Consensus 203 R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 203 RPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 1122334578887665 4444 33568888877
No 332
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.2e-06 Score=72.58 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=80.6
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-EEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
...|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457789999999999999999999999877 777888887777777 99999999999999999999999999999888
Q ss_pred E--EeeCCCceEEEEec
Q 021925 89 T--FNFDSPARSVDFAV 103 (305)
Q Consensus 89 ~--~~~~~~v~~~~~~~ 103 (305)
. +.....+.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 7 44666777777763
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.45 E-value=0.00039 Score=58.00 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=120.5
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
...-....+.++|+|+.++.+ .||.-.|+.....+... .+.-....|.+.+ .+|+-...++|.++.--+.+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 344557899999999999985 48888888744444322 2334667898855 5777777889999743333343
Q ss_pred EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
..+..+..+..+-. |.++...++.. +..+++ +..+.+..+... +|..+.|++++++++..+.+
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~~------i~~yDw------~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSDF------ICFYDW------ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETTE------EEEE-T------TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred eEEcCCcccceEEc---CcEEEEECCCC------EEEEEh------hHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 44554444444433 66666665432 333333 223445454433 38899999999999988765
Q ss_pred CcEEEEeCCCC-----------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee
Q 021925 168 AIVRIWDTETG-----------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236 (305)
Q Consensus 168 g~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 236 (305)
.+.+++.... .....+. .....|.+.+|..+ .++-.+.. +++- +..|+....-..+.++.
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~y 236 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLY 236 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--E
T ss_pred -eEEEEEecchhcccccccCchhceEEEE---EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceE
Confidence 6777775433 0222222 12467888888766 44433334 6776 44455433333466778
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
=+...|..+.+.....+.......+..-.+.+....
T Consensus 237 llgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av 272 (443)
T PF04053_consen 237 LLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAV 272 (443)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHH
T ss_pred EEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHH
Confidence 888888778888888888766666655444444333
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00054 Score=56.54 Aligned_cols=222 Identities=17% Similarity=0.147 Sum_probs=145.5
Q ss_pred EEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC---CCcEEEEecCCCCeeEE
Q 021925 14 TYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFT 89 (305)
Q Consensus 14 ~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~ 89 (305)
..++.++.++.++ +...++.|.+.|..+.+......--. ....++++|+++.+..+.. ++++.+.|..+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 4667788777444 44456899999987777766655322 5688999999987776655 68899999999998888
Q ss_pred EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--
Q 021925 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-- 167 (305)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 167 (305)
.........+++.|++..+..+... .+.+...+........ .. ......-......+.++|+++++......
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~----~~~v~vi~~~~~~v~~-~~-~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSD----DNTVSVIDTSGNSVVR-GS-VGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecC----CCeEEEEeCCCcceec-cc-cccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 6655445999999999977776521 1222222211110000 00 00011222344678899999876665543
Q ss_pred -CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceEEEEEeeCC----CeeEEEec
Q 021925 168 -AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVTER----PVNAVTMS 241 (305)
Q Consensus 168 -g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----~v~~~~~~ 241 (305)
+.+...|..++.....-... +.. ....+..+|+|..+.+... .+.+.+.|..+.+......... .+..+++.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 58999999988776652211 222 5567889999999887744 4899999999888877765222 35566665
Q ss_pred CCC
Q 021925 242 PLL 244 (305)
Q Consensus 242 ~~~ 244 (305)
+..
T Consensus 308 ~~~ 310 (381)
T COG3391 308 PLY 310 (381)
T ss_pred eec
Confidence 544
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.43 E-value=0.0001 Score=61.29 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=109.1
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----------ce-EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----------~v-~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
.+..+++++.+|.+.-+|.++|+.+.+...... .+ ..+.. ++..++.++.+|.+.-+|.++|+.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 355777788899999999999998876643220 00 01111 345677788899999999999999988
Q ss_pred EeeCCCceEEEEecCCceEEEeCCcceeeee---eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
......+.+--...++..++...++.+.... ....|..... .+.....+...++ . .+..++.++.
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~~~~~~~sP~----v--~~~~v~~~~~ 213 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD------VPSLTLRGESAPA----T--AFGGAIVGGD 213 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC------CCcccccCCCCCE----E--ECCEEEEEcC
Confidence 8765544332222244444433322111111 1112222110 0000000111111 1 1235667778
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCc-c---ceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHK-K---TITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+|.+..+|..+++.+.......... . ....+.-+| .+..++.++.+|.+..+|..+|+.+....
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~ 283 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE 283 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec
Confidence 8999999999988766543111000 0 011111122 24567777889999999999998876654
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.43 E-value=4.4e-06 Score=70.23 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=98.8
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
|...|.--+++..+++++.|+.-|.+++|+...++....- .+-.+.+..+..+++..++|.|+..|.|.++-+..+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3445656667778999999999999999997766543322 234455667778888888899999999999987654321
Q ss_pred EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
... .+.. .-+.|...|++++|++++..+++|...
T Consensus 112 ~~~-----------------~~t~-----------------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 112 DLD-----------------YVTP-----------------------------CDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred cce-----------------eecc-----------------------------ccccCCceEEEEEecccccEEeecCCC
Confidence 110 0000 012378899999999999999999999
Q ss_pred CcEEEEeCCCC-cEeeeeccccCCccceEEEEEc
Q 021925 168 AIVRIWDTETG-KLLKESDKETGHKKTITSLAKA 200 (305)
Q Consensus 168 g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~ 200 (305)
|+|..-.+.+. ......+......+.|-.+...
T Consensus 146 Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 146 GKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 99999888762 1111111111345667666654
No 337
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00047 Score=54.57 Aligned_cols=228 Identities=13% Similarity=0.114 Sum_probs=136.0
Q ss_pred EEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe----
Q 021925 17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---- 91 (305)
Q Consensus 17 ~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---- 91 (305)
.|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++.. -+.+++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 4667666 444445577888888776543 2333 3334455544444445555433 36777776665533332
Q ss_pred --eCCCceEEEEecCCceEEEeCCc----ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 92 --FDSPARSVDFAVGDKLAVITTDP----FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 92 --~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
.....+.....|+|.+.+..... .........++.+.. .+..+..+..+-...+.++||||++.|+.+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 22456678888998888876651 111111112333321 2344555555566678899999998777665
Q ss_pred C-CCcEEEEeCCC--CcEee--eeccccCCccceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceEEEEEeeC-CCeeEE
Q 021925 166 E-DAIVRIWDTET--GKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE-RPVNAV 238 (305)
Q Consensus 166 ~-dg~i~iwd~~~--~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~v~~~ 238 (305)
. .+.|.-|++.. +..-. .........+..-.++...+|.+.+++..+| .|.+|+.. ++++..+..+ ..++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 4 57888887752 11111 0111112345566778888888776555554 89999988 9999998855 778888
Q ss_pred Eec-CCCCcEEEeeCCc
Q 021925 239 TMS-PLLDHVCIGEPQT 254 (305)
Q Consensus 239 ~~~-~~~~~l~~~~~~~ 254 (305)
+|- |+.+.|.+.+...
T Consensus 261 ~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 261 AFGGPDLNTLYITSARS 277 (307)
T ss_pred eEeCCCcCEEEEEecCC
Confidence 885 5566666554443
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2e-06 Score=71.36 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=79.5
Q ss_pred CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE-EEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
...+..+.|+|.-..+|.+..+|.|.+..+. .+.+..+. -+...++ +++|.|||+.||.|-.||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3457779999999999999999999999988 66777775 3555566 99999999999999999999999999999
Q ss_pred EEEE--EeeCCCeeEEEecC
Q 021925 225 LIKT--YVTERPVNAVTMSP 242 (305)
Q Consensus 225 ~~~~--~~~~~~v~~~~~~~ 242 (305)
.+.. +....+|.++-|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 8888 44777888988874
No 339
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.41 E-value=2.4e-06 Score=64.92 Aligned_cols=176 Identities=16% Similarity=0.251 Sum_probs=113.1
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCC-----cceEEEEEcCCC-cEEEEEeCCCcEE
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHN-----GAVWCCDVSRDS-MTLITGSADQTAK 77 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~-----~~v~~i~~~~~~-~~l~s~~~dg~v~ 77 (305)
..|.-.|+++.++.|.+.++++. |=.|.+|+++-.. .+..++.|. .-|++..|+|.. +.+.-.+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 57889999999999998888764 7789999876322 233344454 468899999943 4555666779999
Q ss_pred EEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 78 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
+-|++.......-. . ..... ..+-...-+.+-.+.|..+.|+++
T Consensus 248 l~DlRq~alcdn~~---k----------------------------lfe~~-----~D~v~~~ff~eivsSISD~kFs~n 291 (460)
T COG5170 248 LNDLRQSALCDNSK---K----------------------------LFELT-----IDGVDVDFFEEIVSSISDFKFSDN 291 (460)
T ss_pred ehhhhhhhhccCch---h----------------------------hhhhc-----cCcccchhHHHHhhhhcceEEcCC
Confidence 99998543211000 0 00000 000111122344567888999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCC-cEeeeeccccC---------Cccc---eEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 158 NRTIISAGEDAIVRIWDTETG-KLLKESDKETG---------HKKT---ITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---------~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
|+++++-+. -+|++||.+.. .++.++..... .... -..+.|+.|.+.+++|+..+..-++-.
T Consensus 292 gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 292 GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 999987654 68999999864 45665532100 1112 235678888888999998887777753
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.39 E-value=0.0009 Score=56.15 Aligned_cols=229 Identities=11% Similarity=0.017 Sum_probs=118.7
Q ss_pred ceEEEEEcCCCCEEEEe-eCCC----ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC-----------c
Q 021925 12 PLTYLKYNKDGDLLFSC-AKDH----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-----------T 75 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~-~~dg----~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----------~ 75 (305)
.+...+++|+|+++|.+ +..| .+++.|+++++.+...-.. ..-..+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999998865 3333 5999999999876532111 1123499999987766554332 3
Q ss_pred EEEEecCCCCee--EEEeeCC--C-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe-
Q 021925 76 AKLWNVETGAQL--FTFNFDS--P-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI- 149 (305)
Q Consensus 76 v~vwd~~~~~~~--~~~~~~~--~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 149 (305)
|..|.+.+.... ..+..+. . ...+..+++++++++....... ...+.+.+..... ........+......+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~--~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGG--SPDAKPKLLSPREDGVE 280 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTT--TSS-SEEEEEESSSS-E
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccC--CCcCCcEEEeCCCCceE
Confidence 778888766543 3444222 2 4578889999998876543333 2333333333211 1122333333333333
Q ss_pred eEEEEcCCCCEEEEee---CCCcEEEEeCCCCcE---eeeeccccCCcc--ceEEEEEcCCCCEEEEEeCCC--eEEEEE
Q 021925 150 NRAVWGPLNRTIISAG---EDAIVRIWDTETGKL---LKESDKETGHKK--TITSLAKAADGSHFLTGSLDK--SAKLWD 219 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~i~iwd 219 (305)
..+... .+.+++... ..+.|.-.++..... ...+. .+.. .+..+.... +.+++....++ .|++++
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEE
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEE
Confidence 334333 344444332 246787788877652 21222 2333 455554432 23444444454 488899
Q ss_pred cCCceEEEEEe--eCCCeeEEEecCCCCcEEE
Q 021925 220 ARTLELIKTYV--TERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 220 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~ 249 (305)
+..+....... ..+.|..+...++++.+..
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~ 387 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRF 387 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEE
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEE
Confidence 88444444444 2333455555555554443
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=0.00022 Score=53.35 Aligned_cols=82 Identities=12% Similarity=0.028 Sum_probs=62.3
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc-eEEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA-RSVD 100 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v-~~~~ 100 (305)
|++++.|+..|.+++-+..+|+....+..-..-=......+++..+..++.|++.+..|.++..++.+.+.++.+ .+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 567888999999999999999887777643222123345678889999999999999999999999887755443 3445
Q ss_pred Eec
Q 021925 101 FAV 103 (305)
Q Consensus 101 ~~~ 103 (305)
..|
T Consensus 143 i~~ 145 (354)
T KOG4649|consen 143 IAP 145 (354)
T ss_pred ecC
Confidence 555
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.37 E-value=0.00064 Score=53.65 Aligned_cols=237 Identities=8% Similarity=0.030 Sum_probs=133.4
Q ss_pred EEEEcCCCCEEEEeeC----------CCceEEEEcCCCeeeEEecCCC-------cceEEEEEcCCCcEEEEEeC--CCc
Q 021925 15 YLKYNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT 75 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~--dg~ 75 (305)
.+..+|+++.+++++. .-.|.+||..+.++...+.--. .....++++.|+++++.... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 3567899998887532 3378999999987776543211 12234577888988876543 567
Q ss_pred EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE----EEeccCCC-ee
Q 021925 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQGR-IN 150 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-i~ 150 (305)
|.|-|+...+.+..+..++...-.-.. +..+...|.++.... ..+. ..++... .+.....+ +.
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~~iyP~~-~~~F~~lC~DGsl~~------v~Ld-----~~Gk~~~~~t~~F~~~~dp~f~ 187 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCWLIYPSG-NRGFSMLCGDGSLLT------VTLD-----ADGKEAQKSTKVFDPDDDPLFE 187 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEEEEEEEE-TTEEEEEETTSCEEE------EEET-----STSSEEEEEEEESSTTTS-B-S
T ss_pred EEEEECCCCceeeeecCCCEEEEEecC-CCceEEEecCCceEE------EEEC-----CCCCEeEeeccccCCCCccccc
Confidence 999999999888887766543333222 334555555433221 1111 0111111 11111222 22
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeecccc-------CCccceEEEEEcCCCCEEEEEeC---CC-----
Q 021925 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET-------GHKKTITSLAKAADGSHFLTGSL---DK----- 213 (305)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~---dg----- 213 (305)
.-++...+..++--+.+|.|+--|+...... ..+.... -..+.-.-+++++..+.|++--. +|
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 3344455555666778899999888765422 2221110 01223344677775555544322 22
Q ss_pred --eEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEeeC-CcEEEEEEeehhhhhh
Q 021925 214 --SAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGEP-QTIKFMLLVYLFVLFL 268 (305)
Q Consensus 214 --~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~~~~~ 268 (305)
.|.++|+.+++.+..+..+.++.+++.+.+.+ +|++.+. ++. +.+++...
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~-----l~v~D~~t 321 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGT-----LDVYDAAT 321 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTE-----EEEEETTT
T ss_pred ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCe-----EEEEeCcC
Confidence 38888999999999999777899999998876 4544443 444 44454443
No 343
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.36 E-value=0.00078 Score=54.18 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=50.8
Q ss_pred eeEEEEcCCCCEEEEee-----CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC----------
Q 021925 149 INRAVWGPLNRTIISAG-----EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---------- 213 (305)
Q Consensus 149 i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------- 213 (305)
+..=-|.|+|..|.--+ .+..|.-+|+.+++.....+ ......+-.++||++++-=+.|.
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEEEEEE-------------
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 34456889997665322 24467778888776543222 22344566678998776544432
Q ss_pred ------eEEEEEcCCceEEEEEeeCC---------C--eeEEEecCCCCcEEEeeCCc
Q 021925 214 ------SAKLWDARTLELIKTYVTER---------P--VNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 214 ------~i~iwd~~~~~~~~~~~~~~---------~--v~~~~~~~~~~~l~~~~~~~ 254 (305)
-|++++++.++......|.. . =....|+|||++++..++..
T Consensus 315 ~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~ 372 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDME 372 (386)
T ss_dssp ------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TT
T ss_pred eecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCC
Confidence 46778888776543333321 1 24678999999987765443
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.1e-05 Score=63.58 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=98.8
Q ss_pred eEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeC
Q 021925 34 PTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT 112 (305)
Q Consensus 34 v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 112 (305)
|+..+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~------------------- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY------------------- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-------------------
Confidence 44444444555555667788999999999655 7888999999999999987766554322
Q ss_pred CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-eeeeccccCC
Q 021925 113 DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-LKESDKETGH 190 (305)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~ 190 (305)
..+++++|.-+. .+|..|-..|.|.+||++..+- +..+.. .-.
T Consensus 236 ----------------------------------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a-~~t 280 (463)
T KOG1645|consen 236 ----------------------------------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA-NVT 280 (463)
T ss_pred ----------------------------------CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh-hhc
Confidence 456667777665 4677888899999999986442 222211 012
Q ss_pred ccceEEEEE------cCCCCEEEEEeCCCeEEEEEcCC--c--eEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 191 KKTITSLAK------AADGSHFLTGSLDKSAKLWDART--L--ELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 191 ~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
..+|..++. .+.|.+|+....+ ...|++.. + -++..+...+...+++.++..+.+++.-
T Consensus 281 ~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 281 INPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred cCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEe
Confidence 233433332 2234444444433 45565432 2 2233333455666777777666665543
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.29 E-value=1.7e-07 Score=77.65 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=105.5
Q ss_pred EecccccceEEEEEcC-CCCEEEEee----CCCceEEEEcCCC--eee--EEecC-CCcceEEEEEcCCCcEEEEEeCCC
Q 021925 5 LMKGHERPLTYLKYNK-DGDLLFSCA----KDHTPTVWFADNG--ERL--GTYRG-HNGAVWCCDVSRDSMTLITGSADQ 74 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~-~~~~l~s~~----~dg~v~iw~~~~~--~~~--~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg 74 (305)
+..+|..++++++|++ |.+.||+|- .|..+.|||+.++ .+. ..+.+ -.....+++|..+.+++++|...+
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 4567888999999999 667788773 3578999999876 221 22222 334566889998889999999999
Q ss_pred cEEEEecCCCCe-eEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925 75 TAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 75 ~v~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (305)
.++++|++.... ...+ ....+..+.
T Consensus 177 ~~~ifdlRqs~~~~~sv------------------------------------------------------nTk~vqG~t 202 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSV------------------------------------------------------NTKYVQGIT 202 (783)
T ss_pred hhhhhhhhhhhhhhhhh------------------------------------------------------hhhhcccce
Confidence 999999873211 1100 011233455
Q ss_pred EcC-CCCEEEEeeCCCcEEEEe-CCC-CcEeeeecc-ccCCccceEEEEEcCCCC-EEEEEeC-CCeEEEEEcC
Q 021925 154 WGP-LNRTIISAGEDAIVRIWD-TET-GKLLKESDK-ETGHKKTITSLAKAADGS-HFLTGSL-DKSAKLWDAR 221 (305)
Q Consensus 154 ~~~-~~~~l~~~~~dg~i~iwd-~~~-~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~~~~~-dg~i~iwd~~ 221 (305)
.+| .++|+++-. ||.|.+|| .++ ..++..+.. .......+..++|+|... .+++.+. .++|+++|+.
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 667 566776655 99999999 333 233333321 111234589999999543 3455544 5789999976
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.24 E-value=0.00039 Score=56.89 Aligned_cols=217 Identities=13% Similarity=0.066 Sum_probs=114.2
Q ss_pred cCCCCEEEEee---------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 19 NKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 19 ~~~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
|||+++++... ..+.+.|+|+++++....... ...+....|+|+|+.++... ++.|.+.+..+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888877642 346889999998765443332 56789999999999988875 47899999877744332
Q ss_pred EeeC------------------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 90 FNFD------------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 90 ~~~~------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
...+ ..-..+-|+|+++.++...-+. ..+....+........ ..-.+..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~----~~v~~~~~~~~~~~~~---------~yp~~~~ 145 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE----REVPEYPLPDYSPPDS---------QYPEVES 145 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-----TTS-EEEEEEESSSTE---------SS-EEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC----cCCceEEeeccCCccc---------cCCcccc
Confidence 2211 2346788999999888764211 1111111111000000 0001222
Q ss_pred EEEcCCCCEEEEeeCCC--cEEEEeCCCCcEeeeec--cccCCccceEEEEEcCCCCEEEEE--eCC---CeEEEEEcCC
Q 021925 152 AVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTG--SLD---KSAKLWDART 222 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~--~~d---g~i~iwd~~~ 222 (305)
+.+-- .|..+. .+.++|+.+++....-. ........+..+.|.++++.|+.. +.+ -.+.++|..+
T Consensus 146 ~~YPk------~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t 219 (353)
T PF00930_consen 146 IRYPK------AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST 219 (353)
T ss_dssp EE--B------TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred cccCC------CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence 22211 122222 46678888776532111 112346778999999999844433 222 2477778877
Q ss_pred ceEEEEEe--eCCCe---eEEEec-CCCCc-EEEeeCCcEE
Q 021925 223 LELIKTYV--TERPV---NAVTMS-PLLDH-VCIGEPQTIK 256 (305)
Q Consensus 223 ~~~~~~~~--~~~~v---~~~~~~-~~~~~-l~~~~~~~~~ 256 (305)
++...... ....| ....+. +++.. +.....+|..
T Consensus 220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~ 260 (353)
T PF00930_consen 220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYR 260 (353)
T ss_dssp TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence 65543333 23222 345554 55554 4444555543
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.23 E-value=8.5e-05 Score=61.83 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=78.2
Q ss_pred eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (305)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 171 (305)
....+..+.++|+++.+++++++...+..... ... ...+.-...+|.+.++ +|+-...+.|.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~------------~r~-----k~~G~g~~~vw~~~n~-yAv~~~~~~I~ 92 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALA------------WRN-----KAFGSGLSFVWSSRNR-YAVLESSSTIK 92 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTT------------TEE-----EEEEE-SEEEE-TSSE-EEEE-TTS-EE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccC------------Ccc-----cccCceeEEEEecCcc-EEEEECCCeEE
Confidence 45568899999999999998776555444110 011 1124456688998554 66666688899
Q ss_pred EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
++.--+.+..+.+. ....+..+-. |..|+..+.+ .|.+||..+++.++++.... |..+.|+++|++++..+
T Consensus 93 I~kn~~~~~~k~i~----~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 93 IYKNFKNEVVKSIK----LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVT 163 (443)
T ss_dssp EEETTEE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-
T ss_pred EEEcCccccceEEc----CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEe
Confidence 96322222222343 2223444433 7777777655 89999999999999998554 89999999999999998
Q ss_pred CCcEE
Q 021925 252 PQTIK 256 (305)
Q Consensus 252 ~~~~~ 256 (305)
.+...
T Consensus 164 ~~~i~ 168 (443)
T PF04053_consen 164 KDSIY 168 (443)
T ss_dssp S-SEE
T ss_pred CCeEE
Confidence 88754
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.17 E-value=8.6e-06 Score=42.24 Aligned_cols=39 Identities=44% Similarity=0.642 Sum_probs=34.4
Q ss_pred CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 42 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
++....+..|...|.++.|.++++.+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999889999999999999996
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0028 Score=52.40 Aligned_cols=233 Identities=12% Similarity=0.083 Sum_probs=146.6
Q ss_pred ceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEE
Q 021925 12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
....+...+++..+.... ....+..-+............-...-..++.++.++.+ ++...++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 345667788885444433 22245555444222222122111334677888888754 4455568999999998888888
Q ss_pred EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCC
Q 021925 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDA 168 (305)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 168 (305)
.........++++++++.+.++.... .... +..+.. ...+.......-..+ ..++++|+++.++... .++
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~--vsvid~----~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGN--GNNT--VSVIDA----ATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEeccc--CCce--EEEEeC----CCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCC
Confidence 88888999999999998888876532 1111 111111 122333332222223 8899999999766665 689
Q ss_pred cEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceEEEE-EeeCC-CeeEEEecC
Q 021925 169 IVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKT-YVTER-PVNAVTMSP 242 (305)
Q Consensus 169 ~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~-~~~~~-~v~~~~~~~ 242 (305)
.|.+.|.......+ .......-......+.++|+|..+...... +.+...|..++..... ...+. ....+..+|
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 99999987665553 110011233445678899999976655443 5999999998887766 22222 567889999
Q ss_pred CCCcEEEeeCC
Q 021925 243 LLDHVCIGEPQ 253 (305)
Q Consensus 243 ~~~~l~~~~~~ 253 (305)
+|+.+.+....
T Consensus 263 ~g~~~yv~~~~ 273 (381)
T COG3391 263 AGKAAYVANSQ 273 (381)
T ss_pred CCCEEEEEecC
Confidence 99998888544
No 350
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.13 E-value=0.00094 Score=57.97 Aligned_cols=193 Identities=10% Similarity=0.108 Sum_probs=104.7
Q ss_pred cceEEEEEcCCCCEEEEee------CCCceEEEEcC-CCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC----------
Q 021925 11 RPLTYLKYNKDGDLLFSCA------KDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---------- 73 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~------~dg~v~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---------- 73 (305)
..+.+.+.+|+|+.+|... .|+.-.||-.. .+.......+ .....-.|+|+|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678899999999887765 24444455332 2333222232 237889999998877776532
Q ss_pred --CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC--CCceEEEEeccCCCe
Q 021925 74 --QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--GGESVLILKGPQGRI 149 (305)
Q Consensus 74 --g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i 149 (305)
+.+.+.+++.++... ..+..+..+.|+|+|..++...++ .+.+..+.+..... -..+......-...+
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g------~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGG------KVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECC------EEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 233333444433322 446689999999999988876642 33333333221110 011111122233346
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 150 NRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
.++.|.+++..+ .+..++.-.+|.+.- +.....+. ......++..++-+++ .++....+|.+.+
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-SRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEecCCccccccC-CCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 889999999854 555555444554432 22211112 1123566777776653 4555566664433
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.12 E-value=2.4e-05 Score=65.94 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=86.0
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
.+.--+++..+++++.|+.-|.+++|+...++....-. .+....+..+..+++..++|.|+..|.|.++.+....+..
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~--~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN--EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccc--cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34444566678999999999999999987665443322 1345566777889999899999999999999887643322
Q ss_pred E-----Ee--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 228 T-----YV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 228 ~-----~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
. .. |...|++++|++++..+.+|.+.|......+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 22 577899999999999999999998876655544
No 352
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.00077 Score=50.53 Aligned_cols=102 Identities=10% Similarity=-0.018 Sum_probs=74.0
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CCee
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVN 236 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~ 236 (305)
|++++.|+..|.+++.+.++|.....+... ..--......+++..+..|+.|++.+..|.++..++...+-+ .-..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceec
Confidence 667999999999999999999888777622 211123345778999999999999999999999999887733 3334
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
+-+..|-...|.++...|..+-++..
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccC
Confidence 55666744455566556655544444
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.07 E-value=0.00091 Score=43.50 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 13 LTYLKYNK---DG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 13 v~~~~~~~---~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
|++|++.. +| +.|++|+.|..|++|+- .+.+..+.. .+.|+++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 67777765 33 58999999999999973 466677764 466788877665 57888999999999974 56667
Q ss_pred EEeeCCCceEEEEecC
Q 021925 89 TFNFDSPARSVDFAVG 104 (305)
Q Consensus 89 ~~~~~~~v~~~~~~~~ 104 (305)
..+.+..+.++.+..-
T Consensus 76 RiKSK~~~~~~~~~D~ 91 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDI 91 (111)
T ss_pred eeccCCCeEEEEEEcC
Confidence 7777777887776653
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0039 Score=53.45 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=111.4
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCc------ce--EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------AV--WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~------~v--~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 93 (305)
+..++.++.++.|.-.|..+++.+-++..... .+ ..+... ++..++.++.+|.|.-+|.++++.+......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34567778889999999999988876653322 01 011111 2257888888999999999999999888754
Q ss_pred CCc------e-EEEEecCCceEEEeCCcce---eeeeeEEEEEeecccCCCCCceEEEEec-------------------
Q 021925 94 SPA------R-SVDFAVGDKLAVITTDPFM---ELNSAIHVKRIARDPADQGGESVLILKG------------------- 144 (305)
Q Consensus 94 ~~v------~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 144 (305)
... . ...+. ++.+++....... ...+.+...+. ..++..-....
T Consensus 140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~------~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDV------ETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEEC------CCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 431 1 12222 2333332211100 00111111111 11111111111
Q ss_pred cC-CCe-eEEEEcCCCCEEEEeeCCC------------------cEEEEeCCCCcEeeeeccccCCc--------cce-E
Q 021925 145 PQ-GRI-NRAVWGPLNRTIISAGEDA------------------IVRIWDTETGKLLKESDKETGHK--------KTI-T 195 (305)
Q Consensus 145 ~~-~~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~--------~~v-~ 195 (305)
+. ..+ ...+..+.+..++.++.++ .|.-+|..+++.+...+.. .+. .++ .
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLA 291 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEE
Confidence 00 111 1345555567777776655 7999999999998877532 111 111 1
Q ss_pred EEEEcCCCC---EEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 196 SLAKAADGS---HFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 196 ~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+. .-++. .++.++.+|.+...|.++|+.+....
T Consensus 292 ~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 292 DIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred ecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 111 11333 57888899999999999999987765
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=1.2e-06 Score=72.89 Aligned_cols=199 Identities=15% Similarity=0.161 Sum_probs=127.5
Q ss_pred CcceEEEEEcCC--CcEEEEEeCCCcEEEEecCCCCee-EE--EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEE
Q 021925 52 NGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGAQL-FT--FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (305)
Q Consensus 52 ~~~v~~i~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (305)
...+.|+++.-+ ...++.|..+|.|.+-..+...-. .. -.+..++++++|++-+.-.++++-........+.+|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345777777653 346788888999999987655432 22 2366788999999854444444445556677788888
Q ss_pred eecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCE
Q 021925 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSH 205 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 205 (305)
+..............- +......+++|-.+.+.+.+|.....+.++|++........ -....+..+..+| .+.+
T Consensus 136 i~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNY 210 (783)
T ss_pred cccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCc
Confidence 8765332222221111 24445568999988888999988889999999843222111 1344566778888 6667
Q ss_pred EEEEeCCCeEEEEE-cCCc-eEEEEEeeC-----CCeeEEEecCCCC-cEEEeeCCcEE
Q 021925 206 FLTGSLDKSAKLWD-ARTL-ELIKTYVTE-----RPVNAVTMSPLLD-HVCIGEPQTIK 256 (305)
Q Consensus 206 l~~~~~dg~i~iwd-~~~~-~~~~~~~~~-----~~v~~~~~~~~~~-~l~~~~~~~~~ 256 (305)
+++-. ||.|.+|| .++- .++..+.+. ..+..++|.|... .+++...+...
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t 268 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT 268 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence 77665 99999999 3332 233333222 2488999999764 46666666654
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.01 E-value=0.00035 Score=61.73 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=88.1
Q ss_pred CcEEEEE-eCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee--eeeEEEEEeecccCCCCCceEE
Q 021925 64 SMTLITG-SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARDPADQGGESVL 140 (305)
Q Consensus 64 ~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 140 (305)
.++|+.- .....|+-.|++.|+.+..+.....+.-..+.|+.+..-........- ...+..++.+.. ..+.+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~----~~k~v~ 568 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS----GNKLVD 568 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCC----CCceee
Confidence 3444433 346789999999999999999666554555555433221111111100 122223333221 111111
Q ss_pred ---EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 141 ---ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 141 ---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
..........|++-+.+| +||.|+.+|.||+||-- ++.-++. .++...+|..+..+.||+++++.+ +..+.+
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~--lp~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTA--LPGLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhc--CCCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 111234456777777666 69999999999999943 3322222 226678999999999999987766 556777
Q ss_pred EEc
Q 021925 218 WDA 220 (305)
Q Consensus 218 wd~ 220 (305)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 775
No 357
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=5.3e-06 Score=71.80 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=105.7
Q ss_pred eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (305)
Q Consensus 43 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (305)
+..++++.|....+|++|+-+.++|+.|+..|.|+++++.+|......
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-------------------------------- 1139 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-------------------------------- 1139 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc--------------------------------
Confidence 445677788999999999999999999999999999999988654432
Q ss_pred EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--CcEEEEeCCC-CcEeeeeccccCCccceEEEEE
Q 021925 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED--AIVRIWDTET-GKLLKESDKETGHKKTITSLAK 199 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~ 199 (305)
.+|.+.++-+.-+.+|..+++.+.- .-..+|++.. +...+.+. .-.++.|
T Consensus 1140 --------------------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-------ed~~vkF 1192 (1516)
T KOG1832|consen 1140 --------------------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-------EDKAVKF 1192 (1516)
T ss_pred --------------------cccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-------ccceeeh
Confidence 4567777777777777766655432 3567999864 34444443 2245677
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCCCCcEE
Q 021925 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-----TERPVNAVTMSPLLDHVC 248 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~ 248 (305)
+..-..-+.|+.-....+||+.++.++.++- ....-+++.|+|+..+++
T Consensus 1193 sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1193 SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7654444566666679999999998877643 222347888999987765
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=3.3e-05 Score=39.91 Aligned_cols=38 Identities=29% Similarity=0.643 Sum_probs=33.2
Q ss_pred ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEe
Q 021925 137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (305)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 174 (305)
+....+..|...+.++.|+|+++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556678888999999999999999999999999996
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.95 E-value=0.0065 Score=49.08 Aligned_cols=183 Identities=13% Similarity=0.145 Sum_probs=101.2
Q ss_pred CCEEEEeeC----------CCceEEEEcCCC----eeeEEe--cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 22 GDLLFSCAK----------DHTPTVWFADNG----ERLGTY--RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 22 ~~~l~s~~~----------dg~v~iw~~~~~----~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
.++|+.|+. .|.|.++++.+. ..+..+ ...+++|.+++-. ++. |+.+. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777753 288999999884 222222 2357889998877 444 44443 3789999998888
Q ss_pred -eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE--eccCCCeeEEEEcCCCCEEE
Q 021925 86 -QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 86 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~ 162 (305)
....-....+.........+.+++++.- ...+.+..... .......+ ......++++.+-++++.++
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~-----~~sv~~~~~~~-----~~~~l~~va~d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDA-----MKSVSLLRYDE-----ENNKLILVARDYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEES-----SSSEEEEEEET-----TTE-EEEEEEESS-BEEEEEEEE-SSSEEE
T ss_pred cchhhheecceEEEEEEeccccEEEEEEc-----ccCEEEEEEEc-----cCCEEEEEEecCCCccEEEEEEecCCcEEE
Confidence 5555555555555555554556666643 22233332221 11112222 22345578888886667899
Q ss_pred EeeCCCcEEEEeCCC-------Cc-EeeeeccccCCccceEEE---EEcC--CCC------EEEEEeCCCeEEEE
Q 021925 163 SAGEDAIVRIWDTET-------GK-LLKESDKETGHKKTITSL---AKAA--DGS------HFLTGSLDKSAKLW 218 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~-------~~-~~~~~~~~~~~~~~v~~~---~~~~--~~~------~l~~~~~dg~i~iw 218 (305)
.+..+|.+.++.... +. .+...... .....|+++ .+.| .+. .++.++.+|.|...
T Consensus 189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999999998763 11 11111111 234567777 5445 122 37788888888744
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.94 E-value=0.0056 Score=48.23 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=117.4
Q ss_pred CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE-----------
Q 021925 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF----------- 88 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~----------- 88 (305)
..++.|+.|+.+| +.+++.........+. +...|..+...|+-+.|++-+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3577899999998 8999983333222332 233499999999877776665 4999999987554433
Q ss_pred ----EEeeCCCceEEE---EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC-ceEEEEeccCCCeeEEEEcCCCCE
Q 021925 89 ----TFNFDSPARSVD---FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 89 ----~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
.+.....+..++ -......++++... .+.++...... ... .....+. -...+.+++|. ++.
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk------~i~i~~~~~~~--~~f~~~~ke~~-lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK------KILIYEWNDPR--NSFSKLLKEIS-LPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC------EEEEEEEECCc--ccccceeEEEE-cCCCcEEEEEe--CCE
Confidence 112222333333 11233444444332 34444443311 111 2333333 23678888888 566
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeecccc---------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--EE
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TY 229 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 229 (305)
++.|..+ ...+.|+.++.....+.... ....++..+... ++.+|++. |..-.+.|. .|++.+ .+
T Consensus 151 i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 151 ICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred EEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence 7777754 47889998766544332111 112234444443 45566543 333344444 454443 44
Q ss_pred eeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 230 VTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 230 ~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
.-...+.++++. .++|++-+.+.
T Consensus 226 ~W~~~p~~~~~~--~pyli~~~~~~ 248 (275)
T PF00780_consen 226 QWSSAPQSVAYS--SPYLIAFSSNS 248 (275)
T ss_pred EcCCchhEEEEE--CCEEEEECCCE
Confidence 445566777774 35777766655
No 361
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.92 E-value=0.011 Score=50.73 Aligned_cols=224 Identities=16% Similarity=0.149 Sum_probs=119.0
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCcc--eEEEEEcC--CCcEEEEEe---------CCCcEEEEecCCCCeeEE
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGA--VWCCDVSR--DSMTLITGS---------ADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--v~~i~~~~--~~~~l~s~~---------~dg~v~vwd~~~~~~~~~ 89 (305)
..++.++.+|.|+-+|.++|+.+-++...... -..+.-+| .+..++.++ .+|.|.-+|.++++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57777888999999999999998777643221 01111122 123455553 367899999999999988
Q ss_pred EeeCCC---------------------c-eEEEEecCCceEEEeCCcceee-------------eeeEEEEEeecccCCC
Q 021925 90 FNFDSP---------------------A-RSVDFAVGDKLAVITTDPFMEL-------------NSAIHVKRIARDPADQ 134 (305)
Q Consensus 90 ~~~~~~---------------------v-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 134 (305)
+..... + ...++.+.+..++++..+.... .+.+...+. .
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~------~ 264 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA------D 264 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC------C
Confidence 764211 0 1234444444444444221000 001111111 1
Q ss_pred CCceEEEEe--ccCC----CeeEEEEc----CCCC---EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC
Q 021925 135 GGESVLILK--GPQG----RINRAVWG----PLNR---TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (305)
Q Consensus 135 ~~~~~~~~~--~~~~----~i~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 201 (305)
.++..-..+ .+.. ........ -++. .++.++.+|.+...|.++++.+...... ...++.+|
T Consensus 265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~ 338 (488)
T cd00216 265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP 338 (488)
T ss_pred CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC
Confidence 222222221 1100 00000000 1232 5778888999999999999988776421 11123334
Q ss_pred CCCEEEEE------------------eCCCeEEEEEcCCceEEEEEeeC---------CCeeEEEecCCCCcEEEeeCCc
Q 021925 202 DGSHFLTG------------------SLDKSAKLWDARTLELIKTYVTE---------RPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 202 ~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
+ .++.+ ..+|.+.-.|+.+|+.+.+.... .+...-.....+..|++++.++
T Consensus 339 -~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG 416 (488)
T cd00216 339 -G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG 416 (488)
T ss_pred -c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC
Confidence 2 23222 24688999999999988877643 1211111123456777777777
Q ss_pred EEEEEE
Q 021925 255 IKFMLL 260 (305)
Q Consensus 255 ~~~~~~ 260 (305)
....+.
T Consensus 417 ~l~ald 422 (488)
T cd00216 417 YFRAFD 422 (488)
T ss_pred eEEEEE
Confidence 644433
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.91 E-value=0.002 Score=41.95 Aligned_cols=98 Identities=10% Similarity=0.174 Sum_probs=67.2
Q ss_pred eeEEEEcC---CC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 149 INRAVWGP---LN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 149 i~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
|+++++.. +| +.|++|+.|..|++|+- ...+..+. ....|++++-... ..++.+-.+|+|-+|+- .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT----ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe----cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence 44555443 33 68999999999999984 46677775 5677888887766 56899999999999975 34
Q ss_pred EEEEEeeCCCeeEEEecCC---CC-cEEEeeCCcE
Q 021925 225 LIKTYVTERPVNAVTMSPL---LD-HVCIGEPQTI 255 (305)
Q Consensus 225 ~~~~~~~~~~v~~~~~~~~---~~-~l~~~~~~~~ 255 (305)
.+...+....+.++++..- |. -|++|-++|.
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence 4455555555666665432 22 4777766654
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.0025 Score=48.56 Aligned_cols=190 Identities=18% Similarity=0.219 Sum_probs=113.5
Q ss_pred EEcCCCCEEEEeeCC-----CceEEEEcCCC-eeeEEecCCCcceEEEEEcCCCcEEEEEeC------------------
Q 021925 17 KYNKDGDLLFSCAKD-----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSA------------------ 72 (305)
Q Consensus 17 ~~~~~~~~l~s~~~d-----g~v~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------------------ 72 (305)
.|||||++|++.-.| |.|-|||...+ +.+..+..|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 589999999876433 78999998754 456778888888899999999999887643
Q ss_pred CCcEEEEecCCCCeeEEEee-----CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec---
Q 021925 73 DQTAKLWNVETGAQLFTFNF-----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--- 144 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 144 (305)
.-.+.+.|..+++.+.+... ...++.++..+++...+.+--.....+....+... ..+++...+..
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~------~~g~~l~~~~~pee 273 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF------RKGEPLEFLDLPEE 273 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec------cCCCcCcccCCCHH
Confidence 12344555556665555443 34577788888887776653111000000000000 11122222211
Q ss_pred ----cCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 145 ----PQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 145 ----~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
-...|-+++.+.+..+++..+- .+...+||..++..+..-... ....++ +...-++..+.+|.+.++.
T Consensus 274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-----daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-----DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----ccccce--eccCceEEecCCceEEecc
Confidence 1234667787776666665554 456779999999877654321 111222 2334466777788888774
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.86 E-value=7.6e-05 Score=40.51 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=33.7
Q ss_pred CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee
Q 021925 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER 44 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 44 (305)
+++.-+.-...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 3 ~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 3 RQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred ceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 33434445668999999999999999999999999988 4543
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.86 E-value=0.00093 Score=54.99 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA- 132 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (305)
.|+.+.|+++...|+++...|.|.||.....+.... ........+.+.+- ...+....+.++.....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRRF-----------SLNNSPGKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------------GGGSS-SEEE-GGG--T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCcccccc-----------cccCCCcceEEehhhCCc
Confidence 588999999988999999999999998765443320 00000001110000 00001111122221111
Q ss_pred --CCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-----cCCccceEEEEEcC----
Q 021925 133 --DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TGHKKTITSLAKAA---- 201 (305)
Q Consensus 133 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~---- 201 (305)
.+...+...+....++|++++.|. =.+++.|.++|.+.|.|+|....+..-... ......++++.|..
T Consensus 71 ~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 71 SLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp T-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred ccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 112345566677789999999974 458999999999999999987776653211 12345688888763
Q ss_pred -CC---CEEEEEeCCCeEEEEEcC
Q 021925 202 -DG---SHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 202 -~~---~~l~~~~~dg~i~iwd~~ 221 (305)
|+ -.|++|+..|.+.+|.+.
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEe
Confidence 33 358899999999999775
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0072 Score=46.46 Aligned_cols=201 Identities=13% Similarity=0.159 Sum_probs=123.7
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC-CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
.|-...|.++.|+|+.+.|++......-.++=..+|+.+.++.-. -.....|++..++.+.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 455566999999999999999888888888877789988877521 1234667888788777777778888888776654
Q ss_pred eeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
.+...... .+ +.............++|+|....|+.+-
T Consensus 162 ~~~~~~~~---------------------------~i---------------~L~~~~k~N~GfEGlA~d~~~~~l~~aK 199 (316)
T COG3204 162 TVISAKVQ---------------------------KI---------------PLGTTNKKNKGFEGLAWDPVDHRLFVAK 199 (316)
T ss_pred cEEeccce---------------------------EE---------------eccccCCCCcCceeeecCCCCceEEEEE
Confidence 43322200 00 0000111144566789999988888888
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCC-------ccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-----
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGH-------KKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTE----- 232 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----- 232 (305)
+..-+.||........-.......+ -..|.++.|++ .+..|+-+.+++.+.-.|.. |+++..+...
T Consensus 200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~g 278 (316)
T COG3204 200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHG 278 (316)
T ss_pred ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCC
Confidence 8777777766533211111100011 23467778887 45566667777777777755 5545444311
Q ss_pred -----CCeeEEEecCCCCcEEEe
Q 021925 233 -----RPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 233 -----~~v~~~~~~~~~~~l~~~ 250 (305)
.....++..++|..-+++
T Consensus 279 L~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 279 LSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred CcccCCCcceeEECCCCCEEEEe
Confidence 123567777777654443
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.85 E-value=0.009 Score=47.39 Aligned_cols=200 Identities=14% Similarity=0.127 Sum_probs=111.0
Q ss_pred EEEEEcCCCCEEEEee--CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC-CCCeeEEE
Q 021925 14 TYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTF 90 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~ 90 (305)
..++++.||++++..- -..+|.|-|+..++.+.++.- .+...-.-.- + ..+.+-+.||.+.-..+. .|+...+.
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~-~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSG-N-RGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEE-T-TEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecC-C-CceEEEecCCceEEEEECCCCCEeEee
Confidence 3457788888877643 345788889998888887763 3322222222 2 357788899999999887 45544322
Q ss_pred e-----eCCCc-eEEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe----------ccCCCeeEEE
Q 021925 91 N-----FDSPA-RSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----------GPQGRINRAV 153 (305)
Q Consensus 91 ~-----~~~~v-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~ 153 (305)
. ...++ ..-++... +.+++.+..+.+ ...++.... .+...... -..+.-.-++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v------~~~dlsg~~----~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNV------YSADLSGDS----AKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEE------EEEEETTSS----EEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEE------EEEeccCCc----ccccCcccccCccccccCcCCcceeeee
Confidence 1 11111 22233332 344444443221 111111000 00000110 0122334467
Q ss_pred EcCCCCEEEEee---CCC-------cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEE-eCCCeEEEEEcC
Q 021925 154 WGPLNRTIISAG---EDA-------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTG-SLDKSAKLWDAR 221 (305)
Q Consensus 154 ~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~ 221 (305)
+++..+.|+..- .+| .|.++|+.+++.+.++. ...++.+++.+.+.+ +|++. ..++.+.+||..
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 776555444321 111 58888999999999986 456688999998766 55444 458999999999
Q ss_pred CceEEEEEe
Q 021925 222 TLELIKTYV 230 (305)
Q Consensus 222 ~~~~~~~~~ 230 (305)
+|+.++++.
T Consensus 321 tGk~~~~~~ 329 (342)
T PF06433_consen 321 TGKLVRSIE 329 (342)
T ss_dssp T--EEEEE-
T ss_pred CCcEEeehh
Confidence 999999887
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.0016 Score=57.69 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=81.8
Q ss_pred CCCceEEEEeccCCC-eeEEEEcC-----CCCEEEEeeCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCCE
Q 021925 134 QGGESVLILKGPQGR-INRAVWGP-----LNRTIISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSH 205 (305)
Q Consensus 134 ~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ 205 (305)
+.++.+.....+... |..++-.. ....-+.|-.+..+..||.|-.. .+..-...-......+|++-+.+| +
T Consensus 512 e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~ 590 (794)
T PF08553_consen 512 ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-Y 590 (794)
T ss_pred CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-e
Confidence 446677777766644 44443221 12345667778899999998643 221111001244567888888777 6
Q ss_pred EEEEeCCCeEEEEEcCCceEEE-EEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 206 FLTGSLDKSAKLWDARTLELIK-TYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 206 l~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
||+|+.+|.||+||- .++.-+ .+. .+.||..+..+.||++|++.+..-..++-.
T Consensus 591 iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 591 IAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 999999999999994 343332 233 578999999999999998877666544443
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.80 E-value=0.0051 Score=53.60 Aligned_cols=212 Identities=15% Similarity=0.108 Sum_probs=110.1
Q ss_pred CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe------CCCcEEEEecCCCCeeEEEeeCCCceEEEEecC
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 104 (305)
+|.+.-.+-..-.++.-..+....+.+.+++|+|+.++..- .|+.-.+|-...+.....+..........|+|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD 407 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD 407 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC
Confidence 66655443222222222222334678899999999887655 244444443322222233333445888999999
Q ss_pred CceEEEeCCcce-ee-e---eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEE---EeCC
Q 021925 105 DKLAVITTDPFM-EL-N---SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI---WDTE 176 (305)
Q Consensus 105 ~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---wd~~ 176 (305)
+..+....+... .. . ....++.+.. ..++... ...+.|..+.|||||..++... +|.|++ -...
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~v----d~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~ 479 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPV----DASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE 479 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEec----cCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence 887777654311 00 0 1111111111 0111111 2356799999999999888765 477777 4433
Q ss_pred CCcEeeeec---cc-cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceEEEEEe---eCCCeeEEEecCCCCcEE
Q 021925 177 TGKLLKESD---KE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYV---TERPVNAVTMSPLLDHVC 248 (305)
Q Consensus 177 ~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~---~~~~v~~~~~~~~~~~l~ 248 (305)
.+. ..+. .. ......+.++.|.+++.++ ++..++...+|.+. .|.....+. ...++.+++-+++ .++
T Consensus 480 ~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iy 554 (591)
T PRK13616 480 DGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVY 554 (591)
T ss_pred CCc--eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEE
Confidence 443 1121 01 1223346889999998854 55555544455433 122222212 2455677777763 455
Q ss_pred EeeCCcE
Q 021925 249 IGEPQTI 255 (305)
Q Consensus 249 ~~~~~~~ 255 (305)
++..++.
T Consensus 555 v~~~~g~ 561 (591)
T PRK13616 555 VTDARAV 561 (591)
T ss_pred EEcCCce
Confidence 5555553
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.015 Score=48.50 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=49.3
Q ss_pred CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
.+++..++.||+++++|.-..+|.+.+.+..-.+....+.. ........|.|+-+...++.- +..+.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--DSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--CcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 46899999999999999999999999998776666655542 234566788887664333322 34455555
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0011 Score=54.73 Aligned_cols=149 Identities=18% Similarity=0.241 Sum_probs=94.1
Q ss_pred CCcEE-EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee--eeeEEEEEeecccCCCCCceE
Q 021925 63 DSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARDPADQGGESV 139 (305)
Q Consensus 63 ~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 139 (305)
+.++| .++.....|+-.|++.|+.+..+.....|.-+.+.|+.+..-........- +..+..++.+. +....+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv----~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV----QGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccc----cCccee
Confidence 34444 455556778899999999999999888888888888765443333322211 22223333321 111122
Q ss_pred EEEeccC----CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCe
Q 021925 140 LILKGPQ----GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (305)
Q Consensus 140 ~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 214 (305)
...++|+ ....|.+-..+| +++.|+.+|.|++||. .+..-+ .++ +...+|..+..+.+|++|+..+ +..
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlP---gLG~~I~hVdvtadGKwil~Tc-~ty 493 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALP---GLGDAIKHVDVTADGKWILATC-KTY 493 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccc---ccCCceeeEEeeccCcEEEEec-ccE
Confidence 2333332 234455544444 7999999999999997 443333 333 7788999999999999877665 666
Q ss_pred EEEEEcC
Q 021925 215 AKLWDAR 221 (305)
Q Consensus 215 i~iwd~~ 221 (305)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 7776653
No 372
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.55 E-value=0.028 Score=46.11 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=86.0
Q ss_pred EcCCCCEEEEee--C----CCceEEEEcCCCeeeEEecCC---CcceEEEEEcCCCcEEEEEeC----------------
Q 021925 18 YNKDGDLLFSCA--K----DHTPTVWFADNGERLGTYRGH---NGAVWCCDVSRDSMTLITGSA---------------- 72 (305)
Q Consensus 18 ~~~~~~~l~s~~--~----dg~v~iw~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~s~~~---------------- 72 (305)
.-|+|+.++++- . -|-+.+.|-++.+........ ...-..+.|.|..+.++|...
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 347888888752 2 256778887777777666532 223466778887778887532
Q ss_pred ----CCcEEEEecCCCCeeEEEeeCC---CceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEE
Q 021925 73 ----DQTAKLWNVETGAQLFTFNFDS---PARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLIL 142 (305)
Q Consensus 73 ----dg~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 142 (305)
..++.+||+.+.+.++++.... .+..+.|..+ ...-+++.. ....+|.+.+... ....+.+..+
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a------Lss~i~~~~k~~~g~W~a~kVi~i 290 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA------LSSSIWRFYKDDDGEWAAEKVIDI 290 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTEEEEEEEEEE
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe------ccceEEEEEEcCCCCeeeeEEEEC
Confidence 3679999999999999998653 3556666543 444443331 1122222222110 0001111111
Q ss_pred e-----------------ccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCc---Eeeeeccc-------------c
Q 021925 143 K-----------------GPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGK---LLKESDKE-------------T 188 (305)
Q Consensus 143 ~-----------------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~~~-------------~ 188 (305)
. .-..-|+.+..|.|.++|..++ .+|.|+.||+.... .+.++..- .
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~ 370 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGK 370 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccc
Confidence 1 1134579999999999998776 58999999998643 22222100 0
Q ss_pred CCccceEEEEEcCCCCEEEEEe
Q 021925 189 GHKKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 189 ~~~~~v~~~~~~~~~~~l~~~~ 210 (305)
...+...-+..|.||+.|...+
T Consensus 371 ~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 371 RLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---S----EEE-TTSSEEEEE-
T ss_pred ccCCCCCeEEEccCCeEEEEEe
Confidence 1122346677888888776554
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00074 Score=60.25 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=69.8
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~ 236 (305)
+..++.|+..|.+-..|+... +..+.......++|++++|+.+|..++.|-.+|.|.+||+..+++++.+. ++.+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456888998999999998753 22122222456899999999999999999999999999999999998887 555554
Q ss_pred EE---EecCCCCcEEEeeCCc
Q 021925 237 AV---TMSPLLDHVCIGEPQT 254 (305)
Q Consensus 237 ~~---~~~~~~~~l~~~~~~~ 254 (305)
.+ .+..++..++++...|
T Consensus 177 ~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCC
Confidence 44 4455555555554444
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.52 E-value=0.00045 Score=37.50 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=30.8
Q ss_pred CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 190 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 225 (305)
....|..++|+|...+||.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4567999999999999999999999999998 5554
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0029 Score=56.74 Aligned_cols=70 Identities=24% Similarity=0.428 Sum_probs=56.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEE---EcCCCcEEEEEeCCCcEEEEec
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD---VSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~---~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+++- +..++..++++..-|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 57899999999999999999999999999999999988887766555443 3445567888877776 6654
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.39 E-value=0.063 Score=45.17 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=100.7
Q ss_pred ceEEEEEcCCCcEEEEE-eCCC----cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee------eeeE
Q 021925 54 AVWCCDVSRDSMTLITG-SADQ----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL------NSAI 122 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~-~~dg----~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~ 122 (305)
.+....++|++++++.+ +..| .+++.|+++++.+...-.......+.|.+++..++....+.... ...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34467899999988754 3334 49999999997765432222333499999987766654322211 3333
Q ss_pred EEEEeecccCCCCCceEEEEeccCCC--eeEEEEcCCCCEEEEeeC---C-CcEEEEeCCCC----cEeeeeccccCCcc
Q 021925 123 HVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRTIISAGE---D-AIVRIWDTETG----KLLKESDKETGHKK 192 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~~ 192 (305)
..+.+.... .+....+...... ...+..++++++++.... + ..+++.|+..+ .....+.. ...+
T Consensus 205 ~~~~~gt~~----~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--~~~~ 278 (414)
T PF02897_consen 205 YRHKLGTPQ----SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--REDG 278 (414)
T ss_dssp EEEETTS-G----GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--SSSS
T ss_pred EEEECCCCh----HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--CCCc
Confidence 333332211 1223444444433 567889999998775432 3 46888898874 22233321 1222
Q ss_pred ceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceE---EEEE-eeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 193 TITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL---IKTY-VTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
....+... ++.+++... ..+.|.-.++.+... ...+ .+...+.-..+...+++|++....+.
T Consensus 279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 22333333 444444332 246777778776652 2122 24443333344445556666544443
No 377
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.37 E-value=0.081 Score=45.85 Aligned_cols=76 Identities=25% Similarity=0.276 Sum_probs=49.6
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE--EEecCCC
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLL 244 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~ 244 (305)
-|.|.-+|+.+++.....+......... +. -.+..++.++.||.++.+|.++|+.+.+++....+.. +.+.-+|
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~--l~--t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G 515 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV--LA--TAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDG 515 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc--eE--ECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCC
Confidence 3678889999998887765321111111 12 2445777788899999999999999999885544433 2223455
Q ss_pred Cc
Q 021925 245 DH 246 (305)
Q Consensus 245 ~~ 246 (305)
+.
T Consensus 516 ~q 517 (527)
T TIGR03075 516 KQ 517 (527)
T ss_pred EE
Confidence 43
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.35 E-value=0.065 Score=44.42 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=58.1
Q ss_pred EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc-cceEEEEEcC--------------CCCEE
Q 021925 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAA--------------DGSHF 206 (305)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~--------------~~~~l 206 (305)
+......+.+++.+|++++.++...=|.|.++|+.++..++.++....-. +.+....-.. ...+|
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 33445668899999999988887777999999999988777665321100 0111100000 01123
Q ss_pred -EEEeCCCeEEEEEcCCceEEEEEe
Q 021925 207 -LTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 207 -~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+-+-.-|.|.||+++.|..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 345568899999999998887776
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.036 Score=46.27 Aligned_cols=125 Identities=17% Similarity=0.114 Sum_probs=79.4
Q ss_pred CCCceEEEEeccCCCeeEEEEcCCCCE-------EEEeeCCCcEEEEeCCCCcE--eeeec--cccCCccceEEEEEcCC
Q 021925 134 QGGESVLILKGPQGRINRAVWGPLNRT-------IISAGEDAIVRIWDTETGKL--LKESD--KETGHKKTITSLAKAAD 202 (305)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~~~~~~v~~~~~~~~ 202 (305)
+.++.+...+-+.. |+-+.+.|+.+. =+.|-.|..|.-||.+-... +...+ .. .......|.+-..+
T Consensus 364 E~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy-~~k~nFsc~aTT~s 441 (644)
T KOG2395|consen 364 ERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY-STKNNFSCFATTES 441 (644)
T ss_pred ccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc-ccccccceeeecCC
Confidence 34566666666655 777777776531 23455678899999984322 11111 00 12234555555555
Q ss_pred CCEEEEEeCCCeEEEEEcCCceEEEE-Ee-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 203 GSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 203 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
| ++++||.+|.|++||- .+..-++ +. .+.+|..+..+.+|++|++.+..- .+...+.+
T Consensus 442 G-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi~t~~ 501 (644)
T KOG2395|consen 442 G-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLIDTLI 501 (644)
T ss_pred c-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEEEEec
Confidence 5 7999999999999996 5544443 33 678999999999999988765544 33333433
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.26 E-value=0.049 Score=47.59 Aligned_cols=234 Identities=13% Similarity=0.072 Sum_probs=113.8
Q ss_pred CCCCEEEEeeCCC------ceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCC------CcEEEEecCCCCe
Q 021925 20 KDGDLLFSCAKDH------TPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQ 86 (305)
Q Consensus 20 ~~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~~~~~~ 86 (305)
..+..++.||.++ .+..+|..+++......- ....-.+++.. ++...++||.| .++..||..+++=
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 3456777787763 677888877743322211 22233445554 45677888888 3466778777662
Q ss_pred eEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 87 LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 87 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
...-.....-....... +|.+.++++.........+..++..... ...+..+....... -...-+|+..++|+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~----W~~va~m~~~r~~~--gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK----WTPVAPMLTRRSGH--GVAVLGGKLYIIGG 435 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc----ccccCCCCcceeee--EEEEECCEEEEEcC
Confidence 22111222222222222 4555555544333333333333332211 11111111111111 11222466677777
Q ss_pred CCC------cEEEEeCCCCcEee--eeccccCCccceEEEEEcCCCCEEEEEeCCCe-----EEEEEcCCceEEEEEeeC
Q 021925 166 EDA------IVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVTE 232 (305)
Q Consensus 166 ~dg------~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~ 232 (305)
.++ .+..||..+++-.. .+.. ...... ++. -++.+.+.|+.|+. |..||..+.+-...-...
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCccc---ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 543 57888888765432 2221 111122 222 25778888888773 777888766544432222
Q ss_pred CCeeEEEe-cCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 233 RPVNAVTM-SPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 233 ~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
.+...+.. .-+++..++|+.++......+..++
T Consensus 511 ~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 511 SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred cccccccEEEECCEEEEEecccCccccceeEEcC
Confidence 22222222 2345566777777765555555443
No 381
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.22 E-value=0.12 Score=44.82 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=44.7
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecC--CCc--ceEE-EEEcCCCcEEEEEe------CCCcEEEEecCCCCeeEEEe
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRG--HNG--AVWC-CDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~--~v~~-i~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~ 91 (305)
..++.++.|+.+.-.|.++|+.+..... +.. .+.+ .... ++ .++.+. .+|.|.-+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4567778899999999999998876542 111 1111 1111 44 444443 26899999999999988766
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.15 E-value=0.1 Score=43.11 Aligned_cols=110 Identities=10% Similarity=0.046 Sum_probs=60.6
Q ss_pred EEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEE-eCCCC-----cE--e-eeeccc-cCCccceEEEEEcCCCCEEEEE
Q 021925 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW-DTETG-----KL--L-KESDKE-TGHKKTITSLAKAADGSHFLTG 209 (305)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~-----~~--~-~~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 209 (305)
..+.........+++.+++ .+ .++.. .|..+ |.... +. + ..+... ..+......++|.|||.+.++-
T Consensus 65 ~vfa~~l~~p~Gi~~~~~G-ly-V~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~ 141 (367)
T TIGR02604 65 NVFAEELSMVTGLAVAVGG-VY-VATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH 141 (367)
T ss_pred EEeecCCCCccceeEecCC-EE-EeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec
Confidence 3444444456889999888 44 44444 44444 54321 11 1 112211 0123457789999999876654
Q ss_pred eCC-------------------CeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925 210 SLD-------------------KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 210 ~~d-------------------g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
+.. |.|.-+|..+++. ..+. .......++|+|+|+++++-..+
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 421 4466666654443 2333 23345789999999887764433
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.15 E-value=0.062 Score=40.11 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=116.0
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcC-CC--cEEEEEeCCCcEEEEecC--CCCeeEEEe----
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSR-DS--MTLITGSADQTAKLWNVE--TGAQLFTFN---- 91 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~-~~--~~l~s~~~dg~v~vwd~~--~~~~~~~~~---- 91 (305)
+.++..--..|.|.-||..+++..+ ++++. ++.++.+-- ++ .+.+.++..=.+--||.. ......++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 3344444456777778887655332 23321 133333311 22 233333333334456632 222222211
Q ss_pred --eCCCceEEEEecCCceEEEeCCcceeee----eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE-Ee
Q 021925 92 --FDSPARSVDFAVGDKLAVITTDPFMELN----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SA 164 (305)
Q Consensus 92 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~ 164 (305)
.......-..+|+|++............ +.+..|.. ...+..+...-+--+.++|+.+.+.+. +-
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--------~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--------GHQVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--------CCCceeeehhccCCccccccccCcEEEEEc
Confidence 2344556678899998655443221111 11111111 122222333334456788988876655 44
Q ss_pred eCCCcEEEEe--CCCCcE-----eeeeccccC-CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCe
Q 021925 165 GEDAIVRIWD--TETGKL-----LKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV 235 (305)
Q Consensus 165 ~~dg~i~iwd--~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v 235 (305)
+.+-.|.-|| ..+|.. +..++.... .....-.++...+|++.++.-..++|...|..+|+.+.++. ....+
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 5567787777 555432 222221111 11122345567788888888888999999999999999998 56679
Q ss_pred eEEEec-CCCCcEEEee
Q 021925 236 NAVTMS-PLLDHVCIGE 251 (305)
Q Consensus 236 ~~~~~~-~~~~~l~~~~ 251 (305)
+|++|- |+-..+.+..
T Consensus 257 tsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCCCccEEEEEe
Confidence 999996 4444555443
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.14 E-value=0.084 Score=41.60 Aligned_cols=204 Identities=14% Similarity=0.097 Sum_probs=107.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe--------------cCCCcceEEEE--EcCCC-cEEEEEeCC
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--------------RGHNGAVWCCD--VSRDS-MTLITGSAD 73 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~--------------~~~~~~v~~i~--~~~~~-~~l~s~~~d 73 (305)
.+|..+...|+-+.+++-+ |+.+.++++........- ......+...+ -...+ ..|+.+ ..
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~k 113 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VK 113 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-EC
Confidence 3488999999877777654 699999998764433311 11223444444 11233 344444 44
Q ss_pred CcEEEEecCCC-----CeeEEEeeCCCceEEEEecCCceEEEe-CCcceeeeee-EEEEEeecccCCCCCceEEEEeccC
Q 021925 74 QTAKLWNVETG-----AQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQ 146 (305)
Q Consensus 74 g~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
++|.+|..... +....+..+..+..++|. +..++++ .+....++-. .....+...... ...........
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~--~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDS--SSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCC--cchhhhcccCC
Confidence 68999987653 566777899999999999 3344443 3322222211 111111100000 00000001111
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEee--eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
.++..+. -+++.+|++- |..-.+.|. .|++.+ .+. -...+.++++. ..+|+..+. +.|.||++.+++
T Consensus 190 ~~~~~~~-~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~----W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 190 KPLGIFQ-LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ----WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred CceEEEE-eCCceEEEEe--cceEEEEcC-CCCcCcccEEE----cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCc
Confidence 2222233 3344555543 333344454 344433 222 23355566664 347776665 559999999999
Q ss_pred EEEEEee
Q 021925 225 LIKTYVT 231 (305)
Q Consensus 225 ~~~~~~~ 231 (305)
.++.+..
T Consensus 259 lvQ~i~~ 265 (275)
T PF00780_consen 259 LVQTIPL 265 (275)
T ss_pred EEEEEEC
Confidence 9888863
No 385
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.074 Score=46.44 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=95.4
Q ss_pred ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-----eCCCceEEEEecCCce
Q 021925 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKL 107 (305)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ 107 (305)
.|+|++. +|+.+.++.-..+.+-.+.|+.+. .|++...||++.++++- |+.+.... ....|..+.+..+|-.
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE
Confidence 4777775 477776665555588999999765 66777899999999975 33222211 2334555555556655
Q ss_pred EEEeCCcceeeeeeEEE-----------------EEeecccC-------------------CCCCceEEEEeccCCCeeE
Q 021925 108 AVITTDPFMELNSAIHV-----------------KRIARDPA-------------------DQGGESVLILKGPQGRINR 151 (305)
Q Consensus 108 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~ 151 (305)
+...++......+.... |....... .........+....+.+..
T Consensus 142 vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVK 221 (829)
T ss_pred EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEE
Confidence 55555433333222111 11100000 0000111112222356778
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 203 (305)
+..||+.++|+.=..+|.|.+-+....+....+... ...+...++|..+.
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~--~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT--DHDPPKQMAWCGND 271 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC--CCCchHhceeecCC
Confidence 899999999999999999999988877766555421 12223366676544
No 386
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.011 Score=48.94 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=86.6
Q ss_pred CCcEEE-EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925 63 DSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (305)
Q Consensus 63 ~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (305)
+.++|+ .++....++-.|++.|+.+..+.....+ -+.|.|..++.-....+.+.-...-.+..+.... .. ..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~--~g-NKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA--RG-NKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccc--cC-Cceee
Confidence 444444 4555667888899999999999877777 7778875543333222222111111222221111 11 11111
Q ss_pred EeccCCCeeEEEEc----CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 142 LKGPQGRINRAVWG----PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 142 ~~~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
. ......+.-.|+ ....++|.++..|.|++||.-..+....++ +....|..+..+.+|+++++.+ ...+.+
T Consensus 554 ~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP---~lG~aIk~idvta~Gk~ilaTC-k~yllL 628 (776)
T COG5167 554 V-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP---GLGDAIKHIDVTANGKHILATC-KNYLLL 628 (776)
T ss_pred e-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc---ccccceeeeEeecCCcEEEEee-cceEEE
Confidence 1 111112222222 234589999999999999965443333344 6678899999999999887766 456777
Q ss_pred EEcC
Q 021925 218 WDAR 221 (305)
Q Consensus 218 wd~~ 221 (305)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7764
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.08 E-value=0.091 Score=40.82 Aligned_cols=152 Identities=16% Similarity=0.046 Sum_probs=85.0
Q ss_pred ceEEEEEcCCCcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925 54 AVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (305)
.+.+.+++++++.++... .++.-.+|-...+................|.+++.............. .. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~-----~~---~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRV-----VR---DSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEE-----EE---ecC
Confidence 689999999998877655 233344444444444444434557788889999776666543211111 10 000
Q ss_pred CCCCceEEEEeccC-CCeeEEEEcCCCCEEEEee---CCCcEEEEeCCC---CcEe---eeeccccCCccceEEEEEcCC
Q 021925 133 DQGGESVLILKGPQ-GRINRAVWGPLNRTIISAG---EDAIVRIWDTET---GKLL---KESDKETGHKKTITSLAKAAD 202 (305)
Q Consensus 133 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~---~~~~~~~~~~~~v~~~~~~~~ 202 (305)
.........-.... ..|..+.+||||..++... .++.|.+=-+.. +.+. ............++.+.|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 01111111111111 2899999999998877655 357777765432 2011 111111133568899999999
Q ss_pred CCEEEEEeCCC
Q 021925 203 GSHFLTGSLDK 213 (305)
Q Consensus 203 ~~~l~~~~~dg 213 (305)
+.+++.+...+
T Consensus 177 ~~L~V~~~~~~ 187 (253)
T PF10647_consen 177 STLVVLGRSAG 187 (253)
T ss_pred CEEEEEeCCCC
Confidence 98776665543
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.07 E-value=0.081 Score=44.98 Aligned_cols=148 Identities=15% Similarity=0.256 Sum_probs=87.3
Q ss_pred cceEEEEEcCCCCEE-EEee--CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC----CcEEEEEeCCCcEEEEecC-
Q 021925 11 RPLTYLKYNKDGDLL-FSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SMTLITGSADQTAKLWNVE- 82 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l-~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~s~~~dg~v~vwd~~- 82 (305)
.+|..++|. ||+.+ +|.- .+|.++.=| .+.+..| +.|.++.|.|- ...|+.......|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478889997 55544 4432 234433322 2233333 46899999983 3345555566899999875
Q ss_pred ----CCCeeEE----Ee--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925 83 ----TGAQLFT----FN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 83 ----~~~~~~~----~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (305)
+++.+.. +. .+--...+.|+|....+++-+.....+...++.. ...+..--...+.|.|.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d----------~srVkaDi~~~G~IhCA 161 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCD----------SSRVKADIKTSGLIHCA 161 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeC----------CceEEEeccCCceEEEE
Confidence 2222222 21 2334567889999998888765444333333221 12222223567889999
Q ss_pred EEcCCCCEEEEee-CCCcEEEEeCC
Q 021925 153 VWGPLNRTIISAG-EDAIVRIWDTE 176 (305)
Q Consensus 153 ~~~~~~~~l~~~~-~dg~i~iwd~~ 176 (305)
+|.+||+.|+.+- ..=.-++||-.
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEecCc
Confidence 9999998777553 23356788854
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.1 Score=40.23 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=130.5
Q ss_pred CCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCc-EEEEecCCCCeeEEEeeCC---CceEEEEecCCceEEEeCCcc
Q 021925 41 NGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT-AKLWNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPF 115 (305)
Q Consensus 41 ~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~ 115 (305)
.|+.+.... -...-..|+|+|.. .-++.+-.-|+ ..++|....+....+.... ---.=.|+|+|.++....++.
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 345444332 23344567888844 45566655555 5678988887766655221 222446899999999988776
Q ss_pred eeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC------------------CCcEEEEeCCC
Q 021925 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE------------------DAIVRIWDTET 177 (305)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~ 177 (305)
....+.+.+++... ....+-.+..|.-....+.+.+||+.++.+.. .-.+.+.|..+
T Consensus 136 d~~rGViGvYd~r~-----~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 136 DPNRGVIGVYDARE-----GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred CCCCceEEEEeccc-----ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 66666666776652 23445556677777788999999998887642 11344555555
Q ss_pred CcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeCCCe-----EEEEEcCCceEEEEEee--------CCCeeEEEecCC
Q 021925 178 GKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVT--------ERPVNAVTMSPL 243 (305)
Q Consensus 178 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~ 243 (305)
++.+.+.... .-+.-.+..++..+||..++.+-..|. -.+=-...++++.-+.. ...|-+++.+.+
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 6555443321 124456888888888876665544331 11222234555544432 234678888888
Q ss_pred CCcEEEeeCCcEEEEEE
Q 021925 244 LDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 244 ~~~l~~~~~~~~~~~~~ 260 (305)
..+++..+..++..+.|
T Consensus 291 ~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 291 DGLVALTSPRGNRAVIW 307 (366)
T ss_pred CCeEEEecCCCCeEEEE
Confidence 88888888888774443
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.15 Score=40.68 Aligned_cols=169 Identities=16% Similarity=0.112 Sum_probs=95.6
Q ss_pred ceEEEEcCCCeeeEEec----C-CCcceEEEEEcCCCcEEEEEeC------C---CcEEEEecC-CCCeeEEEee-CCCc
Q 021925 33 TPTVWFADNGERLGTYR----G-HNGAVWCCDVSRDSMTLITGSA------D---QTAKLWNVE-TGAQLFTFNF-DSPA 96 (305)
Q Consensus 33 ~v~iw~~~~~~~~~~~~----~-~~~~v~~i~~~~~~~~l~s~~~------d---g~v~vwd~~-~~~~~~~~~~-~~~v 96 (305)
-+.+++.+++..+..+. + -....+.+...|+|.+-++... + ..=.+|-+. .+..+..... -...
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 45666766555432222 1 1235577888999876554333 0 111344444 4444444443 4566
Q ss_pred eEEEEecCCceEEEeCCcceeeeeeEEEEEeecc-cCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC-cEEEEe
Q 021925 97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD-PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-IVRIWD 174 (305)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd 174 (305)
+.++|+|+++.++.+.... ..+........ ................+..-.++...+|.+.+++..+| .|.+|+
T Consensus 166 NGla~SpDg~tly~aDT~~----~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPA----NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred CceEECCCCCEEEEEeCCC----CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 7899999998888776421 12222222210 11111122333334567777788888888776555554 999999
Q ss_pred CCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEE
Q 021925 175 TETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG 209 (305)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 209 (305)
.. ++.+..+.. ....+++++|-- +.+.|+..
T Consensus 242 pd-G~l~~~i~l---P~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 242 PD-GKLLGEIKL---PVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CC-CcEEEEEEC---CCCCCccceEeCCCcCEEEEE
Confidence 98 888888873 336777777753 44444433
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.90 E-value=0.13 Score=39.60 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 13 LTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ---..+....| +...-.=.++...+||..+.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEE
Confidence 45677877887878877766 78999999998776554222 12234444433 3334445688999999998888777
Q ss_pred EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (305)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 169 (305)
+..+..-.. ++ .+++.|+.......
T Consensus 126 ~~y~~EGWG-----------------------------------------------------Lt--~dg~~Li~SDGS~~ 150 (264)
T PF05096_consen 126 FPYPGEGWG-----------------------------------------------------LT--SDGKRLIMSDGSSR 150 (264)
T ss_dssp EE-SSS--E-----------------------------------------------------EE--ECSSCEEEE-SSSE
T ss_pred EecCCcceE-----------------------------------------------------EE--cCCCEEEEECCccc
Confidence 653332222 22 23555665555678
Q ss_pred EEEEeCCCCcEeeeeccccC--CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----e-----------
Q 021925 170 VRIWDTETGKLLKESDKETG--HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----T----------- 231 (305)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~----------- 231 (305)
++++|..+.+..+.+..... .-..++.+.+- +|...|=.=....|...|..+|+.+..+. .
T Consensus 151 L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~ 229 (264)
T PF05096_consen 151 LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPD 229 (264)
T ss_dssp EEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--T
T ss_pred eEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccccccccc
Confidence 88888887777666653211 12345666665 56666655567788889999999888764 0
Q ss_pred CCCeeEEEecCCCCcEEEe
Q 021925 232 ERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~ 250 (305)
..-.+.+|++|..+.+.+.
T Consensus 230 ~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp TS-EEEEEEETTTTEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEE
Confidence 1236899998887665554
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.83 E-value=0.16 Score=39.52 Aligned_cols=154 Identities=8% Similarity=0.096 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe-cCCCCee-E
Q 021925 12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN-VETGAQL-F 88 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd-~~~~~~~-~ 88 (305)
.+.+.+.+++|+.+|... .++.-.+|-...+....... ....+....|++++...+....+...+++. ..+++.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999999887765 23333444333333333332 223788889999987776666666677774 2333222 2
Q ss_pred EEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC---CCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 89 TFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD---QGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 89 ~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
... ....|..+.++|+|..++....... ...+.+..+.+.... ....+..........+..+.|.+++.+++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~--~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGG--GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCC--CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222 1228999999999998887652111 123333333333222 11122333334456889999999998777
Q ss_pred EeeCCC
Q 021925 163 SAGEDA 168 (305)
Q Consensus 163 ~~~~dg 168 (305)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665533
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.78 E-value=0.0041 Score=45.87 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc-cceEEEEEcCCCCEEEEE--eCCCeEEEEEcC
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTG--SLDKSAKLWDAR 221 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 221 (305)
++.+..+++.||.|+.|++.-.+.+.... .|. .++.....+..+++++.+ |.|..++.|++.
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 34577889999999999998777665554 344 333333334444444444 455555555544
No 394
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.76 E-value=0.17 Score=38.98 Aligned_cols=158 Identities=12% Similarity=0.090 Sum_probs=84.9
Q ss_pred EecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEE
Q 021925 47 TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (305)
Q Consensus 47 ~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (305)
.+.+-...+.++.|.|+.+ ++++....+.|...+. +|+.+..+...+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g------------------------------- 63 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG------------------------------- 63 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-------------------------------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-------------------------------
Confidence 4555566799999999755 5566667788877776 466666554221
Q ss_pred EeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc------Eeeeec--cccCCccceEEE
Q 021925 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK------LLKESD--KETGHKKTITSL 197 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~--~~~~~~~~v~~~ 197 (305)
.+....+++..++.++++.-.++.+.++++.... ....+. ....++..+-.+
T Consensus 64 --------------------~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGl 123 (248)
T PF06977_consen 64 --------------------FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGL 123 (248)
T ss_dssp ---------------------SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEE
T ss_pred --------------------CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEE
Confidence 1234456666666555555457888888773211 111221 112356678999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCC---ceEEEEEe---------eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 198 AKAADGSHFLTGSLDKSAKLWDART---LELIKTYV---------TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+|+|.++.|+.+-+..-..++.++. ...+.... .-..+.+++++|....+.+=+..+.+
T Consensus 124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 9999888888887776667776653 22222111 22357889999986665554544444
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.70 E-value=0.077 Score=46.28 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=69.8
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc--CCCCEEEEEeCCCeEEEEEcC----
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA--ADGSHFLTGSLDKSAKLWDAR---- 221 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~---- 221 (305)
.+.-+.-+.-++..++-+....+.|||.+.+.....-. ......|..+.|. |+|+.+++.|..+.|.++--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~--f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES--FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee--ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 34445555545544444445689999998876433221 1357889999886 588999999999999998532
Q ss_pred -----CceEEEEEe----eCCCeeEEEecCCCCcEEEeeCC
Q 021925 222 -----TLELIKTYV----TERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 222 -----~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
+..+++.+. ...+|.+..|.++|..++.++..
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq 149 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ 149 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE
Confidence 224555554 34689999999999766555433
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.60 E-value=0.14 Score=44.69 Aligned_cols=118 Identities=12% Similarity=0.231 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee--CCCceEEEEec--CCc-eEEEeCCcceeeeeeEEEEEee
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAV--GDK-LAVITTDPFMELNSAIHVKRIA 128 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 128 (305)
...-+.-+.-++.-++-+...++.|||.+.+........ ...|.++.|.. ++. +++++-...+.+....+..-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 344444444444444444456799999998876655554 88899998875 444 4444444333333332211111
Q ss_pred cccCCCCCceEEE--EeccC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925 129 RDPADQGGESVLI--LKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTE 176 (305)
Q Consensus 129 ~~~~~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 176 (305)
.. ....++.. +..++ .+|.+..|.++|..++.++ ..+.|+|-.
T Consensus 111 ~~---p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 111 KG---PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CC---cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11 11122222 23333 6789999999997666554 678888754
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.58 E-value=0.27 Score=39.06 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=79.1
Q ss_pred cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeee---eEEE
Q 021925 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHV 124 (305)
Q Consensus 49 ~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 124 (305)
..-.+.+..+.-++||+++++++.-..+.-||--.. =..........+..|.|.|++.+.+++..+.+.... ....
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET 220 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence 445577889999999998888776555567775322 233333467889999999999888877665554443 2222
Q ss_pred EEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC
Q 021925 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204 (305)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (305)
|..... ......-.+..++|.+++...++|+. |.+ +.....++.=+..+....-...+..+.|.++.+
T Consensus 221 w~~~~~----------~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 221 WSEPII----------PIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp E---B-----------TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred cccccC----------CcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 221110 01112234788999998877776654 433 445555554444332223455678888876655
Q ss_pred EEEEEeCCCeEEEE
Q 021925 205 HFLTGSLDKSAKLW 218 (305)
Q Consensus 205 ~l~~~~~dg~i~iw 218 (305)
-++. +.+|.+--|
T Consensus 289 gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 289 GFVL-GQDGVLLRY 301 (302)
T ss_dssp EEEE--STTEEEEE
T ss_pred eEEE-CCCcEEEEe
Confidence 4554 458876544
No 398
>PHA03098 kelch-like protein; Provisional
Probab=96.54 E-value=0.48 Score=41.45 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCCEEEEeeCC--------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCc
Q 021925 157 LNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTL 223 (305)
Q Consensus 157 ~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 223 (305)
+++..+.|+.+ ..+.+||..+++-...-... ........+.+ +++.++.|+.+ +.+.+||..+.
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 45556666542 23889998876543221110 11111122222 66777777754 46778887765
Q ss_pred e
Q 021925 224 E 224 (305)
Q Consensus 224 ~ 224 (305)
+
T Consensus 514 ~ 514 (534)
T PHA03098 514 T 514 (534)
T ss_pred E
Confidence 4
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.49 E-value=0.35 Score=39.31 Aligned_cols=238 Identities=14% Similarity=0.035 Sum_probs=116.8
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee---eEEe----cCCCcceEEEEEcCC----CcEEEEEeCC-------
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTY----RGHNGAVWCCDVSRD----SMTLITGSAD------- 73 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~---~~~~----~~~~~~v~~i~~~~~----~~~l~s~~~d------- 73 (305)
..++|+|.|||+.+++ ...|.|++++ .++.. +..+ .........++++|+ +...++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999987775 5699999998 44443 2233 134567899999994 3333333321
Q ss_pred -CcEEEEecCCC-------CeeEEE-ee----CCCceEEEEecCCceEEEeCCccee------eeeeEEEEEeecccCCC
Q 021925 74 -QTAKLWNVETG-------AQLFTF-NF----DSPARSVDFAVGDKLAVITTDPFME------LNSAIHVKRIARDPADQ 134 (305)
Q Consensus 74 -g~v~vwd~~~~-------~~~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 134 (305)
..|.-|....+ +.+... .. ......+.|.|++.+.+...+.... ......+..+.......
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444544433 111111 11 2345679999999777776654320 00112223332211100
Q ss_pred ---C-----CceEEEEeccCCCeeEEEEcCC-CCEEEEe-eCCCcEEEEeCCCCcE------------------------
Q 021925 135 ---G-----GESVLILKGPQGRINRAVWGPL-NRTIISA-GEDAIVRIWDTETGKL------------------------ 180 (305)
Q Consensus 135 ---~-----~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~------------------------ 180 (305)
. ......+..--.....++|+|. +++.++= +.++.=.|--+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0 0011112212223457899998 5544321 2232222222222211
Q ss_pred -----eeeeccccCCccceEEEEEcC-------CCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eCCCeeEEEecCC
Q 021925 181 -----LKESDKETGHKKTITSLAKAA-------DGSHFLTGSLDKSAKLWDARTLELIKTYV-----TERPVNAVTMSPL 243 (305)
Q Consensus 181 -----~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~ 243 (305)
...+ .+...+..+.|.. .|.++++.-..+.|...++.....+.... ...++..+++.||
T Consensus 241 ~~~~P~~~~----~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 241 GFVPPVFAY----PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp TS---SEEE----TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CcCccceee----cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 0111 2335566777664 34455555556788888887553332222 3346899999999
Q ss_pred CCcEEEeeCCcE
Q 021925 244 LDHVCIGEPQTI 255 (305)
Q Consensus 244 ~~~l~~~~~~~~ 255 (305)
|.+.++...++.
T Consensus 317 G~Lyv~~d~~G~ 328 (331)
T PF07995_consen 317 GALYVSDDSDGK 328 (331)
T ss_dssp SEEEEEE-TTTT
T ss_pred CeEEEEECCCCe
Confidence 988887765554
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.021 Score=42.30 Aligned_cols=102 Identities=8% Similarity=0.096 Sum_probs=62.5
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE-EEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eC-CC
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE-RP 234 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~-~~ 234 (305)
+..++.|+.+|.|++|............. .....+- .+.--.++.+..+++.||.|+.|++.-++.+.... |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 45689999999999998873221111110 1122222 22333355678899999999999999887776655 44 45
Q ss_pred eeEEEecCCCCcEEEe--eCCcEEEEEEeehhhh
Q 021925 235 VNAVTMSPLLDHVCIG--EPQTIKFMLLVYLFVL 266 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 266 (305)
+.....+..++.++.+ +.+.. ++.|+.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~-----~k~W~v 176 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRV-----LKKWNV 176 (238)
T ss_pred cceeEEecCCceEEeeccccchh-----hhhcch
Confidence 5555555556666655 44433 455554
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.47 E-value=0.66 Score=42.18 Aligned_cols=191 Identities=18% Similarity=0.123 Sum_probs=97.3
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceE-------------EEEEcC--CCcEEEEEeC----------CCcE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-------------CCDVSR--DSMTLITGSA----------DQTA 76 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~s~~~----------dg~v 76 (305)
+..++.++.|+.+.-.|.++|+.+..+.. ++.|. .+.-.| .+..+++++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44788888999999999999998877642 22221 111122 1335666643 6889
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
+-+|.++|+.+..+....+...-.. +.+.....++. ..|..... +.+...+..-.+...+ .+..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~-~~g~~~~~gg~---------n~W~~~s~--D~~~glvy~ptGn~~p----d~~g 402 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPP-APGETYTRNTP---------NSWSVASY--DEKLGLVYLPMGNQTP----DQWG 402 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCC-CCCCEeccCCC---------CccCceEE--cCCCCeEEEeCCCccc----cccC
Confidence 9999999999998874322111000 11111111110 00000000 0000011110111000 0000
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc-------cceEEEEEcC-CCC---EEEEEeCCCeEEEEEcCCceE
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-------KTITSLAKAA-DGS---HFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~ 225 (305)
..+.....-..+.|.-.|.++++....++.. .|. ....-+.+.. +|+ .++.++.+|.+++.|.++|++
T Consensus 403 ~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~-~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 403 GDRTPADEKYSSSLVALDATTGKERWVFQTV-HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred CccccCcccccceEEEEeCCCCceEEEeccc-CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 0000000112456777888888887777632 121 1122222322 553 789999999999999999998
Q ss_pred EEEEe
Q 021925 226 IKTYV 230 (305)
Q Consensus 226 ~~~~~ 230 (305)
+...+
T Consensus 482 l~~~~ 486 (764)
T TIGR03074 482 IVPVE 486 (764)
T ss_pred Eeece
Confidence 87654
No 402
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.46 E-value=0.28 Score=37.80 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=80.3
Q ss_pred eeeEEec-CCCcceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeee
Q 021925 43 ERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 119 (305)
Q Consensus 43 ~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 119 (305)
+.+.++. ....-...+.|..++.++-+.+.-| .|+.+|+.+++.......+.....
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg--------------------- 92 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG--------------------- 92 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E---------------------
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc---------------------
Confidence 3444554 1234567889977888888888766 699999999988776654432210
Q ss_pred eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE
Q 021925 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (305)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 199 (305)
+- +.-+.+.+..+. -.++...+||..+-+.+.++. ....=..++
T Consensus 93 -----------------EG---it~~~d~l~qLT-----------Wk~~~~f~yd~~tl~~~~~~~----y~~EGWGLt- 136 (264)
T PF05096_consen 93 -----------------EG---ITILGDKLYQLT-----------WKEGTGFVYDPNTLKKIGTFP----YPGEGWGLT- 136 (264)
T ss_dssp -----------------EE---EEEETTEEEEEE-----------SSSSEEEEEETTTTEEEEEEE-----SSS--EEE-
T ss_pred -----------------ee---EEEECCEEEEEE-----------ecCCeEEEEccccceEEEEEe----cCCcceEEE-
Confidence 00 011122233333 356889999999999888886 334555666
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.|++.|+.+....+++++|..+.+....+.
T Consensus 137 -~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 137 -SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp -ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred -cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 456677777777889999998877666655
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.45 E-value=0.33 Score=38.58 Aligned_cols=225 Identities=12% Similarity=0.112 Sum_probs=105.5
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-eeeEE--ecCC---CcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGT--YRGH---NGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-~~~~~--~~~~---~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
-..++.+|.|..+..-+++|. .+. |+...++ +.=.. .... .-...+|.|..+ ..+++ +..+ +.+-..+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC
Confidence 456899999986555555554 554 3434333 21111 1111 224677888643 34444 4444 4444445
Q ss_pred CCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 83 TGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 83 ~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.++.=..+. .+.....+....++...+++..+.+ +... .....-........+.+..+..+++|
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~i--------y~T~----DgG~tW~~~~~~~~gs~~~~~r~~dG 156 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAI--------YRTT----DGGKTWQAVVSETSGSINDITRSSDG 156 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--E--------EEES----STTSSEEEEE-S----EEEEEE-TTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcE--------EEeC----CCCCCeeEcccCCcceeEeEEECCCC
Confidence 555444433 2233344444444444444332111 1111 01112223344555778889999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE-cCCceEEEE----Ee-eC
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTLELIKT----YV-TE 232 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~----~~-~~ 232 (305)
++++++.......-||--...-...-. .....|.+|.|.|++.+.+.+ ..|.|++=+ ....+.-.. .. ..
T Consensus 157 ~~vavs~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 157 RYVAVSSRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp -EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred cEEEEECcccEEEEecCCCccceEEcc---CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence 988888665555677754321111111 246789999999998765544 889898887 222322222 11 23
Q ss_pred CCeeEEEecCCCCcEEEeeCCcE
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
-.+.+++|.+++...++|++...
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT-E
T ss_pred eeeEEEEecCCCCEEEEeCCccE
Confidence 34789999999888777765543
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.39 E-value=0.26 Score=43.20 Aligned_cols=63 Identities=8% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCEEEEeeCC------CcEEEEeCCC-CcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCce
Q 021925 157 LNRTIISAGED------AIVRIWDTET-GKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLE 224 (305)
Q Consensus 157 ~~~~l~~~~~d------g~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~ 224 (305)
+++..+.|+.+ ..+..||..+ .+- +..+. ........+.+ +++..++|+.|| .+..||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~---~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE---SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC---cccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 35556666643 2467899886 333 33332 22222222333 678889999888 56666666543
No 405
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.34 E-value=0.65 Score=41.33 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=57.8
Q ss_pred CCeeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 147 GRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
+.-..++|-|+|..+++-..|| .|.++..+ |-.-..+....+....+...+|+-....++.+ ..+.+++|-..
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 3344589999999999877555 35555532 22112221111344556667777655544443 46679999877
Q ss_pred CceEEEEEe-eCCCeeEEEecCCCCc
Q 021925 222 TLELIKTYV-TERPVNAVTMSPLLDH 246 (305)
Q Consensus 222 ~~~~~~~~~-~~~~v~~~~~~~~~~~ 246 (305)
+..-.-... .-..+.-+.|+|....
T Consensus 325 NyhWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 325 NYHWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred ceEEEEEEeecCCCcceeeeccccCc
Confidence 654433222 3345677899997543
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.33 E-value=0.32 Score=41.64 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=78.4
Q ss_pred cCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCC-----CcEeeeeccc--cCCccceEEEEEcCCCCEEEEEeCCC
Q 021925 145 PQGRINRAVWGPLN----RTIISAGEDAIVRIWDTET-----GKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDK 213 (305)
Q Consensus 145 ~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg 213 (305)
.-..|..+.|.|-+ ..+++.-....|.+|.+.. ++.+..-... ....--...+.|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 34457889999863 3455666678899998862 2222111100 01111234578999988888776655
Q ss_pred eEEEEEcCC--ceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 214 SAKLWDART--LELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 214 ~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
.--+.+++. .+....+...+.|.|.+|.+||+.|++|-+.... .++|+-....+.
T Consensus 135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLH----SyiWd~~qKtL~ 191 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLH----SYIWDSAQKTLH 191 (671)
T ss_pred eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEE----EEEecCchhhhh
Confidence 545556553 2333445578889999999999999998777665 566665544443
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.29 E-value=0.26 Score=44.22 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=56.2
Q ss_pred cceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecc
Q 021925 53 GAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 130 (305)
Q Consensus 53 ~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (305)
-.|..|.++|+|++++..|..| |.|-.+... .....+. .+..+.|-.+.-+..++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence 3688899999999998888855 666555321 1111111 11222222221111111
Q ss_pred cCCCCCceEEEEeccCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCC
Q 021925 131 PADQGGESVLILKGPQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETG 178 (305)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 178 (305)
...+...|..+.|+|.+ ..|+.-..|+.+++||+...
T Consensus 142 -----------~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 -----------TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -----------cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 12334568889999974 78999999999999999754
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.20 E-value=0.57 Score=38.75 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=39.1
Q ss_pred cceEEEEEcCCCCEEEEee-----------CCC-ceEEEEcCC--Ce--eeEEecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925 11 RPLTYLKYNKDGDLLFSCA-----------KDH-TPTVWFADN--GE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~-----------~dg-~v~iw~~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 74 (305)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+-..-.....+++.+++ .++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567899999999877643 223 677775432 32 223343333456889999888 444 44433
Q ss_pred cEEEE
Q 021925 75 TAKLW 79 (305)
Q Consensus 75 ~v~vw 79 (305)
|..+
T Consensus 92 -i~~~ 95 (367)
T TIGR02604 92 -ILFL 95 (367)
T ss_pred -EEEE
Confidence 4433
No 409
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.12 E-value=0.44 Score=41.85 Aligned_cols=193 Identities=14% Similarity=0.097 Sum_probs=90.6
Q ss_pred CCCEEEEeeCC-C-----ceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCc-----EEEEecCCCCeeE
Q 021925 21 DGDLLFSCAKD-H-----TPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQT-----AKLWNVETGAQLF 88 (305)
Q Consensus 21 ~~~~l~s~~~d-g-----~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~-----v~vwd~~~~~~~~ 88 (305)
++...++||.| | ++..||..+++-.. +..-..+-....... +|...++||.||. +-.||.++.+-..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 35677888888 3 57778877766433 211111111111111 6778889998865 6667766554322
Q ss_pred EEeeCCCceEEEEec-CCceEEEeCCccee-eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 89 TFNFDSPARSVDFAV-GDKLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 89 ~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
.-............. ++.+.++++..... ....+..++.....- ..+..+........ + ..-++...+.|+.
T Consensus 411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g-~-a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFG-V-AVLNGKIYVVGGF 484 (571)
T ss_pred cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccce-E-EEECCEEEEECCc
Confidence 222222333333333 44444444432222 223333333221110 01111111111111 1 2224667777777
Q ss_pred CC-----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-----EEEEEcCCc
Q 021925 167 DA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTL 223 (305)
Q Consensus 167 dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~ 223 (305)
|+ +|..||..+.+....-. .......+..... ++...++|+.||. |..||..+.
T Consensus 485 ~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 485 DGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cCCCccceEEEEcCCCCceeEccc-CccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 66 37778888765443321 1112222222222 5667788887764 666665544
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.08 E-value=1 Score=40.60 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=54.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcC---------CCee---eEEe--------cCCCcceEEEEEcCC---CcE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGER---LGTY--------RGHNGAVWCCDVSRD---SMT 66 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---------~~~~---~~~~--------~~~~~~v~~i~~~~~---~~~ 66 (305)
.-.|..+..+|+|++||..|..|...+.=.. .|+. .+++ ..+...|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3468999999999999999887655443211 1111 1111 134568999999995 578
Q ss_pred EEEEeCCCcEEEEecCCCC
Q 021925 67 LITGSADQTAKLWNVETGA 85 (305)
Q Consensus 67 l~s~~~dg~v~vwd~~~~~ 85 (305)
|+.-..|+++++||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999997544
No 411
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.04 E-value=0.23 Score=33.70 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=62.6
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCc--------EeeeeccccCCccceEEEEEcC-----CCCEEEEEeCCCeEEEE
Q 021925 152 AVWGPLNRTIISAGEDAIVRIWDTETGK--------LLKESDKETGHKKTITSLAKAA-----DGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw 218 (305)
-.|.....-|++++.-|+|.|++..... .++.+. -...|++++-.+ +...|+.|+ ...+..|
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 3455555678888889999999876432 333332 456777776433 234566665 5579999
Q ss_pred EcCCceEEEEEeeCCCeeEEEecC----CCCcEEEeeC
Q 021925 219 DARTLELIKTYVTERPVNAVTMSP----LLDHVCIGEP 252 (305)
Q Consensus 219 d~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~ 252 (305)
|+....-+..-..+..|+++.+-. +.+++++|+.
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn 116 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN 116 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce
Confidence 999877665555667788887632 3455666653
No 412
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.94 E-value=0.2 Score=41.61 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=62.7
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEE-EEEcCC-----------------CcEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRD-----------------SMTL 67 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~-i~~~~~-----------------~~~l 67 (305)
|......+.++..+|++++.|+...=|.|.++|+.++..++..++..+.-.. +....+ ..+|
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 5566778999999999998888877799999999999888887765543111 111111 1122
Q ss_pred -EEEeCCCcEEEEecCCCCeeEEEee
Q 021925 68 -ITGSADQTAKLWNVETGAQLFTFNF 92 (305)
Q Consensus 68 -~s~~~dg~v~vwd~~~~~~~~~~~~ 92 (305)
+-+-.-|.|-||.++++..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 3455679999999999998887763
No 413
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.63 Score=36.31 Aligned_cols=155 Identities=10% Similarity=0.138 Sum_probs=90.0
Q ss_pred cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEE
Q 021925 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (305)
Q Consensus 49 ~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (305)
.+-...+.++.|+|+.+.|.+......-.|+=-.+|+.+.++.... ....+.+..++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f------------------- 142 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF------------------- 142 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-------------------
Confidence 3444569999999999999888887877788777888888776332 2222333333332
Q ss_pred eecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE-------eeeeccccCCccceEEEEE
Q 021925 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTITSLAK 199 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~ 199 (305)
.++--.+..+.++.+..... .-.+......+...-.++|
T Consensus 143 ----------------------------------vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~ 188 (316)
T COG3204 143 ----------------------------------VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAW 188 (316)
T ss_pred ----------------------------------EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeec
Confidence 22222333333333322211 1111111123667888999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----------eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-----------TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+|..+.|..+-+..=+.|+............ .-..|.++.|++....+.+=|.++.+
T Consensus 189 d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~ 256 (316)
T COG3204 189 DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR 256 (316)
T ss_pred CCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce
Confidence 9998888888887777777665332111110 12246788898776666555555444
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.53 Score=39.75 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (305)
.|..+..++.|..++-+|.+|.+.+.=.+.-..-..+..+.+ |.|-.+.-+..++..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts---------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS---------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc----------------------
Confidence 566777888998888888888655543222222222322222 222222222222111
Q ss_pred CCCCceEEEEeccCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCcEee
Q 021925 133 DQGGESVLILKGPQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLK 182 (305)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~ 182 (305)
...-.+..++|+|+. ..|..-+.|..+++||+...+.+.
T Consensus 163 -----------s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 163 -----------STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred -----------CCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 112235668899976 678888899999999998765543
No 415
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.47 Score=35.01 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=49.0
Q ss_pred CCCEEEEeeCC--CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEeeCCCce
Q 021925 21 DGDLLFSCAKD--HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPAR 97 (305)
Q Consensus 21 ~~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~v~ 97 (305)
+|.++.+.+.- ..|++||+.+++.+....-....+..=-...-+..+. -.-.+|.-..+|.++.+++..++.++.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45566665543 4799999999987765442222222111111122332 23457888899999988888887776666
Q ss_pred EEEEe
Q 021925 98 SVDFA 102 (305)
Q Consensus 98 ~~~~~ 102 (305)
.++..
T Consensus 135 gLt~d 139 (262)
T COG3823 135 GLTSD 139 (262)
T ss_pred eeecC
Confidence 65543
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.81 E-value=0.071 Score=28.09 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=25.9
Q ss_pred cceEEEEEcCCC---CEEEEEeCCCeEEEEEcCC
Q 021925 192 KTITSLAKAADG---SHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 192 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 222 (305)
+.+.++.|+|+. .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 4888888889999999995
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.74 E-value=0.14 Score=38.80 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=52.5
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec----ccc-------CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESD----KET-------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+..++.++++.+.+|.+++||+.+++.+..-. ... .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 44568889999999999999999887654321 011 3556788999998888777665 68899998765
Q ss_pred ceEE
Q 021925 223 LELI 226 (305)
Q Consensus 223 ~~~~ 226 (305)
+.-+
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 4433
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.2 Score=46.03 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=70.1
Q ss_pred CCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 147 ~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
....++.|.|.- ...+....|+.|++.-+..... +..+ ......++++|+|.|+.++.|-..|++.-|... ++
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-le 230 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LE 230 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc----CcccceeeEEeccccceeeEecCCCeEEEeecc-cc
Confidence 345677888865 3455667789898887754322 2222 356788999999999999999999999988754 44
Q ss_pred EEEEEe-----eCCCeeEEEecCCCCcEEEe
Q 021925 225 LIKTYV-----TERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 225 ~~~~~~-----~~~~v~~~~~~~~~~~l~~~ 250 (305)
....+. ....|.+++|-....++++-
T Consensus 231 ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 231 IKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 333332 23578999998888777763
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.72 E-value=0.07 Score=28.12 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCC
Q 021925 147 GRINRAVWGPLN---RTIISAGEDAIVRIWDTET 177 (305)
Q Consensus 147 ~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 177 (305)
+.+.++.|+|.. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999854 4777777789999999995
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.32 Score=44.89 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=95.4
Q ss_pred EEEcCCCCEEEEeeCCCceEEEEcCC-------Ce---------eeEEecCC-CcceEEEEEcCCCcEEEEE--eCCCcE
Q 021925 16 LKYNKDGDLLFSCAKDHTPTVWFADN-------GE---------RLGTYRGH-NGAVWCCDVSRDSMTLITG--SADQTA 76 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~dg~v~iw~~~~-------~~---------~~~~~~~~-~~~v~~i~~~~~~~~l~s~--~~dg~v 76 (305)
++.++.-..+++++..+.+.++-..+ +. ....+.-| .-++..+...+|+...++. +.+-.|
T Consensus 47 la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v 126 (1405)
T KOG3630|consen 47 LAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAV 126 (1405)
T ss_pred hhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceE
Confidence 44455445566666666666663321 10 11222222 2355666667776654433 334478
Q ss_pred EEEecCCCCeeE--------E----EeeCCCceEEEEecCCce--EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 77 KLWNVETGAQLF--------T----FNFDSPARSVDFAVGDKL--AVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 77 ~vwd~~~~~~~~--------~----~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
..+|+++-..-. . +.......++.|.|.-.. ++...+ ..+.+..+... ...+..
T Consensus 127 ~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d------lsl~V~~~~~~-----~~~v~s- 194 (1405)
T KOG3630|consen 127 YSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD------LSLRVKSTKQL-----AQNVTS- 194 (1405)
T ss_pred EEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccc------cchhhhhhhhh-----hhhhcc-
Confidence 899987543211 1 112334456666663222 222221 11111111100 011111
Q ss_pred eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC-ccceEEEEEcCCCCEEEE
Q 021925 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLT 208 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~ 208 (305)
-.-....++++|+|.|+.++.|-..|++.-|-.. .+....+...... ...|.+++|-....++++
T Consensus 195 ~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 195 FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 1234567899999999999999999999888754 4434444332222 478999999877666664
No 421
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.54 E-value=0.14 Score=26.85 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=30.1
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCceEEEEEeeCCCeeEEEec
Q 021925 201 ADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (305)
Q Consensus 201 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 241 (305)
|+++.|+++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 5677666555 5889999999999998888765555565553
No 422
>PHA02713 hypothetical protein; Provisional
Probab=95.38 E-value=1.8 Score=38.17 Aligned_cols=83 Identities=8% Similarity=-0.058 Sum_probs=40.1
Q ss_pred cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC------CeEEEEEcCC-ce--EEEEEeeCCCeeEEE
Q 021925 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDART-LE--LIKTYVTERPVNAVT 239 (305)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~~~~v~~~~ 239 (305)
.+..||..+.+-...-... ...... +++ .-+++..+.|+.+ ..+..||..+ .+ .+..+........++
T Consensus 433 ~ve~YDP~td~W~~v~~m~-~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFW-TGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred eEEEECCCCCeEeecCCCC-cccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 4778888765432211110 111111 122 2256677777754 2467898886 33 223332221112222
Q ss_pred ecCCCCcEEEeeCCcE
Q 021925 240 MSPLLDHVCIGEPQTI 255 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~ 255 (305)
.-+++..++|+.++.
T Consensus 510 -~~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 510 -LHDNTIMMLHCYESY 524 (557)
T ss_pred -EECCEEEEEeeecce
Confidence 226677788877763
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=95.18 E-value=1.4 Score=35.89 Aligned_cols=151 Identities=5% Similarity=-0.002 Sum_probs=79.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEE-EEcCCCeeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTV-WFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~i-w~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
...+.++.+.|++.+++++ ..|.+.. ++ ..++.-... ..-...+.++.+.++++.++++ ..|.+.+=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4568889999988766655 4565543 22 222222222 2344678999999988776654 5576643233344332
Q ss_pred EEEee-----CCCceEEEEecCCceEEEeCCcceeeeee-EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 88 FTFNF-----DSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 88 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
..... ...+..+.+.+++...+++..+....... ...|.... ....-....+.+.+..+++.+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDP-----------VGEEVPSNFYKIVFLDPEKGF 317 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECC-----------cCCCCCcceEEEEEeCCCceE
Confidence 22221 13466788888877776665432222111 11111110 001112346667777666655
Q ss_pred EEeeCCCcEEEEeC
Q 021925 162 ISAGEDAIVRIWDT 175 (305)
Q Consensus 162 ~~~~~dg~i~iwd~ 175 (305)
+ .+..|.|..++-
T Consensus 318 ~-~G~~G~il~~~~ 330 (334)
T PRK13684 318 V-LGQRGVLLRYVG 330 (334)
T ss_pred E-ECCCceEEEecC
Confidence 5 445688777653
No 424
>PHA03098 kelch-like protein; Provisional
Probab=95.16 E-value=1.4 Score=38.59 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCCEEEEeeCC------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC--------CeEEEEEcCC
Q 021925 157 LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--------KSAKLWDART 222 (305)
Q Consensus 157 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~ 222 (305)
+++..+.|+.+ ..+..||..+.+-...-....+. ... +++ ..++..++.|+.+ ..+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 45666666632 35889998875433221111111 111 122 2356666777643 2388889876
Q ss_pred ceE
Q 021925 223 LEL 225 (305)
Q Consensus 223 ~~~ 225 (305)
.+-
T Consensus 466 ~~W 468 (534)
T PHA03098 466 NKW 468 (534)
T ss_pred Cce
Confidence 643
No 425
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.14 E-value=0.17 Score=26.44 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCCcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEE
Q 021925 62 RDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (305)
Q Consensus 62 ~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~ 101 (305)
|++++|+++. .+++|.++|..+++.+..+........+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5677666554 588999999999988888876655555554
No 426
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.08 E-value=2.6 Score=38.48 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc--------eEEEEEcC----------------CCcEEEEEeCCCcEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA--------VWCCDVSR----------------DSMTLITGSADQTAK 77 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--------v~~i~~~~----------------~~~~l~s~~~dg~v~ 77 (305)
+..|+.++.++.|.-.|..+|+.+-++...... ...+.+.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777888899999999999988877532210 11222211 234788888899999
Q ss_pred EEecCCCCeeEEEeeCC
Q 021925 78 LWNVETGAQLFTFNFDS 94 (305)
Q Consensus 78 vwd~~~~~~~~~~~~~~ 94 (305)
-.|.++|+.+..+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G 290 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG 290 (764)
T ss_pred EEECCCCCEEEEecCCC
Confidence 99999999887765433
No 427
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.07 E-value=0.29 Score=37.04 Aligned_cols=65 Identities=12% Similarity=0.265 Sum_probs=48.1
Q ss_pred EcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-------c-------CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------R-------GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 18 ~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-------~-------~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.+..+|.-+++-+ +|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999987754321 1 2446788888888887666654 47888888653
No 428
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.99 E-value=0.014 Score=51.69 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=94.1
Q ss_pred ecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcC--CCeeeEE-----ecCCCcceEEEEEcC---CCcEEEEEeCCC
Q 021925 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFAD--NGERLGT-----YRGHNGAVWCCDVSR---DSMTLITGSADQ 74 (305)
Q Consensus 6 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~--~~~~~~~-----~~~~~~~v~~i~~~~---~~~~l~s~~~dg 74 (305)
++|..+.|-.+.|.. +-..++ -.-|.+.+|++. .|+.... .......+.-+.|.| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 567778888888843 222222 234688899875 3443222 222334456666665 556666677788
Q ss_pred cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
.+++..+.+...-....|...+..+++...|-..+ -..
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l------------------------------------------~~l 243 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKL------------------------------------------ASL 243 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhh------------------------------------------eee
Confidence 88887765443211111444444444332221111 116
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC-C----cEeeeeccccCCcc-ceEEEEEcCCC---------CEEEEEeC-CCeEEEE
Q 021925 155 GPLNRTIISAGEDAIVRIWDTET-G----KLLKESDKETGHKK-TITSLAKAADG---------SHFLTGSL-DKSAKLW 218 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~-~----~~~~~~~~~~~~~~-~v~~~~~~~~~---------~~l~~~~~-dg~i~iw 218 (305)
||||+.+++++.||.++.|.+.- + .++...+ .|.+ +-.|.-++.+. .++++++. +..+++|
T Consensus 244 SpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk---phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w 320 (1283)
T KOG1916|consen 244 SPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK---PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFW 320 (1283)
T ss_pred CCCCcEEEEeecCCccceeeeeeeccccHhhhhccC---CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEe
Confidence 89999999999999998887642 2 2333333 3442 22222233221 12344443 4558888
Q ss_pred EcCCceEE
Q 021925 219 DARTLELI 226 (305)
Q Consensus 219 d~~~~~~~ 226 (305)
.....+|+
T Consensus 321 ~~a~w~Cl 328 (1283)
T KOG1916|consen 321 AEAPWQCL 328 (1283)
T ss_pred eccchhhh
Confidence 87776665
No 429
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.98 E-value=0.61 Score=35.77 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=76.2
Q ss_pred eEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-C--CcEEEEecCCC--CeeE-----EEeeCCCceEEEEec
Q 021925 34 PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-D--QTAKLWNVETG--AQLF-----TFNFDSPARSVDFAV 103 (305)
Q Consensus 34 v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d--g~v~vwd~~~~--~~~~-----~~~~~~~v~~~~~~~ 103 (305)
-.+||+.+++....--..+--..+-.+.+||+.|.+|+. + ..+++++..+. .+.. .+..+..-.+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888877653322222223334457789999998876 2 45788876441 1111 122333334556667
Q ss_pred CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-----ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 021925 104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-----GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178 (305)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 178 (305)
+|+.+++++...... ..+.. ............+. ....--..+...|+|+.++.+..++ .|||..+.
T Consensus 128 DG~vlIvGG~~~~t~----E~~P~--~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTY----EFWPP--KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcc----cccCC--ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 899888887641110 00000 00000000010111 1112223566789999998888654 57798888
Q ss_pred cEeeeecc
Q 021925 179 KLLKESDK 186 (305)
Q Consensus 179 ~~~~~~~~ 186 (305)
+.++.+..
T Consensus 200 ~v~~~lP~ 207 (243)
T PF07250_consen 200 TVVRTLPD 207 (243)
T ss_pred eEEeeCCC
Confidence 77777764
No 430
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.81 Score=43.04 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=88.1
Q ss_pred CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEec--------C-CceEEEeCCcceeeee
Q 021925 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV--------G-DKLAVITTDPFMELNS 120 (305)
Q Consensus 51 ~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~--------~-~~~~~~~~~~~~~~~~ 120 (305)
|...-..+-+-|.=.+.- .+-|+.+.+|+.+++.....+. ....|..+..-. . ...+++++...+.+
T Consensus 77 ~~~~~~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i-- 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAW-ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI-- 153 (1311)
T ss_pred CcceeeeeccchhhcceE-EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEE--
Confidence 333444555556432222 2457889999999977666665 455555554322 1 12333333221111
Q ss_pred eEEEEEeecccCCCC-C--ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC----C---Cc-E---------
Q 021925 121 AIHVKRIARDPADQG-G--ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE----T---GK-L--------- 180 (305)
Q Consensus 121 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~----~---~~-~--------- 180 (305)
..+........ . .....+......|.++....+|+.+++| .|| .+|.+. . ++ +
T Consensus 154 ----lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ 226 (1311)
T KOG1900|consen 154 ----LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSV 226 (1311)
T ss_pred ----EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhH
Confidence 11111110000 0 0112233345568888877788766655 556 444432 1 11 1
Q ss_pred ----eeeecccc-CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 181 ----LKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 181 ----~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+..+.... .+..+|..++.......+.+-++.|+|.+||+..
T Consensus 227 ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 227 LSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11111122 4567999999998888999999999999999875
No 431
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.81 E-value=1.9 Score=35.45 Aligned_cols=158 Identities=15% Similarity=0.024 Sum_probs=76.7
Q ss_pred EcCCCeeeEEecCCCcceEEE-----EEcCCCcEEEEEeC-CC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEE
Q 021925 38 FADNGERLGTYRGHNGAVWCC-----DVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (305)
Q Consensus 38 ~~~~~~~~~~~~~~~~~v~~i-----~~~~~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 109 (305)
|..+|..+.++......-..+ +|.+||+.|+.++. || .+.+.|+.+++..+....+.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--------------- 80 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--------------- 80 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC---------------
Confidence 667788887776544333333 56778876665554 44 46666888776554332110
Q ss_pred EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccC
Q 021925 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG 189 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 189 (305)
.......++|+.+.++-......|+-.|+++.+....+. .
T Consensus 81 -------------------------------------~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~---~ 120 (386)
T PF14583_consen 81 -------------------------------------DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE---V 120 (386)
T ss_dssp -------------------------------------B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----
T ss_pred -------------------------------------CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE---C
Confidence 111123445666666554445677777887766544443 1
Q ss_pred CccceEEEEE--cCCCCEEEEEe----------------------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925 190 HKKTITSLAK--AADGSHFLTGS----------------------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 190 ~~~~v~~~~~--~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 245 (305)
....+-...| +.|+..++-.- -...|.-.|+++|+....+.....+..+.|+|...
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 2333322333 33555443221 12347777888888877777888889999999876
Q ss_pred cEEEe
Q 021925 246 HVCIG 250 (305)
Q Consensus 246 ~l~~~ 250 (305)
.+++=
T Consensus 201 ~li~f 205 (386)
T PF14583_consen 201 TLIMF 205 (386)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 65553
No 432
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.75 E-value=0.27 Score=43.15 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCCCEEEEeeCCCcEEEEeCCC----CcEeeeecc-----------c--------cCCccceEEEEEcC----CCCEEEE
Q 021925 156 PLNRTIISAGEDAIVRIWDTET----GKLLKESDK-----------E--------TGHKKTITSLAKAA----DGSHFLT 208 (305)
Q Consensus 156 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~-----------~--------~~~~~~v~~~~~~~----~~~~l~~ 208 (305)
++...++.+..||.+....... +........ . ......+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999888887764 111111100 0 01123455666666 6788999
Q ss_pred EeCCCeEEEEEcCCceEEEEEe
Q 021925 209 GSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 209 ~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.74 E-value=1.9 Score=35.13 Aligned_cols=103 Identities=10% Similarity=0.087 Sum_probs=55.7
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE---eeeec-cccCCccceEEEEEcCC----CCEEEEEeCC-------
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKL---LKESD-KETGHKKTITSLAKAAD----GSHFLTGSLD------- 212 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~----~~~l~~~~~d------- 212 (305)
..+.|+|.|+++.+++ ...|.|++++ ..+.. +..+. ...........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999887665 5699999999 44443 22231 12234567899999994 4433433321
Q ss_pred -CeEEEEEcCCc-------eEEE-EEee----CCCeeEEEecCCCCcEEEeeC
Q 021925 213 -KSAKLWDARTL-------ELIK-TYVT----ERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 213 -g~i~iwd~~~~-------~~~~-~~~~----~~~v~~~~~~~~~~~l~~~~~ 252 (305)
..|.-|..... +.+. .... ...-..++|.|||.+.++.++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444332 1111 1111 233567999999965544433
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.66 E-value=1.3 Score=32.97 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=62.8
Q ss_pred CEEEEeeCCCcEEEEeCCC--CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC------eEEEE---EcC--Cce-
Q 021925 159 RTIISAGEDAIVRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------SAKLW---DAR--TLE- 224 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iw---d~~--~~~- 224 (305)
+.|+.+...+.|.+|++.. .+....+. .-+.|..+.++..|++|+|--.+. .+|+| +.. ..+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 4454446668899999983 34455554 458899999999999999864422 45665 211 111
Q ss_pred --------------------EEEEE--eeCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 225 --------------------LIKTY--VTERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 225 --------------------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
++..+ ....++.+++..|-..-|++|+++...++.
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence 12212 244567889999887778888888765444
No 435
>PRK10115 protease 2; Provisional
Probab=94.63 E-value=3.4 Score=37.50 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCCEEEEeeCC-----CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC------CcEEEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWN 80 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd 80 (305)
.+..+.++|||++|+.+... ..|++-|+.+++.+...-.... ..++|.+|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 47778999999988875332 3688889988864322211211 569999988766554432 3577778
Q ss_pred cCCC--CeeEEEeeCCC-ce-EEEEecCCceEEEeC
Q 021925 81 VETG--AQLFTFNFDSP-AR-SVDFAVGDKLAVITT 112 (305)
Q Consensus 81 ~~~~--~~~~~~~~~~~-v~-~~~~~~~~~~~~~~~ 112 (305)
+.++ +....+..... .. ....+.++..+++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence 8877 33333432222 22 223343666665443
No 436
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.51 E-value=0.41 Score=39.68 Aligned_cols=170 Identities=8% Similarity=-0.015 Sum_probs=91.8
Q ss_pred ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE-Eee--CC----Cce-EEEEecCCceEEEeCCcceeee
Q 021925 48 YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNF--DS----PAR-SVDFAVGDKLAVITTDPFMELN 119 (305)
Q Consensus 48 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~--~~----~v~-~~~~~~~~~~~~~~~~~~~~~~ 119 (305)
+..-.+.|..+-..|||+.+..-+. .++.++++.+...... +-. ++ .|. .+..-.++..+.+... +
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~-----d 289 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE-----D 289 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC-----C
Confidence 3334466778888999998877665 6788998865432211 111 11 111 1111223333333322 2
Q ss_pred eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE
Q 021925 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (305)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 199 (305)
+.+..|-..+.........++.++-...++..+.-..+.+-+++-+..|++..+.....+.+-.-. .-..+..+++
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~ 365 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAM 365 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh----hhcCcceeee
Confidence 222223222222222222333333333444444444445677888888999888765444432221 2335667899
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925 200 AADGSHFLTGSLDKSAKLWDARTLELIKT 228 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 228 (305)
||++.+|++-. .|.++++.+++..+.-+
T Consensus 366 Sp~~~~Ll~e~-~gki~~~~l~Nr~Peis 393 (733)
T COG4590 366 SPNQAYLLSED-QGKIRLAQLENRNPEIS 393 (733)
T ss_pred Ccccchheeec-CCceEEEEecCCCCCcc
Confidence 99999888754 56799998887655433
No 437
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.50 E-value=1.5 Score=33.05 Aligned_cols=142 Identities=13% Similarity=0.039 Sum_probs=81.1
Q ss_pred CcceEEEEEcCCCcEEEEEeCC---------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925 52 NGAVWCCDVSRDSMTLITGSAD---------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (305)
Q Consensus 52 ~~~v~~i~~~~~~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (305)
+.+.+.-..+|+|++++-.-.| |.++.|-.. ++....+..-.-...++|+.+.+.+...... +..+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl----n~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSL----NYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccC----ceEE
Confidence 3456667789999885432222 445555432 2222233333444567888777777665432 2222
Q ss_pred EEEEeecccC-CCCCceEEEEec----cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925 123 HVKRIARDPA-DQGGESVLILKG----PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197 (305)
Q Consensus 123 ~~~~~~~~~~-~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 197 (305)
..++...... ....+.+..++. ..-..-.++...+|++.++.-..|+|...|..+|+.+..+.. ....++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsc 259 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSC 259 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEE
Confidence 2233111100 011122222222 111223455566788888888899999999999999998873 46789999
Q ss_pred EEcC
Q 021925 198 AKAA 201 (305)
Q Consensus 198 ~~~~ 201 (305)
+|--
T Consensus 260 cFgG 263 (310)
T KOG4499|consen 260 CFGG 263 (310)
T ss_pred EecC
Confidence 9964
No 438
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=94.48 E-value=0.71 Score=29.11 Aligned_cols=46 Identities=22% Similarity=0.101 Sum_probs=32.8
Q ss_pred EeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 209 GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 209 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
+..+|++.-||..+++..-....-.-.+.++++||+.+++++-...
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 4457889999999988766666555679999999999988874433
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.47 E-value=1 Score=30.75 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=60.6
Q ss_pred EEEEEcCCCCEEEEeeCCCceEEEEcCCC--------eeeEEecCCCcceEEEEEcC-----CCcEEEEEeCCCcEEEEe
Q 021925 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNG--------ERLGTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAKLWN 80 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--------~~~~~~~~~~~~v~~i~~~~-----~~~~l~s~~~dg~v~vwd 80 (305)
..-+|......|++++.-|.|.|++.... ..+..+. -...|++++-.+ +...|+.|+. ..|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 34467677778999999999999986633 2334444 456677775433 2346777665 6799999
Q ss_pred cCCCCeeEEEeeCCCceEEEEe
Q 021925 81 VETGAQLFTFNFDSPARSVDFA 102 (305)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~ 102 (305)
++....+.....+..+.++.+-
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g 101 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIG 101 (136)
T ss_pred cccCchhhhhhCccceeEEEEE
Confidence 9988777666677777777764
No 440
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.23 E-value=0.53 Score=41.36 Aligned_cols=73 Identities=25% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCCCEEEEeeCCCceEEEEcCC----CeeeEEe-----------cC-----------CCcceEEEEEcC----CCcEEEE
Q 021925 20 KDGDLLFSCAKDHTPTVWFADN----GERLGTY-----------RG-----------HNGAVWCCDVSR----DSMTLIT 69 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~----~~~~~~~-----------~~-----------~~~~v~~i~~~~----~~~~l~s 69 (305)
++...++.+..||.+....... +...... .+ ..+.+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888899888877654 2111111 00 123455666666 6679999
Q ss_pred EeCCCcEEEEecCCCCeeEEEee
Q 021925 70 GSADQTAKLWNVETGAQLFTFNF 92 (305)
Q Consensus 70 ~~~dg~v~vwd~~~~~~~~~~~~ 92 (305)
.+.|+++|+||+.+++++.....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999877653
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.21 E-value=4 Score=36.64 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=87.8
Q ss_pred CCEEEEeeCCCceEEEEcCCCeee------EEec----------------CCCcceEEEEEcC--CCcEEEEEeCCCcEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERL------GTYR----------------GHNGAVWCCDVSR--DSMTLITGSADQTAK 77 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~------~~~~----------------~~~~~v~~i~~~~--~~~~l~s~~~dg~v~ 77 (305)
+++++.|. .+.|.||+....... ..+. .....|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666655 779999987642221 1110 0112355555443 456888999999999
Q ss_pred EEecC-------CC-------------CeeEEEeeCCCceEEEEe--cCCceEEEeCCcceeeeeeEEEEEeecccCCCC
Q 021925 78 LWNVE-------TG-------------AQLFTFNFDSPARSVDFA--VGDKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (305)
Q Consensus 78 vwd~~-------~~-------------~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (305)
+|..+ .. ++...+..+..+..++++ ...++++++++. ..+.+..........
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs-----~~VTVFaf~l~~~r~- 201 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNS-----QEVTVFAFALVDERF- 201 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCC-----ceEEEEEEecccccc-
Confidence 99652 11 123344467788899998 788888888763 233333332211000
Q ss_pred CceEEEEeccCCCeeEEEEcCCC---C---EEEEeeCCCcEEEEeC
Q 021925 136 GESVLILKGPQGRINRAVWGPLN---R---TIISAGEDAIVRIWDT 175 (305)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~iwd~ 175 (305)
....-..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 202 --~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 --YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 000011266778999997754 2 7788889999999888
No 442
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.20 E-value=2.9 Score=35.08 Aligned_cols=148 Identities=12% Similarity=0.117 Sum_probs=86.3
Q ss_pred CCcEEEEEeCCCcEEEEecCCCC-----eeEEEeeCCCceEEEEec-----CCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925 63 DSMTLITGSADQTAKLWNVETGA-----QLFTFNFDSPARSVDFAV-----GDKLAVITTDPFMELNSAIHVKRIARDPA 132 (305)
Q Consensus 63 ~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (305)
+...|++||..|.++|++...+. .+...+.+.+|..+..-+ +...+++-.... +.++.+.....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~k------l~vY~v~~~~g 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRK------LSVYSVSLVDG 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCE------EEEEEEEecCC
Confidence 34589999999999999975443 455666788888777543 233444444322 22333321111
Q ss_pred C---CCCceEEEEeccC--CCeeEEEEcCC-----CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC
Q 021925 133 D---QGGESVLILKGPQ--GRINRAVWGPL-----NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202 (305)
Q Consensus 133 ~---~~~~~~~~~~~~~--~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 202 (305)
. ...-.+.....|. .....++.-|- ..++..=+.||.+.+++-+.-...+.+.. .-..+ .+++.+.
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg---Pl~Y~~~ 185 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG---PLCYCPR 185 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc---CeEEeec
Confidence 1 1111222333333 23334444442 25778889999999999765443343331 11233 3577777
Q ss_pred CCEEEEEeCCCeEEEEEc
Q 021925 203 GSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 203 ~~~l~~~~~dg~i~iwd~ 220 (305)
-..|++++.+..+.-|..
T Consensus 186 tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCEEEEecCceeEEEecH
Confidence 778888888888888854
No 443
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.16 E-value=4.6 Score=37.20 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=63.1
Q ss_pred CCCeeEEEEcCCC-CEEEEeeCCCcEEEEeCCCCcE-----eeeeccccC-------CccceEEEEEcCCCCEEEEEeCC
Q 021925 146 QGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL-----LKESDKETG-------HKKTITSLAKAADGSHFLTGSLD 212 (305)
Q Consensus 146 ~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d 212 (305)
..+...++|+|.. +.||.....|...|||+..... ........+ ....-..+.|.++.+.|+.++ .
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence 3467789999854 6899999999999999921111 111100001 113344788988877888776 4
Q ss_pred CeEEEEEcCCceEEE---EEeeCCCeeEEEecCC
Q 021925 213 KSAKLWDARTLELIK---TYVTERPVNAVTMSPL 243 (305)
Q Consensus 213 g~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~ 243 (305)
..+.++|+++..... .......|.++.-+|.
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 458999998776533 2224567888888877
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=2.4 Score=35.39 Aligned_cols=107 Identities=8% Similarity=0.043 Sum_probs=73.0
Q ss_pred ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec-cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
...++|.++.||+|++.+|.--.+..|.+++....+...... ........|....|+.+ .-+|..+..| +.+|....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 345699999999999999999999999999985433322221 11133456888999876 4566666555 66665443
Q ss_pred c-eEEEEEe-eCCCeeEEEecCCCCcEEEeeC
Q 021925 223 L-ELIKTYV-TERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 223 ~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
. +.++..+ +...|+-..|.++-+.++.+++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2 2333333 6667888899999888776655
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.05 E-value=1.9 Score=32.22 Aligned_cols=151 Identities=9% Similarity=0.073 Sum_probs=81.7
Q ss_pred EEEEEeCCCcEEEEecC--CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee-eeeEEEEEeecccCCCC-------
Q 021925 66 TLITGSADQTAKLWNVE--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NSAIHVKRIARDPADQG------- 135 (305)
Q Consensus 66 ~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 135 (305)
.|..+...+.|.+|++. ..+....+..-+.+..+.++..|+++++--...... ...++.+--++......
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 44443556789999987 445677777778999999999999998865432211 00111111111100000
Q ss_pred -------------CceEEEEe-ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE-eee-----ecc-ccCC--cc
Q 021925 136 -------------GESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKE-----SDK-ETGH--KK 192 (305)
Q Consensus 136 -------------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-----~~~-~~~~--~~ 192 (305)
......++ +-..++.+++..|-..-|+.|+. +.+.+|.+..... ... +.. .-.| .-
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~ 188 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNF 188 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecCc
Confidence 11122222 22446788888886555666654 6788998865433 111 110 0011 22
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
.+..+++. +.++|..+ +-.+++..+
T Consensus 189 ~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 189 KPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred eEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 34556665 44777666 455666654
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.03 E-value=2.4 Score=33.48 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcC------CC-eeeEEecC-----CCcceEEEEEcCCCc------------EEE
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFAD------NG-ERLGTYRG-----HNGAVWCCDVSRDSM------------TLI 68 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~------------~l~ 68 (305)
-..|+++|.+..-++....+...+||.. .. ..+-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578999999888887778899999976 12 22333331 234577888864322 367
Q ss_pred EEeCCCcEEEEecCCCCe-----eEEEe--eCCCc-eEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCC---
Q 021925 69 TGSADQTAKLWNVETGAQ-----LFTFN--FDSPA-RSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQG--- 135 (305)
Q Consensus 69 s~~~dg~v~vwd~~~~~~-----~~~~~--~~~~v-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 135 (305)
.+++||+|.-|...-+.. ...+. ....+ ..+++.. .+..+..+.- ....+.+.+-........
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF----~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF----RQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc----CCCceEEecCccccccCCCCc
Confidence 788999999998533222 11122 11222 2334332 2344444321 122233222211100000
Q ss_pred --------C--ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC----
Q 021925 136 --------G--ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---- 201 (305)
Q Consensus 136 --------~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 201 (305)
. -.++.+ +..-.|+-..-.+++..=+.|.--|.|-++|+. ++.++++... +.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFG 257 (336)
T ss_pred cCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhC
Confidence 0 000111 011112222223333333344455799999985 7788877422 3445566777765
Q ss_pred --CCCEEEEEeCCCeEEEEEcCCceEEEEEee--C-----CCeeEEEecC
Q 021925 202 --DGSHFLTGSLDKSAKLWDARTLELIKTYVT--E-----RPVNAVTMSP 242 (305)
Q Consensus 202 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~v~~~~~~~ 242 (305)
.+.+|+---.||+|..+|..+++.+..+.. . ..++.++|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 455565555699999999999988877762 2 2357788765
No 447
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.51 E-value=4.2 Score=34.49 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 192 KTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
..|.++...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4489999999889999999999999999974
No 448
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=5.4 Score=37.80 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=26.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCC
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADN 41 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 41 (305)
.....++|+|....+|.++..|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3566789999999999999999999996543
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=93.29 E-value=5 Score=34.71 Aligned_cols=63 Identities=5% Similarity=-0.046 Sum_probs=33.1
Q ss_pred CCCEEEEeeCCC-----ceEEEEcCCCeeeE--EecCCCcceEEEEEcCCCcEEEEEeCC--CcEEEEecCCCC
Q 021925 21 DGDLLFSCAKDH-----TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGA 85 (305)
Q Consensus 21 ~~~~l~s~~~dg-----~v~iw~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d--g~v~vwd~~~~~ 85 (305)
++..++.||.++ .+..||..+++... .+....... +++ .-++...+.||.+ ..+..||..+++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe
Confidence 445567777543 46678877665322 121111111 122 2366677777754 357778876553
No 450
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=0.94 Score=42.63 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=90.0
Q ss_pred eCCCceEEEEcCCCeeeEEecCCCcceEEEEEc--------CCCcEEEEEeCCCcEEEEecC----CCCe---e--EEEe
Q 021925 29 AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--------RDSMTLITGSADQTAKLWNVE----TGAQ---L--FTFN 91 (305)
Q Consensus 29 ~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~--------~~~~~l~s~~~dg~v~vwd~~----~~~~---~--~~~~ 91 (305)
+-|+.+.+|+.+++.....+.+-+..|..+..- |.=++++..+.--.|.++-+. ++.. . .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458899999999988888888777777776642 222344443443456666432 1111 1 1222
Q ss_pred -eCCCceEEEEecCCceEEEeCCcceeeee--eEEEEEeecccCCC--------CCceEEEEe-ccCCCeeEEEEcCCCC
Q 021925 92 -FDSPARSVDFAVGDKLAVITTDPFMELNS--AIHVKRIARDPADQ--------GGESVLILK-GPQGRINRAVWGPLNR 159 (305)
Q Consensus 92 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~i~~~~~~~~~~ 159 (305)
.+..+.++....+|+.++++.++...... ....|--.+..... -...+..+. .+..+|..+......+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 35678889988899999988765221110 00011110000000 001122223 5678999999999889
Q ss_pred EEEEeeCCCcEEEEeCCC
Q 021925 160 TIISAGEDAIVRIWDTET 177 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~ 177 (305)
.+.+-++.|.|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 999999999999999976
No 451
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.23 E-value=4.4 Score=33.93 Aligned_cols=225 Identities=9% Similarity=-0.003 Sum_probs=101.0
Q ss_pred CCCEEEEee-CCCceEEEEcCC----CeeeEEecC---CC----cceEEEEEcCCCcEEEEEeC------CCcEEEEecC
Q 021925 21 DGDLLFSCA-KDHTPTVWFADN----GERLGTYRG---HN----GAVWCCDVSRDSMTLITGSA------DQTAKLWNVE 82 (305)
Q Consensus 21 ~~~~l~s~~-~dg~v~iw~~~~----~~~~~~~~~---~~----~~v~~i~~~~~~~~l~s~~~------dg~v~vwd~~ 82 (305)
+.++|+..+ ..+.|+|.|+.+ .+..+.++. +. ..-..+-..|+|+.++|+-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456676665 678999999873 345555542 11 22334445678988887532 2558888888
Q ss_pred CCCeeEEEeeC----CCceEEEEecCCceEEEeCCc---------------ceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 83 TGAQLFTFNFD----SPARSVDFAVGDKLAVITTDP---------------FMELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 83 ~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
+.+.......+ ..-..+-+.|..+.++++.=. ...+-..+.+|++.. .+.++.+.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~------r~~~Q~id 239 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST------RKLLQTID 239 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT------TEEEEEEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC------CcEeeEEe
Confidence 88877777642 234567788887777775310 112334567777643 34455554
Q ss_pred ccC--CCeeEEEEc--CCCCEEEEee-CCCcEEEEeC-CCCc----Eeeeeccc--------------cCCccceEEEEE
Q 021925 144 GPQ--GRINRAVWG--PLNRTIISAG-EDAIVRIWDT-ETGK----LLKESDKE--------------TGHKKTITSLAK 199 (305)
Q Consensus 144 ~~~--~~i~~~~~~--~~~~~l~~~~-~dg~i~iwd~-~~~~----~~~~~~~~--------------~~~~~~v~~~~~ 199 (305)
-.. .....+.|. |+..+=++++ -.++|..|-. ..++ .+..+... ..-..-++.+..
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 332 224455554 4444444333 3555655543 3332 12222110 001345799999
Q ss_pred cCCCCEEEEEe-CCCeEEEEEcCCc---eEEEEEeeCCC-----------------eeEEEecCCCCcEEEee
Q 021925 200 AADGSHFLTGS-LDKSAKLWDARTL---ELIKTYVTERP-----------------VNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 200 ~~~~~~l~~~~-~dg~i~iwd~~~~---~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~ 251 (305)
|.|.++|..++ .+|.|+.||+... +++.++..++. ...+..|-||+.|.+.+
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99999987766 5899999999863 44444442222 25566777777666653
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=4.9 Score=33.72 Aligned_cols=152 Identities=13% Similarity=0.188 Sum_probs=86.8
Q ss_pred EEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEe-cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 14 TYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
+.+-|....+.|++. ..|.+.=|-+.. ....-.+ ....++|.++.|++|.+.||+--.|++|.+++....+.....
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 344555444444433 334445554332 1222222 235679999999999999999999999999998544332222
Q ss_pred e-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 91 N-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 91 ~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
. ....+....|+..-...++...+ +.++... .....++..+.|.-.|.-..|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-------~e~y~v~-----pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTEIAFITDQG-------IEFYQVL-----PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecCeeEEEEecCC-------eEEEEEc-----hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 2 23347788888775555544332 1222211 12234455667778888888888887554433
Q ss_pred --CCCcEEEEeCCCC
Q 021925 166 --EDAIVRIWDTETG 178 (305)
Q Consensus 166 --~dg~i~iwd~~~~ 178 (305)
....+.=+-++++
T Consensus 173 ~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 173 TVLENVLNPFHFRAG 187 (657)
T ss_pred cccccccccEEEeec
Confidence 3344444444443
No 453
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.92 E-value=0.24 Score=43.58 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=63.7
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 226 (305)
..++++.-+|.+..++.++.||.|++|+....+..+... ...+-..+.|...| |++..+|.++.-|. ++|-..
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~----~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq 87 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE----EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ 87 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh----hcCCccceeeeccc--eEEEeccchhheee-ccCcch
Confidence 346678888999999999999999999987655433332 22333445565443 77888899888886 445444
Q ss_pred EEEe----eCCCeeEEEecCCCCcEE
Q 021925 227 KTYV----TERPVNAVTMSPLLDHVC 248 (305)
Q Consensus 227 ~~~~----~~~~v~~~~~~~~~~~l~ 248 (305)
+++. ......++...|..+-++
T Consensus 88 qqfdyndqsekefss~~cdptaqnvv 113 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNVV 113 (1636)
T ss_pred hhccccchhhhhccceecCchhhhhh
Confidence 4444 334566777778766544
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.59 E-value=4.8 Score=32.73 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=64.3
Q ss_pred CeeEEEEcCCCCEEEEeeCC------CcEEEEeCCCCcEeeeeccc------------cCCccceEEEEEcCCCCEEEEE
Q 021925 148 RINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDKE------------TGHKKTITSLAKAADGSHFLTG 209 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~ 209 (305)
...++++.+++.++++.=.+ ..|+.++.. ++....+..+ ...+...-+|+++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34567776777766665556 788888876 6655544211 1245678899999999976665
Q ss_pred eC-----CC--e-------EEEE--EcCC-ceEEEEEe--e--------CCCeeEEEecCCCCcEEEe
Q 021925 210 SL-----DK--S-------AKLW--DART-LELIKTYV--T--------ERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 210 ~~-----dg--~-------i~iw--d~~~-~~~~~~~~--~--------~~~v~~~~~~~~~~~l~~~ 250 (305)
.+ |+ . ++++ |..+ ++....+. . ...+..+.+-+++++++.-
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 43 22 1 4444 5444 33344332 1 3568899999999977763
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.53 E-value=0.013 Score=48.39 Aligned_cols=138 Identities=12% Similarity=0.170 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (305)
......|-|++.-++.++.+..|..||-. ++.......
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~----------------------------------------- 73 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP----------------------------------------- 73 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC-----------------------------------------
Confidence 33455677777668888888888888843 333332221
Q ss_pred CCCceEEEEeccCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC
Q 021925 134 QGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 212 (305)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 212 (305)
.+....++|..++..++ .+-..+.+.+||+.+.. -.+++....+.... +.|++....++.+...
T Consensus 74 ------------tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg~~s~sl--l~wsKg~~el~ig~~~ 138 (615)
T KOG2247|consen 74 ------------TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGGTSSKSL--LAWSKGTPELVIGNNA 138 (615)
T ss_pred ------------chhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccCcchHHH--HhhccCCccccccccc
Confidence 22233455555554333 44557899999997543 22232211232333 7899999999999999
Q ss_pred CeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEE
Q 021925 213 KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVC 248 (305)
Q Consensus 213 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 248 (305)
|.+.+++..+.+.+.... |..++.++++.+.+..+.
T Consensus 139 gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 139 GNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 999999988776655554 788899999999875444
No 456
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.25 E-value=4.9 Score=32.00 Aligned_cols=192 Identities=10% Similarity=0.057 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCCEEEE--eeC----------CCceEEEEcCCCeeeEEecC------CCcceEEEEEcCC-C----cEEE
Q 021925 12 PLTYLKYNKDGDLLFS--CAK----------DHTPTVWFADNGERLGTYRG------HNGAVWCCDVSRD-S----MTLI 68 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s--~~~----------dg~v~iw~~~~~~~~~~~~~------~~~~v~~i~~~~~-~----~~l~ 68 (305)
.|..+...+++++-+. |.- .-.|.+||+.+++.++++.- ..+.+..+.+... + .+..
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3566777777664332 211 12788999999998887752 2456788888662 1 2333
Q ss_pred -EEeCCCcEEEEecCCCCeeEEEee--------------------CCCceEEEEec---CCceEEEeCCcceeeeeeEEE
Q 021925 69 -TGSADQTAKLWNVETGAQLFTFNF--------------------DSPARSVDFAV---GDKLAVITTDPFMELNSAIHV 124 (305)
Q Consensus 69 -s~~~dg~v~vwd~~~~~~~~~~~~--------------------~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 124 (305)
+=+..+-|.|+|+.+++.-..... ...+..++.+| +++.+....- .....
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l------ss~~l 155 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL------SSRKL 155 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET------T-SEE
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC------CCCcE
Confidence 333456799999998865444431 12233333333 2222322210 11122
Q ss_pred EEeecccCC--CC------CceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc---EeeeeccccCCccc
Q 021925 125 KRIARDPAD--QG------GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK---LLKESDKETGHKKT 193 (305)
Q Consensus 125 ~~~~~~~~~--~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~ 193 (305)
+.+...... .. ...+..+....+....++.+++|..+++--..+.|..||..+.- ....+......-..
T Consensus 156 y~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~ 235 (287)
T PF03022_consen 156 YRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW 235 (287)
T ss_dssp EEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred EEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec
Confidence 222211100 00 01122332222466778999999988888889999999988621 12222211122457
Q ss_pred eEEEEEcC--CCCEEEEE
Q 021925 194 ITSLAKAA--DGSHFLTG 209 (305)
Q Consensus 194 v~~~~~~~--~~~~l~~~ 209 (305)
+..+.+.+ +|.+.+..
T Consensus 236 pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 236 PDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEEE-T--TS-EEEEE
T ss_pred cceeeeccccCceEEEEE
Confidence 78888888 66554444
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.16 E-value=0.034 Score=46.01 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=103.2
Q ss_pred EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCC
Q 021925 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP 95 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 95 (305)
+.|++.+..++.+...|.+.|++..+.+.......|..+++++++.+.+ +.+.++.|..+.+-... ++........+.
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qe-geta~ltevgge 200 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQE-GETASLTEVGGE 200 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhc-cceeeeeeccCc
Confidence 5788888888888889999999987776665555699999999999876 56777777776665543 333333332222
Q ss_pred ceEEE--------EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 96 ARSVD--------FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 96 v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
...++ |...+..+...-.+..... ..... ....+....++...+.+.|..|-.||. |..+..-
T Consensus 201 pdnm~~~y~k~n~w~kage~m~sVvsgKkhl~-------yak~n-E~D~pval~fq~~~gni~cyrwylDg~-i~igf~a 271 (615)
T KOG2247|consen 201 PDNMDFFYGKVNGWGKAGETMVSVVSGKKHLM-------YAKYN-ELDEPVALQFQEKYGNIHCYRWYLDGY-ILIGFDA 271 (615)
T ss_pred cchhhhheeeeeccccccceeeeeeecHHHHH-------HHhhc-CCCCccceEeeecCCceeEEEEecccc-ccccccc
Confidence 22222 1112222221111000000 00000 111122236667778899999988875 5556666
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcC
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 201 (305)
|.|..-...+++....+.....+.+.+..++.|.
T Consensus 272 g~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq 305 (615)
T KOG2247|consen 272 GYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ 305 (615)
T ss_pred eeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence 7777777777776655543335666666666554
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=92.10 E-value=5.7 Score=32.45 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=60.8
Q ss_pred CCCeeEEEEcCCCCEEEEeeCCCcEEE-EeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 146 QGRINRAVWGPLNRTIISAGEDAIVRI-WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
.+.+..+.+.|++.+++++. .|.+.. +|- .++.-..... .....++++.+.++++.++++ ..|.+++=....++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQR--NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeC--CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 45678899999887665554 465443 221 2222222221 345688999999998876655 56766543334443
Q ss_pred EEEEEe-----eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 225 LIKTYV-----TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 225 ~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
.-.... ....+.++.+.|+++.++++ .++..
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v 282 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL 282 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence 322222 12347888999988765554 44543
No 459
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.09 E-value=4.7 Score=31.44 Aligned_cols=219 Identities=12% Similarity=0.004 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN- 91 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~- 91 (305)
-..++-.|||..-+++...+.|---|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+ +.++.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-vt~f~l 141 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-VTRFPL 141 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc-eEEeec
Confidence 4566677788777777777777777777887665544555556778888888766654333 34445544443 23333
Q ss_pred ----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCEEEEeeC
Q 021925 92 ----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 92 ----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~ 166 (305)
.........|.+.|.+-+++..+...... .....+..+... ....+.++..|+|..-++.-.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLd-------------Pa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLD-------------PARNVISVFPAPQGGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecC-------------cccCceeeeccCCCCCCcceEECCCCcEEEEecc
Confidence 34456677888888888887643322111 011223333332 234577889999988777777
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEecCC
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPL 243 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~ 243 (305)
+..|-..|..++. -..+.........-..+--+|.|+.-++....+.+..+|..... -.++. .+..-.++.....
T Consensus 209 gnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~ 286 (353)
T COG4257 209 GNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRH 286 (353)
T ss_pred ccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccC
Confidence 7888888887763 33343333434455666677888888887778888888866543 23333 3334455555555
Q ss_pred CCcEE
Q 021925 244 LDHVC 248 (305)
Q Consensus 244 ~~~l~ 248 (305)
++.-.
T Consensus 287 grVW~ 291 (353)
T COG4257 287 GRVWL 291 (353)
T ss_pred CcEEe
Confidence 55443
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.02 E-value=2 Score=31.15 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=24.9
Q ss_pred ceEEEEEcCCC------cEEEEEeCCCcEEEEecCCC
Q 021925 54 AVWCCDVSRDS------MTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 54 ~v~~i~~~~~~------~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+..++|||.| -.|++.+.++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78999999944 26788899999999986643
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.77 E-value=1 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=20.1
Q ss_pred cCCCcceEEEEEcCCCcEEEEEeC-C--CcEEEE
Q 021925 49 RGHNGAVWCCDVSRDSMTLITGSA-D--QTAKLW 79 (305)
Q Consensus 49 ~~~~~~v~~i~~~~~~~~l~s~~~-d--g~v~vw 79 (305)
....+.-....|+|||+.|+-++. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556788999999998876554 4 555555
No 462
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.58 E-value=0.69 Score=39.00 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=48.5
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
-++|+|+..|.|++||.-..+....+.+-...|..+....+|+++++.+. ..+.+-|++
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 48999999999999997655566667778889999999999998877666 578888764
No 463
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.53 E-value=0.17 Score=45.36 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=46.0
Q ss_pred ceEEEEEcC---CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEE-----------EcCCCcEEEEEeCCCcEE
Q 021925 12 PLTYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-----------VSRDSMTLITGSADQTAK 77 (305)
Q Consensus 12 ~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~-----------~~~~~~~l~s~~~dg~v~ 77 (305)
.+.-+.|.| +..++..+-.++++++.+..+... ..+.+|...+..++ .+|||+.++.++.||.++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 345556655 556777778888998877654332 44555776666654 467777777777777777
Q ss_pred EEec
Q 021925 78 LWNV 81 (305)
Q Consensus 78 vwd~ 81 (305)
.|.+
T Consensus 261 f~Qi 264 (1283)
T KOG1916|consen 261 FYQI 264 (1283)
T ss_pred eeee
Confidence 7764
No 464
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.33 E-value=12 Score=34.62 Aligned_cols=93 Identities=17% Similarity=0.020 Sum_probs=63.6
Q ss_pred cceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCe-----eeEEecCCC----------cceEEEEEcCCCcEEEEEeCCC
Q 021925 11 RPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN----------GAVWCCDVSRDSMTLITGSADQ 74 (305)
Q Consensus 11 ~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~~----------~~v~~i~~~~~~~~l~s~~~dg 74 (305)
.+..+++|+| +.+.||.....|.-.||++.... .......+. +.-..+.|.++-+.|+.++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 3577899999 66799999999999999992111 111111111 22347889888888888776 5
Q ss_pred cEEEEecCCCCeeE---EEeeCCCceEEEEecC
Q 021925 75 TAKLWNVETGAQLF---TFNFDSPARSVDFAVG 104 (305)
Q Consensus 75 ~v~vwd~~~~~~~~---~~~~~~~v~~~~~~~~ 104 (305)
.+.++|+++..... .......+..+.-++.
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 79999998776533 2225567778877776
No 465
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=90.70 E-value=0.91 Score=23.21 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=24.7
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEEeeCCC
Q 021925 205 HFLTGSLDKSAKLWDARTLELIKTYVTERP 234 (305)
Q Consensus 205 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 234 (305)
.+..++.+|.++-.|.++|+.+..++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 356668999999999999999998885443
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.52 E-value=1.4 Score=22.51 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=19.1
Q ss_pred cCCCeeEEEEcCCCCEEEEeeC-C--CcEEEE
Q 021925 145 PQGRINRAVWGPLNRTIISAGE-D--AIVRIW 173 (305)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~~~~~-d--g~i~iw 173 (305)
....-....|+|||+.|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445677899999998886553 4 555554
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.25 E-value=8.8 Score=31.24 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=64.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCc------eEEEEcCC--C--eeeE-----EecCCCc--------ceEEEEEcCCCcE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHT------PTVWFADN--G--ERLG-----TYRGHNG--------AVWCCDVSRDSMT 66 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~------v~iw~~~~--~--~~~~-----~~~~~~~--------~v~~i~~~~~~~~ 66 (305)
-+.+..+.+.+++..+++.+.+|. +...++.. + ..+. .+..-.+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356889999976666666677777 55555443 1 1111 1111111 3347888778877
Q ss_pred EEEEeCC------CcEEEEecCCCCeeEEEe----------------eCCCceEEEEecCCceEEEeCCcc
Q 021925 67 LITGSAD------QTAKLWNVETGAQLFTFN----------------FDSPARSVDFAVGDKLAVITTDPF 115 (305)
Q Consensus 67 l~s~~~d------g~v~vwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~~~~~ 115 (305)
+++.-.+ ..|..++.. |+....+. .+.....++++|++..++++....
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence 7776556 678888866 65544442 233467899999999666665543
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=3.3 Score=35.31 Aligned_cols=77 Identities=8% Similarity=0.039 Sum_probs=53.9
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEE---------cCCCeeeEE---e--------cCCCcceEEEEEcCCC---cEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWF---------ADNGERLGT---Y--------RGHNGAVWCCDVSRDS---MTL 67 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~---------~~~~~~~~~---~--------~~~~~~v~~i~~~~~~---~~l 67 (305)
-.|..+..++.|..++-+|.+|.+.++= +++|+.... + ....-.+..++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3577888999999999999999877652 223432211 1 1122357788999965 577
Q ss_pred EEEeCCCcEEEEecCCCCee
Q 021925 68 ITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 68 ~s~~~dg~v~vwd~~~~~~~ 87 (305)
..-+.|..+++||+.+.+.+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 78888999999998766544
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=7.9 Score=30.58 Aligned_cols=161 Identities=9% Similarity=0.011 Sum_probs=89.0
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecc
Q 021925 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 130 (305)
Q Consensus 52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (305)
.+-+..+.++.+ +...+..+.-++|.|+.+........ .+..-..-.+.-.|+++.++.- .....+.++..
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl-----ddgfLivdvsd- 157 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL-----DDGFLIVDVSD- 157 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeec-----cCcEEEEECCC-
Confidence 345667777644 66667777779999998776544443 1111233334445555555431 11122222221
Q ss_pred cCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe
Q 021925 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 210 (305)
...................++.| |++-..+..|+-+.+-|+.......-+... .....+.++..+++.-+++..
T Consensus 158 --pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 158 --PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred --CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEc-
Confidence 12223334444455555667776 677778888999999999865433322211 233467788888775554443
Q ss_pred CCCeEEEEEcCCceEEE
Q 021925 211 LDKSAKLWDARTLELIK 227 (305)
Q Consensus 211 ~dg~i~iwd~~~~~~~~ 227 (305)
+--+.+-|..+.+...
T Consensus 232 -~egvlivd~s~~ssp~ 247 (370)
T COG5276 232 -DEGVLIVDVSGPSSPT 247 (370)
T ss_pred -ccceEEEecCCCCCce
Confidence 3336777766555333
No 470
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.46 E-value=1.2 Score=21.62 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEE
Q 021925 205 HFLTGSLDKSAKLWDARTLELIKTY 229 (305)
Q Consensus 205 ~l~~~~~dg~i~iwd~~~~~~~~~~ 229 (305)
.++.++.+|.+..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5778888999999999999887654
No 471
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.15 E-value=13 Score=31.72 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=41.5
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE--eeeeccc--cCCccceEEEEEcCCC
Q 021925 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKE--TGHKKTITSLAKAADG 203 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~--~~~~~~v~~~~~~~~~ 203 (305)
.+...-...+.|+|.|++++|++--..|.|++++..++.. +..+... .........|+++|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3444456778999999998777665569999998665432 2222211 1135678899999874
No 472
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.83 E-value=20 Score=33.42 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=67.1
Q ss_pred eeEEEEcCC-CCEEEEee----------CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 149 INRAVWGPL-NRTIISAG----------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 149 i~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
+.++.|..| +.+++.|. ..|.|.++.....+.++...+. .-.+.+.++..- +|+++|. -...|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f-ngkllA~--In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF-NGKLLAG--INQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh-CCeEEEe--cCcEEEE
Confidence 445557776 56777665 2477888887764444433211 123455554432 5665554 4667999
Q ss_pred EEcCCceEEEEE-eeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 218 WDARTLELIKTY-VTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 218 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
|+..+.+.++.- .+..++..+...-.|..+++|.-.+..
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE
Confidence 999888555443 377788999999999999999766554
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.60 E-value=3.5 Score=29.91 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=25.5
Q ss_pred CCeeEEEEcCCC------CEEEEeeCCCcEEEEeCCC
Q 021925 147 GRINRAVWGPLN------RTIISAGEDAIVRIWDTET 177 (305)
Q Consensus 147 ~~i~~~~~~~~~------~~l~~~~~dg~i~iwd~~~ 177 (305)
..+.+++|||.| -.|++.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999965 3788889999999998663
No 474
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=88.55 E-value=1.7 Score=22.19 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=24.7
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEEEeeCCC
Q 021925 66 TLITGSADQTAKLWNVETGAQLFTFNFDSP 95 (305)
Q Consensus 66 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 95 (305)
.++.++.||.|.-.|.++|+.+..++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 456668999999999999999998875443
No 475
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=88.28 E-value=12 Score=30.07 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc-c----eEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-A----VWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~----v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.|+++...++|.+|+++-.-.+|.+.+.++|+.+..+.+... . -...++-.+-+.+-.+..++.|.++|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 478888889999999988888999999999999998876522 1 1123343344555555678899999863
No 476
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.17 E-value=15 Score=31.07 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=41.5
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
..|..=+.||.+.+++-+.......+.. ---...+.+.+....|++++.+..|.-|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4677789999999998665444444443 222344678887788999998888888864
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.11 E-value=12 Score=33.96 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=32.8
Q ss_pred eEEEEEcCCCcEEEEEeCCCc-----EEEEec---CCCCeeEEEeeCCCceEEEEecCCceEEEeCCc
Q 021925 55 VWCCDVSRDSMTLITGSADQT-----AKLWNV---ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP 114 (305)
Q Consensus 55 v~~i~~~~~~~~l~s~~~dg~-----v~vwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 114 (305)
-..+.|-|+|..+++-+.||. |..+.. +-|+.-............+|+-....++.+..+
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n 316 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGN 316 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcc
Confidence 345889999999999776543 444542 222222222334444555555555555544443
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.94 E-value=3.8 Score=36.76 Aligned_cols=80 Identities=10% Similarity=0.038 Sum_probs=56.1
Q ss_pred CceEecccccceEEEEEc--CCCCEEEEeeCCCceEEEEcCCC--ee-eEEecCCCcceEEEEEcCCC---c---EEEEE
Q 021925 2 RPILMKGHERPLTYLKYN--KDGDLLFSCAKDHTPTVWFADNG--ER-LGTYRGHNGAVWCCDVSRDS---M---TLITG 70 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~--~~~~~l~s~~~dg~v~iw~~~~~--~~-~~~~~~~~~~v~~i~~~~~~---~---~l~s~ 70 (305)
+|.....-...+.+++++ ...++||+++....|.||-.... +. ...-..|...|-+|+|.++. . .++++
T Consensus 155 ~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~ 234 (717)
T PF08728_consen 155 KPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT 234 (717)
T ss_pred CCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE
Confidence 455444456689999998 78888998888888888854431 11 11111256678999997733 2 67788
Q ss_pred eCCCcEEEEec
Q 021925 71 SADQTAKLWNV 81 (305)
Q Consensus 71 ~~dg~v~vwd~ 81 (305)
+-.|.+.+|++
T Consensus 235 dI~G~v~~~~I 245 (717)
T PF08728_consen 235 DISGEVWTFKI 245 (717)
T ss_pred eccCcEEEEEE
Confidence 88999999887
No 479
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.85 E-value=15 Score=30.67 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=25.1
Q ss_pred CCCEEEEeeCC-----------CceEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeCC
Q 021925 21 DGDLLFSCAKD-----------HTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSAD 73 (305)
Q Consensus 21 ~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~d 73 (305)
++.+.+.|+.+ ..+..||..+.+-...-....... .+....-+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45566666643 246677877655332211011111 111221367777777754
No 480
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=87.45 E-value=6.2 Score=35.76 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=55.4
Q ss_pred eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
.....++.+.++..| ++.++.+|.|.++...+............|...|+++....++-+++..+.| .++.++.++
T Consensus 623 ~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred ccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 344556666666543 5677889999999998876666665555677889999998887766666555 455556665
Q ss_pred ceEEE
Q 021925 223 LELIK 227 (305)
Q Consensus 223 ~~~~~ 227 (305)
.....
T Consensus 699 l~hlq 703 (925)
T KOG3522|consen 699 LWHLQ 703 (925)
T ss_pred cCCcc
Confidence 44333
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.42 E-value=17 Score=30.79 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCEEEEeeCCCcEEEE-eCCCCcEeeee---ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925 157 LNRTIISAGEDAIVRIW-DTETGKLLKES---DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iw-d~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 232 (305)
.|..+..++.||-|.-| |.+.+.. ..+ +...-...++..+.-..+.+-+++-+..|++.++.....+.+-.-..-
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 35568888899988776 5543321 111 100011233433333334456788888888888876555544333333
Q ss_pred CCeeEEEecCCCCcEEEeeCCcEEE
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~~~~ 257 (305)
..+.-+++||.+.++++-...+.+.
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~gki~~ 382 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQGKIRL 382 (733)
T ss_pred cCcceeeeCcccchheeecCCceEE
Confidence 3677889999999999876666543
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.25 E-value=22 Score=31.94 Aligned_cols=197 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEc---------CCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCc---E
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFA---------DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQT---A 76 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~---------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~---v 76 (305)
.+.|-++.+.++++.+++...+|.|.+||. .....-..--.+..-|.....-....++++.+. ++. .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
+++.+ .......+.....+....-..+..+.+..+.-.......+..+.+..............+......+.++.--.
T Consensus 209 kL~~l-~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISL-SNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEe-ccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE------cCCCCEEEEE
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK------AADGSHFLTG 209 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~ 209 (305)
..+.|++.. .+|++.|+.-...+..+.........+.--++ +.+.+.+|.+
T Consensus 288 ~nRvLLs~~--nkIyLld~~~~siLse~~~s~~~~~qll~~~vv~vkG~s~nt~T~a~~ 344 (670)
T PF10395_consen 288 PNRVLLSVN--NKIYLLDLKFESILSEFELSHPKPFQLLLSQVVPVKGNSQNTKTFALY 344 (670)
T ss_pred CCeEEEEcC--CEEEEEeehhhhhhhhhhccCCccceeeeeeeeeccccccCceEEEEE
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.75 E-value=19 Score=30.81 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=63.8
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEec-----CCCcceEEEEEcCCC------cEEEEEe-
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR-----GHNGAVWCCDVSRDS------MTLITGS- 71 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~-----~~~~~v~~i~~~~~~------~~l~s~~- 71 (305)
+...-.....|+|.|||++|++--..|.|++++..++.. +..+. ...+....|+++|+- .+|....
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 344456678999999998877655469999997654432 21111 135678999999873 2444332
Q ss_pred C---------CCcEEEEecCCC--C---eeEEEe-e----CCCceEEEEecCCceEEEeCCc
Q 021925 72 A---------DQTAKLWNVETG--A---QLFTFN-F----DSPARSVDFAVGDKLAVITTDP 114 (305)
Q Consensus 72 ~---------dg~v~vwd~~~~--~---~~~~~~-~----~~~v~~~~~~~~~~~~~~~~~~ 114 (305)
. ...|.-|.+... . ....+. . ...-..+.|.|++.+.+...+.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1 223444544321 1 111111 1 1235578899999877776664
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.72 E-value=3 Score=32.14 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=49.9
Q ss_pred EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-C--CeEEEEEcCC----ceEE---EEEeeCCCeeEEEe
Q 021925 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D--KSAKLWDART----LELI---KTYVTERPVNAVTM 240 (305)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~----~~~~---~~~~~~~~v~~~~~ 240 (305)
.+||+.+++.. .+.. ..+....+-++-+||++|.+|+. + ..+++++... .+.. ..+.....-.++..
T Consensus 49 ~~yD~~tn~~r-pl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEecCCCcEE-eccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 57888876543 2221 12223333457789999998885 3 3488888654 1111 11224444566777
Q ss_pred cCCCCcEEEeeCCcE
Q 021925 241 SPLLDHVCIGEPQTI 255 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~ 255 (305)
-|||+.|++|+....
T Consensus 126 L~DG~vlIvGG~~~~ 140 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNP 140 (243)
T ss_pred CCCCCEEEEeCcCCC
Confidence 899999999987743
No 485
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.99 E-value=20 Score=30.21 Aligned_cols=148 Identities=9% Similarity=0.054 Sum_probs=0.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC----
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA---- 85 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~---- 85 (305)
.+....+..+++|.+++.+..-..++-||-....-...-......+..+.+.+++..++++..-+ .++....++
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~--l~~S~d~G~~~~~ 315 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGG--LYVSKGTGLTEED 315 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCce--EEEecCCCCcccc
Q ss_pred -eeEEEeeC---CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe---ccCCCeeEEEEcCCC
Q 021925 86 -QLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---GPQGRINRAVWGPLN 158 (305)
Q Consensus 86 -~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 158 (305)
.......+ ..+..+.+.+++..++++..+....... .++.-.... .-....+.+.|.+++
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-------------~G~tW~~~~~~~~~~~~ly~v~f~~~~ 382 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-------------GGKSWKRDKGADNIAANLYSVKFFDDK 382 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC-------------CCcceeEccccCCCCcceeEEEEcCCC
Q ss_pred CEEEEeeCCCcEEEE
Q 021925 159 RTIISAGEDAIVRIW 173 (305)
Q Consensus 159 ~~l~~~~~dg~i~iw 173 (305)
+-+++| .+|.|.-|
T Consensus 383 ~g~~~G-~~G~il~~ 396 (398)
T PLN00033 383 KGFVLG-NDGVLLRY 396 (398)
T ss_pred ceEEEe-CCcEEEEe
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.45 E-value=28 Score=31.59 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=29.2
Q ss_pred CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 52 ~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
...++++.-+|.+.-++.++.||.|++++....+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 45578888889999999999999999999865544
No 487
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.01 E-value=29 Score=31.38 Aligned_cols=53 Identities=2% Similarity=0.002 Sum_probs=38.7
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCC
Q 021925 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLL 244 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 244 (305)
+.+..+..||+.++|+--..+|.|.+-+....+....+. ...+...++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 567889999999999999999999999888777666665 22233345554433
No 488
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=84.98 E-value=12 Score=34.05 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=49.9
Q ss_pred CceEecccccceEEEEEc----CCCC--EEEEeeCCCce-EEEEcCCCe-----eeEEec--CCCcceEEEEEcCCCcEE
Q 021925 2 RPILMKGHERPLTYLKYN----KDGD--LLFSCAKDHTP-TVWFADNGE-----RLGTYR--GHNGAVWCCDVSRDSMTL 67 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~----~~~~--~l~s~~~dg~v-~iw~~~~~~-----~~~~~~--~~~~~v~~i~~~~~~~~l 67 (305)
+|+.++......+.++.+ .+++ .|+.|+.+|+| ++-...+.. .+..++ .+..+|..|..++....|
T Consensus 399 ~P~l~~~~~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~L 478 (737)
T KOG3611|consen 399 RPLLVKTGDYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSL 478 (737)
T ss_pred CceEEecccceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeE
Confidence 466655446667777776 4554 46778888876 343333311 233332 255889999999988889
Q ss_pred EEEeCCCcEEE
Q 021925 68 ITGSADQTAKL 78 (305)
Q Consensus 68 ~s~~~dg~v~v 78 (305)
++|+..|.++|
T Consensus 479 yVgs~~gV~qv 489 (737)
T KOG3611|consen 479 YVGSRSGVVQV 489 (737)
T ss_pred EEEccCcEEEe
Confidence 99988875554
No 489
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=84.64 E-value=7.7 Score=24.35 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=32.2
Q ss_pred CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCC
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVET 83 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~ 83 (305)
-+.|..||..+ ......+ -...+.|.++|++++|..++. .+.|.++..+.
T Consensus 35 ~~~Vvyyd~~~--~~~va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 35 WGNVVYYDGKE--VKVVASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEEeCCE--eEEeecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 35666777432 2222232 234588999999988876654 78899998653
No 490
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.33 E-value=20 Score=28.83 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=48.3
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc--ceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
-++++...++|.+|++.-.-..|.+.|.++++.+..+.......- .-...++-.+-+++-.+..++.|.++|=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 367778888999999998889999999999999888862211000 1112333334444444556777777775
No 491
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.03 E-value=27 Score=30.25 Aligned_cols=190 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCCEEEEe---eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCc
Q 021925 20 KDGDLLFSC---AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96 (305)
Q Consensus 20 ~~~~~l~s~---~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v 96 (305)
.+|=++++. ...+...+.| .+|..+..+.........+...++|.+++..+ ..+..+|+. |+.+.....+...
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Q ss_pred ----eEEEEecCCceEEEeC-------CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-----------------
Q 021925 97 ----RSVDFAVGDKLAVITT-------DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR----------------- 148 (305)
Q Consensus 97 ----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 148 (305)
..+...|+|++++.+. . .....+.+...... ..++.+.....-+--
T Consensus 189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~-----~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~ 262 (477)
T PF05935_consen 189 YDFHHDIDELPNGNLLILASETKYVDED-----KDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS 262 (477)
T ss_dssp E-B-S-EEE-TTS-EEEEEEETTEE-TS------EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred cccccccEECCCCCEEEEEeecccccCC-----CCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccc
Q ss_pred ----------eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC----------------
Q 021925 149 ----------INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---------------- 201 (305)
Q Consensus 149 ----------i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------- 201 (305)
++++.+.+ ++.+++++-.-..|...|.++++....+-...+-........+.|
T Consensus 263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~ 342 (477)
T PF05935_consen 263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFD 342 (477)
T ss_dssp -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS--
T ss_pred cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCc
Q ss_pred --CCCEEEEEeCCC---eEEEEE
Q 021925 202 --DGSHFLTGSLDK---SAKLWD 219 (305)
Q Consensus 202 --~~~~l~~~~~dg---~i~iwd 219 (305)
-|+.-+.--.+| .|.++|
T Consensus 343 ~~~gQH~~~~~~~g~~~~l~vFD 365 (477)
T PF05935_consen 343 WFWGQHTAHLIPDGPQGNLLVFD 365 (477)
T ss_dssp --SS-EEEEE-TTS---SEEEEE
T ss_pred ccccccceEEcCCCCeEEEEEEE
No 492
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=83.86 E-value=23 Score=29.20 Aligned_cols=155 Identities=12% Similarity=-0.018 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEeeCCCceEEEEc--CCCeeeEE---ecCCC---cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 15 YLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGT---YRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~dg~v~iw~~--~~~~~~~~---~~~~~---~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
++..+.+.....+|..+|-|..-+. .+...... ..... ++-..++|...+.-|+.+..---+..-+.+.+..
T Consensus 69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a 148 (376)
T KOG1520|consen 69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA 148 (376)
T ss_pred eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcc
Q ss_pred eEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 87 LFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 87 ~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
..... .-.-...+...+++.+.++.+........-+.. +
T Consensus 149 ~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a------------------------------------~ 192 (376)
T KOG1520|consen 149 ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA------------------------------------A 192 (376)
T ss_pred eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe------------------------------------e
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 209 (305)
+.+..+|.+.-||..+.....-+. .-.-.+.++.|||+.+++.+
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld----~L~F~NGlaLS~d~sfvl~~ 236 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLD----GLYFPNGLALSPDGSFVLVA 236 (376)
T ss_pred ecCCCccceEEecCcccchhhhhh----cccccccccCCCCCCEEEEE
No 493
>PHA02790 Kelch-like protein; Provisional
Probab=82.81 E-value=31 Score=29.95 Aligned_cols=91 Identities=10% Similarity=-0.067 Sum_probs=43.0
Q ss_pred CCCEEEEeeCCC---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eC
Q 021925 157 LNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE 232 (305)
Q Consensus 157 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~ 232 (305)
+++..+.|+.++ .+..||.++.+-...-... ...... +++ .-+++..+.|+ .+.+||.++.+-...-. ..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cccccc-eEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence 466666776543 4778888765443221110 111111 222 23566666664 56788887654332111 11
Q ss_pred CCeeEEEecCCCCcEEEeeCC
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~ 253 (305)
.....-+..-+++..++||.+
T Consensus 436 ~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 436 PRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CccccEEEEECCEEEEECCcC
Confidence 111111223356666777644
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.66 E-value=25 Score=28.81 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=25.9
Q ss_pred CCCEEEEeeCC-----------CceEEEEcCCCeeeEEecCCCcceEEE-EE-cCCCcEEEEEeCC
Q 021925 21 DGDLLFSCAKD-----------HTPTVWFADNGERLGTYRGHNGAVWCC-DV-SRDSMTLITGSAD 73 (305)
Q Consensus 21 ~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~v~~i-~~-~~~~~~l~s~~~d 73 (305)
++++.+.|+.+ ..+..||..+.+-...-.......... .. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666667653 246677877655332211111111111 11 2367777777764
No 495
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.53 E-value=33 Score=30.01 Aligned_cols=233 Identities=11% Similarity=0.051 Sum_probs=106.4
Q ss_pred cCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCC-cEEEEEeC--CCcEEEEecCCCCeeEEEee
Q 021925 19 NKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDS-MTLITGSA--DQTAKLWNVETGAQLFTFNF 92 (305)
Q Consensus 19 ~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~--dg~v~vwd~~~~~~~~~~~~ 92 (305)
..++..++-+..+|.+..-.+.... .+..+..-.....++.+..++ .+|+.|+. |+.+.-|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 4466788888999999888765433 122222113445667776655 35666665 55666666555566677778
Q ss_pred CCCceEEEEecC----C-------ceEEEeCCcceeeeeeEEEEEeecccCCC-CCceEEEEeccCCCeeEEEEcC-CCC
Q 021925 93 DSPARSVDFAVG----D-------KLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVLILKGPQGRINRAVWGP-LNR 159 (305)
Q Consensus 93 ~~~v~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~ 159 (305)
-+++.++++.+. . .++++++.+. .+.+.. ++...... .......+.+ -..++.+.... +..
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~---~gsL~~--lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~ 372 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGK---RGSLRI--LRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHS 372 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGG---G-EEEE--EEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBS
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCC---CCcEEE--EeccCCceeeeeeccCCCC-ceEEEEeeecCCCce
Confidence 888999988642 1 3344433221 122211 11111000 0000011111 22333333322 145
Q ss_pred EEEEeeCCCcEEEEeCC---CCcEeeeecc--ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--eC
Q 021925 160 TIISAGEDAIVRIWDTE---TGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TE 232 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~---~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~ 232 (305)
+|+.+..+ .-+++.+. ....+..+.. .......+.+-.+. +..++=.... .|++.+...++....+. .+
T Consensus 373 ~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~ 448 (504)
T PF10433_consen 373 YLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAG 448 (504)
T ss_dssp EEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS
T ss_pred EEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCC
Confidence 66666554 34455553 2333322211 11122233333332 4455555544 48899988888777765 44
Q ss_pred CCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
..|.+.+... ..++++-.++......+..
T Consensus 449 ~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~ 477 (504)
T PF10433_consen 449 SIIVAASIND--PQVLVALSGGELVYFELDD 477 (504)
T ss_dssp ---SEEEESS--SEEEEEE-TTEEEEEEEET
T ss_pred CeEEEEEECC--CEEEEEEeCCcEEEEEEEC
Confidence 4566655554 4555555555544444443
No 496
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=81.24 E-value=18 Score=33.54 Aligned_cols=85 Identities=8% Similarity=0.014 Sum_probs=55.7
Q ss_pred EEEee-CCCcEEEEeCCCCcEeee-eccccCCccceEEEEEcCCCCEEEE-EeCCC-----eEEEEEcCCc-eEEEEEe-
Q 021925 161 IISAG-EDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLT-GSLDK-----SAKLWDARTL-ELIKTYV- 230 (305)
Q Consensus 161 l~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg-----~i~iwd~~~~-~~~~~~~- 230 (305)
||-.. ..+.|.+-|.....+... ++ +..++.+-+|||||+.|+- .+.++ .|++-|+++. .-+-.+.
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~----~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIE----DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEec----CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 44333 346888888876555443 43 6788999999999999987 55444 4888888753 2223333
Q ss_pred eCCCeeEEEecCCCCcEEE
Q 021925 231 TERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 231 ~~~~v~~~~~~~~~~~l~~ 249 (305)
....|..-...++|..+++
T Consensus 397 e~aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 397 ENAAIPRWRVLENGDTVIV 415 (912)
T ss_pred ccccccceEecCCCCeEEE
Confidence 4556666667777776443
No 497
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=81.15 E-value=37 Score=29.70 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=50.8
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCcE---eeeeccccCC-ccceEEEEEcCCC-CEEEEEeC--CCeEEEEEcCCceEEE
Q 021925 155 GPLNRTIISAGEDAIVRIWDTETGKL---LKESDKETGH-KKTITSLAKAADG-SHFLTGSL--DKSAKLWDARTLELIK 227 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~ 227 (305)
..++..++.+.++|.+....+..... +..+ +. ....+++++-.+| .+|+.|+. |+.+.-+.....+.+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~----g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~ 294 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL----GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLD 294 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE----EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc----CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEE
Confidence 44567888999999999888765432 2222 12 3445566666554 36666665 5666667766667777
Q ss_pred EEeeCCCeeEEEecC
Q 021925 228 TYVTERPVNAVTMSP 242 (305)
Q Consensus 228 ~~~~~~~v~~~~~~~ 242 (305)
.+..-+||.++++.+
T Consensus 295 ~~~N~~Pi~D~~v~~ 309 (504)
T PF10433_consen 295 SLPNWGPIVDFCVVD 309 (504)
T ss_dssp EE----SEEEEEEE-
T ss_pred eccCcCCccceEEec
Confidence 788888999988853
No 498
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.83 E-value=31 Score=28.64 Aligned_cols=194 Identities=19% Similarity=0.112 Sum_probs=97.7
Q ss_pred EEEEeeCCCceEEEEcCCCeeeEEecCC--CcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--CceEE
Q 021925 24 LLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSV 99 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~ 99 (305)
.+..+..+|.|.-.|.++++.+.....- ...+.+-.+..+|+ ++.++.+|.+...|.++++.+....... .....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4455577888888888888865433321 12233333333665 7778888999999998999998888666 11112
Q ss_pred EEecCCceEEEeCCcce-eeee--eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC--CCcEEEEe
Q 021925 100 DFAVGDKLAVITTDPFM-ELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE--DAIVRIWD 174 (305)
Q Consensus 100 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd 174 (305)
....++.......++.. .++. ....|...... . ........++ .....++.+.. ++.+.-.|
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~------~-~~~~~~~~~~------~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPA------P-LSLSIYGSPA------IASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCC------c-cccccccCce------eecceEEEecCCCcceEEEEE
Confidence 22223333333221111 1111 11122221110 0 0011111111 11223444444 56677778
Q ss_pred CCCCcEeeeeccc--cCCccceEEEEEcC----CCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 175 TETGKLLKESDKE--TGHKKTITSLAKAA----DGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 175 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
..+++........ .+.......-.+.. .+.-+..++.++.+...|..+++.+..+..
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 8777776653210 01110000001100 112246777788899999999999988875
No 499
>PLN02193 nitrile-specifier protein
Probab=80.60 E-value=37 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=36.8
Q ss_pred CCCEEEEeeCC----CcEEEEeCCCCcEeeeecc--ccCCccceEEEEEcCCCCEEEEEeCC--------------CeEE
Q 021925 157 LNRTIISAGED----AIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLD--------------KSAK 216 (305)
Q Consensus 157 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~ 216 (305)
+++.++.++.+ ..+.+||+.+.+-...-.. .........++. -++++++.|+.+ ..+.
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEE
Confidence 45666666654 4689999987654332110 001111122222 256677777753 2478
Q ss_pred EEEcCCceEE
Q 021925 217 LWDARTLELI 226 (305)
Q Consensus 217 iwd~~~~~~~ 226 (305)
++|+.+.+-.
T Consensus 406 ~~D~~t~~W~ 415 (470)
T PLN02193 406 ALDTETLQWE 415 (470)
T ss_pred EEEcCcCEEE
Confidence 8888876543
No 500
>PRK10115 protease 2; Provisional
Probab=80.15 E-value=48 Score=30.40 Aligned_cols=199 Identities=9% Similarity=-0.028 Sum_probs=93.4
Q ss_pred EEEEEcCCCCEEEEeeCC------CceEEEEcCCC--eeeEEecCCCcceE-EEEEcCCCcEEEEEeC---CCcEEEEec
Q 021925 14 TYLKYNKDGDLLFSCAKD------HTPTVWFADNG--ERLGTYRGHNGAVW-CCDVSRDSMTLITGSA---DQTAKLWNV 81 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~d------g~v~iw~~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~---dg~v~vwd~ 81 (305)
..++|++|++.|+....+ ..|+.+++.++ +....+........ .+..+.++++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 468999999877665432 36777888877 33344443333333 3333447776654433 457888884
Q ss_pred C--CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-C-CCeeEEEEcCC
Q 021925 82 E--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-Q-GRINRAVWGPL 157 (305)
Q Consensus 82 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~~~~ 157 (305)
. +++..........+..-....++ .+.+.++.... ...+...... ...+. ..+..+ . ..+..+.+. .
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~tn~~~~---~~~l~~~~~~---~~~~~-~~l~~~~~~~~i~~~~~~-~ 325 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLDHYQH-RFYLRSNRHGK---NFGLYRTRVR---DEQQW-EELIPPRENIMLEGFTLF-T 325 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEEeCCC-EEEEEEcCCCC---CceEEEecCC---CcccC-eEEECCCCCCEEEEEEEE-C
Confidence 3 34333333333332222223333 33333321110 1111111111 01122 223333 2 367777777 2
Q ss_pred CCEEEEeeCCCcEEE--EeCCCCcEeeeeccccCCccceEEEEEc--CCCC-EEEEEeC---CCeEEEEEcCCce
Q 021925 158 NRTIISAGEDAIVRI--WDTETGKLLKESDKETGHKKTITSLAKA--ADGS-HFLTGSL---DKSAKLWDARTLE 224 (305)
Q Consensus 158 ~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~~---dg~i~iwd~~~~~ 224 (305)
+..+++...+|.-++ +|...+ .+..+.. .....+..+..+ +++. ++++.++ -+.+..+|..+++
T Consensus 326 ~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 DWLVVEERQRGLTSLRQINRKTR-EVIGIAF--DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEeCCEEEEEEEcCCCC-ceEEecC--CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 344555556665444 454333 3333321 112223333344 3333 4444433 5779999988764
Done!