Query 021925
Match_columns 305
No_of_seqs 618 out of 1802
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 11:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 1.2E-44 4E-49 288.0 33.9 254 4-274 7-265 (304)
2 3ow8_A WD repeat-containing pr 100.0 4.6E-44 1.6E-48 286.4 33.9 242 5-265 75-318 (321)
3 1vyh_C Platelet-activating fac 100.0 5.3E-44 1.8E-48 295.6 34.3 249 4-271 102-372 (410)
4 1vyh_C Platelet-activating fac 100.0 1.2E-43 3.9E-48 293.5 33.5 243 4-265 144-408 (410)
5 3ow8_A WD repeat-containing pr 100.0 3.8E-43 1.3E-47 281.1 33.7 248 5-271 27-282 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 1.9E-42 6.3E-47 279.6 36.3 244 5-268 50-301 (340)
7 3frx_A Guanine nucleotide-bind 100.0 9.9E-42 3.4E-46 272.9 35.7 237 5-256 12-261 (319)
8 2pbi_B Guanine nucleotide-bind 100.0 1.6E-41 5.3E-46 275.5 36.3 240 4-255 58-349 (354)
9 4gqb_B Methylosome protein 50; 100.0 3.9E-42 1.3E-46 277.2 30.9 241 8-268 80-331 (344)
10 2pm7_B Protein transport prote 100.0 1.7E-41 6E-46 268.8 32.7 246 4-266 3-283 (297)
11 2ynn_A Coatomer subunit beta'; 100.0 4.7E-41 1.6E-45 267.2 34.8 239 5-256 50-296 (304)
12 1got_B GT-beta; complex (GTP-b 100.0 5.6E-41 1.9E-45 270.9 35.0 238 5-255 92-335 (340)
13 3iz6_a 40S ribosomal protein R 100.0 1.4E-41 4.7E-46 278.5 29.6 248 5-267 61-374 (380)
14 3zwl_B Eukaryotic translation 100.0 3.1E-40 1E-44 269.2 36.1 251 2-255 24-282 (369)
15 3frx_A Guanine nucleotide-bind 100.0 1.8E-40 6.1E-45 265.6 33.6 240 5-266 60-315 (319)
16 4ery_A WD repeat-containing pr 100.0 2.5E-40 8.7E-45 264.1 34.4 250 5-272 18-272 (312)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-40 1.4E-44 266.3 34.2 244 5-259 10-279 (345)
18 4g56_B MGC81050 protein; prote 100.0 2E-41 6.8E-46 275.1 26.4 249 6-272 90-347 (357)
19 1erj_A Transcriptional repress 100.0 4.3E-40 1.5E-44 270.8 34.3 237 11-266 124-387 (393)
20 3bg1_A Protein SEC13 homolog; 100.0 3E-41 1E-45 269.7 25.3 247 5-267 8-292 (316)
21 2xzm_R RACK1; ribosome, transl 100.0 1.8E-39 6.2E-44 262.4 35.1 234 5-254 16-277 (343)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.8E-40 2.7E-44 264.7 32.0 250 6-271 57-338 (345)
23 2xzm_R RACK1; ribosome, transl 100.0 1.8E-39 6E-44 262.5 31.9 240 5-266 71-338 (343)
24 4aow_A Guanine nucleotide-bind 100.0 7.7E-39 2.6E-43 258.3 34.8 247 5-267 33-336 (340)
25 2hes_X YDR267CP; beta-propelle 100.0 4.9E-39 1.7E-43 258.4 33.3 241 5-258 9-275 (330)
26 1nr0_A Actin interacting prote 100.0 2.3E-39 8E-44 280.7 32.1 246 4-267 53-354 (611)
27 2hes_X YDR267CP; beta-propelle 100.0 5E-39 1.7E-43 258.4 31.4 242 8-266 56-326 (330)
28 4ery_A WD repeat-containing pr 100.0 1.5E-38 5.1E-43 253.8 33.6 237 5-255 60-304 (312)
29 2ymu_A WD-40 repeat protein; u 100.0 1.2E-38 4.1E-43 274.9 34.8 233 4-255 338-572 (577)
30 4gqb_B Methylosome protein 50; 100.0 2.2E-39 7.6E-44 261.2 27.8 245 6-269 26-290 (344)
31 1erj_A Transcriptional repress 100.0 3E-38 1E-42 259.8 33.4 247 8-272 62-345 (393)
32 3f3f_A Nucleoporin SEH1; struc 100.0 5.9E-38 2E-42 253.6 33.2 253 4-269 5-338 (351)
33 3jrp_A Fusion protein of prote 100.0 3.7E-38 1.3E-42 257.9 32.2 246 4-261 5-285 (379)
34 3dwl_C Actin-related protein 2 100.0 3.8E-40 1.3E-44 269.8 20.3 242 3-256 4-275 (377)
35 1nr0_A Actin interacting prote 100.0 4.6E-39 1.6E-43 278.9 27.6 243 7-267 15-269 (611)
36 1k8k_C P40, ARP2/3 complex 41 100.0 6.4E-38 2.2E-42 256.0 32.6 241 3-255 1-266 (372)
37 4g56_B MGC81050 protein; prote 100.0 2.4E-39 8.2E-44 262.8 23.8 247 6-270 38-303 (357)
38 3dm0_A Maltose-binding peripla 100.0 2.6E-38 8.9E-43 278.2 32.2 244 5-269 377-633 (694)
39 4e54_B DNA damage-binding prot 100.0 1.1E-38 3.7E-43 266.0 26.5 212 6-229 115-334 (435)
40 1gxr_A ESG1, transducin-like e 100.0 5.7E-37 1.9E-41 247.0 34.6 233 8-256 95-330 (337)
41 1gxr_A ESG1, transducin-like e 100.0 2.1E-37 7.3E-42 249.4 31.8 244 4-268 45-296 (337)
42 3dm0_A Maltose-binding peripla 100.0 1.7E-37 6E-42 273.0 33.4 241 5-266 425-691 (694)
43 1sq9_A Antiviral protein SKI8; 100.0 1.2E-37 4.1E-42 256.6 27.1 251 5-269 11-323 (397)
44 2ymu_A WD-40 repeat protein; u 100.0 2.1E-36 7.2E-41 260.9 36.0 238 5-266 298-537 (577)
45 3mmy_A MRNA export factor; mRN 100.0 9.2E-37 3.2E-41 248.6 31.1 243 5-255 34-338 (368)
46 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-37 1.6E-41 274.9 31.5 242 4-257 7-253 (814)
47 4a11_B DNA excision repair pro 100.0 1.9E-36 6.5E-41 250.1 32.3 247 4-261 37-363 (408)
48 3ei3_B DNA damage-binding prot 100.0 1.5E-36 5.1E-41 249.1 31.1 244 5-272 68-343 (383)
49 1sq9_A Antiviral protein SKI8; 100.0 1.4E-36 4.9E-41 250.2 31.1 238 4-256 56-388 (397)
50 1r5m_A SIR4-interacting protei 100.0 1.9E-36 6.5E-41 251.3 31.8 240 9-270 107-363 (425)
51 3odt_A Protein DOA1; ubiquitin 100.0 9E-36 3.1E-40 237.6 33.1 243 5-269 13-297 (313)
52 4h5i_A Guanine nucleotide-exch 100.0 2.6E-37 8.7E-42 251.6 23.8 245 4-267 67-342 (365)
53 3zwl_B Eukaryotic translation 100.0 7.4E-36 2.5E-40 243.3 32.4 246 5-270 69-348 (369)
54 3jro_A Fusion protein of prote 100.0 4.2E-37 1.5E-41 272.2 25.9 247 4-267 3-284 (753)
55 4aez_A CDC20, WD repeat-contai 100.0 1.4E-35 4.8E-40 244.7 33.3 241 8-270 132-382 (401)
56 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-36 2.2E-40 278.6 35.0 248 4-267 609-912 (1249)
57 3k26_A Polycomb protein EED; W 100.0 1.4E-37 4.9E-42 253.3 21.0 243 9-266 68-364 (366)
58 3gre_A Serine/threonine-protei 100.0 1.5E-36 5.2E-41 253.3 27.5 249 7-275 60-366 (437)
59 4gga_A P55CDC, cell division c 100.0 1.4E-35 4.9E-40 246.1 33.0 245 5-267 142-394 (420)
60 2pm9_A Protein WEB1, protein t 100.0 1.8E-36 6.1E-41 251.1 26.9 243 3-258 60-332 (416)
61 3dw8_B Serine/threonine-protei 100.0 9.9E-37 3.4E-41 255.0 25.2 241 8-268 26-373 (447)
62 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-35 6.5E-40 241.4 30.8 250 5-268 47-361 (372)
63 2pm9_A Protein WEB1, protein t 100.0 3.4E-37 1.2E-41 255.4 19.2 249 5-268 108-414 (416)
64 3v7d_B Cell division control p 100.0 6.8E-35 2.3E-39 245.1 33.4 245 4-268 115-381 (464)
65 3vl1_A 26S proteasome regulato 100.0 7.6E-36 2.6E-40 247.7 27.2 238 5-256 134-412 (420)
66 3i2n_A WD repeat-containing pr 100.0 8.9E-36 3E-40 241.9 27.0 239 6-256 61-346 (357)
67 2xyi_A Probable histone-bindin 100.0 9.5E-36 3.3E-40 247.8 27.8 248 4-267 122-409 (430)
68 1r5m_A SIR4-interacting protei 100.0 1.5E-35 5.1E-40 246.0 28.5 235 5-255 144-417 (425)
69 3vl1_A 26S proteasome regulato 100.0 6.4E-36 2.2E-40 248.2 25.9 239 13-268 59-322 (420)
70 1yfq_A Cell cycle arrest prote 100.0 2.6E-35 9E-40 237.9 27.7 253 1-268 1-282 (342)
71 3v7d_B Cell division control p 100.0 2.5E-34 8.7E-39 241.6 34.5 243 5-272 157-425 (464)
72 3dwl_C Actin-related protein 2 100.0 2.3E-36 7.8E-41 247.4 20.5 207 5-221 50-280 (377)
73 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-35 1E-39 242.8 27.2 233 5-250 76-331 (402)
74 3ei3_B DNA damage-binding prot 100.0 6.7E-35 2.3E-39 239.3 29.0 242 7-266 115-380 (383)
75 2pbi_B Guanine nucleotide-bind 100.0 1.2E-34 4.1E-39 235.0 29.9 201 5-219 149-354 (354)
76 2j04_B YDR362CP, TAU91; beta p 100.0 9.9E-36 3.4E-40 251.4 24.4 244 5-268 202-517 (524)
77 2j04_B YDR362CP, TAU91; beta p 100.0 2.9E-36 1E-40 254.7 21.1 241 8-267 131-427 (524)
78 4h5i_A Guanine nucleotide-exch 100.0 4.1E-35 1.4E-39 238.6 27.1 208 8-222 131-343 (365)
79 3k26_A Polycomb protein EED; W 100.0 1.1E-35 3.7E-40 242.1 23.2 247 4-268 12-318 (366)
80 1pgu_A Actin interacting prote 100.0 6.9E-35 2.4E-39 253.1 28.8 243 7-268 15-283 (615)
81 3i2n_A WD repeat-containing pr 100.0 4.5E-35 1.6E-39 237.7 25.9 242 5-260 13-288 (357)
82 4aez_A CDC20, WD repeat-contai 100.0 4.4E-34 1.5E-38 235.8 31.1 238 6-260 87-333 (401)
83 3mkq_A Coatomer beta'-subunit; 100.0 3.9E-34 1.3E-38 256.1 33.0 237 5-255 50-295 (814)
84 3dw8_B Serine/threonine-protei 100.0 1E-34 3.4E-39 242.8 26.4 240 5-256 76-440 (447)
85 1yfq_A Cell cycle arrest prote 100.0 5.7E-35 1.9E-39 235.9 23.9 239 3-255 49-315 (342)
86 2oaj_A Protein SNI1; WD40 repe 100.0 2.6E-34 8.8E-39 258.0 27.6 240 4-253 11-297 (902)
87 4gq1_A NUP37; propeller, trans 100.0 1.2E-34 4E-39 238.4 23.1 240 10-257 89-384 (393)
88 4ggc_A P55CDC, cell division c 100.0 6.8E-33 2.3E-37 221.4 32.7 244 5-266 62-313 (318)
89 3gre_A Serine/threonine-protei 100.0 2.4E-34 8.2E-39 240.0 24.2 236 8-255 109-432 (437)
90 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-33 8.6E-38 234.6 30.0 240 9-259 3-335 (450)
91 2pm7_B Protein transport prote 100.0 2.7E-33 9.4E-38 221.7 27.8 211 4-221 47-284 (297)
92 1p22_A F-BOX/WD-repeat protein 100.0 5.9E-33 2E-37 231.4 30.6 237 5-272 168-418 (435)
93 3vu4_A KMHSV2; beta-propeller 100.0 6.5E-33 2.2E-37 224.9 28.7 230 6-259 15-267 (355)
94 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-33 5.2E-38 232.6 24.6 235 11-259 35-295 (402)
95 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-32 7.5E-37 228.0 31.8 235 7-269 130-366 (435)
96 3iz6_a 40S ribosomal protein R 100.0 2E-33 7E-38 230.0 25.0 209 5-224 152-377 (380)
97 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-32 5.1E-37 256.0 33.5 209 5-221 652-912 (1249)
98 1pgu_A Actin interacting prote 100.0 1.6E-32 5.5E-37 238.2 31.0 238 4-256 57-321 (615)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.1E-32 7.2E-37 229.0 29.9 233 7-251 99-373 (450)
100 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-31 7E-36 222.8 35.2 234 5-269 154-392 (445)
101 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-32 3.9E-37 222.6 26.5 214 5-230 52-345 (351)
102 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-31 4.6E-36 223.9 32.6 230 5-255 194-430 (445)
103 2oaj_A Protein SNI1; WD40 repe 100.0 2.6E-33 8.8E-38 251.5 23.2 254 6-266 147-603 (902)
104 3bg1_A Protein SEC13 homolog; 100.0 9.6E-33 3.3E-37 220.5 24.0 206 5-221 52-292 (316)
105 4gga_A P55CDC, cell division c 100.0 2.4E-31 8.3E-36 220.7 31.1 240 13-271 108-356 (420)
106 2j04_A TAU60, YPL007P, hypothe 100.0 3.5E-32 1.2E-36 225.6 24.0 232 8-255 13-290 (588)
107 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-32 1.8E-36 224.4 25.0 225 8-252 83-350 (588)
108 3jrp_A Fusion protein of prote 100.0 1.9E-31 6.6E-36 218.0 27.8 214 5-225 50-290 (379)
109 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-32 6E-37 221.5 20.4 219 18-255 44-284 (343)
110 3bws_A Protein LP49; two-domai 100.0 1.6E-30 5.4E-35 216.6 31.5 239 6-255 165-424 (433)
111 1l0q_A Surface layer protein; 100.0 5.9E-30 2E-34 210.4 33.5 240 6-268 28-275 (391)
112 3lrv_A PRE-mRNA-splicing facto 100.0 2.9E-31 9.9E-36 214.4 25.0 230 10-257 76-327 (343)
113 4ggc_A P55CDC, cell division c 100.0 3.8E-30 1.3E-34 205.5 31.0 242 13-273 28-278 (318)
114 2w18_A PALB2, fancn, partner a 100.0 2.6E-31 8.8E-36 207.6 23.2 209 9-265 110-354 (356)
115 4a11_B DNA excision repair pro 100.0 4.5E-30 1.5E-34 212.0 27.8 218 7-230 96-373 (408)
116 4aow_A Guanine nucleotide-bind 100.0 7.9E-30 2.7E-34 205.6 27.3 213 41-267 27-285 (340)
117 2xyi_A Probable histone-bindin 100.0 8.8E-30 3E-34 211.9 26.8 206 5-223 176-411 (430)
118 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-29 4.2E-34 202.0 25.9 205 5-232 99-306 (313)
119 3vu4_A KMHSV2; beta-propeller 100.0 4.7E-29 1.6E-33 202.2 28.9 232 11-256 59-329 (355)
120 3bws_A Protein LP49; two-domai 100.0 5.3E-29 1.8E-33 207.4 28.4 228 11-253 123-365 (433)
121 3jro_A Fusion protein of prote 100.0 9E-30 3.1E-34 225.4 24.1 211 5-222 48-285 (753)
122 3mmy_A MRNA export factor; mRN 100.0 1.8E-29 6.2E-34 205.4 22.5 210 4-221 80-345 (368)
123 4e54_B DNA damage-binding prot 100.0 4.5E-30 1.5E-34 214.0 19.2 202 45-262 112-326 (435)
124 4gq1_A NUP37; propeller, trans 100.0 9.5E-30 3.2E-34 209.1 20.4 206 6-221 132-388 (393)
125 1l0q_A Surface layer protein; 100.0 6.7E-28 2.3E-32 198.1 30.9 217 23-255 3-225 (391)
126 2w18_A PALB2, fancn, partner a 100.0 1.8E-28 6.3E-33 191.6 20.1 163 6-220 174-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.3E-27 2.5E-31 193.1 29.1 228 3-246 171-411 (415)
128 2ojh_A Uncharacterized protein 100.0 3.8E-27 1.3E-31 185.9 24.0 237 4-254 35-293 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.9E-27 2.7E-31 192.9 24.3 244 5-266 112-385 (415)
130 1ri6_A Putative isomerase YBHE 99.9 9.6E-25 3.3E-29 175.9 28.2 241 7-255 34-300 (343)
131 3u4y_A Uncharacterized protein 99.9 6.3E-25 2.2E-29 176.3 26.7 246 7-267 37-303 (331)
132 2ecf_A Dipeptidyl peptidase IV 99.9 4.5E-25 1.5E-29 195.7 22.4 231 10-255 36-359 (741)
133 3vgz_A Uncharacterized protein 99.9 3.1E-23 1E-27 167.9 31.2 229 10-254 88-335 (353)
134 3hfq_A Uncharacterized protein 99.9 2.6E-23 8.8E-28 168.1 28.2 241 6-255 35-308 (347)
135 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-25 5.6E-30 185.7 15.6 196 9-251 35-259 (434)
136 1nir_A Nitrite reductase; hemo 99.9 4.5E-23 1.5E-27 175.5 30.7 228 13-251 181-439 (543)
137 3vgz_A Uncharacterized protein 99.9 5.4E-23 1.8E-27 166.4 29.6 237 8-255 38-295 (353)
138 1pby_B Quinohemoprotein amine 99.9 9.3E-23 3.2E-27 163.9 28.5 232 23-270 2-312 (337)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-24 6.1E-29 191.3 20.1 226 11-250 17-323 (723)
140 3u4y_A Uncharacterized protein 99.9 3E-22 1E-26 160.7 29.3 230 17-256 4-244 (331)
141 3o4h_A Acylamino-acid-releasin 99.9 1.3E-23 4.6E-28 181.3 21.8 228 9-256 20-269 (582)
142 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-23 6.8E-28 173.2 21.6 163 8-223 90-279 (434)
143 1jmx_B Amine dehydrogenase; ox 99.9 2E-22 6.8E-27 162.8 26.9 240 15-268 4-325 (349)
144 1nir_A Nitrite reductase; hemo 99.9 2.5E-22 8.4E-27 171.0 27.6 230 17-262 144-401 (543)
145 2ojh_A Uncharacterized protein 99.9 1.3E-22 4.6E-27 159.8 24.0 212 27-253 17-237 (297)
146 3scy_A Hypothetical bacterial 99.9 1.7E-21 5.9E-26 158.2 30.8 240 9-254 48-327 (361)
147 2z3z_A Dipeptidyl aminopeptida 99.9 3.2E-23 1.1E-27 182.9 21.6 238 4-252 114-420 (706)
148 2ecf_A Dipeptidyl peptidase IV 99.9 6.9E-23 2.4E-27 181.7 23.5 236 4-251 145-443 (741)
149 1k32_A Tricorn protease; prote 99.9 4.7E-23 1.6E-27 188.9 21.3 231 5-255 240-494 (1045)
150 2z3z_A Dipeptidyl aminopeptida 99.9 3.3E-22 1.1E-26 176.4 24.8 233 11-254 82-377 (706)
151 1ri6_A Putative isomerase YBHE 99.9 2.8E-21 9.7E-26 155.6 25.3 226 24-258 7-257 (343)
152 1xfd_A DIP, dipeptidyl aminope 99.9 5.6E-22 1.9E-26 175.4 21.2 239 5-253 52-380 (723)
153 1k32_A Tricorn protease; prote 99.9 2.5E-21 8.7E-26 177.4 25.3 227 5-253 198-441 (1045)
154 1jof_A Carboxy-CIS,CIS-muconat 99.9 5.5E-21 1.9E-25 155.5 24.7 238 10-255 39-332 (365)
155 1pby_B Quinohemoprotein amine 99.9 2.7E-21 9.3E-26 155.3 21.7 206 11-231 82-319 (337)
156 1z68_A Fibroblast activation p 99.9 2.2E-22 7.7E-27 177.8 14.8 229 14-249 19-328 (719)
157 1jmx_B Amine dehydrogenase; ox 99.9 3.2E-20 1.1E-24 149.8 24.3 214 12-232 44-335 (349)
158 3hfq_A Uncharacterized protein 99.9 2.2E-19 7.4E-24 145.1 28.5 212 7-227 82-324 (347)
159 3o4h_A Acylamino-acid-releasin 99.9 5.3E-20 1.8E-24 158.8 23.4 231 4-256 57-305 (582)
160 3e5z_A Putative gluconolactona 99.9 4.3E-18 1.5E-22 134.4 31.3 238 4-255 21-279 (296)
161 4a5s_A Dipeptidyl peptidase 4 99.9 2.3E-20 7.8E-25 165.3 19.8 236 10-253 16-340 (740)
162 3pe7_A Oligogalacturonate lyas 99.9 5.9E-20 2E-24 150.6 19.7 241 7-254 77-372 (388)
163 3pe7_A Oligogalacturonate lyas 99.9 1.3E-19 4.4E-24 148.5 21.5 236 4-250 24-307 (388)
164 3fvz_A Peptidyl-glycine alpha- 99.8 7.2E-18 2.5E-22 135.1 29.2 233 10-255 23-314 (329)
165 1q7f_A NHL, brain tumor CG1071 99.8 3.3E-17 1.1E-21 128.6 31.1 230 8-255 27-272 (286)
166 2gop_A Trilobed protease; beta 99.8 6.2E-18 2.1E-22 136.5 27.3 221 11-255 59-322 (347)
167 2dg1_A DRP35, lactonase; beta 99.8 5.9E-17 2E-21 130.0 32.0 241 6-254 40-301 (333)
168 2oiz_A Aromatic amine dehydrog 99.8 5.8E-18 2E-22 137.2 26.0 228 6-245 47-360 (361)
169 1z68_A Fibroblast activation p 99.8 3.6E-20 1.2E-24 163.8 13.9 237 12-253 61-376 (719)
170 3scy_A Hypothetical bacterial 99.8 9.6E-18 3.3E-22 136.1 25.9 219 9-241 98-360 (361)
171 3c5m_A Oligogalacturonate lyas 99.8 1.9E-18 6.5E-23 141.9 18.7 228 14-254 84-372 (396)
172 3no2_A Uncharacterized protein 99.8 5.7E-17 2E-21 126.2 25.9 212 21-251 4-231 (276)
173 3azo_A Aminopeptidase; POP fam 99.8 3.8E-18 1.3E-22 149.5 21.4 247 5-255 18-315 (662)
174 3azo_A Aminopeptidase; POP fam 99.8 1.4E-17 4.7E-22 146.0 22.9 232 4-246 61-348 (662)
175 2xdw_A Prolyl endopeptidase; a 99.8 5.7E-17 1.9E-21 143.0 25.3 238 8-250 122-397 (710)
176 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.1E-17 1E-21 133.4 21.8 204 12-223 84-342 (365)
177 3c5m_A Oligogalacturonate lyas 99.8 3.4E-17 1.2E-21 134.4 22.1 223 13-251 38-301 (396)
178 4a5s_A Dipeptidyl peptidase 4 99.8 2E-17 6.9E-22 146.5 19.5 242 5-252 51-382 (740)
179 1rwi_B Serine/threonine-protei 99.8 1.3E-15 4.3E-20 118.5 24.5 228 12-255 25-256 (270)
180 2oiz_A Aromatic amine dehydrog 99.7 1.4E-14 4.7E-19 117.4 28.9 229 21-267 14-333 (361)
181 2bkl_A Prolyl endopeptidase; m 99.7 4.3E-16 1.5E-20 137.1 21.1 230 8-250 118-380 (695)
182 3g4e_A Regucalcin; six bladed 99.7 9.1E-14 3.1E-18 109.6 31.0 238 6-253 8-262 (297)
183 2dg1_A DRP35, lactonase; beta 99.7 5.6E-15 1.9E-19 118.4 23.8 232 10-255 5-255 (333)
184 3dsm_A Uncharacterized protein 99.7 3.1E-14 1.1E-18 113.8 27.9 222 12-251 45-285 (328)
185 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 5.6E-14 1.9E-18 111.6 29.1 240 6-253 13-288 (314)
186 1q7f_A NHL, brain tumor CG1071 99.7 2.1E-14 7.3E-19 112.5 25.8 200 8-224 74-282 (286)
187 3fvz_A Peptidyl-glycine alpha- 99.7 9.3E-15 3.2E-19 117.0 24.2 202 9-222 89-322 (329)
188 2gop_A Trilobed protease; beta 99.7 9.4E-15 3.2E-19 117.8 24.1 218 11-256 15-285 (347)
189 3dr2_A Exported gluconolactona 99.7 2.1E-13 7.2E-18 107.9 29.0 239 4-255 38-299 (305)
190 1xip_A Nucleoporin NUP159; bet 99.7 2.6E-15 8.8E-20 121.0 17.9 169 12-249 39-230 (388)
191 2z2n_A Virginiamycin B lyase; 99.7 6.7E-13 2.3E-17 104.5 31.1 232 4-255 8-247 (299)
192 1qks_A Cytochrome CD1 nitrite 99.7 4.6E-13 1.6E-17 114.0 32.0 230 11-251 197-458 (567)
193 3dsm_A Uncharacterized protein 99.7 1.2E-13 4.3E-18 110.3 26.7 221 10-241 83-320 (328)
194 1yr2_A Prolyl oligopeptidase; 99.7 3.8E-14 1.3E-18 125.6 24.4 233 8-250 160-424 (741)
195 2ghs_A AGR_C_1268P; regucalcin 99.7 1.5E-12 5.2E-17 103.9 30.5 230 12-254 50-293 (326)
196 3hrp_A Uncharacterized protein 99.6 1.2E-12 4.2E-17 107.6 29.8 229 11-255 131-402 (409)
197 1qks_A Cytochrome CD1 nitrite 99.6 1.7E-12 5.8E-17 110.6 31.0 230 20-262 165-420 (567)
198 2z2n_A Virginiamycin B lyase; 99.6 7.7E-12 2.6E-16 98.4 32.2 226 9-254 55-287 (299)
199 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.4E-18 120.7 24.5 229 20-256 81-359 (710)
200 2mad_H Methylamine dehydrogena 99.6 2.1E-12 7.3E-17 104.7 28.6 226 15-255 70-342 (373)
201 2bkl_A Prolyl endopeptidase; m 99.6 2.1E-13 7.1E-18 120.1 22.1 230 19-256 76-342 (695)
202 2qc5_A Streptogramin B lactona 99.6 3.3E-11 1.1E-15 94.8 32.0 231 6-255 15-252 (300)
203 3sjl_D Methylamine dehydrogena 99.6 6.2E-13 2.1E-17 106.8 21.8 225 15-243 82-384 (386)
204 1rwi_B Serine/threonine-protei 99.6 4.9E-13 1.7E-17 103.8 20.8 200 10-225 66-267 (270)
205 3e5z_A Putative gluconolactona 99.6 1.3E-12 4.6E-17 102.8 23.4 202 6-226 64-290 (296)
206 3no2_A Uncharacterized protein 99.6 7.9E-13 2.7E-17 102.8 21.5 177 63-255 4-187 (276)
207 1xip_A Nucleoporin NUP159; bet 99.6 3.9E-13 1.3E-17 108.4 18.2 145 2-210 80-232 (388)
208 2qc5_A Streptogramin B lactona 99.5 1.3E-10 4.4E-15 91.4 31.6 224 8-251 59-290 (300)
209 2qe8_A Uncharacterized protein 99.5 8.7E-12 3E-16 100.3 24.4 240 11-253 17-311 (343)
210 3iuj_A Prolyl endopeptidase; h 99.5 1.1E-12 3.7E-17 115.4 20.4 229 8-251 126-389 (693)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.5E-11 5E-16 97.6 24.4 204 9-222 69-299 (314)
212 1mda_H Methylamine dehydrogena 99.5 1.5E-11 5E-16 98.9 24.0 205 33-243 47-367 (368)
213 3c75_H MADH, methylamine dehyd 99.5 5E-12 1.7E-16 103.3 21.6 239 20-261 82-400 (426)
214 3c75_H MADH, methylamine dehyd 99.5 6E-12 2E-16 102.8 21.7 218 15-243 122-423 (426)
215 1yr2_A Prolyl oligopeptidase; 99.5 5.7E-12 1.9E-16 111.7 23.3 228 19-256 115-386 (741)
216 3sjl_D Methylamine dehydrogena 99.5 3.7E-11 1.3E-15 96.6 22.9 237 16-255 38-355 (386)
217 3g4e_A Regucalcin; six bladed 99.5 1.1E-10 3.9E-15 91.8 24.6 194 9-211 52-261 (297)
218 2hz6_A Endoplasmic reticulum t 99.4 2.7E-13 9.3E-18 110.0 6.7 202 21-245 8-216 (369)
219 1fwx_A Nitrous oxide reductase 99.4 1.5E-10 5E-15 97.1 22.3 224 21-253 100-408 (595)
220 2mad_H Methylamine dehydrogena 99.4 1.3E-09 4.3E-14 88.5 27.2 197 13-229 127-357 (373)
221 2ece_A 462AA long hypothetical 99.4 1.5E-09 5.2E-14 88.0 26.4 225 20-251 93-399 (462)
222 2iwa_A Glutamine cyclotransfer 99.4 1.1E-09 3.9E-14 83.4 24.2 193 13-262 23-236 (266)
223 2ghs_A AGR_C_1268P; regucalcin 99.4 1.7E-09 5.7E-14 86.3 25.6 190 10-211 89-291 (326)
224 3hrp_A Uncharacterized protein 99.3 1.8E-09 6.1E-14 88.8 24.2 192 16-220 176-408 (409)
225 3nol_A Glutamine cyclotransfer 99.3 3.4E-09 1.2E-13 79.9 22.3 186 8-251 38-243 (262)
226 1yiq_A Quinohemoprotein alcoho 99.3 1.1E-09 3.7E-14 96.0 21.9 220 14-252 238-538 (689)
227 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.4E-14 86.1 20.6 201 6-219 81-303 (305)
228 1npe_A Nidogen, entactin; glyc 99.3 4.4E-08 1.5E-12 75.7 28.8 221 11-245 36-263 (267)
229 3nok_A Glutaminyl cyclase; bet 99.3 3.5E-09 1.2E-13 79.8 21.3 179 13-251 57-253 (268)
230 3iuj_A Prolyl endopeptidase; h 99.3 6.3E-10 2.2E-14 97.9 19.5 196 50-254 126-347 (693)
231 2qe8_A Uncharacterized protein 99.2 3E-09 1E-13 85.4 21.6 203 8-218 64-317 (343)
232 1kb0_A Quinohemoprotein alcoho 99.2 1.6E-09 5.4E-14 94.8 20.5 233 22-260 128-504 (677)
233 2ece_A 462AA long hypothetical 99.2 6.1E-09 2.1E-13 84.6 21.7 194 12-210 139-399 (462)
234 3mbr_X Glutamine cyclotransfer 99.2 3.5E-08 1.2E-12 73.7 23.2 197 8-272 16-233 (243)
235 1yiq_A Quinohemoprotein alcoho 99.1 4.1E-08 1.4E-12 86.1 25.3 239 22-272 121-509 (689)
236 1kb0_A Quinohemoprotein alcoho 99.1 6.7E-09 2.3E-13 90.8 19.7 214 31-248 189-535 (677)
237 1fwx_A Nitrous oxide reductase 99.1 4E-08 1.4E-12 82.6 23.2 219 25-255 18-353 (595)
238 3hxj_A Pyrrolo-quinoline quino 99.1 4.2E-08 1.4E-12 78.1 21.7 210 22-257 107-318 (330)
239 2fp8_A Strictosidine synthase; 99.1 5.3E-07 1.8E-11 71.6 27.9 238 4-255 12-305 (322)
240 3q7m_A Lipoprotein YFGL, BAMB; 99.0 4.8E-07 1.6E-11 73.5 24.9 215 22-255 53-288 (376)
241 2hz6_A Endoplasmic reticulum t 99.0 1E-10 3.5E-15 94.9 2.9 172 63-255 8-184 (369)
242 3q7m_A Lipoprotein YFGL, BAMB; 99.0 7.6E-07 2.6E-11 72.3 25.8 210 24-256 145-371 (376)
243 2p4o_A Hypothetical protein; p 99.0 3.2E-06 1.1E-10 66.6 26.6 224 11-254 32-279 (306)
244 3hxj_A Pyrrolo-quinoline quino 98.9 7.1E-08 2.4E-12 76.8 17.0 215 11-255 60-276 (330)
245 1kv9_A Type II quinohemoprotei 98.9 1.2E-07 4.1E-12 82.9 19.5 217 14-252 233-521 (668)
246 1npe_A Nidogen, entactin; glyc 98.9 9E-06 3.1E-10 62.6 28.5 215 23-253 2-227 (267)
247 2ad6_A Methanol dehydrogenase 98.9 3E-06 1E-10 72.7 24.8 231 22-260 115-491 (571)
248 1flg_A Protein (quinoprotein e 98.8 1.2E-06 4.2E-11 75.2 20.8 83 166-252 464-549 (582)
249 1k3i_A Galactose oxidase precu 98.8 9.4E-07 3.2E-11 77.3 20.4 238 15-252 190-530 (656)
250 1mda_H Methylamine dehydrogena 98.8 1.4E-06 4.7E-11 70.1 19.3 181 75-262 47-345 (368)
251 4a2l_A BT_4663, two-component 98.8 6.2E-05 2.1E-09 67.4 31.9 233 10-255 214-473 (795)
252 2xe4_A Oligopeptidase B; hydro 98.8 1.1E-06 3.8E-11 78.0 20.0 197 12-220 175-398 (751)
253 1kv9_A Type II quinohemoprotei 98.8 2.7E-06 9.1E-11 74.4 21.9 232 22-259 117-484 (668)
254 2ad6_A Methanol dehydrogenase 98.7 2.6E-06 8.9E-11 73.0 20.3 214 15-249 239-523 (571)
255 3v65_B Low-density lipoprotein 98.7 4.6E-05 1.6E-09 62.0 26.7 207 11-230 116-326 (386)
256 2iwa_A Glutamine cyclotransfer 98.7 5E-06 1.7E-10 63.4 19.4 159 42-260 9-178 (266)
257 1w6s_A Methanol dehydrogenase 98.7 8.3E-06 2.9E-10 70.0 22.9 225 25-257 124-497 (599)
258 3tc9_A Hypothetical hydrolase; 98.7 5.1E-05 1.7E-09 62.7 26.6 230 12-255 138-421 (430)
259 2fp8_A Strictosidine synthase; 98.7 2.2E-05 7.5E-10 62.3 23.5 199 12-223 81-314 (322)
260 3qqz_A Putative uncharacterize 98.7 4.2E-05 1.4E-09 58.0 24.3 198 47-255 21-245 (255)
261 4a2l_A BT_4663, two-component 98.7 0.00017 5.9E-09 64.6 31.9 226 11-255 263-519 (795)
262 3qqz_A Putative uncharacterize 98.7 5.3E-05 1.8E-09 57.4 29.6 204 6-220 22-251 (255)
263 1w6s_A Methanol dehydrogenase 98.7 2.6E-05 8.8E-10 67.0 24.2 201 22-230 62-350 (599)
264 3v64_C Agrin; beta propeller, 98.6 0.00016 5.6E-09 57.9 27.9 205 12-230 74-283 (349)
265 3nol_A Glutamine cyclotransfer 98.6 1.7E-05 5.7E-10 59.9 18.0 146 43-251 32-188 (262)
266 1flg_A Protein (quinoprotein e 98.6 4.8E-05 1.6E-09 65.3 23.2 230 22-257 117-510 (582)
267 2p9w_A MAL S 1 allergenic prot 98.5 3.4E-05 1.1E-09 60.3 19.8 179 4-223 6-216 (334)
268 2xe4_A Oligopeptidase B; hydro 98.5 1.8E-05 6.1E-10 70.3 20.9 193 54-255 175-390 (751)
269 3nok_A Glutaminyl cyclase; bet 98.5 3.3E-05 1.1E-09 58.3 18.3 146 43-251 44-197 (268)
270 3v9f_A Two-component system se 98.4 0.00027 9.4E-09 63.1 25.8 224 11-255 363-604 (781)
271 3p5b_L Low density lipoprotein 98.4 0.00044 1.5E-08 56.5 30.1 211 9-230 110-328 (400)
272 2ism_A Putative oxidoreductase 98.4 0.00044 1.5E-08 55.4 27.7 231 10-251 30-333 (352)
273 1ijq_A LDL receptor, low-densi 98.4 0.0004 1.4E-08 54.8 28.8 208 11-230 30-246 (316)
274 3v9f_A Two-component system se 98.3 0.0014 4.7E-08 58.6 30.0 230 10-255 257-517 (781)
275 3mbr_X Glutamine cyclotransfer 98.3 0.00011 3.6E-09 55.0 17.2 137 24-211 77-223 (243)
276 2xzh_A Clathrin heavy chain 1; 98.3 0.00065 2.2E-08 52.8 29.9 236 16-262 72-331 (365)
277 4hw6_A Hypothetical protein, I 98.2 0.0014 4.7E-08 54.2 27.1 231 11-254 139-423 (433)
278 3tc9_A Hypothetical hydrolase; 98.2 0.00015 5.1E-09 59.9 18.0 160 54-221 138-300 (430)
279 4hw6_A Hypothetical protein, I 98.2 0.00074 2.5E-08 55.8 21.3 205 9-221 180-432 (433)
280 2xbg_A YCF48-like protein; pho 98.2 0.0014 4.7E-08 52.0 26.4 224 10-255 79-314 (327)
281 3sov_A LRP-6, low-density lipo 98.2 0.0014 4.7E-08 51.7 26.0 206 12-230 36-246 (318)
282 3amr_A 3-phytase; beta-propell 98.2 0.0014 4.8E-08 51.8 25.7 199 21-230 39-272 (355)
283 2p4o_A Hypothetical protein; p 98.2 0.0014 4.8E-08 51.4 25.3 189 11-213 72-279 (306)
284 1bpo_A Protein (clathrin); cla 98.2 0.0018 6.2E-08 52.4 30.1 236 16-262 71-330 (494)
285 3amr_A 3-phytase; beta-propell 98.2 0.0016 5.4E-08 51.5 21.4 176 64-251 40-250 (355)
286 1n7d_A LDL receptor, low-densi 98.1 7E-05 2.4E-09 65.8 14.8 220 11-241 406-634 (699)
287 2xbg_A YCF48-like protein; pho 98.1 0.0019 6.6E-08 51.2 30.0 220 10-252 35-269 (327)
288 3v64_C Agrin; beta propeller, 98.1 0.0024 8.1E-08 51.1 29.9 212 13-240 36-253 (349)
289 3m0c_C LDL receptor, low-densi 98.0 0.0059 2E-07 54.3 28.5 210 10-230 423-640 (791)
290 3sre_A PON1, serum paraoxonase 98.0 0.003 1E-07 50.4 23.9 232 5-247 44-328 (355)
291 3p5b_L Low density lipoprotein 98.0 0.0042 1.4E-07 50.7 23.4 179 66-254 85-267 (400)
292 3s94_A LRP-6, low-density lipo 98.0 0.0075 2.6E-07 52.2 25.1 206 11-229 40-250 (619)
293 2vpj_A Kelch-like protein 12; 97.9 0.0039 1.3E-07 48.6 20.5 223 21-254 14-264 (301)
294 3v65_B Low-density lipoprotein 97.9 0.0057 1.9E-07 49.7 29.3 210 15-240 81-296 (386)
295 2g8s_A Glucose/sorbosone dehyd 97.9 0.0053 1.8E-07 49.2 25.8 241 10-251 17-341 (353)
296 2p9w_A MAL S 1 allergenic prot 97.9 0.0026 9E-08 49.8 17.6 93 167-260 99-212 (334)
297 4a0p_A LRP6, LRP-6, low-densit 97.9 0.011 3.6E-07 51.4 27.4 204 11-229 37-244 (628)
298 3a9g_A Putative uncharacterize 97.8 0.0076 2.6E-07 48.3 27.9 234 10-251 28-330 (354)
299 3kya_A Putative phosphatase; s 97.8 0.012 4E-07 49.2 21.3 207 12-227 187-480 (496)
300 1k3i_A Galactose oxidase precu 97.7 0.013 4.4E-07 51.3 21.5 74 12-85 244-325 (656)
301 3pbp_A Nucleoporin NUP82; beta 97.7 0.015 5.3E-07 47.1 21.0 150 61-218 29-208 (452)
302 3sre_A PON1, serum paraoxonase 97.6 0.016 5.4E-07 46.2 22.4 191 54-254 51-288 (355)
303 1xi4_A Clathrin heavy chain; a 97.6 0.0063 2.2E-07 56.8 18.2 214 17-241 72-309 (1630)
304 1ijq_A LDL receptor, low-densi 97.6 0.018 6E-07 45.3 32.3 196 31-241 9-217 (316)
305 3kya_A Putative phosphatase; s 97.6 0.026 8.8E-07 47.2 29.4 238 12-256 140-467 (496)
306 2xn4_A Kelch-like protein 2; s 97.5 0.02 6.8E-07 44.6 19.7 222 21-254 15-262 (302)
307 3m0c_C LDL receptor, low-densi 97.5 0.047 1.6E-06 48.7 28.7 208 30-253 402-621 (791)
308 1zgk_A Kelch-like ECH-associat 97.5 0.021 7.3E-07 44.6 18.7 221 21-254 24-273 (308)
309 2vpj_A Kelch-like protein 12; 97.4 0.028 9.5E-07 43.7 18.5 191 21-224 62-280 (301)
310 3sov_A LRP-6, low-density lipo 97.3 0.038 1.3E-06 43.5 27.0 197 31-241 12-217 (318)
311 3pbp_A Nucleoporin NUP82; beta 97.2 0.01 3.5E-07 48.0 13.2 71 12-83 67-158 (452)
312 3das_A Putative oxidoreductase 97.2 0.055 1.9E-06 43.0 26.0 241 6-251 27-326 (347)
313 1n7d_A LDL receptor, low-densi 97.1 0.0018 6E-08 57.0 8.9 172 73-254 385-561 (699)
314 3ii7_A Kelch-like protein 7; p 97.1 0.066 2.3E-06 41.7 20.7 219 23-253 13-257 (306)
315 1tl2_A L10, protein (tachylect 97.1 0.0079 2.7E-07 44.0 10.1 66 11-81 41-114 (236)
316 3s94_A LRP-6, low-density lipo 97.0 0.14 4.8E-06 44.4 27.3 201 11-224 349-553 (619)
317 3ii7_A Kelch-like protein 7; p 97.0 0.082 2.8E-06 41.2 19.1 191 21-224 55-274 (306)
318 2xn4_A Kelch-like protein 2; s 96.9 0.11 3.7E-06 40.3 17.2 194 21-225 61-279 (302)
319 3ei3_A DNA damage-binding prot 96.8 0.34 1.2E-05 45.3 31.8 73 10-82 553-635 (1158)
320 2ism_A Putative oxidoreductase 96.8 0.072 2.5E-06 42.6 14.8 103 145-250 29-152 (352)
321 2be1_A Serine/threonine-protei 96.7 0.019 6.4E-07 45.4 10.8 69 23-91 11-84 (339)
322 2uvk_A YJHT; unknown function, 96.7 0.051 1.7E-06 43.4 13.7 55 169-228 286-348 (357)
323 3sbq_A Nitrous-oxide reductase 96.7 0.23 7.9E-06 41.9 19.9 236 25-261 73-406 (638)
324 2g8s_A Glucose/sorbosone dehyd 96.6 0.21 7.2E-06 39.9 21.4 69 147-215 271-347 (353)
325 3sbq_A Nitrous-oxide reductase 96.4 0.35 1.2E-05 40.9 24.8 227 21-251 141-453 (638)
326 4a0p_A LRP6, LRP-6, low-densit 96.4 0.42 1.4E-05 41.5 30.9 203 24-242 8-217 (628)
327 1cru_A Protein (soluble quinop 96.3 0.37 1.3E-05 39.9 20.5 54 10-63 26-87 (454)
328 3ott_A Two-component system se 96.2 0.64 2.2E-05 41.4 27.2 218 11-255 63-300 (758)
329 1zgk_A Kelch-like ECH-associat 96.2 0.33 1.1E-05 37.8 17.4 193 21-225 70-290 (308)
330 1cru_A Protein (soluble quinop 96.1 0.46 1.6E-05 39.4 16.6 111 141-251 21-162 (454)
331 4asc_A Kelch repeat and BTB do 96.1 0.35 1.2E-05 37.7 18.0 196 19-225 43-280 (315)
332 3a9g_A Putative uncharacterize 96.1 0.4 1.4E-05 38.3 24.0 193 11-210 73-330 (354)
333 2zwa_A Leucine carboxyl methyl 96.1 0.69 2.3E-05 40.8 18.9 224 20-252 396-674 (695)
334 2xzh_A Clathrin heavy chain 1; 96.1 0.38 1.3E-05 37.7 24.3 218 31-273 48-295 (365)
335 4asc_A Kelch repeat and BTB do 96.0 0.41 1.4E-05 37.4 22.4 217 24-253 7-253 (315)
336 3das_A Putative oxidoreductase 95.9 0.5 1.7E-05 37.5 16.7 113 139-251 24-158 (347)
337 1tl2_A L10, protein (tachylect 95.8 0.071 2.4E-06 39.1 8.5 98 147-250 41-152 (236)
338 2be1_A Serine/threonine-protei 95.6 0.42 1.4E-05 37.8 13.0 65 29-93 64-140 (339)
339 3s25_A Hypothetical 7-bladed b 95.6 0.61 2.1E-05 36.3 19.4 201 18-250 21-240 (302)
340 2woz_A Kelch repeat and BTB do 95.1 0.89 3E-05 35.4 15.8 67 157-226 206-291 (318)
341 1bpo_A Protein (clathrin); cla 94.9 1.3 4.4E-05 36.4 26.0 217 31-272 47-293 (494)
342 1xi4_A Clathrin heavy chain; a 94.9 1.2 4E-05 42.4 15.3 206 31-256 47-282 (1630)
343 3ei3_A DNA damage-binding prot 94.7 2.8 9.7E-05 39.3 28.9 211 23-252 524-756 (1158)
344 2wg3_C Hedgehog-interacting pr 94.5 1.7 5.9E-05 36.1 15.6 106 147-252 14-158 (463)
345 2wg3_C Hedgehog-interacting pr 94.1 2.2 7.6E-05 35.4 28.1 236 10-251 13-354 (463)
346 2woz_A Kelch repeat and BTB do 93.9 1.8 6E-05 33.7 19.9 216 24-253 18-263 (318)
347 2uvk_A YJHT; unknown function, 93.4 2.4 8.2E-05 33.6 16.9 91 21-113 19-127 (357)
348 3ott_A Two-component system se 92.9 4.8 0.00017 35.8 28.4 227 12-255 192-441 (758)
349 3s25_A Hypothetical 7-bladed b 92.6 2.9 9.9E-05 32.5 18.9 200 17-251 59-280 (302)
350 4gq2_M Nucleoporin NUP120; bet 92.3 6.7 0.00023 36.0 16.2 38 54-91 237-274 (950)
351 1suu_A DNA gyrase subunit A; t 91.8 3.8 0.00013 32.0 15.8 101 157-261 113-229 (312)
352 4hvt_A Ritya.17583.B, post-pro 90.7 8.5 0.00029 34.0 18.8 225 13-249 131-412 (711)
353 3uc1_A DNA gyrase subunit A; D 89.9 6.1 0.00021 31.1 15.0 105 157-263 108-228 (327)
354 4gq2_M Nucleoporin NUP120; bet 89.0 4.4 0.00015 37.2 11.3 39 192-230 236-274 (950)
355 3l6v_A GYRA, DNA gyrase subuni 88.7 8.1 0.00028 31.0 16.7 157 60-222 3-180 (370)
356 1wp5_A Topoisomerase IV; broke 88.6 7.5 0.00026 30.5 15.4 101 158-260 106-222 (323)
357 3qhy_B Beta-lactamase inhibito 88.1 7.4 0.00025 29.8 12.7 68 147-223 180-247 (282)
358 3qhy_B Beta-lactamase inhibito 88.1 7.4 0.00025 29.8 13.6 182 12-222 25-207 (282)
359 3uc1_A DNA gyrase subunit A; D 87.1 9.4 0.00032 30.0 17.1 160 11-176 95-278 (327)
360 1zi0_A DNA gyrase subunit A; b 87.1 9.1 0.00031 29.7 16.4 109 148-258 96-221 (307)
361 3no0_A DNA gyrase subunit A; D 86.2 9.5 0.00033 29.1 16.5 202 12-222 25-246 (276)
362 2zwa_A Leucine carboxyl methyl 85.6 18 0.00062 31.8 18.4 158 62-224 396-579 (695)
363 3q6k_A 43.2 kDa salivary prote 84.9 14 0.00047 29.8 23.5 205 11-251 87-342 (381)
364 4fhn_B Nucleoporin NUP120; pro 84.1 4.3 0.00015 38.1 8.7 38 193-230 239-276 (1139)
365 4fhn_B Nucleoporin NUP120; pro 83.9 5.6 0.00019 37.4 9.4 38 54-91 239-276 (1139)
366 3zwu_A Alkaline phosphatase PH 83.2 5.6 0.00019 34.2 8.3 58 193-250 477-548 (592)
367 4a9v_A PHOX; hydrolase, beta-p 82.1 8.7 0.0003 32.8 8.9 59 192-250 476-548 (592)
368 3f7f_A Nucleoporin NUP120; nuc 81.5 12 0.0004 33.0 9.7 37 54-92 223-259 (729)
369 3f7f_A Nucleoporin NUP120; nuc 79.2 5.5 0.00019 35.0 6.9 37 193-231 223-259 (729)
370 3zwu_A Alkaline phosphatase PH 79.1 9.6 0.00033 32.7 8.4 58 13-70 478-548 (592)
371 4a9v_A PHOX; hydrolase, beta-p 77.9 16 0.00055 31.2 9.1 61 11-71 476-549 (592)
372 3no0_A DNA gyrase subunit A; D 71.7 31 0.0011 26.3 17.2 160 10-176 67-245 (276)
373 1q47_A Semaphorin 3A; beta pro 63.2 43 0.0015 28.1 8.6 67 12-78 405-487 (495)
374 3b7f_A Glycosyl hydrolase, BNR 55.8 76 0.0026 25.3 20.1 221 9-240 113-390 (394)
375 1wp5_A Topoisomerase IV; broke 49.2 92 0.0032 24.3 21.0 203 15-222 43-277 (323)
376 3al9_A Plexin-A2; beta-propell 48.2 56 0.0019 27.8 7.0 68 11-78 400-476 (539)
377 3al9_A Plexin-A2; beta-propell 46.7 88 0.003 26.6 8.0 62 194-255 402-473 (539)
378 3oky_B Putative uncharacterize 45.6 1.1E+02 0.0038 26.1 8.3 78 2-79 393-496 (565)
379 1olz_A Semaphorin 4D; developm 41.1 1.1E+02 0.0037 26.9 7.9 69 148-217 398-477 (663)
380 1q47_A Semaphorin 3A; beta pro 37.9 1.2E+02 0.004 25.5 7.3 69 148-217 405-487 (495)
381 3mez_B Mannose-specific lectin 37.4 77 0.0026 20.0 6.7 16 236-251 59-74 (113)
382 3kci_A Probable E3 ubiquitin-p 35.2 1.7E+02 0.0058 23.3 20.1 60 22-81 62-133 (389)
383 4gz8_A Semaphorin-3A; multi-do 35.0 1.4E+02 0.0048 26.2 7.5 57 160-217 431-495 (667)
384 1suu_A DNA gyrase subunit A; t 34.9 1.6E+02 0.0053 22.8 24.4 193 20-222 6-231 (312)
385 4gz8_A Semaphorin-3A; multi-do 32.7 2.1E+02 0.0072 25.1 8.2 52 205-256 431-493 (667)
386 1zvt_A Topoisomerase IV subuni 30.8 1.7E+02 0.0057 21.9 10.9 147 24-177 4-163 (256)
387 1olz_A Semaphorin 4D; developm 30.0 2.8E+02 0.0097 24.3 10.3 67 12-78 398-477 (663)
388 1zvt_A Topoisomerase IV subuni 29.7 1.7E+02 0.006 21.8 11.9 103 158-261 44-161 (256)
389 3nvq_A Semaphorin-7A; beta-pro 29.2 2.2E+02 0.0077 24.5 7.7 57 160-217 382-444 (590)
390 3ol2_B Plexin-B1; beta-propell 29.0 1.5E+02 0.005 25.2 6.5 67 12-78 388-461 (528)
391 3nvq_A Semaphorin-7A; beta-pro 28.2 2.2E+02 0.0076 24.5 7.5 68 12-79 363-445 (590)
392 1zi0_A DNA gyrase subunit A; b 27.3 2.1E+02 0.0073 22.0 23.7 194 20-222 1-226 (307)
393 3kci_A Probable E3 ubiquitin-p 26.5 2.4E+02 0.0083 22.4 21.1 68 12-81 106-185 (389)
394 3oky_B Putative uncharacterize 25.5 2.8E+02 0.0097 23.7 7.6 71 148-218 404-496 (565)
395 3oky_A Plexin-A2; transmembran 25.3 1.5E+02 0.0052 26.1 6.1 76 2-78 391-475 (681)
396 3s9j_A Member of DUF4221 famil 23.4 2.9E+02 0.0098 22.1 8.6 75 155-230 36-117 (369)
397 3l6v_A GYRA, DNA gyrase subuni 21.6 3.1E+02 0.011 21.9 24.4 195 19-222 4-265 (370)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-44 Score=287.99 Aligned_cols=254 Identities=13% Similarity=0.173 Sum_probs=224.5
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.++.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||+++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI 161 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 161 (305)
++.+..+. +...|.+++|+|++.++++++. ++.+.+|++... ......+.+|...|.+++|+| ++..|
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-----D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEEGGGT-----TEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-----CCeEEEEECCCC-----cchhhhhcccCCcEEEEEECCCCCCEE
Confidence 99988887 8889999999999999988875 667888887532 245567889999999999999 57899
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
++|+.|+.|++||++++.....+.. ++...+..+.|+| ++.+|++++.|++|++||+++++++..+. |...|.++
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~ 234 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence 9999999999999988776655542 4667899999987 77899999999999999999999999988 88899999
Q ss_pred EecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhhh
Q 021925 239 TMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFYN 274 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
+|+|++++|++|+.|+. +++|+.........
T Consensus 235 ~~~p~~~~l~s~s~Dg~-----i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGT-----LKIWNSSTYKVEKT 265 (304)
T ss_dssp EECSSSSEEEEEETTSC-----EEEEETTTCCEEEE
T ss_pred EECCCCCEEEEEcCCCe-----EEEEECCCCceeee
Confidence 99999999999999998 66776654444433
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.6e-44 Score=286.40 Aligned_cols=242 Identities=20% Similarity=0.332 Sum_probs=222.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|.+++|+|++..+++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||++++
T Consensus 75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+....+. +...+.+++|+|+++++++++. ++.+.+|++. .++.+..+.+|...|.+++|+|++++|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~-----dg~i~iwd~~------~~~~~~~~~~h~~~v~~l~~spd~~~l~s 223 (321)
T 3ow8_A 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAI-----DGIINIFDIA------TGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223 (321)
T ss_dssp SEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred ceeEEecCCCceEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCcEEEEEcccCCceeEEEEcCCCCEEEE
Confidence 9888776 6678999999999999998865 5567777763 34677888999999999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 242 (305)
|+.||.|++||+++++....+. +|...|.+++|+|++++|++++.|++|++||+++++++.++. |...|.+++|+|
T Consensus 224 ~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 224 ASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp ECTTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCcceeEEEc---CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence 9999999999999999888887 799999999999999999999999999999999999999887 888999999999
Q ss_pred CCCcEEEeeCCcEEEEEEeehhh
Q 021925 243 LLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
+++.|++++.|+. +++|+
T Consensus 301 ~g~~l~s~~~d~~-----i~vwd 318 (321)
T 3ow8_A 301 NGSKIVSVGDDQE-----IHIYD 318 (321)
T ss_dssp TSSEEEEEETTCC-----EEEEE
T ss_pred CCCEEEEEeCCCe-----EEEEe
Confidence 9999999999987 55554
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-44 Score=295.57 Aligned_cols=249 Identities=22% Similarity=0.290 Sum_probs=226.7
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+++
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
++++..+. +...|.+++|+|++..+++++. ++.+.+|++. .+..+..+.+|...|.++.++|++++++
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-----D~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~g~~l~ 250 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQDGTLIA 250 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEETT------TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEeCCCccEEEEEECCCCCEEE
Confidence 98888776 7889999999999998888765 5677788764 3467788899999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCC
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------------------GSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~ 222 (305)
+|+.|+.|++||+++++....+. +|...|.+++|+|+ +.+|++|+.||.|++||+++
T Consensus 251 s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEcCCCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999999888887 79999999999996 67899999999999999999
Q ss_pred ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
++++..+. |...|.+++|+|++++|++|+.|+. +++|+......
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-----i~vwd~~~~~~ 372 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-----LRVWDYKNKRC 372 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-----EEEECCTTSCC
T ss_pred CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCce
Confidence 99998887 8889999999999999999999997 66776644433
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-43 Score=293.54 Aligned_cols=243 Identities=23% Similarity=0.383 Sum_probs=223.4
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++
T Consensus 144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~ 223 (410)
T 1vyh_C 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223 (410)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC-----
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----- 157 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 157 (305)
++++..+. +...+.++.++|++.++++++. ++.+.+|++. ..+....+.+|...|.+++|+|+
T Consensus 224 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-----D~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSN-----DQTVRVWVVA------TKECKAELREHRHVVECISWAPESSYSS 292 (410)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred CcEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCceeeEecCCCceEEEEEEcCcccccc
Confidence 99988887 7788999999999999988875 5667777764 34567788899999999999996
Q ss_pred ---------------CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 158 ---------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 158 ---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+.+|++|+.|+.|++||+++++++..+. +|...|++++|+|++++|++|+.||.|++||+++
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 6789999999999999999999988887 7999999999999999999999999999999999
Q ss_pred ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
++++..+. |...|++++|+|++++|++|+.|+. +++|+
T Consensus 370 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~-----i~vW~ 408 (410)
T 1vyh_C 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-----VKVWE 408 (410)
T ss_dssp SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE-----EEEEC
T ss_pred CceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEe
Confidence 99998887 8889999999999999999999997 56664
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.8e-43 Score=281.09 Aligned_cols=248 Identities=21% Similarity=0.274 Sum_probs=218.3
Q ss_pred EecccccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCee--eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
.+++|.+.|.+++|+|+ +++|++|+.|++|++|++.+++. ...+.+|...|.+++|++++..+++++.|++|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 35799999999999985 56899999999999999987753 4568899999999999999999999999999999
Q ss_pred EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
||+++++.+..+. +...+.+++|+|++..+++++. .+.+.+|++. ..+....+..|...+.+++|+|+
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~~------~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGVE------SGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEETT------TCSEEEEEECSSSCEEEEEECTT
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEcC------CCceeEEecCCCceEEEEEECCC
Confidence 9999999888887 6678899999999999998875 4556666653 34567778889999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~ 236 (305)
+++|++|+.||.|++||+++++.+..+. +|..+|++++|+|++++|++++.||.|++||+++++.+..+. |...|.
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence 9999999999999999999999988887 799999999999999999999999999999999999988887 888999
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
+++|+|++++|++|+.|+. +++|++.....
T Consensus 253 ~~~~sp~~~~l~s~s~D~~-----v~iwd~~~~~~ 282 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKS-----VKVWDVGTRTC 282 (321)
T ss_dssp EEEECTTSSEEEEEETTSC-----EEEEETTTTEE
T ss_pred EEEECCCCCEEEEEeCCCc-----EEEEeCCCCEE
Confidence 9999999999999999997 66676654433
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-42 Score=279.57 Aligned_cols=244 Identities=18% Similarity=0.299 Sum_probs=216.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+++|.++|++++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++++.|+.+++||+.+.
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C----eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 85 A----QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 85 ~----~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
+ ....+. +...+.++.|++++.++..+. ++.+.+|++. .++....+.+|.+.|.+++|+|+++
T Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~------d~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG------DTTCALWDIE------TGQQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp SBSCEEEEEEECCSSCEEEEEEEETTEEEEEET------TSCEEEEETT------TTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCcceeEEEecCCCccEEEEEECCCCcEEEEEC------CCcEEEEECC------CCcEEEEEcCCCCceEEEEECCCCC
Confidence 4 233333 778899999999988665554 4556677653 3467788899999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC---CCee
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVN 236 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~v~ 236 (305)
++++|+.||.|++||+++++....+. +|...|++++|+|++++|++|+.||+|++||+++++.+..+.+. ..|.
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 99999999999999999999888887 79999999999999999999999999999999999888877643 3799
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+++|+|++++|++|+.++. +++|+...
T Consensus 275 ~~~~s~~g~~l~~g~~d~~-----i~vwd~~~ 301 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFN-----CNVWDALK 301 (340)
T ss_dssp EEEECTTSSEEEEEETTSE-----EEEEETTT
T ss_pred EEEECCCCCEEEEECCCCe-----EEEEEccc
Confidence 9999999999999999987 66666543
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.9e-42 Score=272.88 Aligned_cols=237 Identities=25% Similarity=0.406 Sum_probs=213.5
Q ss_pred EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCC-----CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
.|+||.++|++++|+|++ ++|++|+.|++|++|++.+ +.++..+.+|...|.+++|+|++++|++++.|++|++
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 588999999999999965 8999999999999999864 3456788999999999999999999999999999999
Q ss_pred EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
||+++++.+..+. +...|.+++|+|++..+++++. ++.+.+|++. ......+.+|...+.++.++|.
T Consensus 92 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----D~~i~vwd~~-------~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-----DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-----TSCEEEEETT-------SCEEEEECCCSSCEEEEEECCC
T ss_pred EECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeEEEEeccCCcEEEEEEccC
Confidence 9999999888877 8889999999999999988875 5667777763 3567788899999999999995
Q ss_pred C------CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 158 N------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 158 ~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
. ..+++++.|+.|++||+++.+....+. +|...|++++|+|++++|++++.||.|++||+++++++..+..
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEEC---CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeec---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 4 489999999999999999998888776 7999999999999999999999999999999999999999998
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
..+|.+++|+|++.++++++.++..
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~~i~ 261 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATATGIK 261 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 8899999999999999999887744
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-41 Score=275.47 Aligned_cols=240 Identities=20% Similarity=0.313 Sum_probs=208.9
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-------------------------------------
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG------------------------------------- 46 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~------------------------------------- 46 (305)
..+.+|.++|++++|+|++++|++|+.||+|++||..+++...
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 3588999999999999999999999999999999987654432
Q ss_pred -----------EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecC--CceEEEeC
Q 021925 47 -----------TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG--DKLAVITT 112 (305)
Q Consensus 47 -----------~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~ 112 (305)
.+.+|.+.|.+++|+|+++.|++++.|++|++||+++++.+..+. +...+.+++++|. +..+++++
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 233577788999999999999999999999999999999988887 7888999999874 56777765
Q ss_pred CcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc
Q 021925 113 DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK 192 (305)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 192 (305)
. ++.+.+|++. .++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.++.+..+.. ..+..
T Consensus 218 ~-----Dg~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~ 285 (354)
T 2pbi_B 218 C-----DKKAMVWDMR------SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIF 285 (354)
T ss_dssp T-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCS
T ss_pred C-----CCeEEEEECC------CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCccc
Confidence 4 5677778764 3467788899999999999999999999999999999999999887766642 13445
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.+.+++|+|++++|++|+.|+.|++||+.+++.+..+. |..+|.+++|+|++++|++|+.|+.
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 78999999999999999999999999999999888876 8899999999999999999999987
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.9e-42 Score=277.25 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=198.7
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE----ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT----YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.|...|++++|+|++ .|++|+.||+|+|||+++++.+.. ..+|.+.|.+++|+|++++|++|+.||+|++||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 456789999999986 688999999999999998875543 448999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE--eccCCCeeEEEEcCC-C
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPL-N 158 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-~ 158 (305)
++.+..+. +...|.+++|++++. ++++++. ++.+.+|++.. .+....+ ..+...+.+++|+|+ +
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~-----D~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE-----DNRILLWDTRC------PKPASQIGCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEET-----TSCEEEEETTS------SSCEEECC----CCCEEEEEECSSCT
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeecc-----ccccccccccc------cceeeeeecceeeccceeeeecCCCC
Confidence 99998887 889999999999885 5555543 45677777643 2334433 345667899999995 4
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 237 (305)
++|++|+.||.|++||+++++++..+. +|...|++++|+|++ ++|++|+.|++|++||+++++++....|...|++
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~ 304 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRD 304 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--CCEEEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEE
T ss_pred cceEEeccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEE
Confidence 688999999999999999999988887 899999999999998 5799999999999999999988766559999999
Q ss_pred EEecCCCCc-EEEeeCCcEEEEEEeehhhhhh
Q 021925 238 VTMSPLLDH-VCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 238 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
++|+|+++. |++|+.|+. ++.|.+..
T Consensus 305 v~~sp~~~~llas~s~D~~-----v~~w~v~~ 331 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQ-----VVHHVVPT 331 (344)
T ss_dssp EEECSSSTTEEEEEETTSC-----EEEEECCC
T ss_pred EEEeCCCCeEEEEEcCCCe-----EEEEECCC
Confidence 999999986 557788887 45555433
No 10
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-41 Score=268.80 Aligned_cols=246 Identities=19% Similarity=0.330 Sum_probs=203.5
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC--CeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--GERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw 79 (305)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.++|.+++|+| ++++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 367789999999999999986 48899999999999999
Q ss_pred ecCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 80 NVETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 80 d~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
|+++++ .+..+. +...+.+++|+|+ +..+++++. ++.+.+|++.... ......+.+|...|.+++|
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-----d~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-----DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEEBCSSS----CBCCEEEECCSSCEEEEEE
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC-----CCcEEEEEecCCC----ceeeeeeecccCccceEee
Confidence 998874 444444 7789999999997 677777765 5667777765321 1123567899999999999
Q ss_pred cCC-------------CCEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCccceEEEEEcCCC---CEEEEEeCCCe
Q 021925 155 GPL-------------NRTIISAGEDAIVRIWDTETGK----LLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKS 214 (305)
Q Consensus 155 ~~~-------------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~ 214 (305)
+|+ +++|++|+.|+.|++||+++++ ....+. +|...|.+++|+|++ ++|++++.|++
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec---CCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 997 5799999999999999998765 444554 899999999999984 88999999999
Q ss_pred EEEEEcCCce---EEEEE---eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 215 AKLWDARTLE---LIKTY---VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 215 i~iwd~~~~~---~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
|++||+++.. ....+ .+...|.+++|+|++++|++++.|+. +++|+.
T Consensus 231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~-----v~lw~~ 283 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKE 283 (297)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC-----EEEEEE
T ss_pred EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc-----EEEEEE
Confidence 9999998643 11222 26778999999999999999999987 555544
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.7e-41 Score=267.23 Aligned_cols=239 Identities=19% Similarity=0.279 Sum_probs=207.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||+|++||++++
T Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Cee-EEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC--CCC
Q 021925 85 AQL-FTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNR 159 (305)
Q Consensus 85 ~~~-~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 159 (305)
... ..+. +...+.+++|+| ++..+++++. ++.+.+|++... ........+|...+..+.++| +++
T Consensus 130 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~-----D~~v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (304)
T 2ynn_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQS-----TPNFTLTTGQERGVNYVDYYPLPDKP 199 (304)
T ss_dssp TEEEEEECCCCSCEEEEEECTTCTTEEEEEET-----TSEEEEEETTCS-----SCSEEEECCCTTCEEEEEECCSTTCC
T ss_pred cchhhhhcccCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEECCCC-----CccceeccCCcCcEEEEEEEEcCCCC
Confidence 544 3444 788899999999 5677777654 567778876432 122333456678899999987 678
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
+|++|+.|+.|++||+++++++..+. +|...|.+++|+|++++|++|+.||+|++||+++++.+..+. +...+.++
T Consensus 200 ~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 200 YMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred EEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence 99999999999999999999998887 899999999999999999999999999999999999999988 67889999
Q ss_pred EecCCCC--cEEEeeCCcEE
Q 021925 239 TMSPLLD--HVCIGEPQTIK 256 (305)
Q Consensus 239 ~~~~~~~--~l~~~~~~~~~ 256 (305)
+++|++. ++++|+.++..
T Consensus 277 ~~~~~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 277 ATHPTGRKNYIASGFDNGFT 296 (304)
T ss_dssp EECTTCGGGCEEEEETTEEE
T ss_pred EECCCCCceEEEEecCCceE
Confidence 9999886 47777777654
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.6e-41 Score=270.93 Aligned_cols=238 Identities=20% Similarity=0.294 Sum_probs=212.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
.+..|...|.+++|+|++++|++|+.|+.|++|++.++ +....+.+|.+.|.++.|++++. +++++.|++|++||
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd 170 (340)
T 1got_B 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEE
Confidence 46789999999999999999999999999999999865 35667889999999999998774 89999999999999
Q ss_pred cCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 81 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
+++++.+..+. +...+.+++|+|++.++++++. ++.+.+|++. .......+.+|...|.+++|+|+++
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~-----d~~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~~ 239 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-----DASAKLWDVR------EGMCRQTFTGHESDINAICFFPNGN 239 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TCSEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC-----CCcEEEEECC------CCeeEEEEcCCcCCEEEEEEcCCCC
Confidence 99999888887 7889999999999999888765 5677778764 3467788899999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
+|++|+.||.|++||+++++.+..+.. ..+...|++++|+|++++|++|+.||.|++||+.+++.+..+. |..+|.++
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 318 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence 999999999999999999888776642 1344579999999999999999999999999999999988887 88999999
Q ss_pred EecCCCCcEEEeeCCcE
Q 021925 239 TMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~ 255 (305)
+|+|++++|++|+.|+.
T Consensus 319 ~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 319 GVTDDGMAVATGSWDSF 335 (340)
T ss_dssp EECTTSSCEEEEETTSC
T ss_pred EEcCCCCEEEEEcCCcc
Confidence 99999999999999987
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-41 Score=278.55 Aligned_cols=248 Identities=18% Similarity=0.321 Sum_probs=199.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe----
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN---- 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd---- 80 (305)
.++||.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.+++||
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 5889999999999999999999999999999999999998888888888888888887766655555555555554
Q ss_pred ----------------------------------------------cCCCCeeEEEe------eCCCceEEEEec-CCce
Q 021925 81 ----------------------------------------------VETGAQLFTFN------FDSPARSVDFAV-GDKL 107 (305)
Q Consensus 81 ----------------------------------------------~~~~~~~~~~~------~~~~v~~~~~~~-~~~~ 107 (305)
+++++.+..+. +...+.++.+++ ++.+
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence 44444444431 345567777766 5666
Q ss_pred EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc
Q 021925 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE 187 (305)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 187 (305)
+++++. ++.+.+|++.. ..+.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+++++.+..+...
T Consensus 221 l~sgs~-----D~~v~~wd~~~-----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 221 FISGSC-----DTTVRLWDLRI-----TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp EEEEET-----TSCEEEEETTT-----TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred EEEEEC-----CCeEEEEECCC-----CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 666554 55677777642 23567788999999999999999999999999999999999999888776532
Q ss_pred c----CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE----e-eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925 188 T----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY----V-TERPVNAVTMSPLLDHVCIGEPQTIKFM 258 (305)
Q Consensus 188 ~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 258 (305)
. .+...|++++|+|+|++|++|+.||.|++||+.+++.+..+ . |...|.+++|+|+|++|++|+.|+.
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~--- 367 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN--- 367 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC---
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC---
Confidence 1 12345899999999999999999999999999999888776 2 7889999999999999999999997
Q ss_pred EEeehhhhh
Q 021925 259 LLVYLFVLF 267 (305)
Q Consensus 259 ~~~~~~~~~ 267 (305)
+++|++.
T Consensus 368 --i~iW~~~ 374 (380)
T 3iz6_a 368 --LKIWAFS 374 (380)
T ss_dssp --EEEEECC
T ss_pred --EEEEecC
Confidence 6666543
No 14
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-40 Score=269.23 Aligned_cols=251 Identities=35% Similarity=0.601 Sum_probs=224.6
Q ss_pred CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
+++.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-----CCceEEEEeccCC--CeeEEEE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-----GGESVLILKGPQG--RINRAVW 154 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~i~~~~~ 154 (305)
++++.+..+.+...+.+++|+|++..++++........+.+.+|++....... .......+..|.. .+.+++|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 99999999999999999999999999999876533334677778776543221 1234455666766 9999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC
Q 021925 155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 233 (305)
+|++++|++++.||.|++||+++ .+.+..+. .|...|.+++|+|++++|++++.||.|++||+++++.+..+.+..
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 260 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC 260 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence 99999999999999999999998 67777776 688999999999999999999999999999999999999999999
Q ss_pred CeeEEEecCCCCcEEEeeCCcE
Q 021925 234 PVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
++.+++|+|+++++++++.++.
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-
T ss_pred CceeEEecCCCceEEEeecCCC
Confidence 9999999999999999988774
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-40 Score=265.61 Aligned_cols=240 Identities=18% Similarity=0.280 Sum_probs=206.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|++++|+|+|++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++..
T Consensus 60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~ 139 (319)
T 3frx_A 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139 (319)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CeeEEEe-eCCCceEEEEecCC------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 85 AQLFTFN-FDSPARSVDFAVGD------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
.+..+. +...+.++.+.|.. ..+++++. ++.+.+|++. ..+....+.+|...|.+++|+|+
T Consensus 140 -~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 140 -CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-----DKMVKAWNLN------QFQIEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp -EEEEECCCSSCEEEEEECCC------CCEEEEEET-----TSCEEEEETT------TTEEEEEECCCCSCEEEEEECTT
T ss_pred -eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC-----CCEEEEEECC------cchhheeecCCCCcEEEEEEcCC
Confidence 444444 78889999999854 35666554 5567777764 34566778899999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-------
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------- 230 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 230 (305)
+++|++++.||.|++||+++++.+..+. +...|.+++|+|++.+|++++.+ .+++|++..+..+..+.
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~ 282 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYS 282 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccc
Confidence 9999999999999999999999888886 45789999999999999888754 59999999887776654
Q ss_pred --eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 231 --TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 231 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
+...+.+++|+|+|++|++|+.|+. +++|++
T Consensus 283 ~~~~~~v~~~~~spdg~~l~sg~~Dg~-----i~vWd~ 315 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQTLFAGYTDNV-----IRVWQV 315 (319)
T ss_dssp GGGCCCEEEEEECTTSSEEEEEETTSC-----EEEEEE
T ss_pred cCcCcceeEEEECCCCCEEEEeecCce-----EEEEEE
Confidence 2456889999999999999999998 555554
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-40 Score=264.08 Aligned_cols=250 Identities=23% Similarity=0.374 Sum_probs=217.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|.++|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++++.||.|++||++++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+.+..+. +...+.+++|+|++..+++++. ++.+.+|++. ..+....+..|...|.+++|+|+++++++
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~iwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECC------CCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 9988887 7888999999999999988765 5567777763 34667788899999999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCee--EEEe
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN--AVTM 240 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~--~~~~ 240 (305)
++.||.|++||+++++.+..+.. .+...+..++|+|++++|++++.||.|++||+++++++..+. +..... ...+
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred EeCCCcEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 99999999999999988777642 466789999999999999999999999999999999988887 433322 2233
Q ss_pred -cCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 241 -SPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 241 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
.+++++|++|+.|+. +++|++......
T Consensus 245 ~~~~~~~l~sg~~dg~-----i~vwd~~~~~~~ 272 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNL-----VYIWNLQTKEIV 272 (312)
T ss_dssp ECSSSCEEEECCTTSC-----EEEEETTTCCEE
T ss_pred EeCCCcEEEEECCCCE-----EEEEECCCchhh
Confidence 467888999999987 566665544433
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=266.30 Aligned_cols=244 Identities=20% Similarity=0.321 Sum_probs=204.9
Q ss_pred Eeccccc-ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE---EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG---TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
.+.+|.+ .|.+++|+|+|++||+|+.|++|+|||+++++... ...+|...|.+++|+|++++|++++.|+++++||
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence 4789988 99999999999999999999999999998876432 2367999999999999999999999999999999
Q ss_pred cCCCC--eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 81 VETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 81 ~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
+.++. .+..+. +...|.+++|+|++.++++++. ++.+.+|++... .....+..+.+|...|.+++|+|+
T Consensus 90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~-----D~~v~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEE---DEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECTT---SCEEEEEEECCCCSCEEEEEECSS
T ss_pred ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC-----CCeEEEEECCCC---CCeEEEEEecCcCCCeEEEEECCC
Confidence 98775 344454 7889999999999999998875 567788887532 122456678899999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------------
Q 021925 158 NRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------------ 223 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------ 223 (305)
+++|++++.|+.|++||.++++. ...+. +|...|++++|+|++++|++++.|++|++||....
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~---~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~ 238 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLE---GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEec---CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence 99999999999999999987753 34454 79999999999999999999999999999996321
Q ss_pred ---eEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 224 ---ELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 224 ---~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
+++..+. |...|.+++|+|++..|++++.|+...++
T Consensus 239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 3334443 67789999999999999999999884333
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-41 Score=275.06 Aligned_cols=249 Identities=17% Similarity=0.163 Sum_probs=197.4
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE----EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
..+|...|++++|+|+++ +++++.||+|+|||+.+++... ...+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 457889999999999985 5567889999999998876543 34479999999999999999999999999999999
Q ss_pred CCCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC-
Q 021925 82 ETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN- 158 (305)
Q Consensus 82 ~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 158 (305)
++++.+..+. +...+.+++|++++. .+++++. ++.+.+|++.... .........+...+.+++|+|++
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~-----dg~v~~wd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE-----DGRILLWDTRKPK----PATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET-----TSCEEECCTTSSS----CBCBCCCTTCCSCEEEEEECTTST
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc-----CCceEEEECCCCc----eeeeeeeccccccccchhhhhccc
Confidence 9999988887 788999999999875 4555443 3456666553221 11122234567789999999985
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 237 (305)
.+|++|+.|+.|++||+++++.+..+. +|...|++++|+|++ ++|++|+.||+|+|||+++++++..+.|...|++
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~ 316 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTG 316 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEE
Confidence 688899999999999999999888887 789999999999987 5799999999999999999999988889999999
Q ss_pred EEecC-CCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 238 VTMSP-LLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 238 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
++|+| ++++|++|+.|+. +++|++..+...
T Consensus 317 vafsP~d~~~l~s~s~Dg~-----v~iW~~~~~~~~ 347 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHK-----VLHHHLPSEGRT 347 (357)
T ss_dssp EEECSSSTTEEEEEETTSC-----EEEEECC-----
T ss_pred EEEeCCCCCEEEEEcCCCe-----EEEEECCCCCcc
Confidence 99998 7889999999998 666665444333
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-40 Score=270.81 Aligned_cols=237 Identities=19% Similarity=0.332 Sum_probs=204.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
..|++++|+|+|++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-------eccCCCeeEEEEcCCCCEEE
Q 021925 91 NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-------KGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 91 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~ 162 (305)
.....+.+++++| ++.++++++. ++.+.+|+... +..+..+ .+|...|.+++|+|++++|+
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~-----d~~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSL-----DRAVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEET-----TSCEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcC-----CCcEEEEECCC------CcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 8889999999999 7888887765 45667776532 2233333 57899999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcE------------eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 163 SAGEDAIVRIWDTETGKL------------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+|+.||.|++||+++... ...+. +|...|.+++|+|++.+|++|+.||.|++||+++++++..+.
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe---cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 999999999999986432 23333 788999999999999999999999999999999999998888
Q ss_pred -eCCCeeEEEecC------CCCcEEEeeCCcEEEEEEeehhhh
Q 021925 231 -TERPVNAVTMSP------LLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 231 -~~~~v~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
|...|.+++|+| ++++|++|+.|+. +++|+.
T Consensus 350 ~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~-----i~iW~~ 387 (393)
T 1erj_A 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCK-----ARIWKY 387 (393)
T ss_dssp CCSSCEEEEEECSSCTTCTTCEEEEEEETTSE-----EEEEEE
T ss_pred CCCCCEEEEEecCCcCcCCCCCEEEEECCCCc-----EEECcc
Confidence 888999999876 6889999999998 555543
No 20
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3e-41 Score=269.74 Aligned_cols=247 Identities=20% Similarity=0.269 Sum_probs=196.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd 80 (305)
.+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++ .+..+.+|.++|.+++|+| ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 578999999999999999999999999999999998875 4678899999999999986 488999999999999999
Q ss_pred cCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 81 VETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 81 ~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
+++++ ....+. +...|.+++|+|+ +.++++++. ++.+.+|++.... .......+.+|...+.+++|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~-----D~~i~lwd~~~~~---~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS-----DGAISLLTYTGEG---QWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS-----SSCEEEEEECSSS---CEEECCBTTSSSSCBCCCEEC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC-----CCCEEEEecCCCC---CcceeeeeccccCCcceEEEc
Confidence 98874 444444 7889999999997 678888765 5667777765321 011123446788999999999
Q ss_pred CC-----------------CCEEEEeeCCCcEEEEeCCCCc---EeeeeccccCCccceEEEEEcCCC----CEEEEEeC
Q 021925 156 PL-----------------NRTIISAGEDAIVRIWDTETGK---LLKESDKETGHKKTITSLAKAADG----SHFLTGSL 211 (305)
Q Consensus 156 ~~-----------------~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 211 (305)
|+ +++|++|+.|+.|++||++... ++..+. +|...|.+++|+|++ ++|++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB---CCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc---cCCCceEEEEecCCCCCCCceEEEEcC
Confidence 97 4789999999999999997653 444444 899999999999986 78999999
Q ss_pred CCeEEEEEcCCc---e-EEEEE-eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 212 DKSAKLWDARTL---E-LIKTY-VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 212 dg~i~iwd~~~~---~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
||+|++||+++. + ....+ .+...|.+++|+|++++|++|+.|+. +++|+..
T Consensus 237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~-----v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK-----VTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC-----EEEEEEC
T ss_pred CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe-----EEEEEEC
Confidence 999999998762 1 11222 37889999999999999999999997 5566543
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-39 Score=262.44 Aligned_cols=234 Identities=22% Similarity=0.349 Sum_probs=199.8
Q ss_pred EecccccceEEEEE-----cC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCCcEEEEEe
Q 021925 5 LMKGHERPLTYLKY-----NK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGS 71 (305)
Q Consensus 5 ~l~~h~~~v~~~~~-----~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 71 (305)
.|+||.+.|++++| ++ ++++|++|+.|++|++||+.+. .+...+.+|...|.+++|+|++.++++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 58899999999999 77 9999999999999999998753 45677889999999999999999999999
Q ss_pred CCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---eccCC
Q 021925 72 ADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQG 147 (305)
Q Consensus 72 ~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 147 (305)
.|++|++||+++++.+..+. +...|.+++|+|++..+++++. ++.+.+|++.. ...... ..|..
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----d~~i~~wd~~~-------~~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----EREIKLWNILG-------ECKFSSAEKENHSD 163 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----TSCEEEEESSS-------CEEEECCTTTSCSS
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----CCEEEEEeccC-------CceeeeecccCCCc
Confidence 99999999999999888887 8889999999999999888765 56677777641 122222 26888
Q ss_pred CeeEEEEcCCC----------CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 148 RINRAVWGPLN----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 148 ~i~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
.|.+++|+|++ .++++++.||.|++||. ..+....+. +|...|++++|+|+|++|++|+.||.|++
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~---~h~~~v~~~~~s~~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK---AHESNVNHLSISPNGKYIATGGKDKKLLI 239 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc---CccccceEEEECCCCCEEEEEcCCCeEEE
Confidence 99999999987 78999999999999994 455566665 79999999999999999999999999999
Q ss_pred EEcC-CceEEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 218 WDAR-TLELIKTYVTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 218 wd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
||+. ...+...+.+...|.+++|+|++++++++++++
T Consensus 240 wd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~ 277 (343)
T 2xzm_R 240 WDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG 277 (343)
T ss_dssp EESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSC
T ss_pred EECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCC
Confidence 9994 445556666777899999999999888776555
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=264.69 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=202.3
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+|.+.|++++|+|+|++|++|+.|++|++|+..++ +.+..+.+|.+.|.+++|+|++++|++++.|++|++||+++
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 4789999999999999999999999999999998876 45778899999999999999999999999999999999987
Q ss_pred CCee---EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC
Q 021925 84 GAQL---FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (305)
Q Consensus 84 ~~~~---~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (305)
++.. ..+. +...+.+++|+|++.++++++. ++.+.+|+.... .......+.+|...|.+++|+|+++
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~i~~w~~~~~----~~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASY-----DDTVKLYREEED----DWVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET-----TSCEEEEEEETT----EEEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEecCC----CEEEEEEecCCCCceEEEEECCCCC
Confidence 7543 3333 6788999999999999988875 456677776432 1134567889999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCc---------------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 160 TIISAGEDAIVRIWDTETGK---------------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
+|++++.|+.|++||..... ++..+. ..|...|.+++|+|++..|++++.|+.|++|+.....
T Consensus 208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 99999999999999974321 122222 1378899999999999999999999999999987542
Q ss_pred ----E----EEEE--eeCCCeeEEEecCCCC-cEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 225 ----L----IKTY--VTERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 225 ----~----~~~~--~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
+ .... .|...|++++|+|++. +|++|+.|+. +++|+......
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~-----v~~W~~~~~~~ 338 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE-----VAFWKYQRPEG 338 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC-----EEEEEECC---
T ss_pred CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc-----EEEEEecCCCC
Confidence 1 1111 2778899999999985 8899999987 66666544443
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-39 Score=262.51 Aligned_cols=240 Identities=18% Similarity=0.260 Sum_probs=197.3
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|++++|+|++.++++|+.|++|++||+++++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+...
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CeeEEE---eeCCCceEEEEecCC----------ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 85 AQLFTF---NFDSPARSVDFAVGD----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 85 ~~~~~~---~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
...... .+...+.+++|+|++ .++++++. ++.+.+|+. ..+....+.+|...|.+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~-------~~~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-----DGRLKVWNT-------NFQIRYTFKAHESNVNH 218 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-----TSEEEEEET-------TTEEEEEEECCSSCEEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC-----CCEEEEEcC-------CCceeEEEcCccccceE
Confidence 322222 266789999999986 45666554 456677762 23556778899999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--E
Q 021925 152 AVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--T 228 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 228 (305)
++|+|++++|++|+.||.|++||+.. ......+. +...|.+++|+|++.+++++ .|+.|++||+.+++... .
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEE
Confidence 99999999999999999999999954 33333332 45679999999999877655 58889999998776543 3
Q ss_pred Ee------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 229 YV------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 229 ~~------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
+. +...|.+++|+|+|++|++|+.|+. +++|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~-----v~~w~~ 338 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV-----IRTFSF 338 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE-----EEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce-----EEEEEE
Confidence 22 4567999999999999999999997 555543
No 24
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.7e-39 Score=258.32 Aligned_cols=247 Identities=22% Similarity=0.299 Sum_probs=200.8
Q ss_pred EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe-----eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
+|+||.+.|++++|+|+ +++|+||+.||+|+|||+.+.+ +...+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 48899999999999997 6899999999999999987643 56778899999999999999999999999999999
Q ss_pred EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcc-eeee-------------------------------------
Q 021925 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPF-MELN------------------------------------- 119 (305)
Q Consensus 79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~-~~~~------------------------------------- 119 (305)
|+........... ....+....+.+++..+++++.+. ..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 9998877666655 556667777777777776654311 1110
Q ss_pred --eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925 120 --SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197 (305)
Q Consensus 120 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 197 (305)
..+.+|+ ....+....+.+|.+.|++++|+|++++|++|+.||.|++||+++.+++..+. +...+.++
T Consensus 193 ~d~~i~i~d------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~ 262 (340)
T 4aow_A 193 WDKLVKVWN------LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINAL 262 (340)
T ss_dssp TTSCEEEEE------TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEE
T ss_pred CCCEEEEEE------CCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec----CCceEEee
Confidence 1111111 12345667788899999999999999999999999999999999999988886 56789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
+|+|++. +++++.|+.|++||++++..+..+. +...|++++|+|++++|++|+.|+. +++|++.
T Consensus 263 ~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~-----v~iW~~~ 336 (340)
T 4aow_A 263 CFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL-----VRVWQVT 336 (340)
T ss_dssp EECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC-----EEEEEEE
T ss_pred ecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE-----EEEEeCC
Confidence 9999875 5566679999999999887776553 5678999999999999999999997 6666554
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-39 Score=258.45 Aligned_cols=241 Identities=15% Similarity=0.200 Sum_probs=197.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEe-cC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTY-RG-HNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~-~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
.+.+|.++|.+++|+|+ +||+|+.|++|++||+.++ +....+ .+ |.+.|.+++|+|++++|++++.|++|++||
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 57899999999999987 9999999999999999875 455556 44 999999999999999999999999999999
Q ss_pred cCCC-------CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925 81 VETG-------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 81 ~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (305)
++.. +.+..+. +...|.+++|+|++.++++++. ++.+.+|++.... ...+.+..+.+|...|.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----D~~v~iwd~~~~~--~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----DKSVWIWETDESG--EEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----TSCEEEEECCTTC--CCCEEEEEECCCSSCEEEE
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCEEEEEeccCCC--CCeEEEEEeccCCCceEEE
Confidence 8532 3344444 7889999999999999998875 5677788774221 2235667788999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCC--cEeeeeccccCCccceEEEEEcCC--CCEEEEEeCCCeEEEEEcCCc-----
Q 021925 153 VWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL----- 223 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~----- 223 (305)
+|+|++++|++++.|+.|++||..++ +++..+. +|...|.+++|+|+ +..|++++.|++|++||++++
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN---GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc---CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 99999999999999999999999876 4566665 89999999999998 678999999999999999765
Q ss_pred ---eEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925 224 ---ELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFM 258 (305)
Q Consensus 224 ---~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 258 (305)
.+...+. |...|.+++|++++ .|++++.|+...+
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i 275 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV 275 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE
Confidence 3444443 67889999999765 8889998887433
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-39 Score=280.73 Aligned_cols=246 Identities=15% Similarity=0.172 Sum_probs=205.6
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCC----CcEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAK 77 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~ 77 (305)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++ ....+.+|.++|.+++|+|++++|++++.+ +.|+
T Consensus 53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 4678999999999999999999999999999999987543 456788999999999999999999998875 4688
Q ss_pred EEecCCCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
+||. ++....+. +...|.+++|+|++. .+++++. ++.+.+|+.. ..+....+.+|...|.+++|+
T Consensus 133 ~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~-----D~~v~lwd~~------~~~~~~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 133 LFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSD-----DNTVAIFEGP------PFKFKSTFGEHTKFVHSVRYN 199 (611)
T ss_dssp ETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEET-----TSCEEEEETT------TBEEEEEECCCSSCEEEEEEC
T ss_pred EeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeC-----CCeEEEEECC------CCeEeeeeccccCceEEEEEC
Confidence 8874 44444444 788999999999986 3666654 5566777642 345677889999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCcEeeeecc----ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE--
Q 021925 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-- 229 (305)
Q Consensus 156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 229 (305)
|++++|++++.|+.|++||+.+++.+..+.. ..+|...|.+++|+|++++|++++.|++|++||+++++++..+
T Consensus 200 pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 9999999999999999999999988777632 1168999999999999999999999999999999987765433
Q ss_pred -----------------------------------------e-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 230 -----------------------------------------V-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 230 -----------------------------------------~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
. |...|.+++|+|++++|++++.|+. +++|+..
T Consensus 280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~-----v~~Wd~~ 354 (611)
T 1nr0_A 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH-----INSWDIS 354 (611)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-----EEEEETT
T ss_pred CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc-----EEEEECC
Confidence 1 5678999999999999999999997 5566554
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-39 Score=258.43 Aligned_cols=242 Identities=17% Similarity=0.253 Sum_probs=191.5
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
+|.+.|++++|+|++++|++|+.|++|++||.+. .+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999853 356778899999999999999999999999999999999
Q ss_pred cCCC----CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 81 VETG----AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 81 ~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
++.. +.+..+. +...+.+++|+|++..+++++. ++.+++|+.... ..+.+..+.+|.+.|.+++|+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----D~~i~iW~~~~~----~~~~~~~~~~h~~~v~~~~~~ 206 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY-----DDTVRIWKDYDD----DWECVAVLNGHEGTVWSSDFD 206 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-----TSCEEEEEEETT----EEEEEEEECCCSSCEEEEEEC
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-----CCeEEEEECCCC----CeeEEEEccCCCCcEEEEEec
Confidence 9532 3344444 7788999999999999988875 566777776431 124677889999999999999
Q ss_pred CC--CCEEEEeeCCCcEEEEeCCCC--------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-
Q 021925 156 PL--NRTIISAGEDAIVRIWDTETG--------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE- 224 (305)
Q Consensus 156 ~~--~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 224 (305)
|+ +.+|++++.|+.|++||++.+ .....+. ..|...|.+++|++++ +|++++.||.|++||..+++
T Consensus 207 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~ 283 (330)
T 2hes_X 207 KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP--DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW 283 (330)
T ss_dssp CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC--SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc--cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence 98 678999999999999998754 2233332 1388899999999765 89999999999999998774
Q ss_pred -EEEEE-e-eCC-CeeEEEecC--CCCcEEEeeCCcEEEEEEeehhhh
Q 021925 225 -LIKTY-V-TER-PVNAVTMSP--LLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 225 -~~~~~-~-~~~-~v~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
..... . |.. .|.+++|+| ++++|++|+.|+. +++|++
T Consensus 284 ~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~-----v~~W~~ 326 (330)
T 2hes_X 284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI-----VNFWSL 326 (330)
T ss_dssp EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE-----EEEEEC
T ss_pred EEEeccccccccceEEEEEEecCCCceEEEEecCCCc-----EEEEEe
Confidence 33333 2 555 899999999 7899999999997 566654
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-38 Score=253.83 Aligned_cols=237 Identities=24% Similarity=0.470 Sum_probs=205.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++++
T Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 139 (312)
T 4ery_A 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 162 (305)
+.+..+. +..++.+++|+|++..+++++. ++.+.+|++.. .+....+ ..+...+..++|+|++++|+
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 208 (312)
T 4ery_A 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-----DGLCRIWDTAS------GQCLKTLIDDDNPPVSFVKFSPNGKYIL 208 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTT------CCEEEEECCSSCCCEEEEEECTTSSEEE
T ss_pred EEEEEecCCCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------CceeeEEeccCCCceEEEEECCCCCEEE
Confidence 9888877 6788999999999998888765 45677777642 2333333 45667899999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccc---eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
+++.||.|++||+++++.+..+. +|... +......+++.+|++|+.||.|++||+++++.+..+. |...|.++
T Consensus 209 ~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 285 (312)
T 4ery_A 209 AATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285 (312)
T ss_dssp EEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE
Confidence 99999999999999999888876 44432 3333344678899999999999999999999999887 88899999
Q ss_pred EecCCCCcEEEee--CCcE
Q 021925 239 TMSPLLDHVCIGE--PQTI 255 (305)
Q Consensus 239 ~~~~~~~~l~~~~--~~~~ 255 (305)
+|+|+++.+++++ .|+.
T Consensus 286 ~~~p~~~~l~s~~~~~d~~ 304 (312)
T 4ery_A 286 ACHPTENIIASAALENDKT 304 (312)
T ss_dssp EECSSSSEEEEEECTTTCC
T ss_pred eecCcCCceEEEEccCCcc
Confidence 9999999999986 4554
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-38 Score=274.92 Aligned_cols=233 Identities=27% Similarity=0.471 Sum_probs=208.7
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+.+|...|.+++|+|+|++|++++.||.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~ 415 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 415 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence 357889999999999999999999999999999995 67888899999999999999999999999999999999995 4
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
++.+..+. +...+.+++|+|++..+++++. ++.+.+|+. ..+....+.+|...|.+++|+|++++|+
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----d~~v~~w~~-------~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET-------TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEcC-----CCEEEEEEC-------CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 66666665 7889999999999999988765 445666653 2467788899999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEec
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~ 241 (305)
+++.|+.|++||. +++.++.+. +|...|++++|+|++++|++++.||.|++||. +++++..+. |..+|++++|+
T Consensus 484 s~~~d~~i~iw~~-~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 484 SASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 558 (577)
T ss_dssp EEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEEC
T ss_pred EEeCCCEEEEEcC-CCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEc
Confidence 9999999999995 577787776 79999999999999999999999999999995 678888887 88999999999
Q ss_pred CCCCcEEEeeCCcE
Q 021925 242 PLLDHVCIGEPQTI 255 (305)
Q Consensus 242 ~~~~~l~~~~~~~~ 255 (305)
||+++|++++.|+.
T Consensus 559 ~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 559 PDGQTIASASSDKT 572 (577)
T ss_dssp TTSSCEEEEETTSC
T ss_pred CCCCEEEEEeCCCE
Confidence 99999999999987
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=261.19 Aligned_cols=245 Identities=17% Similarity=0.198 Sum_probs=198.2
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-----------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-----------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 74 (305)
...|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 346788899999999999999887 77888887321 01111222356789999999986 688999999
Q ss_pred cEEEEecCCCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925 75 TAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (305)
+|+|||+++++.+.... |...|.+++|+|+++.+++++. ++.+.+|++. .++.+..+.+|...|
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-----d~~i~iwd~~------~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-----DICIKVWDLA------QQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCE
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEcCcCCce
Confidence 99999999988655443 6789999999999999998875 5667788764 457788899999999
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 150 NRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 150 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
.+++|+|++. +|++++.|+.|++||+++++....+... .+...+++++|+|+ +++|++|+.||.|++||+++++++.
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 9999999984 7899999999999999999888776422 45667999999994 5688999999999999999999999
Q ss_pred EEe-eCCCeeEEEecCCC-CcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 228 TYV-TERPVNAVTMSPLL-DHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 228 ~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
++. |...|++++|+|++ ++|++|+.|+. +++|+....
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-----i~vwd~~~~ 290 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCS-----LAVLDSSLS 290 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTSC-----EEEECTTCC
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCC
Confidence 988 88999999999998 57889999987 666765543
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-38 Score=259.83 Aligned_cols=247 Identities=22% Similarity=0.377 Sum_probs=204.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc------------------ceEEEEEcCCCcEEEE
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------------------AVWCCDVSRDSMTLIT 69 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~l~s 69 (305)
+|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 78999999999998888765532 4999999999999999
Q ss_pred EeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925 70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (305)
Q Consensus 70 ~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (305)
|+.|+.|++||+++++.+..+. +...|.+++|+|++..+++++. ++.+.+|++.. ++....+ .+...
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~~------~~~~~~~-~~~~~ 208 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLRT------GQCSLTL-SIEDG 208 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTT------TEEEEEE-ECSSC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----CCcEEEEECCC------CeeEEEE-EcCCC
Confidence 9999999999999998888777 8889999999999999888765 56677777642 2333333 35678
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeecc----ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925 149 INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (305)
Q Consensus 149 i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 223 (305)
+.+++++| ++++|++|+.||.|++||+++++.+..+.. ..+|...|.+++|+|++++|++|+.||.|++||+++.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999 899999999999999999999988776632 1368899999999999999999999999999999764
Q ss_pred e------------EEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 224 E------------LIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 224 ~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
. +...+. |...|.+++|+|++++|++|+.|+. +++|+.......
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-----v~iwd~~~~~~~ 345 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-----VLFWDKKSGNPL 345 (393)
T ss_dssp ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-----EEEEETTTCCEE
T ss_pred CCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-----EEEEECCCCeEE
Confidence 2 334444 7788999999999999999999997 666665544433
No 32
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.9e-38 Score=253.56 Aligned_cols=253 Identities=18% Similarity=0.200 Sum_probs=208.5
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK 77 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~ 77 (305)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356899999999999999999999999999999999876 46677889999999999999 689999999999999
Q ss_pred EEecCCCC---------eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---
Q 021925 78 LWNVETGA---------QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--- 142 (305)
Q Consensus 78 vwd~~~~~---------~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (305)
+||+++++ .+..+. +...+.+++|+|+ +..+++++. ++.+.+|++...............
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN-----DGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC-----CCcEEEecCCChHHhcccccccccccc
Confidence 99998873 344444 7889999999999 888888765 566778877654332222211111
Q ss_pred ----eccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCC----CEEEEE
Q 021925 143 ----KGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADG----SHFLTG 209 (305)
Q Consensus 143 ----~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 209 (305)
..|...+.+++|+|+ ++++++++.|+.+.+|+...++. +..+. +|...|++++|+|++ ++|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP---GHKSLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC---CCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC---CCCcceeEEEECCCCCCcceEEEEE
Confidence 257788999999997 89999999999998888877664 44444 799999999999998 899999
Q ss_pred eCCCeEEEEEcCCc----------------------------------------------eEEEEEe-eCCCeeEEEecC
Q 021925 210 SLDKSAKLWDARTL----------------------------------------------ELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 210 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~-~~~~v~~~~~~~ 242 (305)
+.||.|++||++++ +++..+. |...|++++|+|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 99999999999874 4555555 778999999999
Q ss_pred CCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 243 LLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
++++|++|+.|+. +++|++...
T Consensus 317 ~~~~l~s~~~dg~-----v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGK-----VRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSC-----EEEEEECTT
T ss_pred CCCEEEEecCCCc-----EEEEecCcC
Confidence 9999999999997 666665543
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-38 Score=257.91 Aligned_cols=246 Identities=19% Similarity=0.328 Sum_probs=207.2
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC--CCeeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~vw 79 (305)
.++.+|.++|++++|+|++++|++|+.||.|++||+. +++.+..+.+|.+.|.+++|+++ +++|++++.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 3578999999999999999999999999999999998 56777889999999999999976 8999999999999999
Q ss_pred ecCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 80 NVETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 80 d~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
|+++++ .+..+. +...+.+++|+|+ +..+++++. ++.+.+|++... .......+..|...|.+++|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~----~~~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKEN----GTTSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCTT----SCCCEEEEECCTTCEEEEEE
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC-----CCcEEEEecCCC----CceeeEEecCCCCceEEEEE
Confidence 999886 444444 7789999999999 888888765 566777777543 12345567889999999999
Q ss_pred cC-------------CCCEEEEeeCCCcEEEEeCCCCcE----eeeeccccCCccceEEEEEcCC---CCEEEEEeCCCe
Q 021925 155 GP-------------LNRTIISAGEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKS 214 (305)
Q Consensus 155 ~~-------------~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~ 214 (305)
+| +++++++++.||.|++||+++++. ...+. +|...|.+++|+|+ +++|++++.||.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe---cccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 99 689999999999999999987653 23343 78999999999999 899999999999
Q ss_pred EEEEEcCCce---EEEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925 215 AKLWDARTLE---LIKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 215 i~iwd~~~~~---~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (305)
|++||+++++ ...... +...|.+++|+|++++|++++.++...++.+
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 9999999863 122221 6778999999999999999999987544443
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-40 Score=269.84 Aligned_cols=242 Identities=14% Similarity=0.154 Sum_probs=197.4
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
|...+.|.++|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 4456678889999999999999999999999999999988 78888999999999999999999999999999999999
Q ss_pred cCCCC---eeEEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEc
Q 021925 81 VETGA---QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWG 155 (305)
Q Consensus 81 ~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 155 (305)
+++++ ....+ .+...+.+++|+|++..+++++. ++.+.+|++.... .......+.. |...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~---~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQEN---DWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-----SSCEEECCC--------CCCCEEECSSCCSCEEEEEEC
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-----CCeEEEEEECCcc---cceeeeEeecccCCCeEEEEEc
Confidence 99877 33333 38889999999999998888765 4455566554321 1123556666 99999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCC------------------CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 156 PLNRTIISAGEDAIVRIWDTET------------------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 156 ~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
|++++|++++.||.|++||++. ++++..+ +|...|++++|+|++++|++++.||.|++
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999999999999999999963 2233333 68899999999999999999999999999
Q ss_pred EEcCCceE----EEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 218 WDARTLEL----IKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 218 wd~~~~~~----~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
||+++++. +..+. +..+|.+++|+|++++|++|+.++..
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI 275 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE
Confidence 99999877 66666 77889999999999999998877765
No 35
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.6e-39 Score=278.88 Aligned_cols=243 Identities=16% Similarity=0.200 Sum_probs=206.3
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
..+++.+.+++|+|+|++||+++ ++.|++|++.+++....+.+|.+.|.+++|+|+|++|++|+.||+|+|||+.+++.
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 34677899999999999999988 56999999999999999999999999999999999999999999999999976543
Q ss_pred --eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC-EEE
Q 021925 87 --LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TII 162 (305)
Q Consensus 87 --~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 162 (305)
...+. +...|.+++|+|+++.+++++..... ...+.+|+. +.....+.+|...|.+++|+|++. .|+
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~-~~~v~~wd~--------~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDT--------GTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTT--------CCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred eeeEeecccCCceEEEEECCCCCEEEEEECCCCc-eeEEEEeeC--------CCCcceecCCCCCceEEEECCCCCeEEE
Confidence 33344 78899999999999998877642110 112333321 233445789999999999999987 699
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE--------eeCCC
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--------VTERP 234 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~ 234 (305)
+|+.|+.|++||..+++....+. +|...|++++|+|+|++|++++.|++|++||+.+++++..+ .|...
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~---~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEeCCCeEEEEECCCCeEeeeec---cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 99999999999999888888776 89999999999999999999999999999999999988877 37789
Q ss_pred eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
|.+++|+|++++|++|+.|+. +++|+..
T Consensus 242 V~~v~~spdg~~l~s~s~D~~-----v~lWd~~ 269 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKT-----IKIWNVA 269 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSE-----EEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCe-----EEEEeCC
Confidence 999999999999999999997 5666554
No 36
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.4e-38 Score=256.02 Aligned_cols=241 Identities=21% Similarity=0.239 Sum_probs=207.9
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
|..+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 34567799999999999999999999999999999999987 8889999999999999999999999999999999999
Q ss_pred cCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCc-eEEEEeccCCCeeEEEEcC
Q 021925 81 VETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 81 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 156 (305)
+++++...... +...+.+++|+|++..+++++. ++.+.+|++..... .. .......|...|.+++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcC
Confidence 98887555543 7788999999999999988875 45667777754321 11 2233357889999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCC------------------CCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925 157 LNRTIISAGEDAIVRIWDTE------------------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 218 (305)
++++|++++.||.|++||++ .++.+..+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 99999999999999999954 567777776 788999999999999999999999999999
Q ss_pred EcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 219 DARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 219 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
|+++++++..+. +..+|.+++|+|+++++++| .++.
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~ 266 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF 266 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe
Confidence 999999999888 77799999999999988888 5655
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-39 Score=262.82 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=196.4
Q ss_pred ecccccceEEEEEcCCCCEEEEeeC------CCceEEEEcCCCeee----EEecCCCcceEEEEEcCCCcEEEEEeCCCc
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAK------DHTPTVWFADNGERL----GTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~ 75 (305)
...|++.|++++|+|||++||+|+. |+.|++|+..++... ....+|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4579999999999999999999997 678999988776543 33446889999999999985 556788999
Q ss_pred EEEEecCCCCeeEE-----EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925 76 AKLWNVETGAQLFT-----FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (305)
Q Consensus 76 v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (305)
|++||+.+++.... ..+...|.+++|+|+++.+++++. ++.+.+|++. ..+.+..+.+|...|+
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----dg~v~iwd~~------~~~~~~~~~~h~~~v~ 185 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----DFSVKVWDLS------QKAVLKSYNAHSSEVN 185 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCEE
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEcCCCCCEE
Confidence 99999988765432 236789999999999999988765 5567777753 4567888899999999
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925 151 RAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKT 228 (305)
Q Consensus 151 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~ 228 (305)
+++|+|+++ ++++++.||.|++||++++++...+.. ..+...+++++|+|+ +.+|++|+.|+.|++||+++++++..
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred EEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 999999885 789999999999999999887766542 246778999999997 46789999999999999999999988
Q ss_pred Ee-eCCCeeEEEecCCC-CcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925 229 YV-TERPVNAVTMSPLL-DHVCIGEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 229 ~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
+. +..+|++++|+|++ ++|++|+.|+. +++|+.....
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~-----i~iwd~~~~~ 303 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCT-----VAVLDADFSE 303 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSC-----EEEECTTSCE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCE-----EEEEECCCCc
Confidence 87 88899999999997 57888998887 6667665443
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-38 Score=278.24 Aligned_cols=244 Identities=22% Similarity=0.345 Sum_probs=210.9
Q ss_pred EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCC-----eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
.+++|.+.|++++|+|+ +++|++|+.||+|++|++.+. .....+.+|...|.+++|+|++++|++|+.||+|++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 47899999999999986 479999999999999998753 455678899999999999999999999999999999
Q ss_pred EecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE----eccCCCeeEEE
Q 021925 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----KGPQGRINRAV 153 (305)
Q Consensus 79 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~ 153 (305)
||+.+++....+. |...|.+++|+|++..+++++. ++.+.+|+... .....+ .+|...|.+++
T Consensus 457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----D~~i~iwd~~~-------~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-----DRTIKLWNTLG-------ECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSCEEEECTTS-------CEEEEECSSTTSCSSCEEEEE
T ss_pred EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC-----CCEEEEEECCC-------CcceeeccCCCCCCCcEEEEE
Confidence 9999998888776 8889999999999999888765 45666665421 111122 46888999999
Q ss_pred EcCCC--CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 154 WGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 154 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
|+|++ ..+++++.|+.|++||+++++....+. +|...|++++|+|++++|++|+.||.|++||+++++++..+.+
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 601 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA---GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence 99987 689999999999999999999888887 7999999999999999999999999999999999999988888
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
...+.+++|+|++.++++++.++ +++|++...
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~~~~------i~iwd~~~~ 633 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAATEHG------IKIWDLESK 633 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEETTE------EEEEETTTT
T ss_pred CCcEEEEEEcCCCcEEEEEcCCC------EEEEECCCC
Confidence 88999999999998888877665 555655443
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-38 Score=265.99 Aligned_cols=212 Identities=13% Similarity=0.174 Sum_probs=176.0
Q ss_pred ecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEec
Q 021925 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 6 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~ 81 (305)
..+|...|++++|+| ++++||+|+.||.|+|||+.+++.. ..+.+|.+.|++++|+| ++++|++++.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 467899999999999 5679999999999999999876543 44568999999999998 7889999999999999999
Q ss_pred CCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 82 ETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 82 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
+++....... ....+.+++|+|++.++++++. ++.+.+|++. ++.+..+.+|...|.+++|+|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~-------~~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMD-------GKELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESS-------SCBCCCSBCCSSCEEEEEECTTC
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccC-------cceeEEEecccceEEeeeecCCC
Confidence 8664433333 3345789999999999998876 5567777753 23455678899999999999998
Q ss_pred C-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925 159 R-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (305)
Q Consensus 159 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 229 (305)
+ ++++|+.|+.|++||+++.+....+....+|...|++++|+|+|++|++++.||.|++||+++++....+
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 6 7889999999999999987766665544579999999999999999999999999999999876554433
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.7e-37 Score=246.96 Aligned_cols=233 Identities=14% Similarity=0.135 Sum_probs=206.4
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
+|...|++++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 799999999999999999999999999999999877 667788899999999999999999999999999999999998
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.+..+. +...+.+++|+|++..+++++. ++.+.+|++.. .+.... ..+...+.+++|+|++++++++
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------~~~~~~-~~~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGL-----DNTVRSWDLRE------GRQLQQ-HDFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTT------TEEEEE-EECSSCEEEEEECTTSSEEEEE
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEec-----CCcEEEEECCC------CceEee-ecCCCceEEEEECCCCCEEEEE
Confidence 888887 7889999999999998888765 45666776642 233333 3578889999999999999999
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCC
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 244 (305)
+.|+.|++||+++++... +. .|...+.+++|+|++++|++++.||.|++||+++++.+....+..++.+++|+|++
T Consensus 243 ~~~~~i~~~~~~~~~~~~-~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDKYQ-LH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD 318 (337)
T ss_dssp ETTSCEEEEETTSSCEEE-EC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred cCCCcEEEEECCCCCeEE-Ec---CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC
Confidence 999999999999887643 33 68899999999999999999999999999999999998877789999999999999
Q ss_pred CcEEEeeCCcEE
Q 021925 245 DHVCIGEPQTIK 256 (305)
Q Consensus 245 ~~l~~~~~~~~~ 256 (305)
++|++++.++..
T Consensus 319 ~~l~~~~~dg~i 330 (337)
T 1gxr_A 319 KYIVTGSGDKKA 330 (337)
T ss_dssp CEEEEEETTSCE
T ss_pred CEEEEecCCCeE
Confidence 999999999873
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-37 Score=249.42 Aligned_cols=244 Identities=14% Similarity=0.193 Sum_probs=209.1
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee---eEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~---~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
+...+|.+.|++++|+|++++|++++ ||.|++||+.+++. ...+. +|...|.+++|+|++++|++++.||.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 44568999999999999999999998 99999999987653 23333 78999999999999999999999999999
Q ss_pred EecCCCC--eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 79 WNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 79 wd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
||+++++ ....+. +...+.+++|+|++..+++++. ++.+.+|++. ..+....+..|...+.+++|+
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~~~d~~------~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-----DGNIAVWDLH------NQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCEEEEEEC
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-----CCcEEEEeCC------CCceeeeeecccCceEEEEEC
Confidence 9999887 333343 6778999999999998888765 4556667653 346677888899999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCe
Q 021925 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV 235 (305)
Q Consensus 156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v 235 (305)
|+++++++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.||.|++||+++++......+..+|
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v 268 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccce
Confidence 999999999999999999999998888774 7788999999999999999999999999999998876655588999
Q ss_pred eEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 236 NAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
.+++|+|++++|++++.++. +++|+...
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~-----i~~~~~~~ 296 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNL-----LNAWRTPY 296 (337)
T ss_dssp EEEEECTTSSEEEEEETTSE-----EEEEETTT
T ss_pred eEEEECCCCCEEEEecCCCc-----EEEEECCC
Confidence 99999999999999999987 55565543
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-37 Score=273.00 Aligned_cols=241 Identities=18% Similarity=0.293 Sum_probs=204.9
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||....
T Consensus 425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CeeEEEe----eCCCceEEEEecCC--ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 85 AQLFTFN----FDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 85 ~~~~~~~----~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
....... +...+.+++|+|++ ..+++++. ++.+.+|++. ..+....+.+|.+.|++++|+|++
T Consensus 505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----d~~v~vwd~~------~~~~~~~~~~h~~~v~~v~~spdg 573 (694)
T 3dm0_A 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-----DKTVKVWNLS------NCKLRSTLAGHTGYVSTVAVSPDG 573 (694)
T ss_dssp EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTS
T ss_pred cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC-----CCeEEEEECC------CCcEEEEEcCCCCCEEEEEEeCCC
Confidence 3333221 56679999999986 35555543 5667777764 346677889999999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC------
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------ 232 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------ 232 (305)
++|++|+.||.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+++++.+..+...
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE 648 (694)
T ss_dssp SEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc
Confidence 999999999999999999999888775 567899999999998777765 667999999999888766411
Q ss_pred --------------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 233 --------------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 233 --------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
..+++++|+|+|++|++|+.|+. +++|++
T Consensus 649 ~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~-----i~iW~i 691 (694)
T 3dm0_A 649 KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV-----IRVWGI 691 (694)
T ss_dssp ------------CCCCEEEEEECTTSSEEEEEETTSE-----EEEEEC
T ss_pred cccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe-----EEEEec
Confidence 12688999999999999999998 555543
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-37 Score=256.65 Aligned_cols=251 Identities=12% Similarity=0.084 Sum_probs=210.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------eeEEecCCCcceEEEEEcCC----C---cEEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRD----S---MTLITGS 71 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~i~~~~~----~---~~l~s~~ 71 (305)
.+.+|.++|++++|+| ++|++|+.||.|++|++.+++ .+..+.+|...|.+++|+|+ + ++|++++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 5789999999999999 799999999999999999887 78888899999999999999 9 9999999
Q ss_pred CCCcEEEEecCCCCe-----eEEEe-e-----CCCceEEEEe----cCCce-EEEeCCcceeeeeeEEEEEeec------
Q 021925 72 ADQTAKLWNVETGAQ-----LFTFN-F-----DSPARSVDFA----VGDKL-AVITTDPFMELNSAIHVKRIAR------ 129 (305)
Q Consensus 72 ~dg~v~vwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~------ 129 (305)
.||.|++||+++++. ...+. + ...+.+++|+ |++.. +++++. ++.+.+|++..
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-----KGTTYIWKFHPFADESN 163 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-----TSCEEEEEEESSSSHHH
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-----CCcEEEEeCCccccccc
Confidence 999999999998886 66666 4 4899999999 99998 777754 56777888765
Q ss_pred ccCCCCCceEEEE-------eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCC---ccceEEEEE
Q 021925 130 DPADQGGESVLIL-------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSLAK 199 (305)
Q Consensus 130 ~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~ 199 (305)
..... ..+...+ ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+....+| ...|.+++|
T Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 164 SLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred cceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 22111 1222244 4588999999999999 9999999999999999999988888721127 899999999
Q ss_pred cCCCCEEEEEeCC---CeEEEEEcCCceEEEEEe--------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 200 AADGSHFLTGSLD---KSAKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 200 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
+|++++|++++.| |.|++||+++++++..+. +...|.+++|+|++++|++++.++. ++
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~ 316 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-----LR 316 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-----EE
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-----EE
Confidence 9999999999999 999999999999888886 6788999999999999999999987 55
Q ss_pred hhhhhhh
Q 021925 263 LFVLFLD 269 (305)
Q Consensus 263 ~~~~~~~ 269 (305)
+|++...
T Consensus 317 iwd~~~~ 323 (397)
T 1sq9_A 317 FWDVKTK 323 (397)
T ss_dssp EEETTTT
T ss_pred EEEcCCC
Confidence 5555433
No 44
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-36 Score=260.93 Aligned_cols=238 Identities=28% Similarity=0.497 Sum_probs=209.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|.+.|.+++|+|+++.|++++.||.|++||.. ++.+..+.+|...|.+++|+|++++|++++.||.|++||. ++
T Consensus 298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~ 375 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG 375 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TC
T ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CC
Confidence 467999999999999999999999999999999975 4556778899999999999999999999999999999995 56
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+.+..+. +...+.+++|+|+++.+++++. ++.+.+|+. ..+....+.+|...|++++|+|++++|++
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~-------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 443 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECT-------TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeC-------CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 6666666 7889999999999999988765 344555542 34677888999999999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 242 (305)
++.|+.|++||. +++.+..+. +|...|++++|+|++++|++++.|+.|++||. +++++..+. |..+|++++|+|
T Consensus 444 ~~~d~~v~~w~~-~~~~~~~~~---~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 444 ASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp EETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred EcCCCEEEEEEC-CCCEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC
Confidence 999999999996 466666666 79999999999999999999999999999995 678888887 888999999999
Q ss_pred CCCcEEEeeCCcEEEEEEeehhhh
Q 021925 243 LLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
++++|++++.|+. +++|+.
T Consensus 519 dg~~l~s~~~dg~-----v~lwd~ 537 (577)
T 2ymu_A 519 DGQTIASASDDKT-----VKLWNR 537 (577)
T ss_dssp TSSCEEEEETTSE-----EEEECT
T ss_pred CCCEEEEEECcCE-----EEEEeC
Confidence 9999999999987 666764
No 45
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.2e-37 Score=248.55 Aligned_cols=243 Identities=14% Similarity=0.170 Sum_probs=194.9
Q ss_pred EecccccceEEEEEcCC---CCEEEEeeCCCceEEEEcCC-Ceee-EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925 5 LMKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw 79 (305)
.+.+|.+.|++++|+|+ |++|++|+.||.|++||+++ ++.+ ..+.+|.+.|.+++|+|++++|++++.||.|++|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 46899999999999998 69999999999999999987 5544 7788899999999999999999999999999999
Q ss_pred ecCCCCeeEEEeeCCCceEEEE--ecCCceEEEeCCcceeeeeeEEEEEeecccCCC-----------------------
Q 021925 80 NVETGAQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHVKRIARDPADQ----------------------- 134 (305)
Q Consensus 80 d~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 134 (305)
|+++++.+....+...+.+++| ++++..+++++. ++.+.+|++.......
T Consensus 114 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 3mmy_A 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW-----DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA 188 (368)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEET-----TSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred EcCCCCceeeccccCceEEEEEEeCCCCCEEEEccC-----CCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence 9999998888889999999999 888888887764 3344455443211000
Q ss_pred -----------CCce-EEEEeccCCCeeEEEEcCCCCE----EEEeeCCCcEEEEeCCCC---cEeeeeccccCCcc---
Q 021925 135 -----------GGES-VLILKGPQGRINRAVWGPLNRT----IISAGEDAIVRIWDTETG---KLLKESDKETGHKK--- 192 (305)
Q Consensus 135 -----------~~~~-~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~--- 192 (305)
.... ......+.....++.+.++... +++++.||.|++||++.. .....+. .|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~~~~~ 265 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK---CHRSNGT 265 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE---CSEEC--
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee---eeecccc
Confidence 0000 0001112234555666555544 999999999999999987 3344444 4544
Q ss_pred ---------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 193 ---------TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 193 ---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.|++++|+|++++|++++.||.|++||+++++++..+. +..+|.+++|+|++++|++|+.++.
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 79999999999999999999999999999999999887 7889999999999999999998873
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-37 Score=274.94 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=218.5
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+..+.+|.++|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCCEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI 161 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 161 (305)
++.+..+. +...+.+++|+|++..+++++. ++.+.+|++... ......+.+|...|.+++|+| +++.+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGGT-----SEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred CcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCCC-----ceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 99988888 8889999999999998888765 556777776432 356677889999999999999 88999
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
++++.||.|++||+.+++....+.. .+...+.+++|+| ++.+|++++.||.|++||+++++++..+. +...|.++
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 9999999999999998877766652 3448899999999 99999999999999999999999998888 78899999
Q ss_pred EecCCCCcEEEeeCCcEEE
Q 021925 239 TMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~ 257 (305)
+|+|+++++++++.++...
T Consensus 235 ~~~~~~~~l~~~~~dg~v~ 253 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLK 253 (814)
T ss_dssp EECSSSSEEEEEETTSCEE
T ss_pred EEcCCCCEEEEEeCCCeEE
Confidence 9999999999999988733
No 47
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=250.11 Aligned_cols=247 Identities=21% Similarity=0.326 Sum_probs=206.2
Q ss_pred eEecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEec-------------CCCcceEEEEEcC-CCcEEE
Q 021925 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR-------------GHNGAVWCCDVSR-DSMTLI 68 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-------------~~~~~v~~i~~~~-~~~~l~ 68 (305)
..+.+|.++|++++|+| ++++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 35788999999999999 99999999999999999999876554443 5999999999999 778999
Q ss_pred EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCc---eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK---LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
+++.||.|++||+++++....+.....+.++.+.+.+. .++++.. .+.+.+|++. ..+....+..|
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~d~~------~~~~~~~~~~~ 185 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR-----GPKVQLCDLK------SGSCSHILQGH 185 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEES-----SSSEEEEESS------SSCCCEEECCC
T ss_pred EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcC-----CCeEEEEeCC------CcceeeeecCC
Confidence 99999999999999999999999999999999998543 6776654 4567777764 23566778899
Q ss_pred CCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCc-Eeeeec------------cccCCccceEEEEEcCCCCEEEEEeC
Q 021925 146 QGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGK-LLKESD------------KETGHKKTITSLAKAADGSHFLTGSL 211 (305)
Q Consensus 146 ~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~ 211 (305)
...|.+++|+|+++ .+++++.||.|++||++++. .+..+. ....|...|.+++|+|++++|++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 99999999999998 58899999999999998765 222221 11368889999999999999999999
Q ss_pred CCeEEEEEcCCce-----------------------------------------------EEEEEe-eCCCeeEEEecCC
Q 021925 212 DKSAKLWDARTLE-----------------------------------------------LIKTYV-TERPVNAVTMSPL 243 (305)
Q Consensus 212 dg~i~iwd~~~~~-----------------------------------------------~~~~~~-~~~~v~~~~~~~~ 243 (305)
||.|++||+++++ ++..+. |..+|.+++|+|+
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 9999999987643 344444 7788999999999
Q ss_pred CCcEEEeeCCcEEEEEEe
Q 021925 244 LDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~ 261 (305)
+++|++|+.|+...++.+
T Consensus 346 ~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 346 FQELYSGSRDCNILAWVP 363 (408)
T ss_dssp TTEEEEEETTSCEEEEEE
T ss_pred CCEEEEECCCCeEEEEeC
Confidence 999999999998444333
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-36 Score=249.07 Aligned_cols=244 Identities=14% Similarity=0.191 Sum_probs=202.3
Q ss_pred EecccccceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcC-CCcEEEEEeCCCcEEEEe
Q 021925 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLWN 80 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd 80 (305)
.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|.+.|.+++|+| ++++|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 478999999999999999 999999999999999999888777665 6999999999999 779999999999999999
Q ss_pred cCCCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 81 VETGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 81 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
+++ +.+..+. +...+.+++|+|++..+++++. ++.+.+|++. .+.+..+.+|...|.+++|+|
T Consensus 148 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~-------~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 148 FSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGLD-------GHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp TTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEETT-------SCEEEEEECSSSCEEEEEECS
T ss_pred CCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEECC-------CCEEEEeccCCCcEEEEEECC
Confidence 986 4444444 2367999999999999998875 5667777762 457888899999999999999
Q ss_pred CCC-EEEEeeCCCcEEEEeCCC----CcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 157 LNR-TIISAGEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 157 ~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+++ ++++++.|+.|++||+++ +..+..+ +|...|++++|+| ++++|++++.|+.|++||+++++....+.
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 998 999999999999999997 5555555 4889999999999 99999999999999999999887765554
Q ss_pred -eC-----------------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 231 -TE-----------------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 231 -~~-----------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
+. ..+..++|+|++++ +|+.++. +++|+.......
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-----i~iwd~~~~~~~ 343 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-----IDIYDANSGGLV 343 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-----EEEEETTTCCEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-----EEEEecCCCcee
Confidence 21 23445677777776 6667776 666665544443
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-36 Score=250.21 Aligned_cols=238 Identities=15% Similarity=0.186 Sum_probs=208.1
Q ss_pred eEecccccceEEEEEcCC----C---CEEEEeeCCCceEEEEcCCCee-----eEEecCC-----CcceEEEEEc----C
Q 021925 4 ILMKGHERPLTYLKYNKD----G---DLLFSCAKDHTPTVWFADNGER-----LGTYRGH-----NGAVWCCDVS----R 62 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~----~---~~l~s~~~dg~v~iw~~~~~~~-----~~~~~~~-----~~~v~~i~~~----~ 62 (305)
..+.+|..+|++++|+|+ + ++|++++.||.|++|++.+++. ...+..| ...|.+++|+ |
T Consensus 56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 135 (397)
T 1sq9_A 56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 135 (397)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence 357799999999999999 9 9999999999999999998886 8888888 5899999999 9
Q ss_pred CCcE-EEEEeCCCcEEEEecCC------CCeeE-----EEe--------eCCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925 63 DSMT-LITGSADQTAKLWNVET------GAQLF-----TFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (305)
Q Consensus 63 ~~~~-l~s~~~dg~v~vwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (305)
++++ |++++.||.|++||+++ ++.+. .+. +...+.+++|+|++ .++++.. ++.+
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-----dg~i 209 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-----NGTV 209 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-----TSEE
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-----CCcE
Confidence 9999 99999999999999998 66555 553 57889999999999 7777765 4566
Q ss_pred EEEEeecccCCCCCceEEEEec---c---CCCeeEEEEcCCCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccC----
Q 021925 123 HVKRIARDPADQGGESVLILKG---P---QGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKETG---- 189 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~---- 189 (305)
.+|++. ..+.+..+.. | ...|.+++|+|++++|++++.| |.|++||+++++.+..+. .
T Consensus 210 ~i~d~~------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~---~~~~~ 280 (397)
T 1sq9_A 210 QISELS------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHS 280 (397)
T ss_dssp EEEETT------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC---
T ss_pred EEEECC------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec---cCccc
Confidence 777764 2466777888 8 9999999999999999999999 999999999999888886 5
Q ss_pred ---------CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-------e---------------CCCeeEE
Q 021925 190 ---------HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------T---------------ERPVNAV 238 (305)
Q Consensus 190 ---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~---------------~~~v~~~ 238 (305)
|...|.+++|+|++++|++++.||.|++||+++++++..+. + ..+|.++
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 88999999999999999999999999999999999998887 3 7889999
Q ss_pred EecCCC----------CcEEEeeCCcEE
Q 021925 239 TMSPLL----------DHVCIGEPQTIK 256 (305)
Q Consensus 239 ~~~~~~----------~~l~~~~~~~~~ 256 (305)
+|+|++ ++|++|+.++..
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EeccccccccccccccceEEEecCCCcE
Confidence 999998 799999999983
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=251.34 Aligned_cols=240 Identities=21% Similarity=0.341 Sum_probs=209.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
|.+.|++++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 788999999999999999999999999999 6788889999999999999999999999999999999999999998888
Q ss_pred EEeeC-CC---------------ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925 89 TFNFD-SP---------------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 89 ~~~~~-~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (305)
.+... .. +.++.|++++.+++.+. .+.+.++++.. .+....+..|...|.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~~~d~~~------~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------KGAIFVYQITE------KTPTGKLIGHHGPISVL 253 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECG------GGCEEEEETTC------SSCSEEECCCSSCEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC------CCeEEEEEcCC------CceeeeeccCCCceEEE
Confidence 77733 33 89999999987665554 34566666542 35667778999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T 231 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 231 (305)
+|+|++++|++++.||.|++||+++++.+..+. .|...+.+++|+|++ .+++++.||.|++||+++++.+..+. +
T Consensus 254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp EEETTTTEEEEEETTSCEEEECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 999999999999999999999999988888776 688999999999999 99999999999999999999998887 6
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
..++.+++|+|++++|++++.++. +.+|++....
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~~~~~~~ 363 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQ-----VNVYDLKKLN 363 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSC-----EEEEECHHHH
T ss_pred CccEEEEEEcCCCCEEEEEECCCe-----EEEEECCCCc
Confidence 889999999999999999999987 5555554433
No 51
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-36 Score=237.56 Aligned_cols=243 Identities=16% Similarity=0.242 Sum_probs=195.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|++...
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 58899999999999 99999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ---CeeEEEe-eCCCceEEEEecCCceEEEe-CCcceeee-----------------------------------eeEEE
Q 021925 85 ---AQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELN-----------------------------------SAIHV 124 (305)
Q Consensus 85 ---~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------------~~~~~ 124 (305)
+.+..+. +...+.++.+. +..++++ .++.+.++ +.+.+
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 2333333 55566666662 2233332 22222211 12222
Q ss_pred EEeecccCCCCCceEEEEec-cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC
Q 021925 125 KRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (305)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 203 (305)
|+ ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+. +|...|++++|+|++
T Consensus 170 ~d--------~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 170 WQ--------NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPNG 237 (313)
T ss_dssp EE--------TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTS
T ss_pred Ee--------cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecCC
Confidence 22 1234455555 889999999999998 9999999999999999999998887 789999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 204 SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 204 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
.|++++.||.|++||+++++++..+. +..+|.+++|+|+++ +++++.++. +++|++...
T Consensus 238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-----i~iw~~~~~ 297 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL-----VRIFSQEKS 297 (313)
T ss_dssp -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC-----EEEEESCGG
T ss_pred -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc-----EEEEeCCCC
Confidence 68999999999999999999999888 677999999999998 566778877 566665443
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-37 Score=251.58 Aligned_cols=245 Identities=13% Similarity=0.124 Sum_probs=192.9
Q ss_pred eEecccccceEEEEEcCCCCEEEEe-----------eCCCceEEEEcCCCeee----EEe-----cCCCcceEEEEEcCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSC-----------AKDHTPTVWFADNGERL----GTY-----RGHNGAVWCCDVSRD 63 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~-----------~~dg~v~iw~~~~~~~~----~~~-----~~~~~~v~~i~~~~~ 63 (305)
+.|.+|...|.+++++ ++.+++| +.|+.+++|++.+.+.. ... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4577899999988765 4566655 45788999998764321 111 234567899999999
Q ss_pred CcEEEEE--eCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce--E
Q 021925 64 SMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES--V 139 (305)
Q Consensus 64 ~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 139 (305)
|++++++ +.|++|+|||+++++.+..+.+...|.+++|+|+++++++++++.. ..+... .++. .
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~------~~~~~~------~~~~~~~ 212 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSL------EVISTV------TGSCIAR 212 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCE------EEEETT------TCCEEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeE------EEEEec------cCcceee
Confidence 9988654 4689999999999999999999999999999999999999876433 222221 1122 2
Q ss_pred EEEeccCCCeeEEEEcCCCCEEEEeeCCC----cEEEEeCCCCcEee-eeccccCCccceEEEEEcCCCCEEEEEeCCCe
Q 021925 140 LILKGPQGRINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (305)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 214 (305)
.....|...+.+++|+|+++++++++.|+ .+++||+....... ......+|...|++++|+|+|++||+|+.|++
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~ 292 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS 292 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence 23456888899999999999999999887 68899987665321 11222378899999999999999999999999
Q ss_pred EEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 215 AKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
|+|||+++++++..+. |..+|++++|+|||++|++|+.|+. +++|++.
T Consensus 293 V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-----vrvw~ip 342 (365)
T 4h5i_A 293 IALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT-----IHIIKLP 342 (365)
T ss_dssp EEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-----EEEEECC
T ss_pred EEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-----EEEEEcC
Confidence 9999999999998864 8999999999999999999999998 6666653
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-36 Score=243.29 Aligned_cols=246 Identities=14% Similarity=0.156 Sum_probs=214.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW 79 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vw 79 (305)
.+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...|.+++|+|+++++++++.+ |.|++|
T Consensus 69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 578899999999999999999999999999999999999998888 88999999999999999999998 999999
Q ss_pred ecCCCCee-----------EEEe-eCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 80 NVETGAQL-----------FTFN-FDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 80 d~~~~~~~-----------~~~~-~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
|++++... ..+. +.. .+.+++|+|++..++++.. ++.+.+|++.. .......+..|
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~-----~~~~~~~~~~~ 217 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYDVSN-----NYEYVDSIDLH 217 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----TSEEEEEETTT-----TTEEEEEEECC
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----CCEEEEEECCC-----CcEeEEEEecC
Confidence 99766432 2222 333 8999999999998888765 45666776642 24677888899
Q ss_pred CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC------------
Q 021925 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------------ 213 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------ 213 (305)
...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+..++|+|+++++++++.++
T Consensus 218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 293 (369)
T 3zwl_B 218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG 293 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC------------
T ss_pred CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence 9999999999999999999999999999999999988886 778999999999999999999988
Q ss_pred --eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925 214 --SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 214 --~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
.+++||..+++++..+. |...|.+++|+|++++|++++.|+. +++|++....
T Consensus 294 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----v~iw~~~~~~ 348 (369)
T 3zwl_B 294 KFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF-----IRLHHFEKSY 348 (369)
T ss_dssp -CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-----EEEEEECHHH
T ss_pred cceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe-----EEEEECcccc
Confidence 89999999999999888 8889999999999999999999997 5555554433
No 54
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-37 Score=272.19 Aligned_cols=247 Identities=19% Similarity=0.332 Sum_probs=205.8
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcC--CCeeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~vw 79 (305)
.++.+|.++|++++|+|+|++|++|+.||.|++||+. +++.+..+.+|.++|.+++|+|+ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 3578999999999999999999999999999999998 55677889999999999999987 8999999999999999
Q ss_pred ecCCCC--eeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEE
Q 021925 80 NVETGA--QLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 80 d~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (305)
|+++++ .+..+. +...+.+++|+|+ +..+++++. ++.+.+|++.... ......+.+|...|.+++|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-----dg~I~vwdl~~~~----~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCSSS----CCCCEEEECCSSCEEEEEE
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC-----CCcEEEEEeecCC----CcceeEeecCCCceEEEEe
Confidence 999886 444444 7889999999998 888888765 5677778775431 2345567889999999999
Q ss_pred cC-------------CCCEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCccceEEEEEcCC---CCEEEEEeCCCe
Q 021925 155 GP-------------LNRTIISAGEDAIVRIWDTETGK----LLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKS 214 (305)
Q Consensus 155 ~~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~ 214 (305)
+| +++++++|+.||.|++||++++. ....+. +|...|++++|+|+ +++|++++.||.
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec---CCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 99 58999999999999999998763 344444 79999999999999 899999999999
Q ss_pred EEEEEcCCceE-----EEE-EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 215 AKLWDARTLEL-----IKT-YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 215 i~iwd~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
|++||+++++. ... ..+...|.+++|+|+++++++|+.++. +++|+..
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~-----I~vwd~~ 284 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKEN 284 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC-----EECCBCC
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE-----EEEEecC
Confidence 99999998642 111 126778999999999999999999987 6666654
No 55
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=244.70 Aligned_cols=241 Identities=15% Similarity=0.245 Sum_probs=206.2
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-CCe
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQ 86 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-~~~ 86 (305)
.|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.|++++.||.|++||++. ...
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce
Confidence 489999999999999999999999999999999999999999999999999994 56999999999999999984 455
Q ss_pred eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC-EEEEe
Q 021925 87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISA 164 (305)
Q Consensus 87 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 164 (305)
+..+. +...+.+++|+|++..+++++. ++.+.+|++. ..+....+..|...|.+++|+|++. .++++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGN-----DNVVQIWDAR------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------CSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCeEEEccCC------CCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence 55555 8889999999999999998875 4567777764 3467778889999999999999774 55565
Q ss_pred e--CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE--EeCCCeEEEEEcCCceEEEEE--e-eCCCeeE
Q 021925 165 G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTY--V-TERPVNA 237 (305)
Q Consensus 165 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~--~-~~~~v~~ 237 (305)
+ .|+.|++||+++++.+..+. +...+.+++|+|+++.|++ |+.||.|++||+.+++..... . |...|.+
T Consensus 279 ~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~ 354 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354 (401)
T ss_dssp CCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred cCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence 4 79999999999999988885 6778999999999999998 448999999999987665543 3 7889999
Q ss_pred EEecCCCCcEEEeeCCcEEEEEEeehhhhhhhh
Q 021925 238 VTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDI 270 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
++|+|++++|++++.|+. +++|++....
T Consensus 355 ~~~s~dg~~l~s~~~dg~-----i~iw~~~~~~ 382 (401)
T 4aez_A 355 SALSPDGRILSTAASDEN-----LKFWRVYDGD 382 (401)
T ss_dssp EEECTTSSEEEEECTTSE-----EEEEECCC--
T ss_pred EEECCCCCEEEEEeCCCc-----EEEEECCCCc
Confidence 999999999999999997 6666654433
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-36 Score=278.56 Aligned_cols=248 Identities=20% Similarity=0.331 Sum_probs=218.7
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..+.+|.+.|++++|+|+|++|++|+.||.|++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEe-eCCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
++.+..+. +...+.+++|+|+ +..+++++. ++.+.+|++. .++....+.+|.+.|.+++|+|++++
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-----d~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN-----DFFLKLWDLN------QKECRNTMFGHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEET-----TSCEEEEETT------SSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeC-----CCeEEEEECC------CcchhheecCCCCCEEEEEEecCCCE
Confidence 99998887 8889999999994 446666554 4567777763 34677888999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeecc----------------------------------------------------cc
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDK----------------------------------------------------ET 188 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------------------------------~~ 188 (305)
+++++.||.|++||+++++....+.. ..
T Consensus 758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 99999999999999987765443321 01
Q ss_pred CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 189 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
+|...+.+++|+|+++++++++.||.|++||+.+++.+..+. |...|.+++|+|+++.+++++.++. +.+|+..
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~-----v~vw~~~ 912 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT-----IRVWETK 912 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-----EEEEEHH
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe-----EEEEEcc
Confidence 567889999999999999999999999999999999998887 8889999999999999999999987 5556543
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-37 Score=253.26 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=204.4
Q ss_pred cccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925 9 HERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 9 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~ 83 (305)
|.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6688999999998 67999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCeeEEE----eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC----------------------CCCc
Q 021925 84 GAQLFTF----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD----------------------QGGE 137 (305)
Q Consensus 84 ~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 137 (305)
++.+..+ .+...+.+++|+|++..+++++. ++.+.+|++...... ....
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM-----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecC-----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 9988887 38889999999999999888865 456677776432110 0011
Q ss_pred eEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE--------------eeeeccccCCccceEEEEEcCC-
Q 021925 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--------------LKESDKETGHKKTITSLAKAAD- 202 (305)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~- 202 (305)
.......|...|.+++|+ ++++++++.||.|++||+++++. +..+. .|...|++++|+|+
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~ 297 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDF 297 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECT
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCC
Confidence 233444599999999999 77999999999999999987644 44444 68889999999999
Q ss_pred -CCEEEEEeCCCeEEEEEcCCceE----EEEEe-e--CCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 203 -GSHFLTGSLDKSAKLWDARTLEL----IKTYV-T--ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 203 -~~~l~~~~~dg~i~iwd~~~~~~----~~~~~-~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
+++|++++.||.|++||++++++ ...+. + ..+|.+++|+|++++|++|+.|+. +++|++
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~ 364 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS-----IWRWDR 364 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-----EEEEEC
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE-----EEEEEe
Confidence 99999999999999999998753 33555 3 689999999999999999999997 555543
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=253.29 Aligned_cols=249 Identities=15% Similarity=0.168 Sum_probs=201.4
Q ss_pred cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCC---Ce---eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (305)
Q Consensus 7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~---~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vw 79 (305)
++|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ .|.+.|.+++|+|++++|++++.||.|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 88999999999999 999999999999999999876 43 23333 499999999999999999999999999999
Q ss_pred ecC---CCCeeEEEe-------------eCCCceEEE--EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925 80 NVE---TGAQLFTFN-------------FDSPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (305)
Q Consensus 80 d~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (305)
|++ +++...... ....+.++. +++++..+++++. ++.+.+|++. ..+.+..
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~ 207 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----LSRVIIFDIR------TLERLQI 207 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----TSEEEEEETT------TCCEEEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----CCeEEEEeCC------CCeeeEE
Confidence 994 555444333 234455555 4467888887765 5667777764 3466777
Q ss_pred Eec--cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc----CCCCEEEEEeCCCeE
Q 021925 142 LKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLTGSLDKSA 215 (305)
Q Consensus 142 ~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i 215 (305)
+.. |...|++++|+|++++|++|+.||.|++||+++++++..+.. .|...|++++|+ |++.+|++++.||.|
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 777 899999999999999999999999999999999998887642 467799999655 568899999999999
Q ss_pred EEEEcCCceEEEEEe---------------------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 216 KLWDARTLELIKTYV---------------------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 216 ~iwd~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
++||+++++++..+. +...|.+++|+ ++++|++|+.|+. +++|++..
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~-----i~~wd~~~ 359 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS-----IVMFSLNE 359 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE-----EEEEETTC
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe-----EEEEECCC
Confidence 999999999888876 33457888888 7789999999987 67777665
Q ss_pred hhhhhhc
Q 021925 269 DILFYNL 275 (305)
Q Consensus 269 ~~~~~~~ 275 (305)
......+
T Consensus 360 ~~~~~~~ 366 (437)
T 3gre_A 360 LSSSKAV 366 (437)
T ss_dssp GGGCEEE
T ss_pred cccceEE
Confidence 5544433
No 59
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-35 Score=246.05 Aligned_cols=245 Identities=17% Similarity=0.272 Sum_probs=208.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|++++|+|+|++||+|+.||.|++||+++++.+..+.+|...+.++.++ +..|++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 456788999999999999999999999999999999999999999999999998875 569999999999999998865
Q ss_pred Ce-eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCC-EE
Q 021925 85 AQ-LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI 161 (305)
Q Consensus 85 ~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 161 (305)
.. +..+. +...+..+.+.|++..++++.. ++.+.+|+..... ...........|...|.+++|+|.+. .+
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-----D~~v~i~~~~~~~--~~~~~~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCCS--SCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeec-----cccceEEeecccc--ccceeeeeecccCCceeeeeeCCCcccEE
Confidence 43 34444 7888999999999999988865 4556666654322 22345567788999999999999774 45
Q ss_pred EE--eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925 162 IS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVN 236 (305)
Q Consensus 162 ~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~v~ 236 (305)
++ |+.|+.|++||+++++....+. +...+.++.|+|+++.+++++ .|+.|++||+.+++++.++. |..+|.
T Consensus 293 a~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~ 368 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 368 (420)
T ss_dssp EEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 44 4579999999999999988886 567899999999999988765 79999999999999999998 889999
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
+++|+|+|++|++|+.|+. +++|++.
T Consensus 369 ~l~~spdg~~l~S~s~D~t-----vriWdv~ 394 (420)
T 4gga_A 369 SLTMSPDGATVASAAADET-----LRLWRCF 394 (420)
T ss_dssp EEEECTTSSCEEEEETTTE-----EEEECCS
T ss_pred EEEEcCCCCEEEEEecCCe-----EEEEECC
Confidence 9999999999999999998 6666653
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=251.11 Aligned_cols=243 Identities=14% Similarity=0.245 Sum_probs=205.3
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEE
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK 77 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~ 77 (305)
++...+|...|++++|+|++++|++|+.||.|++||+.+ .+.+..+.+|.+.|.+++|+|+ +++|++++.||.|+
T Consensus 60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 344457899999999999999999999999999999987 4578888999999999999998 89999999999999
Q ss_pred EEecCCCC------eeEEE----eeCCCceEEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-
Q 021925 78 LWNVETGA------QLFTF----NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP- 145 (305)
Q Consensus 78 vwd~~~~~------~~~~~----~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (305)
+||+++++ ..... .+...+.+++|+|+ +..+++++. ++.+.+|++.. .+....+..+
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~------~~~~~~~~~~~ 208 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----SNFASIWDLKA------KKEVIHLSYTS 208 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----SSCEEEEETTT------TEEEEEECCCC
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----CCCEEEEECCC------CCcceEEeccc
Confidence 99999886 33332 37789999999998 677777665 55677777643 3455666655
Q ss_pred -----CCCeeEEEEcCCC-CEEEEeeCCC---cEEEEeCCCC-cEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCe
Q 021925 146 -----QGRINRAVWGPLN-RTIISAGEDA---IVRIWDTETG-KLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKS 214 (305)
Q Consensus 146 -----~~~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 214 (305)
...+.+++|+|++ .++++++.|+ .|++||++++ +++..+. .+|...|++++|+| ++++|++++.||.
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 7889999999997 6899999998 9999999986 4444332 15889999999999 9999999999999
Q ss_pred EEEEEcCCceEEEEEe-eCCCeeEEEecCCC-CcEEEeeCCcEEEE
Q 021925 215 AKLWDARTLELIKTYV-TERPVNAVTMSPLL-DHVCIGEPQTIKFM 258 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~ 258 (305)
|++||+++++++..+. |...|.+++|+|++ +++++++.++...+
T Consensus 287 v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 287 VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEE
Confidence 9999999999999887 78899999999999 78999998887433
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.9e-37 Score=254.99 Aligned_cols=241 Identities=15% Similarity=0.206 Sum_probs=195.2
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------eeEEecCCC------------cceEEEEEcCCC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHN------------GAVWCCDVSRDS 64 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~ 64 (305)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++ ....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999876 577888998 889999999998
Q ss_pred --cEEEEEeCCCcEEEEecCCCCee---------------------------------------EEE--eeCCCceEEEE
Q 021925 65 --MTLITGSADQTAKLWNVETGAQL---------------------------------------FTF--NFDSPARSVDF 101 (305)
Q Consensus 65 --~~l~s~~~dg~v~vwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~~ 101 (305)
..|++++.||.|++||+.+++.. ..+ .+...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764432 122 27788999999
Q ss_pred ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-------EEeccCCCeeEEEEcCCC-CEEEEeeCCCcEEEE
Q 021925 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIW 173 (305)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw 173 (305)
+|++..++++. ++.+.+|++... ..... .+.+|...|.+++|+|++ ++|++|+.||.|++|
T Consensus 186 ~~~~~~l~s~~------d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 186 NSDYETYLSAD------DLRINLWHLEIT-----DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CTTSSEEEEEC------SSEEEEEETTEE-----EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred cCCCCEEEEeC------CCeEEEEECCCC-----CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 99999999874 455666665421 11111 245889999999999998 999999999999999
Q ss_pred eCCCCcE----eeeeccccCCcc------------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceEEEEEeeCCC--
Q 021925 174 DTETGKL----LKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTERP-- 234 (305)
Q Consensus 174 d~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-- 234 (305)
|+++++. +..+. .|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+.....
T Consensus 255 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 255 DMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp ETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred ECcCCccccceeeEec---cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9998876 55555 4554 8999999999999999998 9999999997 888887773332
Q ss_pred --------------eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 235 --------------VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 235 --------------v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+..++|+|++++|++|+.|+. +++|+...
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~-----v~iwd~~~ 373 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF-----FRMFDRNT 373 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE-----EEEEETTT
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCE-----EEEEEcCC
Confidence 234999999999999999998 55565543
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-35 Score=241.36 Aligned_cols=250 Identities=13% Similarity=0.138 Sum_probs=208.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|...|++++|+|++++|++++.||.|++||+++++.... +..|...|.+++|+|++++|++++.||.|++||++
T Consensus 47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence 4779999999999999999999999999999999998875444 36789999999999999999999999999999998
Q ss_pred CCCe---eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC------------CCCCceEEEEecc
Q 021925 83 TGAQ---LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------------DQGGESVLILKGP 145 (305)
Q Consensus 83 ~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 145 (305)
+++. ...+. +...+.+++|+|++..+++++. ++.+.+|++..... ....+....+..|
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred CCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC-----CCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 8874 23332 5788999999999998888765 45677777542111 1235677788899
Q ss_pred CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--c
Q 021925 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART--L 223 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~ 223 (305)
...+.+++|+|++++|++++.||.|++||+++++.+..+. .|...+.+++|+|++++|+++ .|+.|++||+++ +
T Consensus 202 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG 277 (372)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCc
Confidence 9999999999999999999999999999999999988887 788899999999999988877 899999999987 4
Q ss_pred eE--E------------------------------------EEE--eeCCCeeEEEec-CCC---CcEEEeeCCcEEEEE
Q 021925 224 EL--I------------------------------------KTY--VTERPVNAVTMS-PLL---DHVCIGEPQTIKFML 259 (305)
Q Consensus 224 ~~--~------------------------------------~~~--~~~~~v~~~~~~-~~~---~~l~~~~~~~~~~~~ 259 (305)
+. + ..+ .|..+|++++|+ ++| ++|++|+.|+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~---- 353 (372)
T 1k8k_C 278 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG---- 353 (372)
T ss_dssp EEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE----
T ss_pred eEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc----
Confidence 21 0 222 378899999976 666 89999999998
Q ss_pred Eeehhhhhh
Q 021925 260 LVYLFVLFL 268 (305)
Q Consensus 260 ~~~~~~~~~ 268 (305)
+++|++..
T Consensus 354 -i~~W~~~~ 361 (372)
T 1k8k_C 354 -MSIWDVRS 361 (372)
T ss_dssp -EEEEEHHH
T ss_pred -eEEEEecC
Confidence 67776644
No 63
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=255.43 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=206.8
Q ss_pred EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCe------eeE---EecCCCcceEEEEEcCC-CcEEEEEeCC
Q 021925 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE------RLG---TYRGHNGAVWCCDVSRD-SMTLITGSAD 73 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~------~~~---~~~~~~~~v~~i~~~~~-~~~l~s~~~d 73 (305)
.+.+|.+.|++++|+|+ +++|++++.||.|++||+.+++ ... .+..|...|.+++|+|+ +.+|++++.|
T Consensus 108 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 187 (416)
T 2pm9_A 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS 187 (416)
T ss_dssp ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS
T ss_pred hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC
Confidence 47789999999999998 8999999999999999999876 333 33679999999999998 7899999999
Q ss_pred CcEEEEecCCCCeeEEEee-------CCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-c
Q 021925 74 QTAKLWNVETGAQLFTFNF-------DSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-G 144 (305)
Q Consensus 74 g~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 144 (305)
|.|++||+++++.+..+.. ...+.+++|+|++ .+++++.... ....+.+|++... ......+. +
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~~~~i~~~d~~~~-----~~~~~~~~~~ 260 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD--NDPSILIWDLRNA-----NTPLQTLNQG 260 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS--SSCCCCEEETTST-----TSCSBCCCSC
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC--CCceEEEEeCCCC-----CCCcEEeecC
Confidence 9999999999998888874 6789999999997 4666665421 0115666766432 13445566 8
Q ss_pred cCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCC-CEEEEEeCCCeEEEEEcCC
Q 021925 145 PQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 145 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 222 (305)
|...|.+++|+| ++++|++++.||.|++||+++++.+..+. .|...|++++|+|++ .+|++++.||.|++||+.+
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP---ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE---CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec---CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 999999999999 89999999999999999999999988887 789999999999998 8999999999999999987
Q ss_pred ceEEEEE---------------e---------------------eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 223 LELIKTY---------------V---------------------TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 223 ~~~~~~~---------------~---------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
++..... . +..++.+++|+|+|++|++++.++. +++|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~-----v~~w~~ 412 (416)
T 2pm9_A 338 LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKG-----VSITNP 412 (416)
T ss_dssp CCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSC-----BCCBCC
T ss_pred CCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCe-----EEEEEe
Confidence 6532211 0 3456789999999999999998887 788876
Q ss_pred hh
Q 021925 267 FL 268 (305)
Q Consensus 267 ~~ 268 (305)
..
T Consensus 413 ~~ 414 (416)
T 2pm9_A 413 KI 414 (416)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.8e-35 Score=245.11 Aligned_cols=245 Identities=21% Similarity=0.363 Sum_probs=209.2
Q ss_pred eEecccccce-EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 4 ~~l~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
..+.+|.+.| .++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .|++|+.||+|++||++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 3688998885 66665 56799999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCC-----------------CCceEEEE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQ-----------------GGESVLIL 142 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (305)
+++.+..+. +...+.++++.+ ++..+++++. ++.+.+|++....... .......+
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR-----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET-----TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC-----CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 999888887 889999999995 6677777765 5567777765432211 11135677
Q ss_pred eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
.+|...+.++ +++++++++++.||.|++||+++++.+..+. +|...|.+++|+|+++.|++|+.||.|++||+++
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 8888888877 5778999999999999999999999988887 7999999999999999999999999999999999
Q ss_pred ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
++++..+. |...|.+++|+ ++++++|+.|+. +++|+...
T Consensus 342 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-----v~vwd~~~ 381 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-----IRGWDAND 381 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-----EEEEETTT
T ss_pred CcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-----EEEEECCC
Confidence 99999987 88899999998 478999999998 55555543
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.6e-36 Score=247.74 Aligned_cols=238 Identities=20% Similarity=0.242 Sum_probs=194.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||++++
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEee----C---------------------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE
Q 021925 85 AQLFTFNF----D---------------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 139 (305)
Q Consensus 85 ~~~~~~~~----~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (305)
+.+..+.. . ..+.+++|+|++..++++.. ++.+.+|++.. .+..
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~------~~~~ 282 (420)
T 3vl1_A 214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-----SGVITVHNVFS------KEQT 282 (420)
T ss_dssp EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-----TSCEEEEETTT------CCEE
T ss_pred ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-----CCeEEEEECCC------Ccee
Confidence 88888762 2 44555566788888888765 55677777642 2333
Q ss_pred E-EEeccCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925 140 L-ILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (305)
Q Consensus 140 ~-~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 216 (305)
. ....|...|.+++|+|+++ +|++|+.||.|++||+++++. +..+.. .|...++++.+ +++++|++++.||.|+
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI--NEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE--STTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc--cCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 3 3456889999999999998 999999999999999998754 555541 26678888865 5788999999999999
Q ss_pred EEEcCCc----------eEEEEEeeCCCeeEEEecCCCC---cEEEeeCCcEE
Q 021925 217 LWDARTL----------ELIKTYVTERPVNAVTMSPLLD---HVCIGEPQTIK 256 (305)
Q Consensus 217 iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~~ 256 (305)
+||+... .......+...|.+++|+|+++ .+++++.++..
T Consensus 360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~ 412 (420)
T 3vl1_A 360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFC 412 (420)
T ss_dssp EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEE
T ss_pred EEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceE
Confidence 9998863 1222223777899999999999 66666667763
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.9e-36 Score=241.91 Aligned_cols=239 Identities=15% Similarity=0.240 Sum_probs=198.0
Q ss_pred ecccccceEEEEEcCC---CCEEEEeeCCCceEEEEcCCCe-eeEEecCCCcceEEEEE------cCCCcEEEEEeCCCc
Q 021925 6 MKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDV------SRDSMTLITGSADQT 75 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~l~s~~~dg~ 75 (305)
..+|..+|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 4489999999999998 6999999999999999999888 88899999999999954 688999999999999
Q ss_pred EEEEecCCCC-eeEEEee-----CCCceEEE----EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 76 AKLWNVETGA-QLFTFNF-----DSPARSVD----FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 76 v~vwd~~~~~-~~~~~~~-----~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
|++||+++++ .+..+.. ...+.+++ |+|++..++++.. ++.+.+|++.. ........|
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-------~~~~~~~~~ 208 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----NGDIKLFDLRN-------MALRWETNI 208 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----TSEEEEEETTT-------TEEEEEEEC
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----CCeEEEEECcc-------CceeeecCC
Confidence 9999999887 6666652 33788888 6789998888865 45666776643 223445778
Q ss_pred CCCeeEEEEcC---CCCEEEEeeCCCcEEEEeCCCCcEeeeec--cccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 021925 146 QGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWD 219 (305)
Q Consensus 146 ~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 219 (305)
...+.+++|+| +++++++++.||.|++||+++++....+. ...+|...|++++|+|+++ +|++++.||.|++||
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 89999999999 89999999999999999998766544432 2226889999999999998 899999999999999
Q ss_pred cCCc-------------------eEEEEEe-eCCCeeEEEecCCCCcEE-EeeCCcEE
Q 021925 220 ARTL-------------------ELIKTYV-TERPVNAVTMSPLLDHVC-IGEPQTIK 256 (305)
Q Consensus 220 ~~~~-------------------~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~~~ 256 (305)
++++ +++..+. |..+|.+++|+|++++|+ +++.|+..
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 9854 3455555 888999999999999998 68888873
No 67
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=9.5e-36 Score=247.79 Aligned_cols=248 Identities=14% Similarity=0.230 Sum_probs=204.1
Q ss_pred eEecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCC----------CeeeEEecCCCcceEEEEEcCCCc-EEEEEe
Q 021925 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSM-TLITGS 71 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~ 71 (305)
....+|.+.|++++|+|+ +.+||+++.||.|++|++.+ .+.+..+.+|...|.+++|+|+++ +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 446789999999999997 78999999999999999986 577788899999999999999988 999999
Q ss_pred CCCcEEEEecCCCCe-------eEEE-eeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 72 ADQTAKLWNVETGAQ-------LFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 72 ~dg~v~vwd~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
.||.|++||+.++.. ...+ .+...+.+++|+| ++.++++++. ++.+.+|++.... ..+....+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-----dg~i~i~d~~~~~---~~~~~~~~ 273 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-----DQKLMIWDTRNNN---TSKPSHTV 273 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-----TSEEEEEETTCSC---SSSCSEEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-----CCeEEEEECCCCC---CCcceeEe
Confidence 999999999987432 2333 3778899999999 5667766654 5667777775321 12456677
Q ss_pred eccCCCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 021925 143 KGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWD 219 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 219 (305)
..|...|++++|+|+++ ++++|+.||.|++||+++ ++++..+. .|...|++++|+|+++ +|++++.||.|++||
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 89999999999999987 688999999999999998 45566665 6899999999999985 689999999999999
Q ss_pred cCC--------------ceEEEEEe-eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEeehhhhh
Q 021925 220 ART--------------LELIKTYV-TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 220 ~~~--------------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
++. .+.+..+. |...|.+++|+|+++ ++++++.++. +.+|++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~-----i~iw~~~ 409 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI-----MQVWQMA 409 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE-----EEEEEEC
T ss_pred CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC-----EEEeEcc
Confidence 987 24555554 677899999999999 7788888887 5555543
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=245.97 Aligned_cols=235 Identities=17% Similarity=0.270 Sum_probs=207.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc---------------eEEEEEcCCCcEEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA---------------VWCCDVSRDSMTLIT 69 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~---------------v~~i~~~~~~~~l~s 69 (305)
.+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+... +.+++|+|++ .+++
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 222 (425)
T 1r5m_A 144 VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVI 222 (425)
T ss_dssp EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEE
T ss_pred eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEE
Confidence 47789999999999999999999999999999999999999999888776 9999999976 5888
Q ss_pred EeCCCcEEEEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925 70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (305)
Q Consensus 70 ~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (305)
++.||.|++||+++++.+..+. +...+.+++|+|++..+++++. ++.+.+|++.. .+....+..|...
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~~~~~~~~~~~~ 291 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-----DGTLRIWHGGN------GNSQNCFYGHSQS 291 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-----TSCEEEECSSS------BSCSEEECCCSSC
T ss_pred EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-----CCEEEEEECCC------CccceEecCCCcc
Confidence 9999999999999998888776 7889999999999998888764 45566666532 3556777889999
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce----
Q 021925 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---- 224 (305)
Q Consensus 149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---- 224 (305)
+.+++|+|++ ++++++.||.|++||+++++.+..+. .|...+.+++|+|++++|++++.||.|++||+++++
T Consensus 292 i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 292 IVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI---VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE---CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred EEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc---cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 9999999999 99999999999999999999888887 688999999999999999999999999999999888
Q ss_pred ----------------EEEEEe-eCC--CeeEEEecCCCCcEEEeeCCcE
Q 021925 225 ----------------LIKTYV-TER--PVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 225 ----------------~~~~~~-~~~--~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
++..+. +.. .|.+++|+|++++|++++.++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE 417 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence 778777 444 8999999999999999999987
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.4e-36 Score=248.17 Aligned_cols=239 Identities=12% Similarity=0.129 Sum_probs=203.4
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE-e
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-N 91 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~ 91 (305)
+++++|+|+|++|++++.||.|++||..+++....+..| ..+....|+|++++|++++.||.|++||+++++....+ .
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 458999999999999999999999999988777667666 45566678999999999999999999999988887776 4
Q ss_pred eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (305)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 171 (305)
+...+.+++|+|++..+++++. ++.+.+|++. ..+....+.+|...|.+++|+|++++|++++.||.|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVK------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCC------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 8899999999999998888765 5667777764 3456677889999999999999999999999999999
Q ss_pred EEeCCCCcEeeeeccccCCccceEEE---------------------EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 172 IWDTETGKLLKESDKETGHKKTITSL---------------------AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v~~~---------------------~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+||+++++.+..+.....+...+.++ +|+|++++|++++.||.|++||+++++.+..+.
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 99999999988887544444455554 457899999999999999999999998887776
Q ss_pred --eCCCeeEEEecCCCC-cEEEeeCCcEEEEEEeehhhhhh
Q 021925 231 --TERPVNAVTMSPLLD-HVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 231 --~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+...|.+++|+|+++ +|++|+.++. +++|++..
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~-----i~vwd~~~ 322 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYAGYENGM-----LAQWDLRS 322 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEEEETTSE-----EEEEETTC
T ss_pred cccCCCceeEEEeCCCCCEEEEEeCCCe-----EEEEEcCC
Confidence 678899999999999 8999999987 55665543
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.6e-35 Score=237.86 Aligned_cols=253 Identities=13% Similarity=0.069 Sum_probs=201.3
Q ss_pred CCceE-ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCCc-EEEEEeCCCc
Q 021925 1 MRPIL-MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQT 75 (305)
Q Consensus 1 ~~~~~-l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~ 75 (305)
|+.+. ..+|.+.|++++|+|++++|++++.||.|++|++.+++ ....+.+|...|.+++|+|+++ +|++++.||.
T Consensus 1 m~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CcceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence 45555 46899999999999999999999999999999998876 3455567999999999999999 9999999999
Q ss_pred EEEEec-CCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC---CCceEEEEeccCCCe
Q 021925 76 AKLWNV-ETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGPQGRI 149 (305)
Q Consensus 76 v~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i 149 (305)
|++||+ ++++...... +...+.+++|+| +..+++++. ++.+.+|++....... ..+.+..+. |...+
T Consensus 81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v 153 (342)
T 1yfq_A 81 ILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASW-----DGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKI 153 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEET-----TSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCE
T ss_pred EEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcC-----CCeEEEEcccccccccccccCCeeeEEe-eCCce
Confidence 999999 8887655445 788999999999 777777664 4566677665310000 011122223 78899
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCC-CcEeeeeccccCCccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc----
Q 021925 150 NRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL---- 223 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---- 223 (305)
.+++|+|++ +++++.|+.|++||+++ +....... ...+...+.+++|+| +++++++++.||.|++|+++..
T Consensus 154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 230 (342)
T 1yfq_A 154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp EEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred EEEEecCCc--EEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence 999999987 99999999999999998 54321111 125788999999999 9999999999999999999876
Q ss_pred --eEEEEEe-eCC---------CeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 224 --ELIKTYV-TER---------PVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 224 --~~~~~~~-~~~---------~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+....+. +.. +|.+++|+|++++|++|+.++. +++|+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~ 282 (342)
T 1yfq_A 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-----ISCWNLQT 282 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-----EEEEETTT
T ss_pred ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-----EEEEcCcc
Confidence 6667776 433 8999999999999999999987 55555543
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.5e-34 Score=241.63 Aligned_cols=243 Identities=24% Similarity=0.391 Sum_probs=207.4
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEc--CCCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|.+.|++++|+|++ .+++|+.||+|++||+++++.+..+.+|.+.|.+++|+ ++++++++++.||.|++||++
T Consensus 157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 477999999999999988 99999999999999999999999999999999999998 577899999999999999998
Q ss_pred CCCeeEE-----------------------Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce
Q 021925 83 TGAQLFT-----------------------FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138 (305)
Q Consensus 83 ~~~~~~~-----------------------~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (305)
+++.... .. +...+.+ +++++..+++++. ++.+.+|++. ..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~-----d~~i~vwd~~------~~~~ 302 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSY-----DNTLIVWDVA------QMKC 302 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEET-----TSCEEEEETT------TTEE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeC-----CCeEEEEECC------CCcE
Confidence 7764322 11 3334444 4677778877765 5567777763 3567
Q ss_pred EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 218 (305)
+..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+. +|...|.+++|+ +++|++++.||.|++|
T Consensus 303 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---GHTALVGLLRLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence 78889999999999999999999999999999999999999998887 799999999997 5799999999999999
Q ss_pred EcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 219 DARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 219 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
|+++++......+...+..++|+|+++++++|+ ++. +++|+.......
T Consensus 378 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~-----i~iwd~~~g~~~ 425 (464)
T 3v7d_B 378 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQ-----FNIYNLRSGKLV 425 (464)
T ss_dssp ETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTE-----EEEEETTTCCEE
T ss_pred ECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCe-----EEEEECCCCcEE
Confidence 999998888888888899999999999999988 555 677776555444
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-36 Score=247.43 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=165.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
.+.+|.+.|++++|+|++++|++++.||.|++||+.+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 129 (377)
T 3dwl_C 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129 (377)
T ss_dssp CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence 477999999999999999999999999999999999877 66778889999999999999999999999999999999
Q ss_pred CCCCe---eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC------------CCceEEEEec
Q 021925 82 ETGAQ---LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ------------GGESVLILKG 144 (305)
Q Consensus 82 ~~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 144 (305)
++++. ...+. +...+.+++|+|++..+++++. ++.+.+|++....... ..+....+ +
T Consensus 130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 203 (377)
T 3dwl_C 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P 203 (377)
T ss_dssp -----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES-----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred CCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC-----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence 98873 55555 6889999999999999888765 5667778774221111 12344445 8
Q ss_pred cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE----eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
|...|.+++|+|++++|++++.||.|++||+++++. +..+. +|...|.+++|+|++++|++++.++.+ +|+.
T Consensus 204 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK---LSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE---CSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec---CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 999999999999999999999999999999999876 55555 789999999999999999998876655 6665
Q ss_pred C
Q 021925 221 R 221 (305)
Q Consensus 221 ~ 221 (305)
.
T Consensus 280 ~ 280 (377)
T 3dwl_C 280 N 280 (377)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3e-35 Score=242.84 Aligned_cols=233 Identities=18% Similarity=0.269 Sum_probs=197.0
Q ss_pred EecccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCc
Q 021925 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT 75 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~ 75 (305)
.+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.||.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 4679999999999999 9999999999999999999987 6678889999999999999998 69999999999
Q ss_pred EEEEecCCCCeeEEE--e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCC-ee
Q 021925 76 AKLWNVETGAQLFTF--N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGR-IN 150 (305)
Q Consensus 76 v~vwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~ 150 (305)
|++||+++++.+..+ . +...+.+++|+|++..+++++. ++.+.+|++.. .+.+..+ ..|.+. +.
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~ 224 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-----DKRVRVIEPRK------GTVVAEKDRPHEGTRPV 224 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-----TSEEEEEETTT------TEEEEEEECSSCSSSCC
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-----CCcEEEEeCCC------CceeeeeccCCCCCcce
Confidence 999999999998888 3 7889999999999999888865 55677777642 4556666 678776 89
Q ss_pred EEEEcCCCCEEEEe---eCCCcEEEEeCCCCcE-eeeeccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceE
Q 021925 151 RAVWGPLNRTIISA---GEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLEL 225 (305)
Q Consensus 151 ~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~ 225 (305)
++.|+|+++++++| +.|+.|++||+++++. +.... ..+...+.+++|+|++++|++ |+.||.|++||+.++++
T Consensus 225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE--LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE--CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe--ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 99999999999999 7899999999998654 22221 146778999999999999864 55799999999998873
Q ss_pred -EEE---EeeCCCeeEEEecCCCCcEEEe
Q 021925 226 -IKT---YVTERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 226 -~~~---~~~~~~v~~~~~~~~~~~l~~~ 250 (305)
+.. +.+..++.+++|+|++.+++++
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred ceEeecccccCCcccceEEecccccceec
Confidence 333 3356899999999999887654
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.7e-35 Score=239.26 Aligned_cols=242 Identities=13% Similarity=0.183 Sum_probs=194.4
Q ss_pred cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecC---CCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+|.+.|.+++|+| ++++|++++.|+.|++||+.+ +.+..+.. |...|.+++|+|++++|++++.||.|++||++
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence 47999999999999 789999999999999999986 54555544 44789999999999999999999999999994
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC-CCC
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNR 159 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 159 (305)
++.+..+. +...+.+++|+|++. ++++++. ++.+.+|++..... .......+ +|...|.+++|+| +++
T Consensus 194 -~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 194 -GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSV-----DATVKLWDLRNIKD--KNSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp -SCEEEEEECSSSCEEEEEECSSCTTEEEEEET-----TSEEEEEEGGGCCS--TTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred -CCEEEEeccCCCcEEEEEECCCCCCEEEEEeC-----CCEEEEEeCCCCCc--ccceEEEe-cCCCceEEEEEcCCCCC
Confidence 66666666 788999999999998 7777654 56777888765321 12344444 7999999999999 999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeecccc----CCc----------cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKET----GHK----------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 225 (305)
+|++++.|+.|++||+++++....+.... .|. ..+..++++|++++ +++.||.|++||++++++
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 99999999999999999887665554110 112 34555777777776 778999999999999999
Q ss_pred EEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 226 IKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 226 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
+..+. +...+.+++|+|++++|++|+ |+. +++|++
T Consensus 343 ~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~-----i~iw~~ 380 (383)
T 3ei3_B 343 VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN-----ILIWNR 380 (383)
T ss_dssp EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE-----EEEEEC
T ss_pred eeeecCCCCCceEEEEEEecCccEEEEec-CCc-----EEEEec
Confidence 99887 456677789999999999997 665 556654
No 75
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-34 Score=235.01 Aligned_cols=201 Identities=20% Similarity=0.412 Sum_probs=179.0
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|.+.|.+++|+|+++.|++++.||+|++||+++++.+..+.+|...|.+++|+| ++++|++|+.||+|++||++
T Consensus 149 ~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~ 228 (354)
T 2pbi_B 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228 (354)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 4678999999999999999999999999999999999999999999999999999988 56899999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec--cCCCeeEEEEcCCCC
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--PQGRINRAVWGPLNR 159 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 159 (305)
+++++..+. +...+.+++|+|++..+++++. ++.+.+|++... .....+.. +...+.+++|+|+++
T Consensus 229 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----D~~v~lwd~~~~------~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSD-----DATCRLYDLRAD------REVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTT------EEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEECCCC------cEEEEEcCCCcccceeEEEEeCCCC
Confidence 999988887 7889999999999999988875 566777776432 23333332 334788999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
+|++|+.|+.|++||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++|+
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGSRVSILF---GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCcEEEEECCCCceEEEEE---CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999888876 8999999999999999999999999999996
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-36 Score=251.44 Aligned_cols=244 Identities=12% Similarity=0.015 Sum_probs=192.4
Q ss_pred EecccccceEEEEEcCC------CCEEEEeeCCCceEEEEcCCCee-----------eEEecCCCcceEEEEEcCCCcEE
Q 021925 5 LMKGHERPLTYLKYNKD------GDLLFSCAKDHTPTVWFADNGER-----------LGTYRGHNGAVWCCDVSRDSMTL 67 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~------~~~l~s~~~dg~v~iw~~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l 67 (305)
.+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++. ...+.+|...|.+++|++++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 35678899999999996 57999999999999999986632 24678899999999999864 89
Q ss_pred EEEeCCCcEEEEecCCCC-eeEEEe-eCCCceEE--EEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 68 ITGSADQTAKLWNVETGA-QLFTFN-FDSPARSV--DFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 68 ~s~~~dg~v~vwd~~~~~-~~~~~~-~~~~v~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
++|+.||+|++||+++++ ....+. +...|.++ .+++++ .++++++. ++.+++|++... +....+
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-----D~tvklWD~~~~------~~~~~~ 349 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-----DGYFYIFNPKDI------ATTKTT 349 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-----TSEEEEECGGGH------HHHCEE
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc-----CCeEEEEECCCC------Cccccc
Confidence 999999999999998764 344444 78899999 567777 77777764 677888887532 233344
Q ss_pred eccCC--CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 143 KGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 143 ~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
.+|.. .+.+++|+|+++.+++++.|+.|++||++++.++..+. +|...|++++|+|++++|++|+.||+|++||+
T Consensus 350 ~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 350 VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 55543 58899999999999999999999999999988877776 79999999999999999999999999999985
Q ss_pred CCc--------------------------------------------eEEEEEe-eCCCeeEEEecCCCC---cEEEeeC
Q 021925 221 RTL--------------------------------------------ELIKTYV-TERPVNAVTMSPLLD---HVCIGEP 252 (305)
Q Consensus 221 ~~~--------------------------------------------~~~~~~~-~~~~v~~~~~~~~~~---~l~~~~~ 252 (305)
... .++..+. |..+|.+++|+|+++ .+++|+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence 321 0111111 556789999999965 7888888
Q ss_pred CcEEEEEEeehhhhhh
Q 021925 253 QTIKFMLLVYLFVLFL 268 (305)
Q Consensus 253 ~~~~~~~~~~~~~~~~ 268 (305)
++. +++|.+..
T Consensus 507 ~g~-----vrlw~l~~ 517 (524)
T 2j04_B 507 AGL-----LTLEYLSL 517 (524)
T ss_dssp TSE-----EEEEECSC
T ss_pred Cce-----EEEEEccc
Confidence 887 66666543
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=254.67 Aligned_cols=241 Identities=12% Similarity=0.073 Sum_probs=190.8
Q ss_pred ccccceEEEEEcCCC---------CEEEE-------------------eeCCCceEEEEcCCCeee----EEecCCCcce
Q 021925 8 GHERPLTYLKYNKDG---------DLLFS-------------------CAKDHTPTVWFADNGERL----GTYRGHNGAV 55 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~---------~~l~s-------------------~~~dg~v~iw~~~~~~~~----~~~~~~~~~v 55 (305)
.+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++.. ..+..|.+.|
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V 210 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV 210 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence 367788899998876 56666 457889999999877642 3466788999
Q ss_pred EEEEEcCC------CcEEEEEeCCCcEEEEecCCCCee-----------EEEe-eCCCceEEEEecCCceEEEeCCccee
Q 021925 56 WCCDVSRD------SMTLITGSADQTAKLWNVETGAQL-----------FTFN-FDSPARSVDFAVGDKLAVITTDPFME 117 (305)
Q Consensus 56 ~~i~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~-----------~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~ 117 (305)
.+++|+|+ +.+||+++.||+|++||+.+++.. ..+. +...+.+++|++++ .+++++.
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~---- 285 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFK---- 285 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEET----
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeC----
Confidence 99999996 579999999999999999876421 2333 66889999999876 4555543
Q ss_pred eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE--EEcCCC-CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCc--c
Q 021925 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRA--VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--K 192 (305)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~ 192 (305)
++.+.+|++... ..+...+.+|...|.++ +|+|++ ++|++++.|++|++||+++++.+..+. +|. .
T Consensus 286 -DgtV~lWD~~~~-----~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~ 356 (524)
T 2j04_B 286 -NGFVAEFDLTDP-----EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGS 356 (524)
T ss_dssp -TSEEEEEETTBC-----SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCC
T ss_pred -CCEEEEEECCCC-----CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccC
Confidence 567788887532 23456688999999999 578887 899999999999999999887766554 343 3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
.|.+++|+|+++.+++++.|++|++||++++.++..+. |...|++++|+|+++.|++|+.|+. +++|+..
T Consensus 357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-----v~lwd~~ 427 (524)
T 2j04_B 357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-----LIITNAA 427 (524)
T ss_dssp SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-----EECCBSC
T ss_pred cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-----EEEEech
Confidence 47899999999999999999999999999998877666 8899999999999999999999998 6667653
No 78
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.1e-35 Score=238.56 Aligned_cols=208 Identities=9% Similarity=0.006 Sum_probs=166.6
Q ss_pred ccccceEEEEEcCCCCEEEE--eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 8 GHERPLTYLKYNKDGDLLFS--CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
.+...+.+++|||||+++++ ++.|++|+|||+++++.+..+. |.+.|.+++|+|||++|++++.+ .+.+|+..+++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 34556899999999998765 4478999999999999998887 78889999999999999998854 57777777777
Q ss_pred eeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 86 QLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 86 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
.+.... +...+.+++|+|++..+++++..... ...+..|+..... ........+.+|...|++++|+|+|++||
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGN--TSVLRSKQVTNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTE--EEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccce--ecceeeeeecCCCCCeEeEEECCCCCceE
Confidence 665433 55678999999999998887542210 0123333332211 11123456788999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+|+.|+.|+|||+++++++..+. .+|...|++++|+|||++|++||.|++|+|||+..
T Consensus 286 sgs~D~~V~iwd~~~~~~~~~~~--~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 286 LASNDNSIALVKLKDLSMSKIFK--QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSCEEEEETTTTEEEEEET--TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEcCCCEEEEEECCCCcEEEEec--CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999888753 27999999999999999999999999999999864
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-35 Score=242.11 Aligned_cols=247 Identities=15% Similarity=0.272 Sum_probs=204.4
Q ss_pred eEecccccceEEEEEcCC----CCEEEEeeCCCceEEEEcCCCeeeEEecC-----CCcceEEEEEcCC----CcEEEEE
Q 021925 4 ILMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRD----SMTLITG 70 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~i~~~~~----~~~l~s~ 70 (305)
....+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345689999999999984 45666677788999999998877666653 6678999999998 6799999
Q ss_pred eCCCcEEEEecCCCCeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE---ecc
Q 021925 71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGP 145 (305)
Q Consensus 71 ~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 145 (305)
+.||.|++||+++++.+..+. +...+.+++|+| ++..+++++. ++.+.+|++. ..+....+ .+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~------~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----DHALRLWNIQ------TDTLVAIFGGVEGH 160 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEETT------TTEEEEEECSTTSC
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEEee------cCeEEEEecccccc
Confidence 999999999999999998888 889999999999 8888888765 5567777764 23555666 689
Q ss_pred CCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec-------------------------cccCCccceEEEEEc
Q 021925 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAKA 200 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~ 200 (305)
...|.+++|+|++++|++++.||.|++||+++++....+. ....|...|.+++|+
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 9999999999999999999999999999999876544332 111388999999998
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceE--------------EEEEe-eCCCeeEEEecCC--CCcEEEeeCCcEEEEEEeeh
Q 021925 201 ADGSHFLTGSLDKSAKLWDARTLEL--------------IKTYV-TERPVNAVTMSPL--LDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 201 ~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~~~ 263 (305)
+++|++++.||.|++||+++++. +..+. +...|.+++|+|+ +++|++|+.++. +++
T Consensus 241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-----i~v 313 (366)
T 3k26_A 241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-----LYV 313 (366)
T ss_dssp --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-----EEE
T ss_pred --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-----EEE
Confidence 67999999999999999987643 55565 7788999999999 999999999987 555
Q ss_pred hhhhh
Q 021925 264 FVLFL 268 (305)
Q Consensus 264 ~~~~~ 268 (305)
|++..
T Consensus 314 wd~~~ 318 (366)
T 3k26_A 314 WDLEV 318 (366)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 55443
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.9e-35 Score=253.12 Aligned_cols=243 Identities=15% Similarity=0.189 Sum_probs=210.9
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----eeeEEecCCCcc-eEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGA-VWCCDVSR--DSMTLITGSADQTAKLW 79 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~-v~~i~~~~--~~~~l~s~~~dg~v~vw 79 (305)
..|.+.|++++|+|+|++|++++ ++.|++||+.++ +....+.+|.+. |.+++|+| ++++|++++.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46899999999999999999998 889999999998 889999999999 99999999 99999999999999999
Q ss_pred ecCCC--------CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925 80 NVETG--------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (305)
Q Consensus 80 d~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (305)
|+.++ +....+. +...+.+++|+|++..+++++..... ...+..|+ ..+....+.+|...|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d--------~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWD--------SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETT--------TCCEEEECCSCSSCEE
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEE--------CCCcceeeecCCccEE
Confidence 99754 4555555 78899999999999999888653110 12222222 2456778889999999
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc---ceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceE
Q 021925 151 RAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 151 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 225 (305)
+++|+|+++ .+++++.|+.|++||+++++.+..+. +|.. .|++++|+|+ +++|++++.||.|++||+++++.
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 241 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 241 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence 999999997 89999999999999999999888887 6777 9999999999 99999999999999999999999
Q ss_pred EEEE-----eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhh
Q 021925 226 IKTY-----VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 226 ~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (305)
+..+ .+..+|.+++|+ +++++++++.++. +++|+...
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-----i~~wd~~~ 283 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT-----IRVWDVTT 283 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE-----EEEEETTT
T ss_pred eEEecccccccCCceEEEEEc-CCCEEEEEcCCCc-----EEEEECCC
Confidence 9998 688899999999 9999999999987 55555543
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=237.74 Aligned_cols=242 Identities=14% Similarity=0.147 Sum_probs=196.2
Q ss_pred EecccccceEEEEEcCCCCEE-EEeeC---CCceEEEEcCCCeeeEEe-cCCCcceEEEEEcCC---CcEEEEEeCCCcE
Q 021925 5 LMKGHERPLTYLKYNKDGDLL-FSCAK---DHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRD---SMTLITGSADQTA 76 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l-~s~~~---dg~v~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~---~~~l~s~~~dg~v 76 (305)
.+.+|.+.|++++|+|+++.+ ++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +++|++++.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 467899999999999999655 45655 899999999988765443 368999999999998 6999999999999
Q ss_pred EEEecCCCC-eeEEEe-eCCCceEEEE------ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC-
Q 021925 77 KLWNVETGA-QLFTFN-FDSPARSVDF------AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG- 147 (305)
Q Consensus 77 ~vwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 147 (305)
++||+++++ .+..+. +...+.++.| +|++..+++++. ++.+.+|++... ......+..|.+
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----d~~i~vwd~~~~-----~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-----DGTVKVWDPRQK-----DDPVANMEPVQGE 162 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-----TSCEEEECTTSC-----SSCSEEECCCTTS
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-----CCeEEEEeCCCC-----CCcceeccccCCC
Confidence 999999887 777766 7888999965 578888888765 456667766432 124555655554
Q ss_pred ---CeeEEE----EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC---CCCEEEEEeCCCeEEE
Q 021925 148 ---RINRAV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---DGSHFLTGSLDKSAKL 217 (305)
Q Consensus 148 ---~i~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i 217 (305)
.+.+++ |+|+++++++++.||.|++||+++++..... .|...|.+++|+| ++.+|++++.||.|++
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 788888 7889999999999999999999998876554 4888999999999 9999999999999999
Q ss_pred EEcCCceEEEEE------eeCCCeeEEEecCCCC-cEEEeeCCcEEEEEE
Q 021925 218 WDARTLELIKTY------VTERPVNAVTMSPLLD-HVCIGEPQTIKFMLL 260 (305)
Q Consensus 218 wd~~~~~~~~~~------~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~ 260 (305)
||+++++++..+ .+...|.+++|+|+++ ++++|+.++...++.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 999987665443 3788999999999999 799999998744333
No 82
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-34 Score=235.75 Aligned_cols=238 Identities=19% Similarity=0.278 Sum_probs=199.6
Q ss_pred ecccccc--eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 6 MKGHERP--LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 6 l~~h~~~--v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
..+|... +.+++|++ ..+++++.||.|++||..+++....+.. |...|.+++|+|++++|++++.||.|++||++
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 3466655 44566664 5578888999999999999998877765 78999999999999999999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
+++.+..+. +...+.+++|+ +..+++++. ++.+.+|++.. .......+.+|...|.+++|+|++++|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-----dg~i~i~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l 232 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWN--RHVLSSGSR-----SGAIHHHDVRI-----ANHQIGTLQGHSSEVCGLAWRSDGLQL 232 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEE--TTEEEEEET-----TSEEEEEETTS-----SSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCeEEEEecCCCCceEEEEEC--CCEEEEEcC-----CCCEEEEeccc-----CcceeeEEcCCCCCeeEEEEcCCCCEE
Confidence 999888886 78899999994 456666654 45667777642 235677889999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe--CCCeEEEEEcCCceEEEEEeeCCCeeEE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAV 238 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 238 (305)
++++.||.|++||+++++.+..+. .|...|.+++|+|++. ++++++ .|+.|++||+++++++..+.+...+.++
T Consensus 233 ~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~ 309 (401)
T 4aez_A 233 ASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309 (401)
T ss_dssp EEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 999999999999999999888876 7899999999999765 555654 7999999999999999999988999999
Q ss_pred EecCCCCcEEEee--CCcEEEEEE
Q 021925 239 TMSPLLDHVCIGE--PQTIKFMLL 260 (305)
Q Consensus 239 ~~~~~~~~l~~~~--~~~~~~~~~ 260 (305)
+|+|+++.+++++ .++...++.
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEe
Confidence 9999999999953 677643333
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.9e-34 Score=256.12 Aligned_cols=237 Identities=19% Similarity=0.277 Sum_probs=205.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||++++
T Consensus 50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -CeeEEEe-eCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEcC--CC
Q 021925 85 -AQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGP--LN 158 (305)
Q Consensus 85 -~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~ 158 (305)
.....+. +...+.+++|+| ++..+++++. ++.+.+|++.. ......+.. +...+.+++|+| ++
T Consensus 130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (814)
T 3mkq_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDK 198 (814)
T ss_dssp SEEEEEEECCSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTC------SSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------CcceeEEecCCCCCEEEEEEEECCCC
Confidence 4445554 778899999999 7777777764 45667776532 233344444 448999999999 99
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeE
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~ 237 (305)
+++++++.||.|++||+++++.+..+. +|...|++++|+|++++|++++.||.|++||+.+++.+..+. +..++.+
T Consensus 199 ~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 275 (814)
T 3mkq_A 199 PYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275 (814)
T ss_dssp CEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEE
Confidence 999999999999999999999888887 788999999999999999999999999999999999998887 6789999
Q ss_pred EEecCCCCc--EEEeeCCcE
Q 021925 238 VTMSPLLDH--VCIGEPQTI 255 (305)
Q Consensus 238 ~~~~~~~~~--l~~~~~~~~ 255 (305)
++|+|+++. +++++.++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~ 295 (814)
T 3mkq_A 276 IATHPTGRKNYIASGFDNGF 295 (814)
T ss_dssp EEECTTCGGGEEEEEETTEE
T ss_pred EEEccCCCceEEEEEeCCCE
Confidence 999999974 555555543
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=242.84 Aligned_cols=240 Identities=13% Similarity=0.231 Sum_probs=191.2
Q ss_pred Eecccc------------cceEEEEEcCCC--CEEEEeeCCCceEEEEcCCCeee-------------------------
Q 021925 5 LMKGHE------------RPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGERL------------------------- 45 (305)
Q Consensus 5 ~l~~h~------------~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~~~~~------------------------- 45 (305)
.+.+|. +.|++++|+|++ ..|++++.||.|++||+.+++..
T Consensus 76 ~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (447)
T 3dw8_B 76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP 155 (447)
T ss_dssp EEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCC
T ss_pred ccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEec
Confidence 577898 889999999998 79999999999999998764432
Q ss_pred --------------EE-ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-CCeeEEE--------eeCCCceEEEE
Q 021925 46 --------------GT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTF--------NFDSPARSVDF 101 (305)
Q Consensus 46 --------------~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~--------~~~~~v~~~~~ 101 (305)
.. ..+|...|.+++|+|++++|++| .|+.|++||+++ ++....+ .+...+.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (447)
T 3dw8_B 156 VFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF 234 (447)
T ss_dssp EEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred cccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE
Confidence 12 36799999999999999999998 799999999984 4444433 36778999999
Q ss_pred ecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC------------CeeEEEEcCCCCEEEEeeCCC
Q 021925 102 AVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG------------RINRAVWGPLNRTIISAGEDA 168 (305)
Q Consensus 102 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg 168 (305)
+|++ ..+++++. ++.+.+|++..... .......+..|.. .|.+++|+|++++|++++. +
T Consensus 235 ~p~~~~~l~s~~~-----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~ 306 (447)
T 3dw8_B 235 HPNSCNTFVYSSS-----KGTIRLCDMRASAL--CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L 306 (447)
T ss_dssp CSSCTTEEEEEET-----TSCEEEEETTTCSS--SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred CCCCCcEEEEEeC-----CCeEEEEECcCCcc--ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence 9998 78887765 56777887754321 1122566677765 8999999999999999999 9
Q ss_pred cEEEEeCCC-CcEeeeeccccCCccc---------------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE---
Q 021925 169 IVRIWDTET-GKLLKESDKETGHKKT---------------ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--- 229 (305)
Q Consensus 169 ~i~iwd~~~-~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--- 229 (305)
.|++||+++ ++++..+. .|... +..++|+|++++|++|+.||.|++||+.+++.+...
T Consensus 307 ~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 383 (447)
T 3dw8_B 307 SVKVWDLNMENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR 383 (447)
T ss_dssp EEEEEETTCCSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCS
T ss_pred eEEEEeCCCCccccceee---ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecc
Confidence 999999997 77777776 44321 334899999999999999999999999988776422
Q ss_pred ------------------------------eeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 230 ------------------------------VTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 230 ------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
.....|.+++|+|++++|++|+.++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~ 440 (447)
T 3dw8_B 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLY 440 (447)
T ss_dssp TTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEE
T ss_pred cccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceee
Confidence 123468899999999999999988754
No 85
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.7e-35 Score=235.92 Aligned_cols=239 Identities=11% Similarity=0.059 Sum_probs=200.0
Q ss_pred ceEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEc-CCCeeeEEecC--CCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA-DNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
+..+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++.|++++.|+.|++
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~i 126 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEV 126 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEE
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEE
Confidence 345678999999999999999 9999999999999999 77654 77888 999999999999 999999999999999
Q ss_pred EecCC---------CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925 79 WNVET---------GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (305)
Q Consensus 79 wd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (305)
||+++ ++.+..+.+...+.+++|++++ +++++. .+.+.+|++... ...........|...+
T Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~-----d~~i~i~d~~~~---~~~~~~~~~~~~~~~i 196 (342)
T 1yfq_A 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMN-----NSQVQWFRLPLC---EDDNGTIEESGLKYQI 196 (342)
T ss_dssp ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEES-----TTEEEEEESSCC---TTCCCEEEECSCSSCE
T ss_pred EcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeC-----CCeEEEEECCcc---ccccceeeecCCCCce
Confidence 99987 7767677788899999999988 444433 345666766431 1112344556788899
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEeCCCC------cEeeeecccc------CCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925 150 NRAVWGP-LNRTIISAGEDAIVRIWDTETG------KLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAK 216 (305)
Q Consensus 150 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 216 (305)
.+++|+| +++++++++.||.|++||++.. +....+.... +|...|++++|+|++++|++++.||.|+
T Consensus 197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence 9999999 9999999999999999999876 5566665211 1234999999999999999999999999
Q ss_pred EEEcCCceEEEEEe-e-CCCeeEEEecCCCCcEEEeeCCcE
Q 021925 217 LWDARTLELIKTYV-T-ERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 217 iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+||+++++.+..+. + ..+|.+++ |++++|++|+.|+.
T Consensus 277 vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 277 CWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred EEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 99999999999887 5 88999999 99999999998873
No 86
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=257.98 Aligned_cols=240 Identities=14% Similarity=0.116 Sum_probs=195.9
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
....||.+.|++++|+|++++||+|+.||.|+||+..+.+....+. |..+|.+++|+| +++|++++.|++|++||+++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 3456899999999999999999999999999999998877765554 788999999999 88999999999999999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE-------EEEeccCCCeeEEEEcC
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-------LILKGPQGRINRAVWGP 156 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~ 156 (305)
++.+..+.+...+.+++|+|++.++++++. ++.+.+|++...... ...+ ..+.+|.+.|.+++|+|
T Consensus 89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~-----dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQ-----NGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp CSEEEEEECSSCEEEEECCTTCSEEEEEET-----TSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred CcEEEEEcCCCCEEEEEECCCCCEEEEEcC-----CCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEcc
Confidence 999999988899999999999999998875 566777776432110 0000 12367889999999999
Q ss_pred C-CCEEEEeeCCCcEEEEeCCCCcEeeeeccc---------------cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 157 L-NRTIISAGEDAIVRIWDTETGKLLKESDKE---------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 157 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
+ +..+++|+.||.| +||+++++.+..+... ..|...|++++|+|+|++|++++.||.|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 6 4789999999999 9999999888777522 123578999999999999999999999999999
Q ss_pred CCceEEEE--Ee-----------------eCCCeeEEEec----CCC-CcEEEeeCC
Q 021925 221 RTLELIKT--YV-----------------TERPVNAVTMS----PLL-DHVCIGEPQ 253 (305)
Q Consensus 221 ~~~~~~~~--~~-----------------~~~~v~~~~~~----~~~-~~l~~~~~~ 253 (305)
++++++.. +. +..+|.+++|+ |++ .++++|+.+
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 99988754 21 13469999995 444 456666554
No 87
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-34 Score=238.37 Aligned_cols=240 Identities=12% Similarity=0.121 Sum_probs=166.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-----EEecCCCcceEEEEEcC--------CCcEEEEEeCCCcE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSR--------DSMTLITGSADQTA 76 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~i~~~~--------~~~~l~s~~~dg~v 76 (305)
...+....+++++.+|++++.|++|+|||.++++.. ..+.+|.+.|.+++|+| |+++|++++.|++|
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 333344444556778999999999999999987643 34678999999999997 78999999999999
Q ss_pred EEEecCCCCeeEE-EeeCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCC-------------------
Q 021925 77 KLWNVETGAQLFT-FNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQG------------------- 135 (305)
Q Consensus 77 ~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 135 (305)
+|||++++..+.. ..+...+.+++|+|++. ++++++. ++.+.+|++........
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-----d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER-----NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC-----CCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 9999987765554 45889999999999875 5666544 45667776643221110
Q ss_pred CceEEEEeccCCCeeEEEEc-CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEE-----------------
Q 021925 136 GESVLILKGPQGRINRAVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL----------------- 197 (305)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~----------------- 197 (305)
........+|...+.++.|+ |+++.+++++.|+.+++||+..++....+. .|...+..+
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSC
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCccee
Confidence 01112345788899999987 799999999999999999998876655543 222222222
Q ss_pred -EEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925 198 -AKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 198 -~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 257 (305)
.++| ++.++++|+.||+|++||+.++++..... +..+|.+++|+|+|++||+++.++..+
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 2333 34467788899999999999998776655 888999999999999999999888543
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=221.43 Aligned_cols=244 Identities=17% Similarity=0.257 Sum_probs=205.3
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++.+ ++..+++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence 45688899999999999999999999999999999999999999999998887665 4669999999999999998876
Q ss_pred Cee-EEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-
Q 021925 85 AQL-FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI- 161 (305)
Q Consensus 85 ~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l- 161 (305)
... ..+. +...+..+.+.+++..++++.. ++.+.+|++..... ..........+.+.|.++.++|++..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEec-----CcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCCcEE
Confidence 543 3333 7888999999999999988765 56677777654321 223455667788999999999987533
Q ss_pred --EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceEEEEEe-eCCCee
Q 021925 162 --ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVN 236 (305)
Q Consensus 162 --~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~v~ 236 (305)
++++.++.|++||.+......... +...+..+.|+|++..+++++ .|+.|++||+++++++.++. |..+|+
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 366788999999999888777664 778899999999999887654 79999999999999999998 899999
Q ss_pred EEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 237 AVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
+++|+|++++|++|+.|+. +++|++
T Consensus 289 ~l~~spdg~~l~S~s~D~~-----v~iWd~ 313 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADET-----LRLWRC 313 (318)
T ss_dssp EEEECTTSSCEEEEETTTE-----EEEECC
T ss_pred EEEEcCCCCEEEEEecCCe-----EEEEEC
Confidence 9999999999999999998 666665
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=239.98 Aligned_cols=236 Identities=11% Similarity=0.120 Sum_probs=195.4
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcC---CCeeeEEecC------------CCcceEEEE--EcCCCcEEEEE
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---NGERLGTYRG------------HNGAVWCCD--VSRDSMTLITG 70 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---~~~~~~~~~~------------~~~~v~~i~--~~~~~~~l~s~ 70 (305)
+|.++|++++|+|++++|++|+.||.|++||++ +++....+.. +...+.++. +++++++|+++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 699999999999999999999999999999985 4544443321 455677777 56789999999
Q ss_pred eCCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-ccC
Q 021925 71 SADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQ 146 (305)
Q Consensus 71 ~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 146 (305)
+.||.|++||+++++.+..+. +...+.+++|+|++..+++++. ++.+.+|++.. .+.+..+. .|.
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~ 257 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-----RGIIDIWDIRF------NVLIRSWSFGDH 257 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-----TSCEEEEETTT------TEEEEEEBCTTC
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-----CCeEEEEEcCC------ccEEEEEecCCC
Confidence 999999999999999998887 4789999999999999998875 56677777743 45566665 788
Q ss_pred CCeeEEEEcC----CCCEEEEeeCCCcEEEEeCCCCcEeeeeccc---------------------cC--CccceEEEEE
Q 021925 147 GRINRAVWGP----LNRTIISAGEDAIVRIWDTETGKLLKESDKE---------------------TG--HKKTITSLAK 199 (305)
Q Consensus 147 ~~i~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------~~--~~~~v~~~~~ 199 (305)
..|.+++|+| ++++|++++.||.|++||+++++.+..+... .+ |...|++++|
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 8999996654 5779999999999999999999877766521 11 6778999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--------------------------------------eCCCeeEEEec
Q 021925 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV--------------------------------------TERPVNAVTMS 241 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------------~~~~v~~~~~~ 241 (305)
+ ++++|++|+.||.|++||+++++....+. |...|++++|+
T Consensus 338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~ 416 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTC 416 (437)
T ss_dssp E-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEE
T ss_pred C-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeee
Confidence 9 77899999999999999999887666554 67889999999
Q ss_pred CC--CCcEEEeeCCcE
Q 021925 242 PL--LDHVCIGEPQTI 255 (305)
Q Consensus 242 ~~--~~~l~~~~~~~~ 255 (305)
++ +.+|++|+.++.
T Consensus 417 ~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 417 EVDETPLLVACDNSGL 432 (437)
T ss_dssp ESSSSEEEEEEETTSC
T ss_pred ccCCceEEEEEcCCce
Confidence 98 778999999987
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=234.62 Aligned_cols=240 Identities=17% Similarity=0.180 Sum_probs=194.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe---eeEEecC-----------------------------------
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRG----------------------------------- 50 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~----------------------------------- 50 (305)
...++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp EECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 34689999999999976665 57899999999988 5555543
Q ss_pred -------------------CCcceEEEEEcCCCcEE-EEEeCCCcEEEEecC--CCCeeEEEe---eCCCceEEEEecCC
Q 021925 51 -------------------HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVE--TGAQLFTFN---FDSPARSVDFAVGD 105 (305)
Q Consensus 51 -------------------~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~--~~~~~~~~~---~~~~v~~~~~~~~~ 105 (305)
|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. +...+.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 33379999999999996 899999999999999 888877774 56889999999999
Q ss_pred ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcEee
Q 021925 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLLK 182 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~ 182 (305)
..++++.. .+.+..+++...... ......+.+|...|.+++|+|+ +++|++++.|+.|++||+++++.+.
T Consensus 162 ~~l~~~~~-----~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 162 TTVIIADK-----FGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp SEEEEEET-----TSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred CEEEEEeC-----CCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 99988864 344555554322111 1133356789999999999999 9999999999999999999988777
Q ss_pred eeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee--------------------------CCCee
Q 021925 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------------------------ERPVN 236 (305)
Q Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~v~ 236 (305)
.+. .+|...|++++|+ ++++|++++.|+.|++||+++++++..+.. ...|.
T Consensus 235 ~~~--~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 235 KWL--FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEC--CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eee--cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 632 2689999999999 999999999999999999999998887752 24688
Q ss_pred EEEecCCCCcEEEee-CCcEEEEE
Q 021925 237 AVTMSPLLDHVCIGE-PQTIKFML 259 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~-~~~~~~~~ 259 (305)
+++|+|++++|++++ .++...++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEE
Confidence 999999999999998 66663333
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.7e-33 Score=221.72 Aligned_cols=211 Identities=18% Similarity=0.272 Sum_probs=170.9
Q ss_pred eEecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEE
Q 021925 4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK 77 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~ 77 (305)
..+.+|.++|++++|+| ++++|++|+.||+|++||+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|+
T Consensus 47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126 (297)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence 35789999999999986 48999999999999999998874 56677889999999999997 88999999999999
Q ss_pred EEecCCCCe--eEEE-eeCCCceEEEEecC-------------CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925 78 LWNVETGAQ--LFTF-NFDSPARSVDFAVG-------------DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (305)
Q Consensus 78 vwd~~~~~~--~~~~-~~~~~v~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (305)
+||++++.. ...+ .+...+.+++|+|+ +..+++++. ++.+.+|++.... ........
T Consensus 127 ~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-----D~~v~lwd~~~~~--~~~~~~~~ 199 (297)
T 2pm7_B 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----DNLVKIWKYNSDA--QTYVLEST 199 (297)
T ss_dssp EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET-----TSCEEEEEEETTT--TEEEEEEE
T ss_pred EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC-----CCcEEEEEEcCCC--ceEEEEEE
Confidence 999987642 2233 37788999999997 356666654 5677888775321 11124567
Q ss_pred EeccCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925 142 LKGPQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (305)
Q Consensus 142 ~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 216 (305)
+.+|...|.+++|+|++ ++|++++.|++|++||+++... .........|...|.+++|+|++++|++++.||.|+
T Consensus 200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 88999999999999985 8999999999999999987431 111211135788999999999999999999999999
Q ss_pred EEEcC
Q 021925 217 LWDAR 221 (305)
Q Consensus 217 iwd~~ 221 (305)
+|+..
T Consensus 280 lw~~~ 284 (297)
T 2pm7_B 280 LWKEN 284 (297)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99976
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.9e-33 Score=231.41 Aligned_cols=237 Identities=23% Similarity=0.394 Sum_probs=199.1
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ..+++++.||.|++||++++
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC
Confidence 57799999999999 788999999999999999999999999999999999999974 49999999999999999988
Q ss_pred CeeE---EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 85 AQLF---TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 85 ~~~~---~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
+... ... +...+.++++ ++..+++++. ++.+.+|++. ..+.+..+.+|...+.++.++ +++
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-----dg~i~vwd~~------~~~~~~~~~~~~~~v~~~~~~--~~~ 308 (435)
T 1p22_A 244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-----DRTIKVWNTS------TCEFVRTLNGHKRGIACLQYR--DRL 308 (435)
T ss_dssp SCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-----TSEEEEEETT------TCCEEEEEECCSSCEEEEEEE--TTE
T ss_pred CCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-----CCeEEEEECC------cCcEEEEEcCCCCcEEEEEeC--CCE
Confidence 7653 222 6778888888 5666666654 4566777763 356788889999999999995 689
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---------EEEEEe-
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---------LIKTYV- 230 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~- 230 (305)
+++|+.||.|++||+++++.+..+. +|...|.+++| ++.+|++|+.||.|++||+++++ ++..+.
T Consensus 309 l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 383 (435)
T 1p22_A 309 VVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 383 (435)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred EEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC
Confidence 9999999999999999999998887 79999999999 67899999999999999998776 677776
Q ss_pred eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 231 TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 231 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
|..+|.+++| +++.|++|+.|+. +.+|++..+...
T Consensus 384 h~~~v~~l~~--~~~~l~s~s~Dg~-----i~iwd~~~~~~~ 418 (435)
T 1p22_A 384 HSGRVFRLQF--DEFQIVSSSHDDT-----ILIWDFLNDPAA 418 (435)
T ss_dssp CSSCCCCEEE--CSSCEEECCSSSE-----EEEEC-------
T ss_pred CCCCeEEEEe--CCCEEEEEeCCCE-----EEEEECCCCCCc
Confidence 8889999999 7788999999987 777776554433
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.5e-33 Score=224.90 Aligned_cols=230 Identities=8% Similarity=0.046 Sum_probs=178.6
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG 84 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~ 84 (305)
+.+|.+.|++++|+|||++|++|+.+| +++|+.++++....... ..+..+++.++++.+ ++++.|++|++||.+++
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 578999999999999999999988775 78999988776655442 247788888888777 56778899999999999
Q ss_pred CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE-
Q 021925 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS- 163 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~- 163 (305)
+.+..+.+...+.++.++++...+ +. ...+.+|++.... +.+..+.. ....+++++ ++++.
T Consensus 92 ~~~~~~~~~~~v~~v~~~~~~~~~--~~------~~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 92 QDVSRIKVDAPVKDLFLSREFIVV--SY------GDVISVFKFGNPW-----KRITDDIR---FGGVCEFSN--GLLVYS 153 (355)
T ss_dssp EEEEEEECSSCEEEEEECSSEEEE--EE------TTEEEEEESSTTC-----CBSSCCEE---EEEEEEEET--TEEEEE
T ss_pred cEEEEEECCCceEEEEEcCCEEEE--EE------cCEEEEEECCCCc-----eeeEEecc---CCceEEEEc--cEEEEe
Confidence 999999999999999998865333 22 3456777765431 11111111 333456666 56665
Q ss_pred -eeCCCcEEEEeCCCCc---------------E-eeeeccccCCccceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceE
Q 021925 164 -AGEDAIVRIWDTETGK---------------L-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLEL 225 (305)
Q Consensus 164 -~~~dg~i~iwd~~~~~---------------~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~ 225 (305)
|+.||.|++||+++++ + +..+. +|...|++++|+|+|++|++|+.||+ |++||++++++
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 6889999999999765 1 44454 89999999999999999999999998 99999999999
Q ss_pred EEEEe---eCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 226 IKTYV---TERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 226 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
+..+. |..+|.+++|+|++++|++++.|+...++
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 99997 78899999999999999999999873333
No 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-33 Score=232.65 Aligned_cols=235 Identities=18% Similarity=0.214 Sum_probs=191.8
Q ss_pred cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCe----eeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 021925 11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.....++++|+...++ +++.||.|+||++.+.. ....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 3455688888765444 57889999999986642 3456778999999999999 8999999999999999999987
Q ss_pred -------CeeEEEe-eCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE--eccCCCeeEEE
Q 021925 85 -------AQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAV 153 (305)
Q Consensus 85 -------~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~ 153 (305)
+.+..+. +...+.+++|+|++ .++++++. ++.+.+|++. ..+....+ ..|...|.+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~~------~~~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-----DNVILVWDVG------TGAAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----TSCEEEEETT------TTEEEEEECTTTCCSCEEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----CCEEEEEECC------CCCccEEEecCCCCCceEEEE
Confidence 5566666 88899999999998 57776654 4567777764 34566777 78999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcEeeee-ccccCCccc-eEEEEEcCCCCEEEEE---eCCCeEEEEEcCCceE-EE
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKT-ITSLAKAADGSHFLTG---SLDKSAKLWDARTLEL-IK 227 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~ 227 (305)
|+|++++|++++.||.|++||+++++.+..+ . .|... +.+++|+|++++|++| +.|+.|++||+++++. +.
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR---PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred ECCCCCEEEEEecCCcEEEEeCCCCceeeeecc---CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence 9999999999999999999999999988877 4 46554 8999999999999999 7899999999998754 33
Q ss_pred --EEeeCCCeeEEEecCCCCcEEEee-CCcEEEEE
Q 021925 228 --TYVTERPVNAVTMSPLLDHVCIGE-PQTIKFML 259 (305)
Q Consensus 228 --~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~~ 259 (305)
.+.+...+.+++|+|++++|++++ .++...++
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 334677899999999999997654 57763333
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-32 Score=227.97 Aligned_cols=235 Identities=24% Similarity=0.399 Sum_probs=200.6
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
.+|...|.++.+ +++++++|+.||.|++||..+++....+.+|.+.|.+++| ++++|++|+.||.|++||+++++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 356677988877 7899999999999999999999999999999999999999 678999999999999999999999
Q ss_pred eEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 87 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
+..+. +...+.++++++ ..+++++. ++.+.+|++.... .......+.+|...|.++++ +++++++|+
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~-----dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSK-----DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEET-----TSCEEEEECSSSS---CCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeC-----CCcEEEEeCCCCC---CceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 88887 778899999874 35555543 4567777765321 12334677899999999999 688999999
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCC
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL 244 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 244 (305)
.||.|++||+++++.+..+. +|...|.+++++ ++++++|+.||.|++||+++++++..+. |...|.+++| ++
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred CCCeEEEEECCcCcEEEEEc---CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 99999999999999998887 789999999984 6799999999999999999999999888 8889999999 78
Q ss_pred CcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 245 DHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
++|++|+.++. +++|++...
T Consensus 347 ~~l~sg~~dg~-----i~vwd~~~~ 366 (435)
T 1p22_A 347 KRIVSGAYDGK-----IKVWDLVAA 366 (435)
T ss_dssp SEEEEEETTSC-----EEEEEHHHH
T ss_pred CEEEEEeCCCc-----EEEEECCCC
Confidence 89999999987 566665443
No 96
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-33 Score=230.05 Aligned_cols=209 Identities=21% Similarity=0.393 Sum_probs=178.3
Q ss_pred EecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEe-----cCCCcceEEEEEcC-CCcEEEEEeCCCcEE
Q 021925 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTY-----RGHNGAVWCCDVSR-DSMTLITGSADQTAK 77 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~-----~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~ 77 (305)
.+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++++|++|+.||+|+
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 47799999999999996 457999999999999999999988877 67999999999987 889999999999999
Q ss_pred EEecC-CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-------CCC
Q 021925 78 LWNVE-TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-------QGR 148 (305)
Q Consensus 78 vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 148 (305)
+||++ .++.+..+. +...|.+++|+|++..+++++. ++.+.+|++.. ++.+..+..+ ...
T Consensus 232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----D~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD-----DGTCRLFDMRT------GHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS-----SSCEEEEETTT------TEEEEEECCCCSSSCCSSCS
T ss_pred EEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC-----CCeEEEEECCC------CcEEEEecccccccccccCc
Confidence 99998 446666665 8889999999999999999876 66777887643 2344444333 234
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
+++++|+|++++|++|+.||.|++||+.+++.+..+... .+|...|++++|+|+|++|++|+.||+|++|++...+
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 899999999999999999999999999998887766322 3789999999999999999999999999999998654
No 97
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-32 Score=256.02 Aligned_cols=209 Identities=21% Similarity=0.405 Sum_probs=178.2
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC--CCcEEEEEeCCCcEEEEecC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+|.+.|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++..+++++.||.|++||++
T Consensus 652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~ 731 (1249)
T 3sfz_A 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence 5789999999999999999999999999999999999999999999999999999999 55689999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-----------------------------
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA----------------------------- 132 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 132 (305)
+++.+..+. +...+.+++|+|++..+++++. ++.+.+|++.....
T Consensus 732 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSA-----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp SSSEEEEECCCSSCEEEEEECSSTTEEEEEES-----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred CcchhheecCCCCCEEEEEEecCCCEEEEEEC-----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 999888876 8889999999999998888765 33444444321100
Q ss_pred -------------------CCCCceEEE-EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCcc
Q 021925 133 -------------------DQGGESVLI-LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK 192 (305)
Q Consensus 133 -------------------~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 192 (305)
......... ..+|...+.+++|+|+++++++++.||.|++||+.++..+..+. +|..
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~ 883 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLS 883 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSS
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCcc
Confidence 001112222 23788999999999999999999999999999999999888887 7889
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
.|++++|+|+++.|++++.||.|++||+.
T Consensus 884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 99999999999999999999999999854
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-32 Score=238.24 Aligned_cols=238 Identities=14% Similarity=0.175 Sum_probs=204.2
Q ss_pred eEecccccc-eEEEEEcC--CCCEEEEeeCCCceEEEEcCCC--------eeeEEecCCCcceEEEEEcCCCcEEEEEeC
Q 021925 4 ILMKGHERP-LTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--------ERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72 (305)
Q Consensus 4 ~~l~~h~~~-v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~ 72 (305)
..+.+|.+. |++++|+| ++++|++|+.||.|++||+.++ +.+..+..|..+|.+++|+|++++|++++.
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence 357899999 99999999 9999999999999999999754 677788889999999999999999999998
Q ss_pred C----CcEEEEecCCCCeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC
Q 021925 73 D----QTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (305)
Q Consensus 73 d----g~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
+ +.|.+|| .++.+..+. +...+.+++|+|++. .+++++. ++.+.+|+. ...+....+.+|.
T Consensus 137 ~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~v~vwd~------~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 137 GRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-----DGSVVFYQG------PPFKFSASDRTHH 203 (615)
T ss_dssp CSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-----TTEEEEEET------TTBEEEEEECSSS
T ss_pred CCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeC-----CCcEEEEeC------CCcceeeeecccC
Confidence 7 6888888 556666665 788999999999997 5665544 456666764 3346677888899
Q ss_pred C---CeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCcEeeee-ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 147 G---RINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 147 ~---~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .....|...|.+++|+ ++++|++++.||.|++||++
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 9 9999999999 999999999999999999999988877 2111488999999999 99999999999999999999
Q ss_pred CceEEEEEeeC-----CCeeEEEecCCCCcEEEeeCCcEE
Q 021925 222 TLELIKTYVTE-----RPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 222 ~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
+++.+..+... ..+.++.|. +++++++++.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTL 321 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred CCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCE
Confidence 99999888743 567888885 88999999998873
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=229.03 Aligned_cols=233 Identities=14% Similarity=0.101 Sum_probs=193.2
Q ss_pred cccccceEEEEEcCCCCEE-EEeeCCCceEEEEcC--CCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 7 KGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFAD--NGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~--~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
.+|.+.|++++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++++|++++.||.+++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4677889999999999996 889999999999999 888888776 57789999999999999999999999999999
Q ss_pred CCCCeeE----EE-eeCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-EeccCCCeeEE
Q 021925 82 ETGAQLF----TF-NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA 152 (305)
Q Consensus 82 ~~~~~~~----~~-~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 152 (305)
.+++... .+ .+...+.+++|+|+ +.++++++. ++.+.+|++.. .+.+.. +.+|...|.++
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----DEHIKISHYPQ------CFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----TSCEEEEEESC------TTCEEEECCCCSSCEEEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----CCcEEEEECCC------CceeeeeecCCCCceEEE
Confidence 8876543 33 37789999999999 888888765 56778888743 344444 56899999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecccc----------------------CCccceEEEEEcCCCCEEEEEe
Q 021925 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----------------------GHKKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~l~~~~ 210 (305)
+|+ ++++|++++.|+.|++||+++++.+..+.... .....|.+++|+|++++|++++
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 999 99999999999999999999999887775210 2345789999999999999999
Q ss_pred -CCCeEEEEEc--CCc---eEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 211 -LDKSAKLWDA--RTL---ELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 211 -~dg~i~iwd~--~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
.|+.|++||+ .++ +.+..+.....|.+++|+|++.++++++
T Consensus 327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp TTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred CCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence 8999999999 555 6677777568899999999654444333
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-31 Score=222.80 Aligned_cols=234 Identities=23% Similarity=0.414 Sum_probs=201.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|.+.|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.||.|++||++++
T Consensus 154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 477999999999998 5699999999999999999999999999999999999996 558999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+.+..+. +...+.++.+ ++..+++++. ++.+.+|++.. .+....+.+|...|.++++ +++++++
T Consensus 230 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~--~~~~l~~ 294 (445)
T 2ovr_B 230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAY-----DFMVKVWDPET------ETCLHTLQGHTNRVYSLQF--DGIHVVS 294 (445)
T ss_dssp CEEEEEECCSSCEEEEEE--CSSCEEEEET-----TSCEEEEEGGG------TEEEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred cEEEEEcCCcccEEEEEE--CCCEEEEEcC-----CCEEEEEECCC------CcEeEEecCCCCceEEEEE--CCCEEEE
Confidence 9888877 7788899888 5666666654 45667776543 4667788899999999999 7889999
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEE
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVT 239 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~ 239 (305)
++.||.|++||+++++.+..+. +|...+.++.++ +++|++++.||.|++||+++++++..+. +..+|.+++
T Consensus 295 ~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 369 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence 9999999999999999998887 788889888874 6699999999999999999999998886 677899999
Q ss_pred ecCCCCcEEEeeCCcEEEEEEeehhhhhhh
Q 021925 240 MSPLLDHVCIGEPQTIKFMLLVYLFVLFLD 269 (305)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
|+ ++++++|+.++. +++|+....
T Consensus 370 ~~--~~~l~s~~~dg~-----v~iwd~~~~ 392 (445)
T 2ovr_B 370 FN--KNFVITSSDDGT-----VKLWDLKTG 392 (445)
T ss_dssp EC--SSEEEEEETTSE-----EEEEETTTC
T ss_pred EC--CCEEEEEeCCCe-----EEEEECCCC
Confidence 96 578999999987 555655433
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-32 Score=222.56 Aligned_cols=214 Identities=19% Similarity=0.294 Sum_probs=175.3
Q ss_pred EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCC---------eeeEEecCCCcceEEEEEcCC--CcEEEEEe
Q 021925 5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITGS 71 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~ 71 (305)
.+.+|.++|++++|+| ++++|++|+.||.|++||+.++ +.+..+..|.+.|.+++|+|+ +++|++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 3678999999999999 6999999999999999999887 567888899999999999999 99999999
Q ss_pred CCCcEEEEecCCCCeeEEE--------------eeCCCceEEEEecC---CceEEEeCCcceeeeeeEEEEEeecccCCC
Q 021925 72 ADQTAKLWNVETGAQLFTF--------------NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQ 134 (305)
Q Consensus 72 ~dg~v~vwd~~~~~~~~~~--------------~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (305)
.||.|++||+++++.+..+ .+...+.+++|+|+ +..++++.... .+..+... ..
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~----~~ 202 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGK----DG 202 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECT----TS
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccC----CC
Confidence 9999999999888754332 24567899999996 77777776532 22222211 11
Q ss_pred CCceEEEEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCC--------------------------------
Q 021925 135 GGESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETG-------------------------------- 178 (305)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~-------------------------------- 178 (305)
.......+.+|...|.+++|+|++ ++|++++.||.|++||++.+
T Consensus 203 ~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
T 3f3f_A 203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282 (351)
T ss_dssp CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence 223466778899999999999998 89999999999999999865
Q ss_pred --------------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 179 --------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 179 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+.+..+. +|...|++++|+|++++|++++.||.|++||+.+++....+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 283 NTEEKAELQSNLQVELLSEHD---DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp --------CCSEEEEEEEEEC---TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ccceeeeecccccccEEEEEe---cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 3333343 789999999999999999999999999999999876655443
No 102
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-31 Score=223.88 Aligned_cols=230 Identities=25% Similarity=0.387 Sum_probs=201.6
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
.+.+|...|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.+++| +++++++++.||.|++||++++
T Consensus 194 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 269 (445)
T 2ovr_B 194 TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE 269 (445)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence 477899999999996 568999999999999999999999999999999999999 6789999999999999999999
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
+.+..+. +...+.++.+ ++..+++++. ++.+.+|++. ..+.+..+.+|...+.++.++ ++++++
T Consensus 270 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-----d~~i~i~d~~------~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 334 (445)
T 2ovr_B 270 TCLHTLQGHTNRVYSLQF--DGIHVVSGSL-----DTSIRVWDVE------TGNCIHTLTGHQSLTSGMELK--DNILVS 334 (445)
T ss_dssp EEEEEECCCSSCEEEEEE--CSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCCSCEEEEEEE--TTEEEE
T ss_pred cEeEEecCCCCceEEEEE--CCCEEEEEeC-----CCeEEEEECC------CCCEEEEEcCCcccEEEEEEe--CCEEEE
Confidence 9888887 7788999988 6677776654 4566777763 346778888999999888875 679999
Q ss_pred eeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE------eeCCCeeE
Q 021925 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY------VTERPVNA 237 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~ 237 (305)
|+.||.|++||+++++.+..+.....|...|++++|+ +++|++|+.||.|++||+++++.+..+ .+...|.+
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 9999999999999999998887555588999999996 579999999999999999999999888 36778999
Q ss_pred EEecCCCCcEEEeeCCcE
Q 021925 238 VTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~ 255 (305)
++|+|++.++++|+.++.
T Consensus 413 ~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEECSSEEEEEEECSSSS
T ss_pred EEecCCEEEEEEcccCCC
Confidence 999999999999998885
No 103
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=251.53 Aligned_cols=254 Identities=12% Similarity=0.114 Sum_probs=184.3
Q ss_pred ecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecCC------------------CcceEEEEEcCCCcE
Q 021925 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGH------------------NGAVWCCDVSRDSMT 66 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~ 66 (305)
+.+|.++|++++|+|+ +..+++|+.||.| +||+++++.+..+..| ...|.+++|+|+|++
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 4789999999999995 5789999999999 9999999988888765 477999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCeeEEEe-------------------eCCCceEEEEec----CC-ceEEEeCCc------ce
Q 021925 67 LITGSADQTAKLWNVETGAQLFTFN-------------------FDSPARSVDFAV----GD-KLAVITTDP------FM 116 (305)
Q Consensus 67 l~s~~~dg~v~vwd~~~~~~~~~~~-------------------~~~~v~~~~~~~----~~-~~~~~~~~~------~~ 116 (305)
|++++.||+|++||+++++++.... +...|.+++|++ ++ .++++++.. ..
T Consensus 226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v 305 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL 305 (902)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence 9999999999999999988775421 123688999965 33 345554221 11
Q ss_pred -eee----------------------------------------------------------------eeEEEEEeeccc
Q 021925 117 -ELN----------------------------------------------------------------SAIHVKRIARDP 131 (305)
Q Consensus 117 -~~~----------------------------------------------------------------~~~~~~~~~~~~ 131 (305)
.+. +.+..|++....
T Consensus 306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence 000 001111110000
Q ss_pred CCCC-----------CceE------------------------EEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925 132 ADQG-----------GESV------------------------LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176 (305)
Q Consensus 132 ~~~~-----------~~~~------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 176 (305)
.... ...+ ..+.+|...+.+++|+|++++|++|+.|++|++||+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~ 465 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS 465 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence 0000 0000 0123444455566778999999999999999999998
Q ss_pred CCcEee--eecc------ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce------------------------
Q 021925 177 TGKLLK--ESDK------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE------------------------ 224 (305)
Q Consensus 177 ~~~~~~--~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------------------ 224 (305)
++.... .+.. ..+|...|++++|+|++++||+|+.||+|++||+.+++
T Consensus 466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 874211 1110 01688899999999999999999999999999998662
Q ss_pred ---------------------EEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 225 ---------------------LIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 225 ---------------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
++..+. |..+|++++|+|+| +||+|+.|+. +++|+.
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t-----v~lwd~ 603 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS-----LMLIDR 603 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSE-----EEEEET
T ss_pred CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc-----EEEEEC
Confidence 355565 88999999999999 9999999997 455554
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.6e-33 Score=220.47 Aligned_cols=206 Identities=20% Similarity=0.283 Sum_probs=167.0
Q ss_pred EecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCCC--eeeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v 78 (305)
.+.+|.++|++++|+| ++++|++|+.|++|++||++++ +....+.+|...|.+++|+|+ +.+|++++.||+|++
T Consensus 52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 4789999999999986 4899999999999999999887 356678899999999999997 789999999999999
Q ss_pred EecCCCCeeEE---E-eeCCCceEEEEecCC-----------------ceEEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925 79 WNVETGAQLFT---F-NFDSPARSVDFAVGD-----------------KLAVITTDPFMELNSAIHVKRIARDPADQGGE 137 (305)
Q Consensus 79 wd~~~~~~~~~---~-~~~~~v~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (305)
||++++..... + .+...+.+++|+|+. ..+++++. ++.+++|+.... ...+
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-----D~~v~lWd~~~~---~~~~ 203 (316)
T 3bg1_A 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC-----DNLIKLWKEEED---GQWK 203 (316)
T ss_dssp EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT-----TSBCCEEEECTT---SCEE
T ss_pred EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC-----CCeEEEEEeCCC---Cccc
Confidence 99987643221 1 156788899999873 45665544 556777776321 1113
Q ss_pred eEEEEeccCCCeeEEEEcCCC----CEEEEeeCCCcEEEEeCCCCc----EeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925 138 SVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGK----LLKESDKETGHKKTITSLAKAADGSHFLTG 209 (305)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 209 (305)
....+.+|...|.+++|+|++ ++|++++.||+|++||+++.. ....+. .|...|.+++|+|++++|+++
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEE
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEE
Confidence 556678999999999999986 789999999999999997631 112232 578899999999999999999
Q ss_pred eCCCeEEEEEcC
Q 021925 210 SLDKSAKLWDAR 221 (305)
Q Consensus 210 ~~dg~i~iwd~~ 221 (305)
+.||+|++|+..
T Consensus 281 ~~D~~v~lw~~~ 292 (316)
T 3bg1_A 281 GGDNKVTLWKES 292 (316)
T ss_dssp ESSSCEEEEEEC
T ss_pred cCCCeEEEEEEC
Confidence 999999999976
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.4e-31 Score=220.66 Aligned_cols=240 Identities=17% Similarity=0.298 Sum_probs=190.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
++.|+||++ +.||+|. |++|+|||..+++....+. +|...|++++|+|+|++|++|+.||.|++||+++++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 677999976 4777765 9999999999998877654 67788999999999999999999999999999999988887
Q ss_pred e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925 91 N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (305)
Q Consensus 91 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 169 (305)
. +...+.++.+ ++..+++++. +..+..++.. .....+..+.+|...+..+.++|+++++++++.|+.
T Consensus 186 ~~h~~~v~~~s~--~~~~l~sgs~-----d~~i~~~d~~-----~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~ 253 (420)
T 4gga_A 186 TSHSARVGSLSW--NSYILSSGSR-----SGHIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253 (420)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEET-----TSEEEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eCCCCceEEEee--CCCEEEEEeC-----CCceeEeeec-----ccceeeEEecccccceeeeeecCCCCeeeeeecccc
Confidence 7 6666766665 4567776654 3444455443 233567788999999999999999999999999999
Q ss_pred EEEEeCCCCcEee-eeccccCCccceEEEEEcCCCC-EEEE--EeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925 170 VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGS-HFLT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 170 i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 245 (305)
+++||..+++... .+.....|...|.+++|+|++. .+++ |+.|++|++||+++++++..+.....+.++.|+|+++
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~ 333 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 333 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTT
T ss_pred ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCC
Confidence 9999998765321 1112236889999999999654 4554 4579999999999999999999888999999999999
Q ss_pred cEEEee--CCcEEEEEEeehhhhhhhhh
Q 021925 246 HVCIGE--PQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 246 ~l~~~~--~~~~~~~~~~~~~~~~~~~~ 271 (305)
.+++++ .++. +++|+......
T Consensus 334 ~lv~~sg~~d~~-----I~iwd~~~~~~ 356 (420)
T 4gga_A 334 ELISGHGFAQNQ-----LVIWKYPTMAK 356 (420)
T ss_dssp EEEEEECTTTCC-----EEEEETTTCCE
T ss_pred eEEEEEecCCCE-----EEEEECCCCcE
Confidence 988875 4555 55665544333
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=225.58 Aligned_cols=232 Identities=9% Similarity=0.080 Sum_probs=183.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------------------------eeEEec-CCCcceEE
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------------------------RLGTYR-GHNGAVWC 57 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----------------------------~~~~~~-~~~~~v~~ 57 (305)
.-...|.+++|+|||+++|+++.|++|+ |...++ ....+. .|...|.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~ 90 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV 90 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence 4467899999999999999999999995 433322 111222 46788999
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC-----CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925 58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132 (305)
Q Consensus 58 i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (305)
++|+|+|.+||+++.||.|++||.++ ++..+.+.. .+.+++|+|+++++++++. ++.+.+|++.....
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-----DGtVkIWd~~~~~l 163 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-----DGELQFFSIRKNSE 163 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-----TSEEEEEECCCCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC-----CCEEEEEECCCCcc
Confidence 99999999999999999999999644 555545333 4999999999999999987 77788888764211
Q ss_pred CCC-CceEEEE----eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe---eeeccccCCccceEEEEEcCCCC
Q 021925 133 DQG-GESVLIL----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAKAADGS 204 (305)
Q Consensus 133 ~~~-~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 204 (305)
.+. .-.+..+ .+|...|.+++|+|+| +++++.|+.|++||+..++.. +.+. .+|...|.+++|+ |+
T Consensus 164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DY 237 (588)
T ss_dssp TCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TT
T ss_pred ccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CC
Confidence 000 0134555 6677899999999999 888999999999999887632 3342 1577899999999 68
Q ss_pred EEEEEeCCCeEEEEEcCCceE-EEEEeeCCCeeEEEe--cCCCCcEEEeeCCcE
Q 021925 205 HFLTGSLDKSAKLWDARTLEL-IKTYVTERPVNAVTM--SPLLDHVCIGEPQTI 255 (305)
Q Consensus 205 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~~ 255 (305)
.||+++ +++|++||+.+++. ...+.|...+.+++| +|++..+++++.+|.
T Consensus 238 ~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 899887 69999999998887 444468899999999 999999999998887
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-32 Score=224.44 Aligned_cols=225 Identities=10% Similarity=0.109 Sum_probs=177.4
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc-----ceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
+|...|.+++|||+|+.||+++.||.|++||.++ .+..+. |.. .|.+++|+|||++|++|+.||+|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 6788899999999999999999999999999543 666667 665 49999999999999999999999999999
Q ss_pred CCCe-------eEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCe
Q 021925 83 TGAQ-------LFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRI 149 (305)
Q Consensus 83 ~~~~-------~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 149 (305)
++.. +..+. +...|.+++|+|++ +++++. +..+++|++.... ..+....+ .+|...|
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~------D~tVrlWd~~~~~---~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS------NNSVFSMTVSASS---HQPVSRMIQNASRRKI 229 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET------TCCEEEECCCSSS---SCCCEEEEECCCSSCC
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC------CCeEEEEECCCCc---cccceeeecccccCcE
Confidence 8753 45553 34699999999999 555444 5666777664321 11123455 4788999
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE--cCCCCEEEEEeCCCeEEEEEcCCc----
Q 021925 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL---- 223 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~---- 223 (305)
.+++|+ ++.||+++ ++.|++||+.+++...... +|...+..++| +|++..|++++.||+ ++|.....
T Consensus 230 ~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~---gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~sp 302 (588)
T 2j04_A 230 TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT---GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTA 302 (588)
T ss_dssp CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC---SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEEC
T ss_pred EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc---CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECC
Confidence 999999 68899887 6999999999877644333 69999999999 999999999999999 99987421
Q ss_pred -------------------eEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925 224 -------------------ELIKTYVTERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 224 -------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+.+..+.+...|.+++|+|||+.+|+++.
T Consensus 303 d~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 11122223334899999999999998864
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=218.03 Aligned_cols=214 Identities=17% Similarity=0.265 Sum_probs=178.3
Q ss_pred EecccccceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v 78 (305)
.+.+|.++|++++|+|+ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ +++|++++.||.|++
T Consensus 50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence 57899999999999987 9999999999999999999987 77788889999999999998 999999999999999
Q ss_pred EecCCCCeeE--EE-eeCCCceEEEEec-------------CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 79 WNVETGAQLF--TF-NFDSPARSVDFAV-------------GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 79 wd~~~~~~~~--~~-~~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
||++++.... .+ .+...+.+++|+| ++..+++++. ++.+.+|++.... ........+
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~--~~~~~~~~~ 202 (379)
T 3jrp_A 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----DNLVKIWKYNSDA--QTYVLESTL 202 (379)
T ss_dssp EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET-----TSCEEEEEEETTT--TEEEEEEEE
T ss_pred EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC-----CCeEEEEEecCCC--cceeeEEEE
Confidence 9998874332 22 3788999999999 5787877765 4567778776432 112355677
Q ss_pred eccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 143 KGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
.+|...|.+++|+|+ +++|++++.||.|++||++++.. .........|...|++++|+|++++|++++.||.|++
T Consensus 203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282 (379)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence 889999999999999 89999999999999999998642 1122222358889999999999999999999999999
Q ss_pred EEcCCceE
Q 021925 218 WDARTLEL 225 (305)
Q Consensus 218 wd~~~~~~ 225 (305)
||++....
T Consensus 283 w~~~~~~~ 290 (379)
T 3jrp_A 283 WKENLEGK 290 (379)
T ss_dssp EEEEETTE
T ss_pred EeCCCCCc
Confidence 99985533
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=221.53 Aligned_cols=219 Identities=9% Similarity=0.007 Sum_probs=174.8
Q ss_pred EcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC---------CCCeeE
Q 021925 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE---------TGAQLF 88 (305)
Q Consensus 18 ~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~---------~~~~~~ 88 (305)
+.++++.+++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 34578899999999999999999999888876 567888889988 9999999999999655 555455
Q ss_pred EEe--eCCCceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEEE
Q 021925 89 TFN--FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 89 ~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~ 163 (305)
... +...+.+++++| ++.++++++. ++.+.+|++.. .+..... ..+...+.+++|+|++++|++
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~~wd~~~------~~~~~~~~~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADN-----RGTIGFQSYED------DSQYIVHSAKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEET-----TCCEEEEESSS------SCEEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeC-----CCcEEEEECCC------CcEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 554 447799999999 9999987765 56677777643 2334444 345668999999999999999
Q ss_pred eeCCCcEEEEeCCCCcEe-eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCee--
Q 021925 164 AGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVN-- 236 (305)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~-- 236 (305)
|+.||.|++||+++++.+ ..+.. +|..+|++++|+|++.+|++++ |+.|++||+++++.+..+. +..++.
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred EcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence 999999999999998877 66651 3899999999999999999999 5599999999887665443 223343
Q ss_pred EEEecCCCCcEEEeeC-CcE
Q 021925 237 AVTMSPLLDHVCIGEP-QTI 255 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~-~~~ 255 (305)
+++|+|++++|++++. ++.
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~ 284 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNS 284 (343)
T ss_dssp EEEECTTSSEEEEEETTTTE
T ss_pred EEEECCCCCEEEEecCCCCc
Confidence 6999999999999877 665
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.6e-30 Score=216.63 Aligned_cols=239 Identities=11% Similarity=0.025 Sum_probs=199.3
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETG 84 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~ 84 (305)
+.+|.+.|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.++ +++.|+.|++||++++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 458899999999999999999999999999999999999999998999999999999998885 5557999999999999
Q ss_pred CeeEEEeeCCCceEEEEecCCceEEEeCCccee---eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
+.+..+.....+.+++++|++..++++...... .++.+.++++.. .+... ...+...+.+++|+|+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~~~~-~~~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK------EKLID-TIGPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT------TEEEE-EEEEEECEEEEEECSSTTEE
T ss_pred cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC------CcEEe-eccCCCCcceEEECCCCCEE
Confidence 988888877789999999999888776531111 134555665532 22332 33556688999999999755
Q ss_pred -EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC---------------CCeEEEEEcCCceE
Q 021925 162 -ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------------DKSAKLWDARTLEL 225 (305)
Q Consensus 162 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~ 225 (305)
++++.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 566889999999999998887775 6678999999999999888876 57999999999999
Q ss_pred EEEEeeCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925 226 IKTYVTERPVNAVTMSPLLDHVCIGEP-QTI 255 (305)
Q Consensus 226 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~ 255 (305)
+..+.....+.+++|+|++++|++++. ++.
T Consensus 394 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 394 KEFWEAGNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp EEEEECSSSEEEEEECTTSCEEEEEETTTTE
T ss_pred EEEecCCCCCceEEEcCCCCEEEEEECCCCe
Confidence 999887788999999999999998875 665
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=5.9e-30 Score=210.36 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=194.4
Q ss_pred ecccccceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEE-EeCCCcEEEEecCC
Q 021925 6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVET 83 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg~v~vwd~~~ 83 (305)
+.+| ..+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+. ++.++.|++||+.+
T Consensus 28 ~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~ 105 (391)
T 1l0q_A 28 IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS 105 (391)
T ss_dssp EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence 4445 458999999999977 667789999999999999998888555 8999999999998754 55679999999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEE-EeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI- 161 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l- 161 (305)
++.+..+.....+.+++|+|+++.++ ++.. .+.+.+|++. ..+....+..+ ..+.+++|+|+++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-----DKTVSVINTV------TKAVINTVSVG-RSPKGIAVTPDGTKVY 173 (391)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEETT-----TTEEEEEETT------TTEEEEEEECC-SSEEEEEECTTSSEEE
T ss_pred CeEEEEEeCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEECC------CCcEEEEEecC-CCcceEEECCCCCEEE
Confidence 99998888888899999999998774 4443 3455666553 23445555544 456999999999887
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceEEEEEeeCCCeeEE
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYVTERPVNAV 238 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 238 (305)
++++.++.|++||+++++....+. +...+.+++|+|++++|++++ .++.|++||+++++.+..+.....+.++
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 249 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI 249 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence 567788999999999998887775 566889999999999999888 6899999999999999888876778999
Q ss_pred EecCCCCcEEEe-eCCcEEEEEEeehhhhhh
Q 021925 239 TMSPLLDHVCIG-EPQTIKFMLLVYLFVLFL 268 (305)
Q Consensus 239 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 268 (305)
+|+|+++.++++ +.++. +++|+...
T Consensus 250 ~~s~dg~~l~~s~~~d~~-----v~v~d~~~ 275 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXNT-----VSVIDTAT 275 (391)
T ss_dssp EECTTSSEEEEEETTTTE-----EEEEETTT
T ss_pred EEccCCCEEEEEcCCCCE-----EEEEECCC
Confidence 999999988554 55665 55555543
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=214.42 Aligned_cols=230 Identities=9% Similarity=-0.013 Sum_probs=179.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcC---------CCeeeEEec-CCCcceEEEEEcC--CCcEEEEEeCCCcEE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAK 77 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~---------~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~dg~v~ 77 (305)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. +|.++|.+++|+| +++++++++.||+|+
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 356777788887 9999999999999665 445444444 6778999999999 999999999999999
Q ss_pred EEecCCCCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE-EEEec-cCCCeeEEE
Q 021925 78 LWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKG-PQGRINRAV 153 (305)
Q Consensus 78 vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~ 153 (305)
+||+++++...... +...+.+++|+|++.++++++. ++.+.+|++... +.. ..+.. |.+.|.+++
T Consensus 153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~-----dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~ 221 (343)
T 3lrv_A 153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP-----DGILDVYNLSSP------DQASSRFPVDEEAKIKEVK 221 (343)
T ss_dssp EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT-----TSCEEEEESSCT------TSCCEECCCCTTSCEEEEE
T ss_pred EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC-----CCEEEEEECCCC------CCCccEEeccCCCCEEEEE
Confidence 99999998876653 4557999999999999998765 567888887532 333 55666 999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE--EEEEcCCCCEEEEEeC-CCeEEEEEcCCceEEEEEe
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT--SLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 230 (305)
|+|++.+|++++ |+.|++||+++++.+..+.....|...+. +++|+|++++|++++. |+.+++|++.+.......
T Consensus 222 fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 222 FADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp ECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred EeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence 999999999999 55999999999887766653323434444 6999999999999998 999999999765433322
Q ss_pred eCCCeeEEEecC---CCCcEEEeeCCcEEE
Q 021925 231 TERPVNAVTMSP---LLDHVCIGEPQTIKF 257 (305)
Q Consensus 231 ~~~~v~~~~~~~---~~~~l~~~~~~~~~~ 257 (305)
.++..++|.| +.+.+++++.++...
T Consensus 300 --~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 300 --DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp --EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred --cCceeEecCccccccceeEEEecCCceE
Confidence 5577888888 888888888887643
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.8e-30 Score=205.47 Aligned_cols=242 Identities=16% Similarity=0.272 Sum_probs=189.1
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
.++|+||+++ +||+| .|++|+|||+++++.+..+. +|...|.+++|+|++++|++|+.||+|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999986 77765 59999999999999887665 67888999999999999999999999999999999988887
Q ss_pred e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925 91 N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (305)
Q Consensus 91 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 169 (305)
. +...+. .+++++..++++... .....+... .....+..+.+|...+..+.++++++++++++.||.
T Consensus 106 ~~h~~~~~--~~~~~~~~l~s~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 106 TSHSARVG--SLSWNSYILSSGSRS-----GHIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp ECCSSCEE--EEEEETTEEEEEETT-----SEEEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cCccceEE--EeecCCCEEEEEecC-----CceEeeecC-----CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence 7 444444 455566677766542 223333322 234567788899999999999999999999999999
Q ss_pred EEEEeCCCCcEeeee-ccccCCccceEEEEEcCCCCEE---EEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC
Q 021925 170 VRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHF---LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 170 i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 245 (305)
|++||+++++..... .....+...|.+++++|++..+ ++++.++.|++||.+.........+...+..+.|+|+++
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 253 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc
Confidence 999999886543221 1223577889999999976543 467789999999999999888888889999999999999
Q ss_pred cEEEee--CCcEEEEEEeehhhhhhhhhhh
Q 021925 246 HVCIGE--PQTIKFMLLVYLFVLFLDILFY 273 (305)
Q Consensus 246 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
.+++++ .++. +++|+........
T Consensus 254 ~~~~~sg~~d~~-----i~iwd~~~~~~~~ 278 (318)
T 4ggc_A 254 ELISGHGFAQNQ-----LVIWKYPTMAKVA 278 (318)
T ss_dssp EEEEEECTTTCC-----EEEEETTTCCEEE
T ss_pred ceEEEEEcCCCE-----EEEEECCCCcEEE
Confidence 988764 4555 6666655444443
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.6e-31 Score=207.58 Aligned_cols=209 Identities=11% Similarity=0.071 Sum_probs=153.4
Q ss_pred cccceEEEEEcCC----CCEEEEeeC--------------------CCceEEEEc-CCCeeeEEecCCCcceEEEEEcC-
Q 021925 9 HERPLTYLKYNKD----GDLLFSCAK--------------------DHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSR- 62 (305)
Q Consensus 9 h~~~v~~~~~~~~----~~~l~s~~~--------------------dg~v~iw~~-~~~~~~~~~~~~~~~v~~i~~~~- 62 (305)
|...|++++++|| ++.+++++. |+.|++|++ ++++.+..+.+|...+..++|+|
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 3456778888888 777776553 788888888 45777777778888888888888
Q ss_pred --CCcEEEEEeCCCcEEEEecCCCCeeEEEee----CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925 63 --DSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (305)
Q Consensus 63 --~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (305)
++.+|++++.|++|+|||+++++++.++.. ...+.+++|+|++..+++...+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~---------------------- 247 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP---------------------- 247 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------------------
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC----------------------
Confidence 668999999999999999999999999872 2356677899988887765420
Q ss_pred ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec--cccCCccceEEEEEcCCCCEEEEEeCCCe
Q 021925 137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTGSLDKS 214 (305)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 214 (305)
. ....+++|+.|++|++||..+++.+..+. ...+|...+.+..++ +.++++++.|++
T Consensus 248 ----------~---------~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT 306 (356)
T 2w18_A 248 ----------C---------AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGT 306 (356)
T ss_dssp -----------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSC
T ss_pred ----------C---------CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCc
Confidence 0 01247899999999999999998876542 123565555444443 789999999999
Q ss_pred EEEEEcCCceEEEEEe-eCCCe-eEEEecCCCCcEEEeeCCcEEEEEEeehhh
Q 021925 215 AKLWDARTLELIKTYV-TERPV-NAVTMSPLLDHVCIGEPQTIKFMLLVYLFV 265 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 265 (305)
|+|||+.+++++.++. |...+ .+++|+|+|++|++|+.|+. +++|+
T Consensus 307 IkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-----IklWd 354 (356)
T 2w18_A 307 IAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-----IFVYH 354 (356)
T ss_dssp EEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-----EEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-----EEEec
Confidence 9999999999999997 55544 46899999999999999997 66665
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=4.5e-30 Score=211.97 Aligned_cols=218 Identities=14% Similarity=0.233 Sum_probs=172.1
Q ss_pred cccccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC---CcEEEEEeCCCcEEEEecC
Q 021925 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 7 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~v~vwd~~ 82 (305)
.+|...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.||.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 36999999999999 78899999999999999999999888887 7888999999984 4599999999999999999
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCce-EEEeCCcceeeeeeEEEEEeecccCC----------CCCceEEEEeccCCCee
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPAD----------QGGESVLILKGPQGRIN 150 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~i~ 150 (305)
+++.+..+. +...+.+++|+|++.. +++++. ++.+.+|++...... ...........|...|.
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASA-----DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcC-----CCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 999888887 7889999999999984 655543 456677776432200 00111122257889999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeee--------------------------------------------cc
Q 021925 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES--------------------------------------------DK 186 (305)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------------------~~ 186 (305)
+++|+|++++|++++.||.|++||+++++..... ..
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence 9999999999999999999999999875432211 11
Q ss_pred ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
..+|...|++++|+|++++|++++.||.|++||+++++++....
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred eccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 13688999999999999999999999999999999998877655
No 116
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=7.9e-30 Score=205.56 Aligned_cols=213 Identities=19% Similarity=0.239 Sum_probs=166.2
Q ss_pred CCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCe-----eEEEe-eCCCceEEEEecCCceEEEeCC
Q 021925 41 NGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ-----LFTFN-FDSPARSVDFAVGDKLAVITTD 113 (305)
Q Consensus 41 ~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~-----~~~~~-~~~~v~~~~~~~~~~~~~~~~~ 113 (305)
+.+...++++|.+.|++++|+|+ +++|+||+.||+|+|||+.+.+. ...+. +...|.+++|+|++.++++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34566789999999999999997 68999999999999999987643 33333 6789999999999999888765
Q ss_pred cceee-e------------------------------------eeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 114 PFMEL-N------------------------------------SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 114 ~~~~~-~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
..... . +.+.+|+. ...........+|...+..++|++
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~-----~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-----LGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-----TSCEEEEECSSSCSSCEEEEEECS
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe-----CCCceEEEEeccccCcccceEEcc
Confidence 32111 0 00111110 011122233456788999999998
Q ss_pred CC--CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCC
Q 021925 157 LN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP 234 (305)
Q Consensus 157 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 234 (305)
++ .++++++.|+.|++||+++++.+..+. +|...|++++|+|++++|++|+.||.|++||+++.+++..+.+...
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 258 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence 75 578899999999999999999988887 7999999999999999999999999999999999999999998889
Q ss_pred eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 235 VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
+.+++|+|++.++++ +.++. +++|+..
T Consensus 259 v~~~~~~~~~~~~~~-~~d~~-----i~iwd~~ 285 (340)
T 4aow_A 259 INALCFSPNRYWLCA-ATGPS-----IKIWDLE 285 (340)
T ss_dssp EEEEEECSSSSEEEE-EETTE-----EEEEETT
T ss_pred EEeeecCCCCceeec-cCCCE-----EEEEECC
Confidence 999999999865554 45555 4555543
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=8.8e-30 Score=211.86 Aligned_cols=206 Identities=17% Similarity=0.298 Sum_probs=173.6
Q ss_pred EecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCee-------eEEecCCCcceEEEEEcC-CCcEEEEEeCCCc
Q 021925 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER-------LGTYRGHNGAVWCCDVSR-DSMTLITGSADQT 75 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~ 75 (305)
.+.+|...|++++|+|+++ +|++|+.||.|++|++.++.. ...+.+|...|.+++|+| ++..|++++.||.
T Consensus 176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 5789999999999999988 999999999999999987422 456778999999999999 6789999999999
Q ss_pred EEEEecCCC---CeeEEEe-eCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925 76 AKLWNVETG---AQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (305)
Q Consensus 76 v~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (305)
|++||++++ +.+..+. +...+.+++|+|++. ++++++. ++.+.+|++... ..++..+..|...|.
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-----dg~v~vwd~~~~-----~~~~~~~~~h~~~v~ 325 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA-----DKTVALWDLRNL-----KLKLHSFESHKDEIF 325 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET-----TSEEEEEETTCT-----TSCSEEEECCSSCEE
T ss_pred EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC-----CCeEEEEeCCCC-----CCCeEEeecCCCCEE
Confidence 999999987 4566664 788999999999887 4555543 556777777532 356778889999999
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEeCCCC--------------cEeeeeccccCCccceEEEEEcCCCC-EEEEEeCCCe
Q 021925 151 RAVWGPLNR-TIISAGEDAIVRIWDTETG--------------KLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKS 214 (305)
Q Consensus 151 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~ 214 (305)
+++|+|+++ +|++++.||.|++||+... +.+.... +|...|++++|+|+++ +|++++.||.
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC---CCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC---CCCCCceEEEECCCCCCEEEEEECCCC
Confidence 999999995 6899999999999999872 3444443 7889999999999999 8999999999
Q ss_pred EEEEEcCCc
Q 021925 215 AKLWDARTL 223 (305)
Q Consensus 215 i~iwd~~~~ 223 (305)
|++|++...
T Consensus 403 i~iw~~~~~ 411 (430)
T 2xyi_A 403 MQVWQMAEN 411 (430)
T ss_dssp EEEEEECHH
T ss_pred EEEeEcccc
Confidence 999998754
No 118
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=202.00 Aligned_cols=205 Identities=23% Similarity=0.379 Sum_probs=173.3
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.+.+|...|.+++| +++++++++.||.|++|| .++....+..|...+.+++|.| +++.+++++.||.|++||.
T Consensus 99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-- 172 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN-- 172 (313)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--
T ss_pred chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--
Confidence 46789999999999 577999999999999999 6788888999999999999998 8999999999999999993
Q ss_pred CCeeEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 84 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
.+....+. +...+.+++++|++.+++.+. ++.+.+|++. ..+.+..+.+|...|.+++|+|++ .+
T Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------dg~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSN------DGLIKLVDMH------TGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp TEEEEEECSSCSSCEEEEEEEETTEEEEEET------TSEEEEEETT------TCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred CceEEEEeccCcccEEEEEEcCCCeEEEccC------CCeEEEEECC------chhhhhhhhcCCceEEEEEEecCC-CE
Confidence 44555554 788999999999999444443 4456666653 346788889999999999999999 58
Q ss_pred EEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 232 (305)
++++.||.|++||+++++.+..+. .|...|.+++|+|+++ +++++.||.|++||+++++.+......
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQVIT---LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEEEEE---CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-----
T ss_pred EEEecCCEEEEEECCCCceeEEEe---ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence 999999999999999999988887 6888999999999998 667999999999999988776655533
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.7e-29 Score=202.23 Aligned_cols=232 Identities=12% Similarity=0.155 Sum_probs=176.4
Q ss_pred cceEEEEEcCCCCEE-EEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeE
Q 021925 11 RPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~ 88 (305)
..+..+++.++++.+ ++++.|+.|++||..+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE
Confidence 458888999988877 567788999999999999998887 67799999999864 4443 4789999999988 6655
Q ss_pred EEeeCCCceEEEEecCCceEEEe-CCcceeeeeeEEEEEeecccCC---------CCCce-EEEEeccCCCeeEEEEcCC
Q 021925 89 TFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPAD---------QGGES-VLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~i~~~~~~~~ 157 (305)
.+.. +...+++++ ..++++ +. ..+.+.+|++...... ....+ ...+.+|.+.|.+++|+|+
T Consensus 135 ~~~~--~~~~~~~s~--~~la~~sg~----~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 135 DDIR--FGGVCEFSN--GLLVYSNEF----NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK 206 (355)
T ss_dssp CCEE--EEEEEEEET--TEEEEEESS----CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred Eecc--CCceEEEEc--cEEEEeCCC----cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence 5544 444556666 444443 21 2456777776532100 01112 6788999999999999999
Q ss_pred CCEEEEeeCCCc-EEEEeCCCCcEeeeeccccC-CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--------
Q 021925 158 NRTIISAGEDAI-VRIWDTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK-------- 227 (305)
Q Consensus 158 ~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------- 227 (305)
+++|++|+.||+ |++||+++++.+..+.. + |...|++++|+|++++|++++.|++|++||++......
T Consensus 207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~--g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTEDGVLVREFRR--GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp SSEEEEEETTCSEEEEEETTTCCEEEEEEC--TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 999999999998 99999999999888752 3 88999999999999999999999999999997653111
Q ss_pred ------------EEe----eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 228 ------------TYV----TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 228 ------------~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
.+. ...+...++|+|+++.|++++.++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 111 11234778999999999999998873
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=5.3e-29 Score=207.39 Aligned_cols=228 Identities=10% Similarity=0.079 Sum_probs=189.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-----EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
..+.+++|+|++.++++++.++.|++||+.+++... .+.+|.+.|.+++|+|+++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 446699999988888888889999999999998876 445789999999999999999999999999999999999
Q ss_pred eeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe
Q 021925 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.+..+. +...+.+++|+|++..++++... .+.+.++++. ..+....+.. ...+.+++|+|++++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRK------TKLEIRKTDK-IGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEETT------TTEEEEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECC------CCcEEEEecC-CCCceEEEEcCCCCEEEEE
Confidence 888887 67789999999999887655421 2345556553 2234444443 4458999999999999988
Q ss_pred e--------CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceEEEEEeeCCCe
Q 021925 165 G--------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPV 235 (305)
Q Consensus 165 ~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~v 235 (305)
+ .||.|++||+++++.+..+. +...+.+++|+|+++.+ ++++.|+.|++||+++++.+..+.+...+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 347 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP 347 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence 8 58899999999998877663 66788999999999755 66688999999999999999988888889
Q ss_pred eEEEecCCCCcEEEeeCC
Q 021925 236 NAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~ 253 (305)
.+++|+|+++.+++++.+
T Consensus 348 ~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EEEEECTTSSEEEEEECC
T ss_pred CeEEEcCCCCEEEEEecC
Confidence 999999999999888764
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9e-30 Score=225.45 Aligned_cols=211 Identities=18% Similarity=0.281 Sum_probs=177.3
Q ss_pred EecccccceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCe--eeEEecCCCcceEEEEEcCC--CcEEEEEeCCCcEEE
Q 021925 5 LMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL 78 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~v~v 78 (305)
.+.+|.++|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||.|++
T Consensus 48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence 57899999999999988 9999999999999999999987 77788889999999999998 999999999999999
Q ss_pred EecCCCCe---eEEEeeCCCceEEEEec-------------CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 79 WNVETGAQ---LFTFNFDSPARSVDFAV-------------GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 79 wd~~~~~~---~~~~~~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
||++++.. .....+...+.+++|+| ++..+++++. ++.+.+|++.... ........+
T Consensus 128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-----dg~I~iwd~~~~~--~~~~~~~~~ 200 (753)
T 3jro_A 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----DNLVKIWKYNSDA--QTYVLESTL 200 (753)
T ss_dssp EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET-----TSCEEEEEEETTT--TEEEEEEEE
T ss_pred EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC-----CCeEEEEeccCCc--ccceeeeee
Confidence 99988732 22233788999999999 4777777765 5667888876432 112456677
Q ss_pred eccCCCeeEEEEcCC---CCEEEEeeCCCcEEEEeCCCCcEe--eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 143 KGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
.+|...|.+++|+|+ ++++++++.||.|++||+++++.. ........|...|++++|+|++++|++++.||.|++
T Consensus 201 ~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 899999999999999 899999999999999999886421 122222358889999999999999999999999999
Q ss_pred EEcCC
Q 021925 218 WDART 222 (305)
Q Consensus 218 wd~~~ 222 (305)
||++.
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 99874
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=205.44 Aligned_cols=210 Identities=18% Similarity=0.289 Sum_probs=164.9
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEE--cCCCcEEEEEeCCCcEEEEec
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s~~~dg~v~vwd~ 81 (305)
..+.+|.+.|++++|+|++++|++++.||.|++||+++++.+. +..|...|.+++| +|++++|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 3578999999999999999999999999999999999988766 4569999999999 889999999999999999999
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee------------------------------------------e
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL------------------------------------------N 119 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~ 119 (305)
++++.+..+.....+.++.+.++. .++...++...+ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 159 RSSNPMMVLQLPERCYCADVIYPM-AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp SCSSCSEEEECSSCEEEEEEETTE-EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred CCCcEEEEEecCCCceEEEecCCe-eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 999988888876666666655432 222211111110 1
Q ss_pred eeEEEEEeecccCCCCCceEEEEeccCC------------CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc
Q 021925 120 SAIHVKRIARDPADQGGESVLILKGPQG------------RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE 187 (305)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 187 (305)
+.+.+|++.... .......+..|.. .|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus 238 g~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 312 (368)
T 3mmy_A 238 GRVAIHYINPPN---PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-- 312 (368)
T ss_dssp SEEEEEESSCSC---HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--
T ss_pred CcEEEEecCCCC---ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--
Confidence 223333332110 0134455666665 79999999999999999999999999999999988887
Q ss_pred cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 188 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
.|...|++++|+|++++|++++.|+..+.|++.
T Consensus 313 -~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 313 -QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred -CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 789999999999999999999998865555543
No 123
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.5e-30 Score=213.96 Aligned_cols=202 Identities=15% Similarity=0.150 Sum_probs=161.6
Q ss_pred eEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEe---eCCCceEEEEec-CCceEEEeCCcceeee
Q 021925 45 LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAV-GDKLAVITTDPFMELN 119 (305)
Q Consensus 45 ~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 119 (305)
.....+|...|++++|+| ++++||+|+.||.|+|||+.+++....+. +...|.+++|+| ++..+++++. +
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~-----D 186 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM-----E 186 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS-----S
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC-----C
Confidence 345567889999999999 56799999999999999998877655443 788999999998 5778887765 5
Q ss_pred eeEEEEEeecccCCCCCceEEEEe---ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925 120 SAIHVKRIARDPADQGGESVLILK---GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196 (305)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 196 (305)
+.+.+|++.. .....+. .+...+.+++|+|++++|++|+.||.|++||++. +.+..+. +|...|++
T Consensus 187 ~~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~---~h~~~v~~ 255 (435)
T 4e54_B 187 GTTRLQDFKG-------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR---MHKKKVTH 255 (435)
T ss_dssp SCEEEEETTS-------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB---CCSSCEEE
T ss_pred CEEEEeeccC-------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe---cccceEEe
Confidence 6677777632 2222222 3344678999999999999999999999999974 4455554 79999999
Q ss_pred EEEcCCCC-EEEEEeCCCeEEEEEcCCceEEEEE----eeCCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 197 LAKAADGS-HFLTGSLDKSAKLWDARTLELIKTY----VTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 197 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
++|+|++. +|++++.|+.|++||+++.+....+ .|..+|++++|+|+|++|++|+.|+...++.+.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 99999876 6889999999999999987654433 378899999999999999999999985444444
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=9.5e-30 Score=209.13 Aligned_cols=206 Identities=11% Similarity=0.050 Sum_probs=151.5
Q ss_pred ecccccceEEEEEcC--------CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcE
Q 021925 6 MKGHERPLTYLKYNK--------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA 76 (305)
Q Consensus 6 l~~h~~~v~~~~~~~--------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v 76 (305)
+.||.+.|++++|+| |+++||+|+.|++|+|||+.++.++..+..|..+|.+++|+|++ .+|++++.||+|
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v 211 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI 211 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence 679999999999998 88999999999999999999988888888899999999999987 489999999999
Q ss_pred EEEecCCCCeeEEE--------------------------eeCCCceEEEEe-cCCceEEEeCCcceeeeeeEEEEEeec
Q 021925 77 KLWNVETGAQLFTF--------------------------NFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR 129 (305)
Q Consensus 77 ~vwd~~~~~~~~~~--------------------------~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (305)
++||+++++..... .+...+.++.|. +++..++.+.. +..+.+|++..
T Consensus 212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-----d~~i~vwd~~~ 286 (393)
T 4gq1_A 212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK-----SGAWLRWNLFA 286 (393)
T ss_dssp EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT-----TSEEEEEEC--
T ss_pred EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC-----CCCEEEEECcc
Confidence 99999887654322 134567788887 68888887765 44555665543
Q ss_pred ccCCCC-------------CceEEEEeccCCCeeEEEEcC-C-CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccce
Q 021925 130 DPADQG-------------GESVLILKGPQGRINRAVWGP-L-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194 (305)
Q Consensus 130 ~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 194 (305)
...... .........+...+. ..++| . +.++++|+.||.|++||+.+++...... .|..+|
T Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~---~~~~~V 362 (393)
T 4gq1_A 287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI---QLGMPI 362 (393)
T ss_dssp -----------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE---ECSSCE
T ss_pred CCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec---CCCCcE
Confidence 211100 011112222222222 33443 3 3466778899999999999988877665 688899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 021925 195 TSLAKAADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~iwd~~ 221 (305)
++++|+|||++||+++.+| +.+|.+.
T Consensus 363 ~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 363 VDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999999999998766 6677654
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.7e-28 Score=198.10 Aligned_cols=217 Identities=13% Similarity=0.112 Sum_probs=180.3
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEE
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~ 101 (305)
..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+++++.+..+.....+.+++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 467888999999999999999999888665 58999999999876 6777899999999999999999988889999999
Q ss_pred ecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE-EEeeCCCcEEEEeCCCCcE
Q 021925 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKL 180 (305)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~ 180 (305)
+|+++.++++... .+.+.++++. ..+....+.. ...+.+++|+|+++++ ++++.|+.|++||+++++.
T Consensus 82 spdg~~l~~~~~~----~~~v~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 82 SPDGKQVYVTNMA----SSTLSVIDTT------SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp CTTSSEEEEEETT----TTEEEEEETT------TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCEEEEEECC----CCEEEEEECC------CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 9999977655421 2445666553 2344444443 4578999999999977 6778899999999999988
Q ss_pred eeeeccccCCccceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee---CCcE
Q 021925 181 LKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE---PQTI 255 (305)
Q Consensus 181 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~ 255 (305)
+..+. ....+..++|+|+++.| ++++.++.|++||+++++.+..+.+...+.+++|+|+++++++++ .++.
T Consensus 151 ~~~~~----~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 151 INTVS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp EEEEE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred EEEEe----cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc
Confidence 88776 34567999999999887 577789999999999999998888888899999999999999887 4555
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.8e-28 Score=191.56 Aligned_cols=163 Identities=14% Similarity=0.098 Sum_probs=123.8
Q ss_pred ecccccceEEEEEcC---CCCEEEEeeCCCceEEEEcCCCeeeEEecCCC---cceEEEEEcCCCcEE------------
Q 021925 6 MKGHERPLTYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN---GAVWCCDVSRDSMTL------------ 67 (305)
Q Consensus 6 l~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l------------ 67 (305)
+.+|...++.++|+| +++.|++|+.|++|+|||+.+++.++++.+|. ..+.+++|+|+|+++
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 446666677777777 66789999999999999999999999998754 367888999999876
Q ss_pred EEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925 68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (305)
Q Consensus 68 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (305)
++|+.|++|++||..+++.+..+.. ++ | .+|..
T Consensus 254 aSGs~D~tIklWd~~tgk~l~v~~~-------~~-p---------------------------------------~Gh~~ 286 (356)
T 2w18_A 254 SLRSPVFQLIVINPKTTLSVGVMLY-------CL-P---------------------------------------PGQAG 286 (356)
T ss_dssp ----CCEEEEEEETTTTEEEEEEEE-------CC-C---------------------------------------TTCCC
T ss_pred eccCCCcEEEEEECCCCEEEEEEEe-------ec-c---------------------------------------CCCcc
Confidence 5677889999999988876643210 00 1 12222
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceE-EEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
.+.+..++ +..+++++.|++|+|||+.+++.+.++. +|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 287 ~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 287 RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 22233333 7889999999999999999999999987 6766554 6899999999999999999999995
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=7.3e-27 Score=193.09 Aligned_cols=228 Identities=14% Similarity=0.076 Sum_probs=176.8
Q ss_pred ceEecccccceEEEEEcCCCCEEEEeeCCC---ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCc--E
Q 021925 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A 76 (305)
Q Consensus 3 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~--v 76 (305)
+..+.+|.+.|.+++|+|+|+.|++++.++ .|++||+.+++.. .+..|.+.+.+++|+|||+.|+ +++.++. |
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 456778999999999999999999999875 9999999988775 5667888999999999999887 6666655 9
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
++||+++++......+...+.+++|+|+++.++.++... +...++.+... . .....+..+...+.+++|+|
T Consensus 250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~----g~~~i~~~d~~----~-~~~~~l~~~~~~~~~~~~sp 320 (415)
T 2hqs_A 250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----GRPQVYKVNIN----G-GAPQRITWEGSQNQDADVSS 320 (415)
T ss_dssp EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETT----S-SCCEECCCSSSEEEEEEECT
T ss_pred EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCC----CCcEEEEEECC----C-CCEEEEecCCCcccCeEECC
Confidence 999999887754445777899999999999887765421 11223322211 1 12334455667888999999
Q ss_pred CCCEEEEeeCC---CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceEEEEEe
Q 021925 157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV 230 (305)
Q Consensus 157 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 230 (305)
+|++|++++.+ ..|++||+.+++.. .+. .+. .+.+++|+|+|+.|++++.++ .|++||+..+ ....+.
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~---~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~ 394 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS---STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLP 394 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEE-ECC---CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECC
T ss_pred CCCEEEEEECcCCceEEEEEECCCCCEE-Eec---CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEee
Confidence 99999988764 58999999988764 343 343 899999999999999988877 8999998744 445554
Q ss_pred -eCCCeeEEEecCCCCc
Q 021925 231 -TERPVNAVTMSPLLDH 246 (305)
Q Consensus 231 -~~~~v~~~~~~~~~~~ 246 (305)
+...|.+++|+|...+
T Consensus 395 ~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 395 ATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp CSSSEEEEEEECCCCCC
T ss_pred CCCCCCcCCcccccccc
Confidence 7788999999997643
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=3.8e-27 Score=185.91 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=180.8
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEecCC-CcceEEEEEcCCCcEEEEEe--CCCcEEEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGH-NGAVWCCDVSRDSMTLITGS--ADQTAKLW 79 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~--~dg~v~vw 79 (305)
..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++ .++...||
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 45667899999999999999999987 88999999998 8777666555 36789999999999999998 34556666
Q ss_pred ec--CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 80 NV--ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 80 d~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
.+ .+++ ...+.....+..++|+|+++.++.... ......++.+... ......+..+...+.+++|+|+
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~----~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~d 183 (297)
T 2ojh_A 114 LLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGI----RDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPD 183 (297)
T ss_dssp EEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEE----ETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTT
T ss_pred EEECCCCc-eEEeecCCCccceEECCCCCEEEEEEC----CCCceEEEEEECC-----CCcceEcccCCCccccceECCC
Confidence 54 4444 444555556888999999998774432 1233455555422 2234556677888999999999
Q ss_pred CCEEEEee-CCCcEEEEeCC-CCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCce
Q 021925 158 NRTIISAG-EDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----------KSAKLWDARTLE 224 (305)
Q Consensus 158 ~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~ 224 (305)
+++++.++ .++.+++|++. .+.....+. .+...+..++|+|++++|++++.+ +.|++||+.+++
T Consensus 184 g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 184 GRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred CCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 99888766 58999999886 455555554 567789999999999999888876 569999999876
Q ss_pred EEEE--E-eeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 225 LIKT--Y-VTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 225 ~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
.... + .+...+.+++|+|+++.|++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 261 VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5433 3 3677899999999999999887654
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=7.9e-27 Score=192.88 Aligned_cols=244 Identities=11% Similarity=0.021 Sum_probs=183.6
Q ss_pred EecccccceEEEEEcC--------------CCCEEEEeeCC------CceEEEEcCCCeeeEEecCCCcceEEEEEcCCC
Q 021925 5 LMKGHERPLTYLKYNK--------------DGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~--------------~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~ 64 (305)
.+.+|...+..+++++ .+..++.++.+ +.|++||.+ +.....+.+|...+.+++|+|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC
Confidence 3667777777777765 15566666554 799999987 45567777899999999999999
Q ss_pred cEEEEEeCCC---cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEe-CCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925 65 MTLITGSADQ---TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVL 140 (305)
Q Consensus 65 ~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (305)
++|++++.++ .|++||+++++......+...+.+++|+|+++.++.. .... ...+..+++.. ....
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~-------~~~~ 260 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLAS-------GQIR 260 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTT-------CCEE
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC---CceEEEEECCC-------CCEE
Confidence 9999999875 9999999999887655577889999999999977744 3211 12244444321 2235
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC---Ce
Q 021925 141 ILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KS 214 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~ 214 (305)
.+..|...+.+++|+|+|++|++++. ++ .|++||+.+++.. .+. .+...+.+++|+|+|++|++++.+ +.
T Consensus 261 ~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdG~~l~~~~~~~g~~~ 336 (415)
T 2hqs_A 261 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQH 336 (415)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC---CSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe---cCCCcccCeEECCCCCEEEEEECcCCceE
Confidence 66778889999999999999998876 44 6888899887643 332 356788899999999999988864 58
Q ss_pred EEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhh
Q 021925 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVL 266 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (305)
|++||+.+++... +.....+.+++|+|+|+.|++++.++.. ..+++|+.
T Consensus 337 i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~--~~l~~~d~ 385 (415)
T 2hqs_A 337 IAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMG--SVLNLVST 385 (415)
T ss_dssp EEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTE--EEEEEEET
T ss_pred EEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCc--cEEEEEEC
Confidence 9999999887743 4333479999999999999988766532 12455544
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=9.6e-25 Score=175.93 Aligned_cols=241 Identities=9% Similarity=0.058 Sum_probs=170.2
Q ss_pred cccccceEEEEEcCCCCEEEEeeCC-CceEEEEcC--CCe--eeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEe
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKD-HTPTVWFAD--NGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWN 80 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd 80 (305)
..|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+..++|+|++++|++++. ++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 4577789999999999999988876 999999997 554 344555444 7899999999998876665 88999999
Q ss_pred cC---CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE--EEec-cCCCeeEEEE
Q 021925 81 VE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL--ILKG-PQGRINRAVW 154 (305)
Q Consensus 81 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~ 154 (305)
+. +.+....+.....+.+++|+|+++.++++.. ....+.++++.... ...... .... ....+..++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL----KQDRICLFTVSDDG---HLVAQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG----GGTEEEEEEECTTS---CEEEEEEEEEECSTTCCEEEEEE
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecC----CCCEEEEEEecCCC---ceeeecccccccCCCCCcceEEE
Confidence 94 3445555556667899999999987777641 13456666664211 011111 2222 3347888999
Q ss_pred cCCCCEEEEee-CCCcEEEEeCCC--CcE--eeeecccc---CCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcC----
Q 021925 155 GPLNRTIISAG-EDAIVRIWDTET--GKL--LKESDKET---GHKKTITSLAKAADGSHFLT-GSLDKSAKLWDAR---- 221 (305)
Q Consensus 155 ~~~~~~l~~~~-~dg~i~iwd~~~--~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~---- 221 (305)
+|+++++++++ .++.|.+||+.. ++. ........ .....+..++|+|++++|++ +..++.|++||+.
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 265 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence 99999776555 789999999954 332 22222111 12346778999999988774 4479999999998
Q ss_pred CceEEEEEeeCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925 222 TLELIKTYVTERPVNAVTMSPLLDHVCIGEP-QTI 255 (305)
Q Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~ 255 (305)
+.+.+..+.....+.+++|+|++++|++++. ++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 266 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred ceEEeeeecCCCccceEEECCCCCEEEEecCCCCe
Confidence 3455555655555899999999999888874 444
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=6.3e-25 Score=176.34 Aligned_cols=246 Identities=10% Similarity=0.047 Sum_probs=177.7
Q ss_pred cccccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCee-eEEecCCCcceEEEEEcCCCcEEEEEeCCC---cEEEEec
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNV 81 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg---~v~vwd~ 81 (305)
..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++ .|.+||+
T Consensus 37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence 3445566 9999999997766655 88999999999887 777776766666699999999998655553 8999999
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeee-EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
++++.+..+........++|+|+++.++++... ... +.++++.......... .........+..++|+|++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRS----SANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNF 189 (331)
T ss_dssp TTTEEEEEEECCTTEEEEEECTTSSCEEEEEET----TTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSE
T ss_pred CCCCeEEEEECCCCccceEECCCCCEEEEEecC----CCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCE
Confidence 999998888888888999999999866655321 123 4555554211000000 112234456789999999997
Q ss_pred EEEee-CCCcEEEEeCCCCcE---eeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceE--EEEEeeC-
Q 021925 161 IISAG-EDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--IKTYVTE- 232 (305)
Q Consensus 161 l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~- 232 (305)
++.++ .++.|.+||+.+++. +..+. ....+..++|+|+|++|++++ .++.|.+||+.+++. +..+...
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence 66554 689999999998887 66664 346678899999999776554 578899999998877 4443321
Q ss_pred ----CC---eeEEEecCCCCcEEEeeCCcEEEEEEeehhhhh
Q 021925 233 ----RP---VNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 233 ----~~---v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (305)
.+ ...++|+|++++|++++.++.. +.+|++.
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~----v~v~d~~ 303 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISANISRE----LKVFTIS 303 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEETTTTE----EEEEETT
T ss_pred ccCCCCcccccceEECCCCCEEEEecCCCCc----EEEEEec
Confidence 11 2458999999998877666543 5555543
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=4.5e-25 Score=195.66 Aligned_cols=231 Identities=11% Similarity=-0.004 Sum_probs=175.7
Q ss_pred ccceEEEEEcCCCCEEEEeeC-CC-----ceEEEEcCCCeeeEEecCCC------------------------cceEEEE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAK-DH-----TPTVWFADNGERLGTYRGHN------------------------GAVWCCD 59 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~-dg-----~v~iw~~~~~~~~~~~~~~~------------------------~~v~~i~ 59 (305)
...+.+++|+|||++|++++. |+ .|++||+.+++....+..+. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 89999999988776665433 2378999
Q ss_pred EcCCCcEEEEEeCCCcEEEEecCCC---CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925 60 VSRDSMTLITGSADQTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (305)
Q Consensus 60 ~~~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (305)
|+|||++|++++. +.|.+||+.++ +......+...+..++|+|+++.++.+.+. .+.++++.. +
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~d~~~------g 182 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVIDLAS------G 182 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEEETTT------T
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEEecCC------C
Confidence 9999999999887 99999999988 554444466789999999999988887653 344444321 1
Q ss_pred ceEEEEeccCC----------------CeeEEEEcCCCCEEEEeeCCC--------------------------------
Q 021925 137 ESVLILKGPQG----------------RINRAVWGPLNRTIISAGEDA-------------------------------- 168 (305)
Q Consensus 137 ~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~dg-------------------------------- 168 (305)
+.......+.. .+..++|+|||++|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 22222222222 247899999999999988765
Q ss_pred -cEEEEeCCC-CcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCceEEEEEeeCC-----Cee
Q 021925 169 -IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKTYVTER-----PVN 236 (305)
Q Consensus 169 -~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~-----~v~ 236 (305)
.|++||+.+ ++...... ...+...+..++| |||+.|++++. +..|++||+.+++....+.... .+.
T Consensus 263 ~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDL-GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEECC-CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEecC-CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 889999988 76544332 1246788999999 99999987664 5689999999998877666322 457
Q ss_pred EEEecCCCCcEEEeeCCcE
Q 021925 237 AVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~ 255 (305)
+++|+|||+++++++.++.
T Consensus 341 ~~~~spdg~~~~~~~~~g~ 359 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGF 359 (741)
T ss_dssp CCEECTTSCEEEEECTTSS
T ss_pred ceEECCCCeEEEEecCCCc
Confidence 8999999998888777764
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.1e-23 Score=167.88 Aligned_cols=229 Identities=11% Similarity=0.026 Sum_probs=178.7
Q ss_pred ccceEEEEEcCCCCEEEE-eeCCCceEEEEcCCCeeeEEecCCCc---------ceEEEEEcCCCcEEEEEe--CCCcEE
Q 021925 10 ERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNG---------AVWCCDVSRDSMTLITGS--ADQTAK 77 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~l~s~~--~dg~v~ 77 (305)
...+..++|+|+|+.++. ...++.|.+||..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 345778999999996554 45579999999999998888876443 278999999999877765 478899
Q ss_pred EEecCCCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----cCCCeeEE
Q 021925 78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----PQGRINRA 152 (305)
Q Consensus 78 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~ 152 (305)
+||.++++.+..+. ....+..++++|+++.++++.. .+.+..++.. ..+....+.. +...+..+
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~------~~~~~~~~~~~~~~~~~~~~~~ 236 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-----DGELITIDTA------DNKILSRKKLLDDGKEHFFINI 236 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-----TSEEEEEETT------TTEEEEEEECCCSSSCCCEEEE
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-----CCeEEEEECC------CCeEEEEEEcCCCCCCcccceE
Confidence 99999999988887 5666899999999998888764 2334444432 2334444433 45567889
Q ss_pred EEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEe
Q 021925 153 VWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 153 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 230 (305)
+|+|+++++++++. ++.|.+||+.+++.+..+.. .. ...++|+|+++.+++++ .++.|.+||..+++.+..+.
T Consensus 237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 237 SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA---PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC---SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc---CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999998777665 59999999999998887762 11 25689999999766555 68999999999999999888
Q ss_pred eCCCeeEEEecCCCCcEEEeeCCc
Q 021925 231 TERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 231 ~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
....+.+++|+|+|++|+++..++
T Consensus 312 ~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 312 TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCSEEEEEEECTTSCEEEEEEECC
T ss_pred cCCCCCeEEEcCCCCEEEEEEccc
Confidence 777889999999999888776553
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=2.6e-23 Score=168.09 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=162.6
Q ss_pred ecccccceEEEEEcCCCCEEEEeeC---CCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW 79 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vw 79 (305)
...+...+..++|+|+|+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|+|++|++++ .++.+.+|
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345667788899999999 555544 6899999998766 4444455677889999999999888887 68999999
Q ss_pred ecCCC-C--eeEEEeeC----------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-
Q 021925 80 NVETG-A--QLFTFNFD----------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP- 145 (305)
Q Consensus 80 d~~~~-~--~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (305)
++... . .+..+... ..+.+++|+|+++++++... ...+.++++... ...........+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----~~~v~~~~~~~~---g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----SDKVYVYNVSDA---GQLSEQSVLTMEA 185 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----TTEEEEEEECTT---SCEEEEEEEECCT
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----CCEEEEEEECCC---CcEEEeeeEEcCC
Confidence 99633 2 22333221 13678999999994444432 234555665411 111112222222
Q ss_pred CCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCC--CcE--eeeeccccC---CccceEEEEEcCCCCEEE-EEeCCCeEE
Q 021925 146 QGRINRAVWGPLNRTIISA-GEDAIVRIWDTET--GKL--LKESDKETG---HKKTITSLAKAADGSHFL-TGSLDKSAK 216 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~~~~dg~i~ 216 (305)
...+..++|+|+|++++++ ..++.|.+|++.. ++. +..+..... ....+..++|+|+|++|+ +...++.|.
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA 265 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence 3367789999999976664 5688999999874 432 222221101 114588999999999874 555689999
Q ss_pred EEEcCC---ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 217 LWDART---LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 217 iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+||+.. .+.+..+. +...+..++|+|+|++|++++.++.
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 999973 24455554 3556899999999999988876533
No 135
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=1.6e-25 Score=185.66 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=148.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCC----------eee------EEecCCCcceEEEEEcCCCcEEE----
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERL------GTYRGHNGAVWCCDVSRDSMTLI---- 68 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~----------~~~------~~~~~~~~~v~~i~~~~~~~~l~---- 68 (305)
+...++.+++++++.++++++.++ +++|+..+. ..+ ..+ .+...|.+++|+|++++|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEe
Confidence 344689999999999999999888 899875321 011 112 3567899999999999999
Q ss_pred EEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC
Q 021925 69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (305)
Q Consensus 69 s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (305)
+++.|+.|++||++++.... ... .........+.+|...
T Consensus 113 sgs~d~~v~iwd~~~~~~~~----~~~-------------------------------------~~~~~~~~~~~~h~~~ 151 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEA----KQQ-------------------------------------KRPFAYHKLLKDAGGM 151 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTT----CSS-------------------------------------CCCSEEEECCCSGGGS
T ss_pred ccCCCceEEEEEccccccCC----cCC-------------------------------------cceeeeeeccCCCCCc
Confidence 78889999999986531000 000 0000112334678999
Q ss_pred eeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 149 INRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 149 i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
|.+++|+|+ +++|++++.||.|++||++++....... +|...|++++|+|+|++|++|+.||+|++||.+ ++...
T Consensus 152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~---~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL---PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK 227 (434)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE---CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred eEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc---CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence 999999998 7899999999999999999886655444 588899999999999999999999999999998 55555
Q ss_pred EEe-e-------CCCeeEEEecCCCCcEEEee
Q 021925 228 TYV-T-------ERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 228 ~~~-~-------~~~v~~~~~~~~~~~l~~~~ 251 (305)
.+. + ...+.+++|++++.++++.+
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 543 2 12789999999988876543
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=4.5e-23 Score=175.54 Aligned_cols=228 Identities=11% Similarity=0.113 Sum_probs=175.9
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEc--CCCeeeEEecCCCcceEEEEEcC----CCcEEEEEeC-CCcEEEEecCCCC
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSR----DSMTLITGSA-DQTAKLWNVETGA 85 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~--~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~s~~~-dg~v~vwd~~~~~ 85 (305)
+..++|+|||++|++++.|+.|++||+ .+++.+.++. +...+..++|+| ||+++++++. +++|.+||..+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 889999999999999999999999999 8899888888 455679999999 9999998885 8999999999999
Q ss_pred eeEEEee------------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925 86 QLFTFNF------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 86 ~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (305)
++..+.. ...+..+.++|++..++++... .+.+.+++..... ...+..+ .+...+..+.
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~~~----~l~~~~i-~~~~~~~~~~ 330 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKDID----NLTVTSI-GAAPFLHDGG 330 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTTSS----SCEEEEE-ECCSSCCCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecCCC----cceeEEe-ccCcCccCce
Confidence 9888763 1267789999977766655321 3344444443211 1111222 3556788899
Q ss_pred EcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCC-CCEEEEEe-CCCeEEEEEcCC-------
Q 021925 154 WGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAAD-GSHFLTGS-LDKSAKLWDART------- 222 (305)
Q Consensus 154 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~------- 222 (305)
|+|+++++++++ .+++|.+||..+++.+..+... ..|......+ ++|+ +..++++. .|++|.+||+.+
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence 999999877655 5899999999999988877621 1244433333 4676 66667765 589999999998
Q ss_pred ceEEEEEe-eCCCeeEEEecCCCCcEEEee
Q 021925 223 LELIKTYV-TERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 251 (305)
++.++++. +...+..++++|+++.|++++
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 89999998 566789999999999999987
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=5.4e-23 Score=166.43 Aligned_cols=237 Identities=10% Similarity=0.059 Sum_probs=182.1
Q ss_pred ccccceEEEEEcCCCCEEEEeeC-------CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEE
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLW 79 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vw 79 (305)
.....+..++|+|+|+.+++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+|
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 34567889999999998888774 56899999999998888764 34578899999998655 45558999999
Q ss_pred ecCCCCeeEEEeeCC----------CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCe
Q 021925 80 NVETGAQLFTFNFDS----------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (305)
Q Consensus 80 d~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (305)
|.++++.+..+.... .+..++++|+++.++++... ....+..++. ...+....+..+...+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~i~~~d~------~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG---KESVIWVVDG------GNIKLKTAIQNTGKMS 187 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES---SSCEEEEEET------TTTEEEEEECCCCTTC
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC---CCceEEEEcC------CCCceEEEecCCCCcc
Confidence 999999888887432 16789999999877776511 0223444443 2334555555456668
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceEEE
Q 021925 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIK 227 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~ 227 (305)
..++|+|+++++++++.++.|.+||+.+++....+... .++...+..++|+|+++.+++++. ++.|.+||..+++.+.
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 89999999999999999999999999999888776531 124567889999999998776665 5999999999999988
Q ss_pred EEeeCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925 228 TYVTERPVNAVTMSPLLDHVCIGEP-QTI 255 (305)
Q Consensus 228 ~~~~~~~v~~~~~~~~~~~l~~~~~-~~~ 255 (305)
.+....+ ..++|+|+++.+++++. ++.
T Consensus 268 ~~~~~~~-~~~~~s~dg~~l~v~~~~~~~ 295 (353)
T 3vgz_A 268 KVAAPES-LAVLFNPARNEAYVTHRQAGK 295 (353)
T ss_dssp EEECSSC-CCEEEETTTTEEEEEETTTTE
T ss_pred EEEcCCC-ceEEECCCCCEEEEEECCCCe
Confidence 8875444 67999999997777664 554
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=9.3e-23 Score=163.87 Aligned_cols=232 Identities=11% Similarity=0.029 Sum_probs=173.1
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCCCc--ceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeCC-----
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNG--AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS----- 94 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~----- 94 (305)
+++++++.++.|++||..+++.+..+..... .+..++|+|+++.+ ++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999998888763221 57899999999766 555668899999999999888777544
Q ss_pred -CceEEEEecCCceEEEeCCcc-----ee--eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 95 -PARSVDFAVGDKLAVITTDPF-----ME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 95 -~v~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
.+..++++|+++.++++.... .. ....+.+++.. ..+....+.. ...+..++|+|++++++++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE------TLSRRKAFEA-PRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT------TTEEEEEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC------CCcEEEEEeC-CCCcceeEECCCCCEEEEe--
Confidence 788999999998887774210 00 12444555442 2334444443 4567889999999988887
Q ss_pred CCcEEEEeCCCCcEeeeecccc----------------------------------------------------------
Q 021925 167 DAIVRIWDTETGKLLKESDKET---------------------------------------------------------- 188 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~---------------------------------------------------------- 188 (305)
++.|++||+.+++....+....
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 6889999999887765443211
Q ss_pred -----CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 189 -----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 189 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
.+...+..++|+|++++++++ ++.|++||+.+++.+..+.....+.+++|+|+|++|++++.++. +.+
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-----i~v 305 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD-----LAA 305 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSE-----EEE
T ss_pred EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCc-----EEE
Confidence 011234568999999998888 79999999999999888887777899999999999998877665 555
Q ss_pred hhhhhhh
Q 021925 264 FVLFLDI 270 (305)
Q Consensus 264 ~~~~~~~ 270 (305)
|+.....
T Consensus 306 ~d~~~~~ 312 (337)
T 1pby_B 306 YDAETLE 312 (337)
T ss_dssp EETTTCC
T ss_pred EECcCCc
Confidence 5554333
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.8e-24 Score=191.33 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=167.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc---ceEEEEEcCCCcEEEEEeCC---------CcEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSAD---------QTAKL 78 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~d---------g~v~v 78 (305)
..+.+++|+|||+++++ +.||+|++||..+++....+..|.. .|.+++|+|||++|++++.+ +.+.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34788999999997766 7899999999999988888877665 49999999999999998774 77889
Q ss_pred EecCCCCeeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC------
Q 021925 79 WNVETGAQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR------ 148 (305)
Q Consensus 79 wd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 148 (305)
||+.+++. ..+. +...+..++|+|+++.++.+.+. .+.+++.. .++.......+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~------~g~~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN------NIYYCAHV------GKQAIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETT------EEEEESSS------SSCCEEEECCCBTTTEEEEE
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEECC------eEEEEECC------CCceEEEecCCCCCceECcc
Confidence 99998876 3333 22247889999999998887752 33333332 22333333333332
Q ss_pred ------------eeEEEEcCCCCEEEEeeCCC----------------------------------cEEEEeCCCCcEee
Q 021925 149 ------------INRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLLK 182 (305)
Q Consensus 149 ------------i~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~ 182 (305)
+.+++|+|||++|++++.|+ .|++||+.+++...
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~ 242 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL 242 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence 37899999999999887543 79999999887545
Q ss_pred eeccc---cCCccceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCceEEEEEe--eCCCe----eEEEecCCCCcEEE
Q 021925 183 ESDKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYV--TERPV----NAVTMSPLLDHVCI 249 (305)
Q Consensus 183 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~--~~~~v----~~~~~~~~~~~l~~ 249 (305)
.+... ..+...+..++|+|||++|++.+. +..|++||+.+++....+. +...+ ..++|+|||+.|+.
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 55411 113678999999999998877653 3579999999998776654 23333 38899999998886
Q ss_pred e
Q 021925 250 G 250 (305)
Q Consensus 250 ~ 250 (305)
.
T Consensus 323 ~ 323 (723)
T 1xfd_A 323 I 323 (723)
T ss_dssp E
T ss_pred E
Confidence 4
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=3e-22 Score=160.74 Aligned_cols=230 Identities=12% Similarity=0.071 Sum_probs=165.7
Q ss_pred EEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CCcEEEEecCCCCe-eEEEeeC
Q 021925 17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQ-LFTFNFD 93 (305)
Q Consensus 17 ~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~v~vwd~~~~~~-~~~~~~~ 93 (305)
.|.++++ .+++++.++.|++||..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 4555554 46777889999999999999888887766777 9999999997766665 89999999999987 6667666
Q ss_pred CCceE-EEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCc-E
Q 021925 94 SPARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAI-V 170 (305)
Q Consensus 94 ~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i 170 (305)
..... ++++|+++.+++..... -...+.+++.. ..+.+..+.. ......++|+|++++++++ ..++. |
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~v~d~~------~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLN--HPFNMQSYSFL------KNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSS--SSCEEEEEETT------TTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred CCCccceEECCCCCEEEEecCCC--CcccEEEEECC------CCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceE
Confidence 66666 99999999888544320 00145555542 2334444443 4456899999999866655 55588 9
Q ss_pred EEEeCCCCcEeeee-ccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceE---EEEEeeCCCeeEEEecCCCC
Q 021925 171 RIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLEL---IKTYVTERPVNAVTMSPLLD 245 (305)
Q Consensus 171 ~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~ 245 (305)
.+|++.....+... .........+..++|+|+|++++++ ..++.|++||+.+++. +..+.....+..++|+|+|+
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS 233 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence 99999764332111 1001234567899999999966554 4689999999999888 77777777889999999999
Q ss_pred cEEEeeCCcEE
Q 021925 246 HVCIGEPQTIK 256 (305)
Q Consensus 246 ~l~~~~~~~~~ 256 (305)
++++++..+..
T Consensus 234 ~l~v~~~~~~~ 244 (331)
T 3u4y_A 234 TVYVLTESTVD 244 (331)
T ss_dssp EEEEECSSEEE
T ss_pred EEEEEEcCCCE
Confidence 88777654433
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=1.3e-23 Score=181.27 Aligned_cols=228 Identities=13% Similarity=0.043 Sum_probs=164.6
Q ss_pred cccceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeC---CCcEEEEecCC
Q 021925 9 HERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA---DQTAKLWNVET 83 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~---dg~v~vwd~~~ 83 (305)
+..+|.+++|+|||+.||+++. ||+++||++++++.. .+..|. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3568999999999999999887 999999999766654 444455 68999999999 77777765 55566765543
Q ss_pred --CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 84 --GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 84 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
......+.........+|+|+++.++..+.. .....+|++.. ++... +..+.. .+++|+|||++|
T Consensus 98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~----~~~~~l~d~~~------g~~~~-l~~~~~--~~~~~spDG~~l 164 (582)
T 3o4h_A 98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGAT----EDRVALYALDG------GGLRE-LARLPG--FGFVSDIRGDLI 164 (582)
T ss_dssp TSTTCCEECTTSCSBEEEEEEECSSCEEEEEEC----SSCEEEEEEET------TEEEE-EEEESS--CEEEEEEETTEE
T ss_pred cCCCccccccCCCCceeeeeCCCCCeEEEEecC----CCCceEEEccC------CcEEE-eecCCC--ceEEECCCCCEE
Confidence 2222244444456677899988644333211 11222454432 22222 333333 889999999999
Q ss_pred EEeeCC----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCceEEEEEe-eCCC
Q 021925 162 ISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLELIKTYV-TERP 234 (305)
Q Consensus 162 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~-~~~~ 234 (305)
++++.+ +.|++||+.+++.. .+. .+...+..++|+|||+.|+++..++ .|++||+.+++.. .+. +...
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred EEEEEcCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 988876 78999999888754 443 5778899999999999999888888 8999999998877 444 5556
Q ss_pred eeEEE--------ecCCCCcEEEeeCCcEE
Q 021925 235 VNAVT--------MSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 235 v~~~~--------~~~~~~~l~~~~~~~~~ 256 (305)
+..++ |+|||.++++++.++..
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence 77777 99999777778777763
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=2e-23 Score=173.19 Aligned_cols=163 Identities=10% Similarity=0.012 Sum_probs=129.5
Q ss_pred ccccceEEEEEcCCCCEEE----EeeCCCceEEEEcCCC--------e---eeEEecCCCcceEEEEEcCC-CcEEEEEe
Q 021925 8 GHERPLTYLKYNKDGDLLF----SCAKDHTPTVWFADNG--------E---RLGTYRGHNGAVWCCDVSRD-SMTLITGS 71 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~----s~~~dg~v~iw~~~~~--------~---~~~~~~~~~~~v~~i~~~~~-~~~l~s~~ 71 (305)
.|...|++++|+|+|++|+ +|+.|+.|+|||+.++ + ....+.+|.+.|.+++|+|+ +++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4567799999999999999 7889999999998754 2 24556679999999999997 78999999
Q ss_pred CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 72 ~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
.||+|++||++++..+. ...+|...|.+
T Consensus 170 ~Dg~v~iwD~~~~~~~~----------------------------------------------------~~~~~~~~v~~ 197 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVC----------------------------------------------------ATLPSTVAVTS 197 (434)
T ss_dssp TTSCEEEEEESSSEEEE----------------------------------------------------EEECGGGCEEE
T ss_pred CCCeEEEEEcCCCccee----------------------------------------------------eccCCCCceeE
Confidence 99999999998763221 12347778999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecccc----CCccceEEEEEcCCCCEEEE-EeCCC------eEEEEEc
Q 021925 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSHFLT-GSLDK------SAKLWDA 220 (305)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~-~~~dg------~i~iwd~ 220 (305)
++|+|+|++|++|+.||.|++||++ ++....+.... .|...+.+++|++++.++++ .+.|| .+++|++
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 9999999999999999999999998 55555543221 23458999999998887754 33443 3999999
Q ss_pred CCc
Q 021925 221 RTL 223 (305)
Q Consensus 221 ~~~ 223 (305)
++.
T Consensus 277 ~~~ 279 (434)
T 2oit_A 277 PKK 279 (434)
T ss_dssp CCT
T ss_pred ccC
Confidence 865
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=2e-22 Score=162.78 Aligned_cols=240 Identities=12% Similarity=0.022 Sum_probs=176.3
Q ss_pred EEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEee
Q 021925 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNF 92 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~ 92 (305)
.++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678889999999999999999999999888887543 2578999999998654 555689999999999988877764
Q ss_pred CC-------CceEEEEecCCceEEEeCCc-------ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 93 DS-------PARSVDFAVGDKLAVITTDP-------FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 93 ~~-------~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.. .+..++++|+++.++++... .......+.++++..... .+.+.... +...+.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~-~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFP-MPRQVYLMRAADDG 159 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEE-CCSSCCCEEECTTS
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeecc-CCCcccceeECCCC
Confidence 33 37899999999988887632 000124555565543211 12222333 33468899999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccC-------------------------------------------------
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETG------------------------------------------------- 189 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------------------------------- 189 (305)
+ +++++ +.|.+||+.+++....+.....
T Consensus 160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 9 55554 3499999999887766542110
Q ss_pred ----------------CccceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925 190 ----------------HKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 190 ----------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+...+..++++| ++++++++ ++.|.+||+.+++.+..+.....+.+++|+|+++.|++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT 314 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC
Confidence 011345677889 99998888 88999999999999888887777889999999999988776
Q ss_pred CcEEEEEEeehhhhhh
Q 021925 253 QTIKFMLLVYLFVLFL 268 (305)
Q Consensus 253 ~~~~~~~~~~~~~~~~ 268 (305)
++. +.+|+...
T Consensus 315 ~~~-----v~v~d~~~ 325 (349)
T 1jmx_B 315 FND-----LAVFNPDT 325 (349)
T ss_dssp SSE-----EEEEETTT
T ss_pred CCe-----EEEEeccc
Confidence 665 55665543
No 144
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=2.5e-22 Score=171.00 Aligned_cols=230 Identities=10% Similarity=0.029 Sum_probs=173.9
Q ss_pred EEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec--CCCCeeEEEeeCC
Q 021925 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--ETGAQLFTFNFDS 94 (305)
Q Consensus 17 ~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~ 94 (305)
.++|++..+++++.|++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|.+||+ .+++.+..+....
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence 3889999999999999999999999999999984333 899999999999999999999999999 8888888888888
Q ss_pred CceEEEEec----CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----------c-CCCeeEEEEcCCCC
Q 021925 95 PARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR 159 (305)
Q Consensus 95 ~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~ 159 (305)
.+..++|+| +++.++++.. ....+.+++. ...+.+..+.. | ...+..+.++|+++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~----~~~~v~v~D~------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAY----WPPQFAIMDG------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE----ESSEEEEEET------TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred CcceEEeCCCcCCCCCEEEEEEc----cCCeEEEEec------cccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 889999999 9999888752 2344555543 23345555443 2 23688999999876
Q ss_pred E-EEEeeCCCcEEEEeCCCCcEee--eeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEee----
Q 021925 160 T-IISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT---- 231 (305)
Q Consensus 160 ~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---- 231 (305)
. +++...++.|.+||..+.+.+. .+ .+...+..+.|+|+|++|++++ .+++|.+||+.+++++..+..
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTSI----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEEE----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEEe----ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 4 5566778999999998866544 33 2456678899999999876554 589999999999999888872
Q ss_pred -CCCeeEEEecCC-CCcEEEee-CCcEEEEEEee
Q 021925 232 -ERPVNAVTMSPL-LDHVCIGE-PQTIKFMLLVY 262 (305)
Q Consensus 232 -~~~v~~~~~~~~-~~~l~~~~-~~~~~~~~~~~ 262 (305)
......+ ++|+ ++.++++. +++.+.++.+.
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence 2222222 4777 55566654 45664444443
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.3e-22 Score=159.77 Aligned_cols=212 Identities=9% Similarity=-0.001 Sum_probs=157.3
Q ss_pred EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-CCeeEEEee--CCCceEEEEec
Q 021925 27 SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNF--DSPARSVDFAV 103 (305)
Q Consensus 27 s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~--~~~v~~~~~~~ 103 (305)
.++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|.+||+.+ ++....... ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34678999999999888764 445889999999999999999876 78999999998 776655542 36788999999
Q ss_pred CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCC--CCcE
Q 021925 104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE--TGKL 180 (305)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~ 180 (305)
+++.++.+.... .....++.+.... .....+..+ ..+..++|+|++++|+ +++.++.+++|++. +++.
T Consensus 95 dg~~l~~~~~~~---~~~~~l~~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 95 DGALYAISDKVE---FGKSAIYLLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp TSSEEEEEECTT---TSSCEEEEEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCEEEEEEeCC---CCcceEEEEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 999888876311 1234444443211 112333333 3488899999999887 77789999999864 3433
Q ss_pred eeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcC-CceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925 181 LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 181 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
..+. .+...+.+++|+|+++.|+.++ .++.+++|++. .+..+..+. +...+.+++|+|++++|++++.+
T Consensus 166 -~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 166 -TRLT---HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp -EECC---CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred -eEcc---cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence 3333 4678899999999999888766 58999999886 444555554 56678899999999999888765
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=1.7e-21 Score=158.25 Aligned_cols=240 Identities=11% Similarity=0.125 Sum_probs=163.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCC----CceEEEEcCC--Ce--eeEEecCCCcceEEEEEcCCCcEEEEEe-CCCcEEEE
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKD----HTPTVWFADN--GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW 79 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~v~vw 79 (305)
|...+..++|+|+|++|++++.+ +.|.+|++.. ++ .+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999998876 7999998865 43 33344445566788888 777777766 58899999
Q ss_pred ecCCCCeeE----EEee-----------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC--C-Cce---
Q 021925 80 NVETGAQLF----TFNF-----------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--G-GES--- 138 (305)
Q Consensus 80 d~~~~~~~~----~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~--- 138 (305)
++.....+. .... ...+.+++|+|+++.++++... ...+.++++....... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG----TDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT----TTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC----CCEEEEEEEcCCCCcccccceeeccc
Confidence 997543322 1111 1224779999999977665421 2345555554321100 0 000
Q ss_pred -EEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCC--
Q 021925 139 -VLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLD-- 212 (305)
Q Consensus 139 -~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 212 (305)
......+...+..++|+|+++++++++ .++.|.+||+.+++. +..+.....+......++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 122233455678999999999888777 589999999987654 23333222344567899999999998776654
Q ss_pred CeEEEEEcC--Cce--EEEEEeeCCCeeEEEecCCCCcEEEeeCCc
Q 021925 213 KSAKLWDAR--TLE--LIKTYVTERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 213 g~i~iwd~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
+.|.+|++. +++ .+..+.....+.+++|+|+|++|++++.++
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred CEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence 899999985 444 444444555788999999999999887443
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=3.2e-23 Score=182.86 Aligned_cols=238 Identities=11% Similarity=0.087 Sum_probs=170.5
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-----CeeeEEecCCCcc--------------eEEEEEcCCC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGA--------------VWCCDVSRDS 64 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-----~~~~~~~~~~~~~--------------v~~i~~~~~~ 64 (305)
..+..|...+.+++|+|||+.|+++ .|+.|++|++.+ ++.......+... +.+++|+|||
T Consensus 114 ~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg 192 (706)
T 2z3z_A 114 TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG 192 (706)
T ss_dssp EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS
T ss_pred EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC
Confidence 3455677789999999999999985 689999999998 7766544443332 4899999999
Q ss_pred cEEEEEe---------------------------------CCCcEEEEecCCCCeeEEEe---eCCCceEEEEecCCceE
Q 021925 65 MTLITGS---------------------------------ADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLA 108 (305)
Q Consensus 65 ~~l~s~~---------------------------------~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 108 (305)
++|++++ .+..|.+||+.+++...... +...+.+++|+|+++.+
T Consensus 193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 272 (706)
T 2z3z_A 193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENIL 272 (706)
T ss_dssp SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEE
T ss_pred CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEE
Confidence 9999987 44679999999887554432 33567899999999988
Q ss_pred EEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCC---CeeEEEEcC--CCCEEEEeeCCCcEEEEeCC-CCcE
Q 021925 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQG---RINRAVWGP--LNRTIISAGEDAIVRIWDTE-TGKL 180 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~ 180 (305)
+++..........+..++.. .++....+. .+.. .+..++|+| +|+++++++.||.+++|++. +++.
T Consensus 273 ~~~~~~~~~~~~~v~~~d~~------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 273 YVAEVNRAQNECKVNAYDAE------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp EEEEECTTSCEEEEEEEETT------TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred EEEEeCCCCCeeEEEEEECC------CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence 77543222222344444432 121222221 2222 246789999 99999999999999999876 5666
Q ss_pred eeeeccccCCccceEE-EEEcCCCCEEEEEeC-CC----eEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeC
Q 021925 181 LKESDKETGHKKTITS-LAKAADGSHFLTGSL-DK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 181 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+..+. .+...+.. ++|+|+++.|+.++. ++ .|+.||+.+++ ...+.+...+.+++|+|+|++++.+..
T Consensus 347 ~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 347 IRQVT---KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp EEECC---CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEE
T ss_pred EEecC---CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEec
Confidence 66665 56667776 799999998766554 44 67778887765 344556777999999999998887643
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=6.9e-23 Score=181.68 Aligned_cols=236 Identities=7% Similarity=-0.015 Sum_probs=172.7
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc----------------eEEEEEcCCCcEE
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA----------------VWCCDVSRDSMTL 67 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~l 67 (305)
..+..|...+.+++|||||++|++++ ++.|++||+.+++.......+... +.+++|+|||++|
T Consensus 145 ~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l 223 (741)
T 2ecf_A 145 RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI 223 (741)
T ss_dssp CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence 45677888999999999999999987 569999999988776555444432 4789999999999
Q ss_pred EEEeCCC---------------------------------cEEEEecCC-CCeeEEE---eeCCCceEEEEecCCceEEE
Q 021925 68 ITGSADQ---------------------------------TAKLWNVET-GAQLFTF---NFDSPARSVDFAVGDKLAVI 110 (305)
Q Consensus 68 ~s~~~dg---------------------------------~v~vwd~~~-~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 110 (305)
++++.|+ .|.+||+.+ ++..... .+...+..++| |+++.++.
T Consensus 224 ~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~ 302 (741)
T 2ecf_A 224 AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSF 302 (741)
T ss_dssp EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEE
T ss_pred EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEE
Confidence 9988765 789999988 7755433 13456789999 99998887
Q ss_pred eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC----CeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcEeeeec
Q 021925 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG----RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESD 185 (305)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 185 (305)
...........+..++.. .++....+..+.. .+..++|+|+|+++++++.||.++||.+. .++ ...+.
T Consensus 303 ~~~~~~~~~~~i~~~d~~------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 303 QRQSRDQKKLDLVEVTLA------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp EEEETTSSEEEEEEEETT------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred EEecccCCeEEEEEEECC------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 653222223444444442 2344444444443 45689999999988899999988888765 344 55554
Q ss_pred cccCCccceEEE-EEcCCCCEEEE-EeCCC--eEEEEEcCC-ceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 186 KETGHKKTITSL-AKAADGSHFLT-GSLDK--SAKLWDART-LELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 186 ~~~~~~~~v~~~-~~~~~~~~l~~-~~~dg--~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
.+...+..+ .|+|+++.|+. ++.++ .+++|++.. ++....+.....+.+++|+|+|+.|+...
T Consensus 376 ---~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 376 ---HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp ---CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEE
T ss_pred ---ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEe
Confidence 567778777 59999987754 44455 899999864 55556666667789999999999988763
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=4.7e-23 Score=188.87 Aligned_cols=231 Identities=11% Similarity=-0.005 Sum_probs=177.7
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-----------CCcceEEEEEc-CCCcEEEEEeC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-----------HNGAVWCCDVS-RDSMTLITGSA 72 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~l~s~~~ 72 (305)
.+.+|. .+...+|+|||+.|+++. ++.|++|+.... .+..+.. |...+.+++|+ |||+.|++++
T Consensus 240 ~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~- 315 (1045)
T 1k32_A 240 KHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS- 315 (1045)
T ss_dssp ECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred EecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence 344554 467789999999998874 899999998544 3445554 34478999999 9999999887
Q ss_pred CCcEEEEecCCCCeeEEEeeCC-CceEEEEecCCceEEEeCCcceeeeeeEE-EEEeecccCCCCCceEEEEeccCCCee
Q 021925 73 DQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIH-VKRIARDPADQGGESVLILKGPQGRIN 150 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (305)
++.|.+|++.+++......+.. .+..++|+ +++.++.+.+ ...+. +++.. . .....+.+|...+.
T Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d~~------~-~~~~~l~~~~~~~~ 382 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYDYR------T-GKAEKFEENLGNVF 382 (1045)
T ss_dssp TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEETT------T-CCEEECCCCCCSEE
T ss_pred cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEECC------C-CCceEecCCcccee
Confidence 7899999998877554333555 78889999 8888887665 12222 22221 1 22334447778899
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC----------eEEEEEc
Q 021925 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----------SAKLWDA 220 (305)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~iwd~ 220 (305)
.++|+|+|++|++++.++.|++||+.+++...... +|...+..++|+|||++|++++.++ .|++||+
T Consensus 383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred eeEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 99999999999999999999999999998777664 5778889999999999999887654 8999999
Q ss_pred CCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 221 RTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 221 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.+++......+...+.+++|+|+|+.|++++.++.
T Consensus 460 ~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 460 EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp TTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred CCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC
Confidence 98884333336777889999999999998877554
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=3.3e-22 Score=176.40 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=166.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-----CC
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA 85 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-----~~ 85 (305)
..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||+.|+++ .|+.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666554 5999999999887654 44467788999999999999985 679999999998 76
Q ss_pred eeEEEeeCCC---------------ceEEEEecCCceEEEeCCcc----------------------------eeeeeeE
Q 021925 86 QLFTFNFDSP---------------ARSVDFAVGDKLAVITTDPF----------------------------MELNSAI 122 (305)
Q Consensus 86 ~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 122 (305)
.......... +.++.|+|+++.++.+.... ......+
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 6544332222 58999999999988875100 0011233
Q ss_pred EEEEeecccCCCCCceEEEE--eccCCCeeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCcEeeeeccccCCc---c
Q 021925 123 HVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHK---K 192 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~---~ 192 (305)
.++++. .++..... ..|...+.+++|+|+|++|++++.++ .|++||+.+++....+... .+. .
T Consensus 238 ~~~d~~------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~ 310 (706)
T 2z3z_A 238 GIYHLA------TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVE 310 (706)
T ss_dssp EEEETT------TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCC
T ss_pred EEEECC------CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeEC
Confidence 344332 11221111 24567789999999999999887765 8999999988444433211 111 2
Q ss_pred ceEEEEEcC--CCCEEEEEeCCCeEEEEEcC-CceEEEEEe-eCCCeeE-EEecCCCCcEEEeeCCc
Q 021925 193 TITSLAKAA--DGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNA-VTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 193 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~~~ 254 (305)
.+..++|+| +|+++++++.||.+++|++. +++.+..+. +...+.+ ++|+|+++.|++++.++
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 346789999 99999999999999999876 566666665 5556766 79999999887765554
No 151
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=2.8e-21 Score=155.59 Aligned_cols=226 Identities=14% Similarity=0.176 Sum_probs=153.5
Q ss_pred EEEEeeCCCceEEEEcC-CC--eeeEEecCCCcceEEEEEcCCCcEEEEEeCC-CcEEEEecC--CCCe--eEEEeeCCC
Q 021925 24 LLFSCAKDHTPTVWFAD-NG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLWNVE--TGAQ--LFTFNFDSP 95 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~-~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-g~v~vwd~~--~~~~--~~~~~~~~~ 95 (305)
.+++++.|+.|++|++. ++ +.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+.....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence 34444779999999995 33 333333 377789999999999988888886 999999997 5553 344455568
Q ss_pred ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEe
Q 021925 96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWD 174 (305)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd 174 (305)
+..++|+|+++.++++... .+.+.++++. . ....+....+. ....+.+++|+|+++++++++ .++.|++||
T Consensus 86 ~~~~~~s~dg~~l~~~~~~----~~~i~~~d~~-~--~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYN----AGNVSVTRLE-D--GLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp CSEEEECTTSSEEEEEETT----TTEEEEEEEE-T--TEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CcEEEEcCCCCEEEEEecC----CCeEEEEECC-C--Ccccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 8999999999977666431 2345555553 0 00112233333 334588999999999888877 899999999
Q ss_pred CCC-CcEeeee--ccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC--ceE--EEEEe-e------CCCeeEEE
Q 021925 175 TET-GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART--LEL--IKTYV-T------ERPVNAVT 239 (305)
Q Consensus 175 ~~~-~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~--~~~~~-~------~~~v~~~~ 239 (305)
+.+ ++..... .........+..++|+|+++++++++ .++.|.+||+.. ++. ..... . ...+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 987 5443211 11112345788999999999776554 789999999953 432 22222 1 12456899
Q ss_pred ecCCCCcEEEee-CCcEEEE
Q 021925 240 MSPLLDHVCIGE-PQTIKFM 258 (305)
Q Consensus 240 ~~~~~~~l~~~~-~~~~~~~ 258 (305)
|+|++++|+++. .++...+
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEecCCCEEEE
Confidence 999999888655 5555333
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=5.6e-22 Score=175.41 Aligned_cols=239 Identities=10% Similarity=0.041 Sum_probs=163.2
Q ss_pred Eeccccc---ceEEEEEcCCCCEEEEeeCC---------CceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEE
Q 021925 5 LMKGHER---PLTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLIT 69 (305)
Q Consensus 5 ~l~~h~~---~v~~~~~~~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s 69 (305)
++.+|.. .|.+++|||||++|++++.+ +.+++||+.+++. ..+. .|...+..++|+|||+.|++
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence 3455554 49999999999999998764 6788999998875 3333 34555889999999999999
Q ss_pred EeCCCcEEEEecCCCCeeEEEee-CCCc------------------eEEEEecCCceEEEeCCccee-------------
Q 021925 70 GSADQTAKLWNVETGAQLFTFNF-DSPA------------------RSVDFAVGDKLAVITTDPFME------------- 117 (305)
Q Consensus 70 ~~~dg~v~vwd~~~~~~~~~~~~-~~~v------------------~~~~~~~~~~~~~~~~~~~~~------------- 117 (305)
++. +.|++||+.+++....... ...+ .+++|+|+++.++.+......
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 886 7999999998877665542 2223 789999999988877532100
Q ss_pred ----------------eeeeEEEEEeecccCCCCCceEEEEecc------CCCeeEEEEcCCCCEEEEeeC----CCcEE
Q 021925 118 ----------------LNSAIHVKRIARDPADQGGESVLILKGP------QGRINRAVWGPLNRTIISAGE----DAIVR 171 (305)
Q Consensus 118 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~ 171 (305)
....+.++++.. .+....+..+ ...+..++|+|||+++++... +..|+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 283 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT 283 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence 011333333321 2222333333 567889999999998876643 35799
Q ss_pred EEeCCCCcEeeeeccccCCccce----EEEEEcCCCCEEEE--EeCCC------eEEEEE-cCCceE--EEEEe-eCCCe
Q 021925 172 IWDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT--GSLDK------SAKLWD-ARTLEL--IKTYV-TERPV 235 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~-~~~~v 235 (305)
+||+.+++....+.. .+...+ ..++|+|||+.|+. +..++ .|++|| ..+++. ...+. ....+
T Consensus 284 ~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 284 LCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp EEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred EEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 999999887665531 122333 37899999998775 44567 577777 344441 34443 33445
Q ss_pred eE-EEecCCCCcEEEeeCC
Q 021925 236 NA-VTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 236 ~~-~~~~~~~~~l~~~~~~ 253 (305)
.. ++|+|+|+.|+..+.+
T Consensus 362 ~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp EEEEEEETTTTEEEEEESS
T ss_pred EeeeEEcCCCCEEEEEEcC
Confidence 54 6999999999876554
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.5e-21 Score=177.43 Aligned_cols=227 Identities=14% Similarity=0.139 Sum_probs=175.8
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCC-CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
.+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+...+|+|||+.|+++ .++.|.+||+..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 45789999999999998 6777888889999998753 44555666555 45677999999999887 489999999954
Q ss_pred CCeeEEEee------------CCCceEEEEe-cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC-Ce
Q 021925 84 GAQLFTFNF------------DSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RI 149 (305)
Q Consensus 84 ~~~~~~~~~------------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 149 (305)
. .+..+.. ...+..++|+ |+++.++.+.. ..+..++.. ......+..|.. .+
T Consensus 275 ~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~------~~i~~~~~~-------~~~~~~~~~~~~~~~ 340 (1045)
T 1k32_A 275 E-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR------GQAFIQDVS-------GTYVLKVPEPLRIRY 340 (1045)
T ss_dssp C-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET------TEEEEECTT-------SSBEEECSCCSCEEE
T ss_pred e-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc------CEEEEEcCC-------CCceEEccCCCcceE
Confidence 4 3333332 2268999999 99998887763 222332221 122334556666 88
Q ss_pred eEEEEcCCCCEEEEeeCCCcEE-EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE
Q 021925 150 NRAVWGPLNRTIISAGEDAIVR-IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 228 (305)
..++|+ +++.|+.++.++.+. +||+.+++.. .+. ++...+..++|+|||++|++++.++.|++||+.+++....
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~---~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE---ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC---CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec---CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 999999 999999998888898 9999876643 333 5778899999999999999999999999999999988877
Q ss_pred Ee-eCCCeeEEEecCCCCcEEEeeCC
Q 021925 229 YV-TERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 229 ~~-~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
.. +...+.+++|+|||++|++++.+
T Consensus 416 ~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 416 ERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp EECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred ccCCCCCccceEECCCCCeEEEEecC
Confidence 74 77788999999999999887654
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=5.5e-21 Score=155.48 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=162.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcC-CCeeeEEecC-CCcceEEEEEcCCCcE--EEEEe-------------C
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRG-HNGAVWCCDVSRDSMT--LITGS-------------A 72 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~-~~~~v~~i~~~~~~~~--l~s~~-------------~ 72 (305)
...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3468899999999999998887 99999997 7776543321 1123566899999984 45553 6
Q ss_pred CCcEEEEecC-CCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--c
Q 021925 73 DQTAKLWNVE-TGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--G 144 (305)
Q Consensus 73 dg~v~vwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 144 (305)
+|.+.+|++. .++....+. ....+.+++|+|+++.++++... ...+.++++.. ......+..+. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~----~~~v~~~~~~~---~g~~~~~~~~~~~~ 190 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT----ANKLWTHRKLA---SGEVELVGSVDAPD 190 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----TTEEEEEEECT---TSCEEEEEEEECSS
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC----CCEEEEEEECC---CCCEEEeeeEecCC
Confidence 8999999997 455544433 34678899999999987765421 23455555531 01111122233 2
Q ss_pred cCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCC--CCcEe---eeecccc----CCcc------ceEEEE-EcCCCCEEE
Q 021925 145 PQGRINRAVWGPLNRTIISAGE-DAIVRIWDTE--TGKLL---KESDKET----GHKK------TITSLA-KAADGSHFL 207 (305)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~---~~~~~~~----~~~~------~v~~~~-~~~~~~~l~ 207 (305)
+...+..++|+|+|+++++++. ++.|.+|++. +++.. ..+.... ++.. .+..++ |+|||++|+
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 3567899999999999988775 6899999875 45542 1222111 1222 588999 999999988
Q ss_pred EEeCCC------eEEEEEcC-CceEEEE---Ee-eCCCeeEEEecC---CCCcEEEeeCCcE
Q 021925 208 TGSLDK------SAKLWDAR-TLELIKT---YV-TERPVNAVTMSP---LLDHVCIGEPQTI 255 (305)
Q Consensus 208 ~~~~dg------~i~iwd~~-~~~~~~~---~~-~~~~v~~~~~~~---~~~~l~~~~~~~~ 255 (305)
+++.+. +|.+|++. +++.... .. ....+..++|+| +|++|++++.++.
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 776432 89999996 5665432 32 345678899999 8999999876533
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.7e-21 Score=155.31 Aligned_cols=206 Identities=14% Similarity=0.070 Sum_probs=157.1
Q ss_pred cceEEEEEcCCCCEEEEee------------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCA------------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~------------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
..+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 3678899999999998886 579999999999988877764 4567889999999988887 688999
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeee-------------------eeEEEEEeecccCCCCCce-
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN-------------------SAIHVKRIARDPADQGGES- 138 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~- 138 (305)
||+.+++....+........+.++|++..++.......... ..+..++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~------~~~~~ 232 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE------TGEMA 232 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT------TCCEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC------CCCce
Confidence 99999988877764442334478888886655443211110 012233322 1121
Q ss_pred EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 218 (305)
...+..+...+..++|+|++++++++ ++.|.+||+.+++.+..+. ....+.+++|+|+|++|++++.++.|++|
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----CCCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 33345566778899999999999888 6999999999998887775 33567889999999999999999999999
Q ss_pred EcCCceEEEEEee
Q 021925 219 DARTLELIKTYVT 231 (305)
Q Consensus 219 d~~~~~~~~~~~~ 231 (305)
|+.+++.+..+..
T Consensus 307 d~~~~~~~~~~~~ 319 (337)
T 1pby_B 307 DAETLEKKGQVDL 319 (337)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECcCCcEEEEEEc
Confidence 9999999888873
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=177.83 Aligned_cols=229 Identities=14% Similarity=0.078 Sum_probs=158.6
Q ss_pred EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCc---ceEEEEEcCCCcEEEEEeC---------CCcEEEEec
Q 021925 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA---------DQTAKLWNV 81 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~---------dg~v~vwd~ 81 (305)
.+++|+|+|+++++ +.|+.|++||+.+++....+..|.. .+.+++|+|||++|++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 37899999965555 4699999999999988777765543 3899999999999998876 789999999
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC---CCCceEEEEeccCC---------Ce
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD---QGGESVLILKGPQG---------RI 149 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~i 149 (305)
.+++.+........+..++|+|+|+.++.+.+. .+.++++...... ..+.....+.++.. ..
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~------~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQN------NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEETT------EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCCccccceecCcccccceECCCCCEEEEEECC------eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 988763212234678899999999999887642 4444443211100 00000001122221 22
Q ss_pred eEEEEcCCCCEEEEeeCCC----------------------------------cEEEEeCCCCcEe--eeec---cccCC
Q 021925 150 NRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLL--KESD---KETGH 190 (305)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~~~---~~~~~ 190 (305)
.+++|+|||++|++++.|. .|++||+.+++.. ..+. ...+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 5899999999999887652 7889999887642 1111 11257
Q ss_pred ccceEEEEEcCCCCEEEEEeCC----CeEEEEE----cCCceEEEEE----e-eCCCee-----EEEecCCCCcEEE
Q 021925 191 KKTITSLAKAADGSHFLTGSLD----KSAKLWD----ARTLELIKTY----V-TERPVN-----AVTMSPLLDHVCI 249 (305)
Q Consensus 191 ~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~-~~~~v~-----~~~~~~~~~~l~~ 249 (305)
...+..++|+||++++++.... ..|++|| +.+++....+ . +...+. .++|+|+|+.++.
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 7889999999998877764432 3488999 8887765544 2 445565 8899999997665
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=3.2e-20 Score=149.81 Aligned_cols=214 Identities=11% Similarity=0.059 Sum_probs=151.9
Q ss_pred ceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCC------cceEEEEEcCCCcEEEEEeCC-----------
Q 021925 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGSAD----------- 73 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~i~~~~~~~~l~s~~~d----------- 73 (305)
.+..++|+|+|+.++ ++..++.|.+||+.+++.+..+.... ..+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 578999999998665 45568999999999999887776432 237889999999999988865
Q ss_pred -CcEEEEecCCC---CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeee-eEE-EEEeecccCCC-------------
Q 021925 74 -QTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS-AIH-VKRIARDPADQ------------- 134 (305)
Q Consensus 74 -g~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~------------- 134 (305)
+.|.+||++++ +.+.....+..+.+++|+|+++ +++.......++. ... ...+.......
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence 89999999884 3445556666789999999999 5544432111111 000 11111000000
Q ss_pred ----------------------------------------CCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCcEEEE
Q 021925 135 ----------------------------------------GGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW 173 (305)
Q Consensus 135 ----------------------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 173 (305)
..-.......+...+..++++| ++++++++ ++.|.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~ 280 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY 280 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence 0000011112234567889999 99999888 8899999
Q ss_pred eCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC
Q 021925 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (305)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 232 (305)
|+.+++.+..+. ....+.+++|+|+++.|++++.++.|++||+++++.+..+...
T Consensus 281 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 281 DLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ECccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999998887775 3345678999999999988888999999999999998887643
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.2e-19 Score=145.06 Aligned_cols=212 Identities=12% Similarity=0.123 Sum_probs=143.1
Q ss_pred cccccceEEEEEcCCCCEEEEee-CCCceEEEEcCC-C--eeeEEecC---------CCcceEEEEEcCCCcEEEEEeCC
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADN-G--ERLGTYRG---------HNGAVWCCDVSRDSMTLITGSAD 73 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~-~--~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~d 73 (305)
..|...+..++|+|+|++|++++ .++.|.+|++.. + +.+..+.. +...+.+++|+|+|+.+++...+
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~ 161 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS 161 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence 45677889999999999888887 679999999963 2 23333321 12348899999999966666678
Q ss_pred CcEEEEecC-CCCeeEEE--e--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC--
Q 021925 74 QTAKLWNVE-TGAQLFTF--N--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ-- 146 (305)
Q Consensus 74 g~v~vwd~~-~~~~~~~~--~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 146 (305)
+.|.+|++. +++..... . ....+..++|+|+++.++++... ...+.++++.... ........+....
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~----~~~v~v~~~~~~~--g~~~~~~~~~~~~~~ 235 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL----SSQIASLKYDTQT--GAFTQLGIVKTIPAD 235 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----TTEEEEEEEETTT--TEEEEEEEEESSCTT
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC----CCEEEEEEecCCC--CceEEeeeeeecCCC
Confidence 899999998 45433221 2 23367789999999977665432 2334445443210 0011122222222
Q ss_pred ----CCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCC---cEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-CeEEE
Q 021925 147 ----GRINRAVWGPLNRTII-SAGEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKL 217 (305)
Q Consensus 147 ----~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i 217 (305)
..+..++|+|+|++|+ +...++.|.+||+... +.+..+. .+...+..++|+|+|++|++++.+ +.|.+
T Consensus 236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS---TEGDFPRDFDLDPTEAFVVVVNQNTDNATL 312 (347)
T ss_dssp CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE---CSSSCCCEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe---cCCCCcCeEEECCCCCEEEEEEcCCCcEEE
Confidence 3478899999999875 5556899999999732 3333333 445668899999999998888764 89999
Q ss_pred E--EcCCceEEE
Q 021925 218 W--DARTLELIK 227 (305)
Q Consensus 218 w--d~~~~~~~~ 227 (305)
| |.++++...
T Consensus 313 ~~~d~~tg~l~~ 324 (347)
T 3hfq_A 313 YARDLTSGKLSL 324 (347)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEeCCCCeEEe
Confidence 9 555666553
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=5.3e-20 Score=158.82 Aligned_cols=231 Identities=9% Similarity=0.064 Sum_probs=162.7
Q ss_pred eEecccc-cceEEEEEcCCCCEEEEeeC---CCceEEEEcCC---CeeeEEecCCCcceEEEEEcCCCcE-EEEEeCCCc
Q 021925 4 ILMKGHE-RPLTYLKYNKDGDLLFSCAK---DHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQT 75 (305)
Q Consensus 4 ~~l~~h~-~~v~~~~~~~~~~~l~s~~~---dg~v~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg~ 75 (305)
..+..|. ..+..++|+|| +.+++++. +...++|.+.. +... .+.... .+...+|+|+++. +++.+.++.
T Consensus 57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~ 133 (582)
T 3o4h_A 57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR 133 (582)
T ss_dssp EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC
T ss_pred EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC
Confidence 3455565 68999999999 77777765 45566765533 3332 443332 3446688887753 333344455
Q ss_pred EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
+.+||+.+++......... .+++|+|+|+.++.+...... ...+..+++. . .....+..|.+.+..++|+
T Consensus 134 ~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~------~-g~~~~l~~~~~~~~~~~~S 203 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLS------S-GGLRVFDSGEGSFSSASIS 203 (582)
T ss_dssp EEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT-EEEEEEEETT------T-CCCEEECCSSCEEEEEEEC
T ss_pred ceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCC------C-CCceEeecCCCccccceEC
Confidence 6699999887666555544 899999999999876542110 0223344332 1 2234667888889999999
Q ss_pred CCCCEEEEeeCCC--cEEEEeCCCCcEeeeeccccCCccceEEEE--------EcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925 156 PLNRTIISAGEDA--IVRIWDTETGKLLKESDKETGHKKTITSLA--------KAADGSHFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 156 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~ 225 (305)
|||+.|+++..++ .|++||+.+++.. .+. .+...+..++ |+|||.++++++.||++++|++ ++.
T Consensus 204 pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~ 277 (582)
T 3o4h_A 204 PGMKVTAGLETAREARLVTVDPRDGSVE-DLE---LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER 277 (582)
T ss_dssp TTSCEEEEEECSSCEEEEEECTTTCCEE-ECC---CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE
T ss_pred CCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc---CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe
Confidence 9999999888888 8999999988876 444 4555565566 9999988999999999999999 665
Q ss_pred EEEEeeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 226 IKTYVTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 226 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
.. .....+.+++|+ +++.+++++.+...
T Consensus 278 ~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p 305 (582)
T 3o4h_A 278 VE--APQGNHGRVVLW-RGKLVTSHTSLSTP 305 (582)
T ss_dssp EC--CCSSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ec--cCCCceEEEEec-CCEEEEEEcCCCCC
Confidence 54 234568899999 99998888776553
No 160
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.86 E-value=4.3e-18 Score=134.37 Aligned_cols=238 Identities=10% Similarity=0.005 Sum_probs=172.7
Q ss_pred eEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34556677788999999998 7788888999999998877 56666677889999999999988877777899999998
Q ss_pred CCCeeEEEe-----eCCCceEEEEecCCceEEEeCCcce----------eeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925 83 TGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFM----------ELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (305)
Q Consensus 83 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (305)
+++...... ....+..++++|++++.++...... .......++.+... .....+..+..
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~~~~~~~~ 172 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GTLSAPIRDRV 172 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SCEEEEECCCS
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC------CCEEEeecCCC
Confidence 887554332 1235678999999988776331000 00011233333211 22334455666
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCC-CCcE---eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 223 (305)
....++|+|+++.+++.+.++.|.+||+. +++. ...+. .+...+..++++++|+++++. ++.|.+||.. +
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~---~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT---VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC---CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee---CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence 77899999999988777778999999997 4544 22331 345566789999999866655 8899999986 7
Q ss_pred eEEEEEeeCCCeeEEEe-cCCCCcEEEeeCCcE
Q 021925 224 ELIKTYVTERPVNAVTM-SPLLDHVCIGEPQTI 255 (305)
Q Consensus 224 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~ 255 (305)
+.+..+.....+.+++| .|+++.|++++.++.
T Consensus 247 ~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l 279 (296)
T 3e5z_A 247 DELGRVLTPQTTSNLCFGGPEGRTLYMTVSTEF 279 (296)
T ss_dssp CEEEEEECSSCCCEEEEESTTSCEEEEEETTEE
T ss_pred CEEEEEECCCCceeEEEECCCCCEEEEEcCCeE
Confidence 77777774333899999 689999999887753
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=2.3e-20 Score=165.32 Aligned_cols=236 Identities=11% Similarity=0.048 Sum_probs=159.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcc-----eEEEEEcCCCcEEEEEeCC---------Cc
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-----VWCCDVSRDSMTLITGSAD---------QT 75 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~l~s~~~d---------g~ 75 (305)
.....+++|+|||++++++ ||.|++||+.+++....+.+|... ...+.|||||++|+.++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3456789999999988886 999999999999988777776543 2447899999999998876 56
Q ss_pred EEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC---CCCCceEEEEeccC------
Q 021925 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---DQGGESVLILKGPQ------ 146 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------ 146 (305)
+.+||+++++......+...+...+|+|+|+.++.+.+. .+.+++...... ...+.....+.++.
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNN------DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETT------EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECC------eEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 679999998765544466789999999999999887653 333333221100 00000001122222
Q ss_pred ---CCeeEEEEcCCCCEEEEeeCCC------------------------------------cEEEEeCCC---Cc--Eee
Q 021925 147 ---GRINRAVWGPLNRTIISAGEDA------------------------------------IVRIWDTET---GK--LLK 182 (305)
Q Consensus 147 ---~~i~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~ 182 (305)
+....+.|||||++|+.++.|. .|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 2224589999999999875321 588899988 63 222
Q ss_pred eeccc---cCCccceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCce----EE--EEE---eeCCCee-----EEEec
Q 021925 183 ESDKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLE----LI--KTY---VTERPVN-----AVTMS 241 (305)
Q Consensus 183 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~--~~~---~~~~~v~-----~~~~~ 241 (305)
.+... .++...+..++|+|||+.++.... +..|++||+.+++ +. ..+ .+...+. .++|+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 33211 136778999999999997665433 3479999999887 22 111 1343343 78999
Q ss_pred CCCCcEE-EeeCC
Q 021925 242 PLLDHVC-IGEPQ 253 (305)
Q Consensus 242 ~~~~~l~-~~~~~ 253 (305)
|||+.++ ..+..
T Consensus 328 pDG~~l~~~~s~~ 340 (740)
T 4a5s_A 328 LDGNSFYKIISNE 340 (740)
T ss_dssp TTSSEEEEEEECT
T ss_pred CCCCEEEEEEEcC
Confidence 9999877 55533
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=5.9e-20 Score=150.56 Aligned_cols=241 Identities=11% Similarity=0.019 Sum_probs=161.1
Q ss_pred cccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEE--EcCCCcEEEEE--------------
Q 021925 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--VSRDSMTLITG-------------- 70 (305)
Q Consensus 7 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~s~-------------- 70 (305)
.+|...+..+.|+|||+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++..
T Consensus 77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 34555555788999999999999999999999999988777776666565444 48899888742
Q ss_pred --------eCCCcEEEEecCCCCeeEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE
Q 021925 71 --------SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (305)
Q Consensus 71 --------~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (305)
..+..|.+||+.+++..........+..+.|+| +++.++........ .....++.+... +.....
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~-~~~~~l~~~d~~-----~~~~~~ 230 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHD-LVDARMWLINED-----GTNMRK 230 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTT-TSSCSEEEEETT-----SCCCEE
T ss_pred hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCC-CCcceEEEEeCC-----CCceEE
Confidence 244779999999998777667778889999999 99888766542100 001122322211 122233
Q ss_pred EeccC--CCeeEEEEcCCCCEEEEeeC-CC----cEEEEeCCCCcEeeeeccccCCccc---eEEEEEcCCCCEEEEE--
Q 021925 142 LKGPQ--GRINRAVWGPLNRTIISAGE-DA----IVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTG-- 209 (305)
Q Consensus 142 ~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~-- 209 (305)
+..+. ..+...+|+|+|+.|+..+. ++ .|++||+.+++...... ..++... .....|+|||+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC-----
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEee
Confidence 33333 24778899999997765443 22 39999999887433221 1111100 1123689999988754
Q ss_pred -------eCCCeEEEEEcCCceEEEEEeeCC-----------CeeEEEecCCCCcEEEeeCCc
Q 021925 210 -------SLDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 210 -------~~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~~~ 254 (305)
..+..|++||+.+++......+.. .+.+++|+|||+.|+.++..+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence 456789999999887654444444 478899999999988776543
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.3e-19 Score=148.55 Aligned_cols=236 Identities=11% Similarity=0.015 Sum_probs=158.3
Q ss_pred eEecccccceEE-----EEEcCCCCEEEEeeC-CCc--eEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc
Q 021925 4 ILMKGHERPLTY-----LKYNKDGDLLFSCAK-DHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (305)
Q Consensus 4 ~~l~~h~~~v~~-----~~~~~~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~ 75 (305)
..+..|...... .+|+|||++|+.++. +|. |.+||+.+++......++...+..+.|+||++.|+.++.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 346666666665 889999999998887 664 888899888887777666666667889999999999999999
Q ss_pred EEEEecCCCCeeEEEeeCCC-ceEE--EEecCCceEEEeCCcc-----------------eeeeeeEEEEEeecccCCCC
Q 021925 76 AKLWNVETGAQLFTFNFDSP-ARSV--DFAVGDKLAVITTDPF-----------------MELNSAIHVKRIARDPADQG 135 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~~~~~-v~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 135 (305)
|.+||+.+++.......+.. +... .+++++..++...... ......+..+++. .
T Consensus 104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~------~ 177 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK------T 177 (388)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT------T
T ss_pred EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC------C
Confidence 99999999987766664433 2223 3478888776432100 0011223333321 1
Q ss_pred CceEEEEeccCCCeeEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCcEeeeeccccCCc--cceEEEEEcCCCCEE
Q 021925 136 GESVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHF 206 (305)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l 206 (305)
+ ....+..+...+..++|+| +++.|+....+ ..|.++|...++. ..+. .+. ..+...+|+|||+.|
T Consensus 178 g-~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~---~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 178 G-ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVK---THAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp C-CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESC---CCCTTEEEEEEEECTTSSCE
T ss_pred C-ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEee---eCCCCcccccceECCCCCEE
Confidence 2 2344556677789999999 99988877653 3788888876543 3333 222 357788999999987
Q ss_pred EEEeC-CC----eEEEEEcCCceEEEEEeeCC------CeeEEEecCCCCcEEEe
Q 021925 207 LTGSL-DK----SAKLWDARTLELIKTYVTER------PVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 207 ~~~~~-dg----~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~ 250 (305)
+..+. ++ .|++||+.+++......... .....+|+|||+.|+..
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 65443 22 49999999887543322221 12334799999988865
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=7.2e-18 Score=135.07 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=167.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCC------------------------CceEEEEcCCCeeeEEec-CCCcceEEEEEcCCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKD------------------------HTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS 64 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~ 64 (305)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. ++-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888777 479999998888876665 344578999999999
Q ss_pred cEEEEEeCCCcEEEEecCCCC-eeEEEee----------CCCceEEEEec-CCceEEEeC-CcceeeeeeEEEEEeeccc
Q 021925 65 MTLITGSADQTAKLWNVETGA-QLFTFNF----------DSPARSVDFAV-GDKLAVITT-DPFMELNSAIHVKRIARDP 131 (305)
Q Consensus 65 ~~l~s~~~dg~v~vwd~~~~~-~~~~~~~----------~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 131 (305)
+++++...++.|++||..... .+..+.. -..+..++++| ++.++++.. . ...+..++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~----- 172 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFS----- 172 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEEC-----
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEc-----
Confidence 988888889999999976442 4554421 22578899999 677777663 2 12222222
Q ss_pred CCCCCceEEEEec----------cCCCeeEEEEcCC-CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925 132 ADQGGESVLILKG----------PQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200 (305)
Q Consensus 132 ~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 200 (305)
..+..+..+.. +......++++|+ ++.+++...++.|++||..+++.+..+... .+...+..++++
T Consensus 173 --~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~ 249 (329)
T 3fvz_A 173 --PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYI 249 (329)
T ss_dssp --TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEE
T ss_pred --CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeec
Confidence 11233333321 2234789999998 666777778899999999988888877432 455678899999
Q ss_pred C------CCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 201 A------DGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 201 ~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
| +|+..++...+.+|++||..+++.+..+. +...+..++++|+|.++++...++.
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE
Confidence 9 33333333345689999999999998874 4456899999999966666555554
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.84 E-value=3.3e-17 Score=128.64 Aligned_cols=230 Identities=12% Similarity=0.136 Sum_probs=164.7
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec------CCCcceEEEEE-cCCCcEEEEEeC-CCcEEEE
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------GHNGAVWCCDV-SRDSMTLITGSA-DQTAKLW 79 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~------~~~~~v~~i~~-~~~~~~l~s~~~-dg~v~vw 79 (305)
+|-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+.++++ .++++.+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455779999999999988888889999999976 66666553 23457899999 467766666543 7899999
Q ss_pred ecCCCCeeEEEee--CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCCCeeEEEEc
Q 021925 80 NVETGAQLFTFNF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWG 155 (305)
Q Consensus 80 d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~ 155 (305)
| .+++.+..+.. ...+..+++.+++.++++.... ..+..++. .++....+. .+...+..++++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-------~g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQ-------NGNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT-----TEEEEECT-------TSCEEEEEECTTTCSSEEEEEEC
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCC-----CEEEEEcC-------CCCEEEEeCCCCccCCcEEEEEC
Confidence 9 56777766642 3467899999999877665431 12222221 123333333 344568999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceEEEEEeeC--
Q 021925 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE-- 232 (305)
Q Consensus 156 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~-- 232 (305)
|+++.+++...++.|++||.. ++.+..+.. .++...+..++++++|+++++...++ .|.+||. +++.+..+...
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~ 249 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK 249 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC
T ss_pred CCCCEEEEECCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC
Confidence 999988777788999999974 555555542 12336788999999999888888776 9999995 56666666532
Q ss_pred -CCeeEEEecCCCCcEEEeeCCcE
Q 021925 233 -RPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 233 -~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
..+.+++++|+|+++++ +.++.
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ETTTE
T ss_pred CCcceeEEECCCCcEEEE-CCCCe
Confidence 23679999999986666 45554
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.84 E-value=6.2e-18 Score=136.48 Aligned_cols=221 Identities=12% Similarity=0.017 Sum_probs=151.5
Q ss_pred cceEEEEEcCCCCEEEEeeCC---C--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC------------
Q 021925 11 RPLTYLKYNKDGDLLFSCAKD---H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------------ 73 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~d---g--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------------ 73 (305)
..+..++|+|||+.|+.++.+ + .|.+|++.+++....... .. +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457789999999999987654 3 478888888776555443 34 9999999999988887642
Q ss_pred ---------------CcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee-ee-eEEEEEeecccCCCCC
Q 021925 74 ---------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NS-AIHVKRIARDPADQGG 136 (305)
Q Consensus 74 ---------------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 136 (305)
..|.+||+.+++.+..+..+ .+..+.|+|++ +++++....... .. ...++.+. .+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d------~~ 208 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE------DG 208 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE------TT
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC------CC
Confidence 57999999888763444444 88999999999 666553221000 01 22333333 11
Q ss_pred ceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--------CcEEEEeCCCCcEeeeeccccCCccceEE-EEEcCCCCEEE
Q 021925 137 ESVLILKGPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFL 207 (305)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~ 207 (305)
+ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++...... .+...+.. +.|+ ++ +++
T Consensus 209 ~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 209 K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEEET-TE-EEE
T ss_pred c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccEEc-Cc-EEE
Confidence 2 2333333 444444 9999988877644 4688888 555443333 45667876 8999 88 889
Q ss_pred EEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 208 ~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+++.++.+++| +.+++......+...|.+++|+| ..+++++.++.
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence 99999999999 88776655555667789999999 56666665553
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=5.9e-17 Score=130.01 Aligned_cols=241 Identities=10% Similarity=0.009 Sum_probs=167.6
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC----CcEEEEec
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNV 81 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~vwd~ 81 (305)
+.++...+.+++|+|+|++++++..++.|.+||.++++.......+...+.+++++|+++++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 45666778999999999988888889999999998887665544566789999999999888777666 68999999
Q ss_pred CCCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 82 ETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 82 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
++++....+. ....+..++++|++.+.++...... ......++.+... ......+......+..++|+|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-TNPLGGVYYVSPD-----FRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-TBCCEEEEEECTT-----SCCEEEEEEEESSEEEEEECTTS
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc-cCCCceEEEEeCC-----CCEEEEeecCCCcccceEECCCC
Confidence 8776653332 3346788999999987776543110 0112233333211 11122223334457889999999
Q ss_pred CEEEE-eeCCCcEEEEeCCC-CcEeeee-----ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 159 RTIIS-AGEDAIVRIWDTET-GKLLKES-----DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 159 ~~l~~-~~~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
+.++. .+.++.|.+||+.+ +.....+ ....++ ..+..++++++|+++++...++.|.+||. +++.+..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 86654 45678999999964 3322211 111112 46788999999998888878899999998 5677776663
Q ss_pred CC-------CeeEEEecCCCCcEEEeeCCc
Q 021925 232 ER-------PVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 232 ~~-------~v~~~~~~~~~~~l~~~~~~~ 254 (305)
.. .+.+++|+|+++.|++++.++
T Consensus 272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 32 588999999988877766553
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=5.8e-18 Score=137.17 Aligned_cols=228 Identities=13% Similarity=0.060 Sum_probs=155.0
Q ss_pred ecccccceEEEEEcCCCCEEEEeeC----------CCceEEEEcCCCeeeEEecCC------CcceEEEEEcCCCcEEEE
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMTLIT 69 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s 69 (305)
+..+..+ .++|+|||++++++.. ++.|.+||..+++.+.++... ......++++|||++|++
T Consensus 47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v 124 (361)
T 2oiz_A 47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVL 124 (361)
T ss_dssp EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEE
Confidence 3344444 8999999999998863 567999999999888877632 234678999999999998
Q ss_pred EeC--CCcEEEEecCCCCeeEE-EeeCC----------CceEEEEecCCceEEEeCCcceeeee----------------
Q 021925 70 GSA--DQTAKLWNVETGAQLFT-FNFDS----------PARSVDFAVGDKLAVITTDPFMELNS---------------- 120 (305)
Q Consensus 70 ~~~--dg~v~vwd~~~~~~~~~-~~~~~----------~v~~~~~~~~~~~~~~~~~~~~~~~~---------------- 120 (305)
+.. ++.|.+||+++++.+.. +.... ...-+++++++..+....+.......
T Consensus 125 ~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 204 (361)
T 2oiz_A 125 QNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIF 204 (361)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBC
T ss_pred ECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceE
Confidence 864 58999999999988777 44322 12335556666655544321000000
Q ss_pred -----------------eEEEEEeecccCCCCCceEEEEec------c----CCCeeEEEEcCCCCEEEEeeC-------
Q 021925 121 -----------------AIHVKRIARDPADQGGESVLILKG------P----QGRINRAVWGPLNRTIISAGE------- 166 (305)
Q Consensus 121 -----------------~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~i~~~~~~~~~~~l~~~~~------- 166 (305)
.+...++. .........+.. + ......++++|+++.++++..
T Consensus 205 ~~~~~~g~~~~~~~~~~~v~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 205 IAPALDKDKAHFVSYYGNVYSADFS----GDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCCEECSSEEEEEBTTSEEEEEECS----SSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred EEecccCCEEEEEeCCCeEEEEEec----CCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 00000000 000000000000 0 011123789999887776543
Q ss_pred ----CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eEEEEE-eeCCCeeEEE
Q 021925 167 ----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTY-VTERPVNAVT 239 (305)
Q Consensus 167 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~v~~~~ 239 (305)
.+.|.+||+.+++.+..+. .+. +.+++|+|+|++|++++. +.|.+||..++ +.+.++ ..+.....++
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~---~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIP---GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEE---CTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ccCCCceEEEEECCCCcEEEEEe---cCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 3489999999999999887 343 899999999999998887 99999999999 999987 4777789999
Q ss_pred ecCCCC
Q 021925 240 MSPLLD 245 (305)
Q Consensus 240 ~~~~~~ 245 (305)
++|+|+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999986
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=163.80 Aligned_cols=237 Identities=9% Similarity=-0.023 Sum_probs=154.0
Q ss_pred ceEEEEEcCCCCEEEEeeC---------CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 12 PLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.+++|||||++|++++. ++.|++||+.+++.+.... ....+..++|+|||+.|+++. ++.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 3899999999999998876 7899999999887631111 135688999999999999886 6899999998
Q ss_pred CCCeeEEEeeC-------------------CCceEEEEecCCceEEEeCCcce--e------------------------
Q 021925 83 TGAQLFTFNFD-------------------SPARSVDFAVGDKLAVITTDPFM--E------------------------ 117 (305)
Q Consensus 83 ~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~--~------------------------ 117 (305)
+++........ ....+++|+|+|+.++.+..... .
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 88765433211 11258999999999888653210 0
Q ss_pred ---eeeeEEEEEeecccCCCCCceE---EEEeccCCCeeEEEEcCCCCEEEEeeCC----CcEEEEe----CCCCcEeee
Q 021925 118 ---LNSAIHVKRIARDPADQGGESV---LILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWD----TETGKLLKE 183 (305)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~ 183 (305)
....+.++++....... ...+ ..+.+|...+..++|+||++.+++.... ..|.+|| ..+++....
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVG-PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHC-CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCeeEEEEEECCCCCccc-eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 01123333332110000 0000 1123467778999999998777764432 2488999 777765544
Q ss_pred ec-cccCCccceE-----EEEEcCCCCEEEE--EeCCC--eEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeC
Q 021925 184 SD-KETGHKKTIT-----SLAKAADGSHFLT--GSLDK--SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 184 ~~-~~~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+. ....+...+. .+.|+|||+.|+. +..+| .|++||+.+++. ..+. +...+..+.++ +++.|+..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEe
Confidence 31 0014555555 7899999996654 44455 577788877663 3333 44557777777 8887777665
Q ss_pred C
Q 021925 253 Q 253 (305)
Q Consensus 253 ~ 253 (305)
+
T Consensus 376 ~ 376 (719)
T 1z68_A 376 E 376 (719)
T ss_dssp C
T ss_pred c
Confidence 4
No 170
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=9.6e-18 Score=136.15 Aligned_cols=219 Identities=13% Similarity=0.131 Sum_probs=144.0
Q ss_pred cccceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEEe------c--------CCCcceEEEEEcCCCcEEEEEe-C
Q 021925 9 HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTY------R--------GHNGAVWCCDVSRDSMTLITGS-A 72 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~------~--------~~~~~v~~i~~~~~~~~l~s~~-~ 72 (305)
+......+++ ++++|++++ .++.|.+|++.....+..+ . .+...+.+++|+|+|++|++++ .
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 4456677777 788777766 5789999999754332211 1 1123468899999999776555 4
Q ss_pred CCcEEEEecCCCCe------e--------EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce
Q 021925 73 DQTAKLWNVETGAQ------L--------FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138 (305)
Q Consensus 73 dg~v~vwd~~~~~~------~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (305)
++.|.+|++..... + ........+..++|+|+++.++++... ...+.++++... ....
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~~~g----~~~~ 247 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI----GGTVIAFRYADG----MLDE 247 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----TCEEEEEEEETT----EEEE
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC----CCeEEEEEecCC----ceEE
Confidence 88999999875442 1 122245567899999999977766521 234555555411 0111
Q ss_pred EEEEe---ccCCCeeEEEEcCCCCEEEEeeCC--CcEEEEeCC--CCc--EeeeeccccCCccceEEEEEcCCCCEEEEE
Q 021925 139 VLILK---GPQGRINRAVWGPLNRTIISAGED--AIVRIWDTE--TGK--LLKESDKETGHKKTITSLAKAADGSHFLTG 209 (305)
Q Consensus 139 ~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 209 (305)
...+. .+......++|+|+|++|+++..+ +.|.+|++. +++ .+..+. . ...+..++|+|+|++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~---~-g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL---T-GIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE---C-SSCCCEEEECTTSCEEEEE
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec---C-CCCCceEEECCCCCEEEEE
Confidence 22222 223456799999999998776654 899999996 344 333333 2 4567889999999998888
Q ss_pred e-CCCeEEEE--EcCCceEEEEEe--eCCCeeEEEec
Q 021925 210 S-LDKSAKLW--DARTLELIKTYV--TERPVNAVTMS 241 (305)
Q Consensus 210 ~-~dg~i~iw--d~~~~~~~~~~~--~~~~v~~~~~~ 241 (305)
+ .++.|.+| |..+++...... +...+.|++|.
T Consensus 324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7 57899996 555676654432 34467888875
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=1.9e-18 Score=141.87 Aligned_cols=228 Identities=11% Similarity=-0.046 Sum_probs=152.8
Q ss_pred EEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEE-------------------EEEcCCCcEEEEE----
Q 021925 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-------------------CDVSRDSMTLITG---- 70 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~s~---- 70 (305)
..+.|+|||+.|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 34789999999999999999999999988766655544443333 3567777766554
Q ss_pred -eCCCcEEEEecCCCCeeEEEeeCCCceEEEEec-CCceEEEeCCcce-eeeeeEEEEEeecccCCCCCceEEEEecc--
Q 021925 71 -SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFM-ELNSAIHVKRIARDPADQGGESVLILKGP-- 145 (305)
Q Consensus 71 -~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (305)
..+..|.+||+.+++..........+..+.|+| ++..++....... .....+..++.. . .....+..+
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------~-~~~~~l~~~~~ 236 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED------G-SNVRKIKEHAE 236 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT------S-CCCEESSCCCT
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC------C-CceeEeeccCC
Confidence 356789999999988777667778889999999 7776655543111 000223333321 1 111222222
Q ss_pred CCCeeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEEe---------
Q 021925 146 QGRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS--------- 210 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--------- 210 (305)
...+..++|+|+|++|+.++.+ +.|++||+.+++...... .. ... +.|+| +|+++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeecc
Confidence 2347788999999988776543 449999998876543322 11 123 88999 999888754
Q ss_pred -------CCCeEEEEEcCCceEEEEEeeCC-----------CeeEEEecCCCCcEEEeeCCc
Q 021925 211 -------LDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 211 -------~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~~~ 254 (305)
.++.|++||+.+++......+.. .+..++|+|+|+.|+.++..+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 34789999998877543333333 256789999999988876543
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.81 E-value=5.7e-17 Score=126.16 Aligned_cols=212 Identities=12% Similarity=0.039 Sum_probs=163.4
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-cceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC--CCce
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPAR 97 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~v~ 97 (305)
.++.|++++.|+.|++||.++++.+.++..+. ..+.++.++|+|+.++ +.++.|..||. +++.+..+..+ ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45789999999999999999999999998766 4789999999999888 34678999998 89999988854 4677
Q ss_pred EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe------ccCCCeeEEEEcCCCCEEEEeeCCCcEE
Q 021925 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK------GPQGRINRAVWGPLNRTIISAGEDAIVR 171 (305)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 171 (305)
++.+.++++.+++.... ...+..+. ..++.+..+. .+......++..++|+++++...++.|.
T Consensus 81 ~~~~~~dG~~lv~~~~~------~~~v~~vd-----~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 81 TARILPDGNALVAWCGH------PSTILEVN-----MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp EEEECTTSCEEEEEEST------TEEEEEEC-----TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred ccEECCCCCEEEEecCC------CCEEEEEe-----CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEE
Confidence 88999999998886541 11111111 1223332222 1223455677899999999999999999
Q ss_pred EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-C------CCeeEEEecCCC
Q 021925 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-E------RPVNAVTMSPLL 244 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~------~~v~~~~~~~~~ 244 (305)
.||.. ++.+.++.. ...+.++...++|+.+++++.+++|..+|..+++.+.++.. . ..+..++..++|
T Consensus 150 ~~d~~-G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 150 EIAPN-GQLLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp EECTT-SCEEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred EECCC-CCEEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence 99998 999888862 23455677889999999999889999999999999999862 1 126788889999
Q ss_pred CcEEEee
Q 021925 245 DHVCIGE 251 (305)
Q Consensus 245 ~~l~~~~ 251 (305)
..+++..
T Consensus 225 ~i~v~~~ 231 (276)
T 3no2_A 225 GLYICNW 231 (276)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 8887764
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=3.8e-18 Score=149.48 Aligned_cols=247 Identities=10% Similarity=-0.051 Sum_probs=163.9
Q ss_pred EecccccceEEEEEcCCCCEEEEe--eCCCceEEEEcCCCeeeEEecCCCcceE---------EEEEc--CCCcE-EEEE
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVW---------CCDVS--RDSMT-LITG 70 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~---------~i~~~--~~~~~-l~s~ 70 (305)
.+.+|...+..+++++++-++++. +.++...||....+.....+..|...+. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 367899999999999887667766 5688899998655555667776766666 56665 99988 7765
Q ss_pred eC-CCcEEEEecC--C-CCeeEEEe-----eCCCceEEEEecCCceEEEeCCcce-----eeeeeEEEEEeecccCCCCC
Q 021925 71 SA-DQTAKLWNVE--T-GAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHVKRIARDPADQGG 136 (305)
Q Consensus 71 ~~-dg~v~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 136 (305)
+. +..|.++++. + ++...... +...+..++|+|+++.++.+..... .....+..+++..... ...
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA-ADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT-TCG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc-ccC
Confidence 54 5667777765 3 44322222 2345778999999998887764210 1112333343321000 000
Q ss_pred ceEEEEe-ccCCCeeEEEEcCCCCEEEEeeCC--------CcEEEEeCC-CCc--EeeeeccccCCccceEEEEEcCCCC
Q 021925 137 ESVLILK-GPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTE-TGK--LLKESDKETGHKKTITSLAKAADGS 204 (305)
Q Consensus 137 ~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (305)
.....+. .+...+..++|+|||++|+.++.+ ..|++||+. +++ ....+. .++...+..++|+|||+
T Consensus 177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEEEEECTTSC
T ss_pred CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcceEECCCCe
Confidence 1223444 555678889999999999987754 379999998 562 233332 13567899999999999
Q ss_pred EEEEEeCCC--eEEEEEcCCceEEEEEeeCCC---------eeEEEecCCCCcEEEeeCCcE
Q 021925 205 HFLTGSLDK--SAKLWDARTLELIKTYVTERP---------VNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 205 ~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~~~~ 255 (305)
++++++.++ .|++||+.+++......+... +.+++|+|+++++++++. +.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 888888888 677777767765544332221 467889999998888876 54
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=1.4e-17 Score=145.96 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=153.3
Q ss_pred eEecccccceE---------EEEEc--CCCCE-EEEeeC-CCceEEEEcC--CCeeeEEecC-----CCcceEEEEEcCC
Q 021925 4 ILMKGHERPLT---------YLKYN--KDGDL-LFSCAK-DHTPTVWFAD--NGERLGTYRG-----HNGAVWCCDVSRD 63 (305)
Q Consensus 4 ~~l~~h~~~v~---------~~~~~--~~~~~-l~s~~~-dg~v~iw~~~--~~~~~~~~~~-----~~~~v~~i~~~~~ 63 (305)
..+..|...+. ...|+ |||+. |+.++. +..|.++++. .......+.. |...+.+++|+||
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence 44566666666 66666 99998 776554 4566666654 2033455555 6778999999999
Q ss_pred CcEEEEEeCC----------CcEEEEecCC------CCeeEEE-eeCCCceEEEEecCCceEEEeCCcce-e--eeeeEE
Q 021925 64 SMTLITGSAD----------QTAKLWNVET------GAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFM-E--LNSAIH 123 (305)
Q Consensus 64 ~~~l~s~~~d----------g~v~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 123 (305)
|+.|++++.+ ..|.+||+.+ ++..... .....+..++|+|+++.++....... . ....+.
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~ 220 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELK 220 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEE
Confidence 9999998876 5899999987 5544333 34456778899999998876652211 0 012344
Q ss_pred EEEeecccCCCCC---ceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC--cEEEEeCCCCcEeeeeccccCCccc-----
Q 021925 124 VKRIARDPADQGG---ESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDKETGHKKT----- 193 (305)
Q Consensus 124 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~----- 193 (305)
++++.. .+ +.......+...+..+.|+|||+++++++.++ .|.+||+.+++...... .+...
T Consensus 221 ~~d~~~-----~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w 292 (662)
T 3azo_A 221 TARVTE-----DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLW 292 (662)
T ss_dssp EEEECT-----TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCC
T ss_pred EEEECC-----CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccc
Confidence 444431 12 23334445578899999999999877888888 67777776666544332 12111
Q ss_pred ---eEEEEEcCCCCEEEEEeCCCeEEEE--EcCCceEEEEEe-eCCCeeEEEecCCCCc
Q 021925 194 ---ITSLAKAADGSHFLTGSLDKSAKLW--DARTLELIKTYV-TERPVNAVTMSPLLDH 246 (305)
Q Consensus 194 ---v~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 246 (305)
+..++|+|+++++++++. +.+++| |+.+++ +..+. +...+..+ ++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~ 348 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTR 348 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTE
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCE
Confidence 567899999999999998 999999 655555 45554 44556665 1444443
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=5.7e-17 Score=143.03 Aligned_cols=238 Identities=10% Similarity=-0.029 Sum_probs=160.9
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCC-----ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc-------
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDH-----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT------- 75 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~------- 75 (305)
+|...+..++|||||++||.++.++ .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445688999999999998776543 8999999999876533222 23678999999999999888766
Q ss_pred ---------EEEEecCCCCee--EEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCC-CCceEE
Q 021925 76 ---------AKLWNVETGAQL--FTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVL 140 (305)
Q Consensus 76 ---------v~vwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 140 (305)
|++|++.+++.. ..+. ++.....+.|+|+++.++............+.++++....... ......
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999887632 2223 2334678999999998887754221112334444443200000 111344
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEeeCC----CcEEEEeCCCCcE--eeeeccccCCc--cceEEEEEcCCCCEEEEEeCC
Q 021925 141 ILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWDTETGKL--LKESDKETGHK--KTITSLAKAADGSHFLTGSLD 212 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d 212 (305)
.+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.++.. ...+. .+. ..+..++|++++.++++...|
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV---PEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc---CCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 55566665554 588999887766553 3699999987642 23332 232 368889999888888888888
Q ss_pred Ce--EEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEe
Q 021925 213 KS--AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 213 g~--i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 250 (305)
+. |++||+.+++.+..+. +...+..++++|+++.++..
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence 85 6667876787766666 45567889999999876644
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=3.1e-17 Score=133.38 Aligned_cols=204 Identities=7% Similarity=-0.034 Sum_probs=136.7
Q ss_pred ceEEEEEcCCCCE--EEEee-------------CCCceEEEEcC-CCeeeEEec----CCCcceEEEEEcCCCcEEEEEe
Q 021925 12 PLTYLKYNKDGDL--LFSCA-------------KDHTPTVWFAD-NGERLGTYR----GHNGAVWCCDVSRDSMTLITGS 71 (305)
Q Consensus 12 ~v~~~~~~~~~~~--l~s~~-------------~dg~v~iw~~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~l~s~~ 71 (305)
.+.+++|+|+|++ ++++. .+|.+.+|++. +++....+. .+...+.+++|+|||++|++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 3566899999994 55553 68999999997 465544443 2456799999999999888765
Q ss_pred C-CCcEEEEecC-CCCeeE--EEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE---EE
Q 021925 72 A-DQTAKLWNVE-TGAQLF--TFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV---LI 141 (305)
Q Consensus 72 ~-dg~v~vwd~~-~~~~~~--~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 141 (305)
. ++.|.+||+. +++... .+. +...+..++|+|+++.++++... ...+.+++.... .++.. ..
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~----~~~v~v~~~~~~----~g~~~~~~~~ 235 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA----GNRICEYVIDPA----THMPVYTHHS 235 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT----TTEEEEEEECTT----TCCEEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC----CCeEEEEEEeCC----CCcEEEccce
Confidence 4 6799999998 676532 233 14568899999999988776431 123344443210 11111 11
Q ss_pred Ee-------ccCC------CeeEEE-EcCCCCEEEEeeCCC------cEEEEeCC-CCcEeeeeccccCCccceEEEEEc
Q 021925 142 LK-------GPQG------RINRAV-WGPLNRTIISAGEDA------IVRIWDTE-TGKLLKESDKETGHKKTITSLAKA 200 (305)
Q Consensus 142 ~~-------~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~ 200 (305)
+. ++.. .+..++ |+|+|++|++++.+. .|.+|++. +++..........+...+..++|+
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s 315 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS 315 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence 11 1222 478899 999999988776432 89999996 565433111011234455678999
Q ss_pred C---CCCEEEEEeCC-CeEEEEEcCCc
Q 021925 201 A---DGSHFLTGSLD-KSAKLWDARTL 223 (305)
Q Consensus 201 ~---~~~~l~~~~~d-g~i~iwd~~~~ 223 (305)
| +|++|++++.+ +.|.+|++...
T Consensus 316 p~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 316 PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9 89999998875 89999998765
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=3.4e-17 Score=134.39 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCEEEEeeCC---CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 13 LTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
+..++|+|||++|+.+... ..|.+||+.+++.......+......+.|+|||+.|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7788999999998877543 3688889888876544333333233478999999999999999999999998876655
Q ss_pred EeeCCCceEEEEecCCceEEEeCCcc-----------------e--------eeeeeEEEEEeecccCCCCCceEEEEec
Q 021925 90 FNFDSPARSVDFAVGDKLAVITTDPF-----------------M--------ELNSAIHVKRIARDPADQGGESVLILKG 144 (305)
Q Consensus 90 ~~~~~~v~~~~~~~~~~~~~~~~~~~-----------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (305)
...+.. +++++..++...... . .....+..+++. .++ ...+..
T Consensus 118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~------~g~-~~~~~~ 185 (396)
T 3c5m_A 118 YTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE------TGE-LEVIHQ 185 (396)
T ss_dssp EECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT------TCC-EEEEEE
T ss_pred Eecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC------CCc-EEeecc
Confidence 553322 444444443321100 0 011122222221 122 233335
Q ss_pred cCCCeeEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----
Q 021925 145 PQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----- 212 (305)
Q Consensus 145 ~~~~i~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 212 (305)
+...+..+.|+| +++.|+..+.+ ..|.+||+..++.. .+.. ......+..++|+|+|+.|+.++.+
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-cCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 667789999999 78877766543 46889998765433 2321 0113468889999999988777654
Q ss_pred CeEEEEEcCCceEEEEEeeCCCeeEEEecC-CCCcEEEee
Q 021925 213 KSAKLWDARTLELIKTYVTERPVNAVTMSP-LLDHVCIGE 251 (305)
Q Consensus 213 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 251 (305)
+.|++||+.+++........ ... +.|+| +|+++++++
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp EEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEE
T ss_pred ceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEec
Confidence 45999999988765433322 233 89999 999888754
No 178
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=2e-17 Score=146.51 Aligned_cols=242 Identities=9% Similarity=-0.017 Sum_probs=152.9
Q ss_pred Eecccccc-----eEEEEEcCCCCEEEEeeCC---------CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE
Q 021925 5 LMKGHERP-----LTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG 70 (305)
Q Consensus 5 ~l~~h~~~-----v~~~~~~~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 70 (305)
++.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+.||.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~ 129 (740)
T 4a5s_A 51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV 129 (740)
T ss_dssp EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE
T ss_pred EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE
Confidence 35566532 2448899999999998876 56679999998864 466678889999999999999988
Q ss_pred eCCCcEEEEecCCCCeeEEEeeC-------------------CCceEEEEecCCceEEEeCCcce--ee-----------
Q 021925 71 SADQTAKLWNVETGAQLFTFNFD-------------------SPARSVDFAVGDKLAVITTDPFM--EL----------- 118 (305)
Q Consensus 71 ~~dg~v~vwd~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~--~~----------- 118 (305)
. |+.|++|++.+++........ .....+.|+|||+.++....... ..
T Consensus 130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~ 208 (740)
T 4a5s_A 130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (740)
T ss_dssp E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence 5 689999999887754422211 12235899999998887642111 00
Q ss_pred ----------------e--eeEEEEEeecccCCCCCc--eEEEEe------ccCCCeeEEEEcCCCCEEEEeeC----CC
Q 021925 119 ----------------N--SAIHVKRIARDPADQGGE--SVLILK------GPQGRINRAVWGPLNRTIISAGE----DA 168 (305)
Q Consensus 119 ----------------~--~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----dg 168 (305)
. ..+.++++.... .++ ....+. ++...+..++|+|||+.++.... +.
T Consensus 209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~ 285 (740)
T 4a5s_A 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS---SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS 285 (740)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEETTSCC---SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred CCCcceeecCCCCcCcCCeeEEEEEECCCCC---CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence 0 012222221100 011 222333 26677899999999996665432 34
Q ss_pred cEEEEeCCCCc----Eeeeecc-ccCCccceE-----EEEEcCCCCEEE-EEeC-C--CeEEEEEcCCceEEEEEeeCCC
Q 021925 169 IVRIWDTETGK----LLKESDK-ETGHKKTIT-----SLAKAADGSHFL-TGSL-D--KSAKLWDARTLELIKTYVTERP 234 (305)
Q Consensus 169 ~i~iwd~~~~~----~~~~~~~-~~~~~~~v~-----~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~ 234 (305)
.|++||+.+++ +...... ...+...+. ..+|+|||+.|+ ..+. + ..|++||+.+++..........
T Consensus 286 ~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~ 365 (740)
T 4a5s_A 286 VMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE 365 (740)
T ss_dssp EEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSC
T ss_pred EEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEE
Confidence 79999999887 2221110 013444433 678999999877 6654 3 4688999887766544444445
Q ss_pred eeEEEecCCCCcEEEeeC
Q 021925 235 VNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~ 252 (305)
+..+.. ++++.|+..+.
T Consensus 366 v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 366 VIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp EEEEEE-ECSSEEEEEES
T ss_pred EEEEEE-EeCCEEEEEEe
Confidence 555432 44666555443
No 179
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1.3e-15 Score=118.47 Aligned_cols=228 Identities=7% Similarity=-0.090 Sum_probs=151.1
Q ss_pred ceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
...+++++++|++++ +.+.++.|.+|+..++........+...+.+++++++++.+++.. ++.|.+||..+... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 678999999999777 547788999998765443222223335678999999998666655 88999999876543 333
Q ss_pred e--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC
Q 021925 91 N--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (305)
Q Consensus 91 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 168 (305)
. ....+..+++.+++.+.++... ...+..++. ...............+..++++|+++.+++...++
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~------~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 171 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAA------GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN 171 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGG-----GTEEEEECT------TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGT
T ss_pred ecCCcCCCcceEECCCCCEEEEECC-----CCEEEEEEC------CCceeEeeccccCCCceeEEEeCCCCEEEEECCCC
Confidence 2 2256789999999886665432 112222211 11111111122334678899999999777777788
Q ss_pred cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcE
Q 021925 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHV 247 (305)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 247 (305)
.|.+||........... .+...+..++++++|.++++...++.|.+||........... ....+.+++++|+|+++
T Consensus 172 ~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp EEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred EEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 99999988765543322 233678899999999777777778899999987654433222 23568999999999866
Q ss_pred EEeeCCcE
Q 021925 248 CIGEPQTI 255 (305)
Q Consensus 248 ~~~~~~~~ 255 (305)
++...++.
T Consensus 249 v~~~~~~~ 256 (270)
T 1rwi_B 249 VADRGNDR 256 (270)
T ss_dssp EEEGGGTE
T ss_pred EEECCCCE
Confidence 66665555
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=1.4e-14 Score=117.39 Aligned_cols=229 Identities=10% Similarity=0.018 Sum_probs=145.9
Q ss_pred CCCEEEEee------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC----------CCcEEEEecCCC
Q 021925 21 DGDLLFSCA------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA----------DQTAKLWNVETG 84 (305)
Q Consensus 21 ~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~----------dg~v~vwd~~~~ 84 (305)
++++++... .|+.|.+||..+++.+.++..+..+ .++|+||++++++++. ++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566666653 3679999999999998888876655 8999999999988863 677999999999
Q ss_pred CeeEEEeeC-------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-Ee-------------
Q 021925 85 AQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LK------------- 143 (305)
Q Consensus 85 ~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------- 143 (305)
+.+..+... .....++++|++++++++... ....+.++++... +.+.. +.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~~~v~v~d~~~~------~~~~~~i~~~~~~~v~~~p~~ 162 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PATSIGIVDVAKG------DYVEDVTAAAGCWSVIPQPNR 162 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SSEEEEEEETTTT------EEEEEEGGGTTEEEEEECTTS
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CCCeEEEEECCCC------cEEEEEecCCCcceeEEcCCC
Confidence 998888743 467889999999999887421 0122333332211 11111 00
Q ss_pred -------ccCCCeeEEE---------------------------EcCCCCEEEEeeCCCcEEEEeCCCCcE--eeeeccc
Q 021925 144 -------GPQGRINRAV---------------------------WGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKE 187 (305)
Q Consensus 144 -------~~~~~i~~~~---------------------------~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~ 187 (305)
...+.+..+. .+|++..++..+.++.|.++|+..... ...+...
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 242 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLL 242 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccccc
Confidence 0011111111 123333444444556666777654321 1111100
Q ss_pred c---CC----ccceEEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEE
Q 021925 188 T---GH----KKTITSLAKAADGSHFLTGSL-----------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 188 ~---~~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 249 (305)
. .. ......++++|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|+|++|++
T Consensus 243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLT 321 (361)
T ss_dssp CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEE
T ss_pred CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEE
Confidence 0 00 011112688999888776643 3589999999999999998666 999999999999998
Q ss_pred eeCCcEEEEEEeehhhhh
Q 021925 250 GEPQTIKFMLLVYLFVLF 267 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (305)
++. +. +.+|+..
T Consensus 322 ~n~-~~-----v~v~D~~ 333 (361)
T 2oiz_A 322 LDG-GN-----VNVYDIS 333 (361)
T ss_dssp ECS-SC-----EEEEECS
T ss_pred eCC-Ce-----EEEEECC
Confidence 876 44 4555443
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=4.3e-16 Score=137.10 Aligned_cols=230 Identities=13% Similarity=-0.029 Sum_probs=153.4
Q ss_pred ccccceEEEEEcCCCCEEE-----EeeCCCceEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeCCCc-----
Q 021925 8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQT----- 75 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~-----s~~~dg~v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~dg~----- 75 (305)
+|...+..++|||||++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4666799999999999998 34445789999999988651 1111222 67899999999999988776
Q ss_pred --------EEEEecCCCCe--eEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 76 --------AKLWNVETGAQ--LFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 76 --------v~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
|++|++.+++. ...+. ....+..+.++|+++.++....... ....++.+.. .. .....+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---~~~~l~~~~~----~~-~~~~~l 267 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW---SENDVYWKRP----GE-KDFRLL 267 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT---TEEEEEEECT----TC-SSCEEE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC---CceEEEEEcC----CC-CceEEe
Confidence 99999988763 23333 2346789999999998887653221 1223333311 11 234445
Q ss_pred eccCCCeeEEEEcCCCCEEEEee---CCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 143 KGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
..+...+....+ +++++++... .++.|.+||+.+++. ...+... .....+..++++ ++.++++...|+..++
T Consensus 268 ~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 268 VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-DSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC-CSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC-CCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 556666666666 5566444443 258899999987653 1222210 124567888888 6778889999999888
Q ss_pred EEcC-CceEEEEEe-e-CCCeeEEEecCCCCcEEEe
Q 021925 218 WDAR-TLELIKTYV-T-ERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 218 wd~~-~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~ 250 (305)
|.+. +++....+. + ...+..++++|+++.++..
T Consensus 345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYV 380 (695)
T ss_dssp EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEE
T ss_pred EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEE
Confidence 8665 455555554 2 4567888999999877644
No 182
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.72 E-value=9.1e-14 Score=109.57 Aligned_cols=238 Identities=10% Similarity=0.011 Sum_probs=160.2
Q ss_pred ecccccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+..+..--.+..|+|+ +.++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 3445556678999995 45666666789999999887765 3333 4567999999999985554 4 567999999877
Q ss_pred CeeEEEeeC-----CCceEEEEecCCceEEEeCCccee----eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 85 AQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFME----LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 85 ~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
+........ ..+..+++.|++++.+........ ......++.+... ++ ...+.......+.++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~-~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HH-VKKYFDQVDISNGLDWS 157 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SC-EEEEEEEESBEEEEEEC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-----CC-EEEEeeccccccceEEc
Confidence 654333321 236778999999876654321100 0112233433221 12 22233344556889999
Q ss_pred CCCCEEE-EeeCCCcEEEEeC--CCCcEe--eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 156 PLNRTII-SAGEDAIVRIWDT--ETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 156 ~~~~~l~-~~~~dg~i~iwd~--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
|+++.|+ +.+.++.|.+||+ .++... +.+.....+...+..++++++|++.++....+.|..||..+++.+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 9998765 4455789999997 455432 1222111234567889999999888887778899999999999988888
Q ss_pred eC-CCeeEEEec-CCCCcEEEeeCC
Q 021925 231 TE-RPVNAVTMS-PLLDHVCIGEPQ 253 (305)
Q Consensus 231 ~~-~~v~~~~~~-~~~~~l~~~~~~ 253 (305)
.. ..+++++|. |+++.|.+++..
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCCceEEEEeCCCCCEEEEEcCC
Confidence 44 679999998 898887776543
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=5.6e-15 Score=118.44 Aligned_cols=232 Identities=10% Similarity=0.004 Sum_probs=157.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
...|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||.++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 3457889999998888887889999999 3566677777777889999999999878888899999999988876554
Q ss_pred E-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe--ccCCCeeEEEEcCCCCEEEEeeC
Q 021925 90 F-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 90 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
. .....+.+++++++++++++...... ....+..++.. .......+. .+...+..++++|+++.+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~-~~~~i~~~d~~------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 154 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFK-STGGIFAATEN------GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR 154 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSS-SCCEEEEECTT------SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCC-CCceEEEEeCC------CCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence 4 35677899999999987777654200 00122222211 111111221 23456889999999987776653
Q ss_pred ------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE-EEeCCCeEEEEEcCC-ceEEEEE------e--
Q 021925 167 ------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDART-LELIKTY------V-- 230 (305)
Q Consensus 167 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~------~-- 230 (305)
.+.|..+|..+++...... ....+..++|+|+++.|+ +.+.++.|++||+.+ ++.+..+ .
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp CBTTBCCEEEEEECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred ccccCCCceEEEEeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 3567777766554433222 334578899999998664 445688999999863 3322211 1
Q ss_pred eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 231 TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 231 ~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
....+..++++++|++.++...++.
T Consensus 231 ~~~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 231 GHEGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp SSSEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCCCCCceEECCCCCEEEEEcCCCE
Confidence 1135788999999987776655554
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=3.1e-14 Score=113.83 Aligned_cols=222 Identities=10% Similarity=-0.062 Sum_probs=154.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
....+.+. +++..++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||.++++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 45677774 34555566667999999999999988886 34668999999988544544478999999999998888887
Q ss_pred eCC------CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 92 FDS------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 92 ~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
... ....+++ .++.+.++... ....+.+.+.. ..+....+.. ......++++|+|++++++.
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~----~~~~v~viD~~------t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKYVYVNCWS----YQNRILKIDTE------TDKVVDELTI-GIQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTEEEEEECT----TCCEEEEEETT------TTEEEEEEEC-SSCBCCCEECTTSEEEEEBC
T ss_pred cCCccccCCCcceEEE-ECCEEEEEcCC----CCCEEEEEECC------CCeEEEEEEc-CCCccceEEcCCCCEEEEEC
Confidence 655 6777887 45555444321 12233333322 2233333332 23456789999998777766
Q ss_pred CC----------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE--Eee-C
Q 021925 166 ED----------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT--YVT-E 232 (305)
Q Consensus 166 ~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-~ 232 (305)
.+ +.|.++|..+++....+... .......++++|+++.|+++.. .|.+||..+++.... +.. .
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~ 266 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRD 266 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCS
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCC
Confidence 54 78999999998877766421 1246889999999998888765 899999988876421 111 4
Q ss_pred CCeeEEEecCCCCcEEEee
Q 021925 233 RPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~ 251 (305)
.....++++|++..|.++.
T Consensus 267 ~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 267 TKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp SCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEcCCCCeEEEEc
Confidence 5688999999666666665
No 185
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=5.6e-14 Score=111.60 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=158.3
Q ss_pred ecccccceEEEEEcCCCCEEEE-------eeCCCceEEEEcCCCeeeEEec----CCCcceEEEEEcCC-CcEEEEEeCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFS-------CAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSAD 73 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s-------~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~s~~~d 73 (305)
+.+.-....+++|+++|+.+++ +..++.|.+||..+++...... ++...+.+++++++ ++++++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 3444556789999999988887 6778999999987777543222 24467899999999 76555444 4
Q ss_pred CcEEEEecCCCCeeEE-Ee-----eCCCceEEEEecCCceEEEeCCcce--------eeeeeEEEEEeecccCCCCCceE
Q 021925 74 QTAKLWNVETGAQLFT-FN-----FDSPARSVDFAVGDKLAVITTDPFM--------ELNSAIHVKRIARDPADQGGESV 139 (305)
Q Consensus 74 g~v~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 139 (305)
+.|.+||.+ ++.... .. ....+.++++.+++.+.++...... .......++.+.. .++.
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~g~~- 164 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----DGQM- 164 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----TSCE-
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC-----CCCE-
Confidence 479999988 654432 22 1234789999999987776643210 0000122333321 1122
Q ss_pred EEEeccCCCeeEEEEc----CCCCEEEEe-eCCCcEEEEeCC-CCcEe--eeeccccCCc-cceEEEEEcCCCCEEEEEe
Q 021925 140 LILKGPQGRINRAVWG----PLNRTIISA-GEDAIVRIWDTE-TGKLL--KESDKETGHK-KTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 140 ~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~iwd~~-~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 210 (305)
..+..+......++++ |+++.++.+ ..++.|.+||+. +++.. ..+.....+. ..+..++++++|+++++..
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 2223334456889999 999766555 567899999986 44321 1111111333 5678899999999888887
Q ss_pred CCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCC
Q 021925 211 LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
.++.|.+||.++++.+..+. +...+.+++++|+++.|.+++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 88999999998787766666 44678999999999967666544
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=2.1e-14 Score=112.52 Aligned_cols=200 Identities=12% Similarity=0.138 Sum_probs=142.1
Q ss_pred ccccceEEEEE-cCCCCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 8 GHERPLTYLKY-NKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 8 ~h~~~v~~~~~-~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+|...+.++++ .++++++++... ++.|++|| .+++.+..+.. +...+.+++++|+++.+++...++.|.+||.. +
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 151 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G 151 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C
Confidence 34567899999 577776666543 88999999 56777766643 44578999999999888887788999999964 5
Q ss_pred CeeEEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc--CCCeeEEEEcCCCC
Q 021925 85 AQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWGPLNR 159 (305)
Q Consensus 85 ~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~ 159 (305)
+.+..+.. ...+..+++++++.++++... ...+..++. .++.+..+..+ ...+..++++|+++
T Consensus 152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~-------~g~~~~~~~~~g~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----AHCVKVFNY-------EGQYLRQIGGEGITNYPIGVGINSNGE 219 (286)
T ss_dssp CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----GTEEEEEET-------TCCEEEEESCTTTSCSEEEEEECTTCC
T ss_pred CEEEEeCCCCccCCcEEEEECCCCCEEEEECC-----CCEEEEEcC-------CCCEEEEEccCCccCCCcEEEECCCCC
Confidence 66666542 245789999999987666543 223333332 12333334322 35788999999999
Q ss_pred EEEEeeCCC-cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 160 TIISAGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 160 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
++++...++ .|.+||. +++.+..+... .....+.+++++|+|+++++ +.|++|++|+.....
T Consensus 220 l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQ-DGQLISALESK-VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEECSSSCEEEEECT-TSCEEEEEEES-SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EEEEeCCCCEEEEEECC-CCCEEEEEccc-CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 888887775 9999995 46666666421 12334789999999987666 679999999986543
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=9.3e-15 Score=116.97 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=145.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEe---------cCCCcceEEEEEcC-CCcEEEEEe-CCCcE
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTY---------RGHNGAVWCCDVSR-DSMTLITGS-ADQTA 76 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~---------~~~~~~v~~i~~~~-~~~~l~s~~-~dg~v 76 (305)
+......++++|+|+++++...++.|++|+..... .+..+ .++-.....++++| ++..+++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 44578899999999988888889999999975432 45555 23445789999999 788888876 68999
Q ss_pred EEEecCCCCeeEEEeeC-----------CCceEEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-
Q 021925 77 KLWNVETGAQLFTFNFD-----------SPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK- 143 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~-----------~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 143 (305)
++|| .+++.+..+... ..+..++++|+ +.++++... ...+..++.. .++.+..+.
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----~~~I~~~~~~------~G~~~~~~~~ 236 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----NGRIQCFKTD------TKEFVREIKH 236 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----TTEEEEEETT------TCCEEEEECC
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----CCEEEEEECC------CCcEEEEEec
Confidence 9999 567777766422 23789999998 565555543 2233343332 234444442
Q ss_pred -ccCCCeeEEEEcC------CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925 144 -GPQGRINRAVWGP------LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (305)
Q Consensus 144 -~~~~~i~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 216 (305)
.+...+..++++| +++..++...+..|++||..+++.+..+.....+...+..++++|+|.++++...+++|+
T Consensus 237 ~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 237 ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3456788899999 333333334456899999999998888753335667799999999998888888899999
Q ss_pred EEEcCC
Q 021925 217 LWDART 222 (305)
Q Consensus 217 iwd~~~ 222 (305)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999763
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=9.4e-15 Score=117.79 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=142.3
Q ss_pred cceEEEEEcCCCCEEEEee---------CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---C--cE
Q 021925 11 RPLTYLKYNKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---Q--TA 76 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g--~v 76 (305)
..+...++ ||+.++... .++.|.+||+.+++.. .+ ..+..++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45778888 898887652 2568999999887653 33 568899999999999887754 2 38
Q ss_pred EEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce----------------------eeeeeEEEEEeecccCCC
Q 021925 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM----------------------ELNSAIHVKRIARDPADQ 134 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~ 134 (305)
.+||+.+++.......+. +..+.|+|+++.++....... .....+..+++ .
T Consensus 88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~------~ 160 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT------E 160 (347)
T ss_dssp EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET------T
T ss_pred EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC------C
Confidence 888988887766666555 899999999998877652100 00112222222 1
Q ss_pred CCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC-------cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE
Q 021925 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 207 (305)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 207 (305)
.++.+..+.. . .+..+.|+|++ .++++..++ ...+|.+.+++ ...+. .+ ..+..+ +|+|+.|+
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~---~~-~~~~~~--spdg~~l~ 230 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMF---EK-VSFYAV--DSDGERIL 230 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEE---EE-ESEEEE--EECSSCEE
T ss_pred CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEec---cC-cceeeE--CCCCCEEE
Confidence 2233233444 3 78899999999 777776542 33444443444 33443 23 445444 99999988
Q ss_pred EEeCC--------CeEEEEEcCCceEEEEEe-eCCCeeE-EEecCCCCcEEEeeCCcEE
Q 021925 208 TGSLD--------KSAKLWDARTLELIKTYV-TERPVNA-VTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 208 ~~~~d--------g~i~iwd~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~~~~~ 256 (305)
.++.+ ..|++|| +++...... +...+.. +.|+ ++ ++++++.++..
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 77754 4688888 555443333 4556776 8999 88 77777777653
No 189
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.69 E-value=2.1e-13 Score=107.92 Aligned_cols=239 Identities=9% Similarity=0.044 Sum_probs=156.7
Q ss_pred eEecccccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
..+..+........|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 34555666778999999998 5667777899999987 454 34555566778999999999876666566889999986
Q ss_pred CCCeeEEEe-----eCCCceEEEEecCCceEEEeCCccee----------eeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925 83 TGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFME----------LNSAIHVKRIARDPADQGGESVLILKGPQG 147 (305)
Q Consensus 83 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (305)
++...... ....+..+++.+++.+.++...-... ......++.+.. ..++... +. ...
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~----~~g~~~~-~~-~~~ 188 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP----DGSPLQR-MA-DLD 188 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS----SSCCCEE-EE-EES
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC----CCCcEEE-Ee-cCC
Confidence 54332222 12346789999999877752110000 001122333321 1112222 22 345
Q ss_pred CeeEEEEcCCCCEEEEeeCC------CcEEEEeCCCCcEeeeecc-ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 148 RINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
....++|+|+++.|+.+... +.|.+||+..+. +..... ..........++++++|++ .+++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC
Confidence 66789999999988777665 789999987654 211110 0012334567889999984 444444 4999997
Q ss_pred CCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 221 RTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 221 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+++.+..+.....+.+++|+|+++.|.+++.++.
T Consensus 266 -~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 5777777775557899999999999988887654
No 190
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.68 E-value=2.6e-15 Score=120.98 Aligned_cols=169 Identities=12% Similarity=0.007 Sum_probs=128.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-----------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-----------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
+++.+++++...++++|+.+ .+++|++++.+ ..... .+.. |..++| |++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999988 55669865433 11223 3666 999999 88899988 889999999
Q ss_pred cCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
+++........ .+...+.++.+.+. .
T Consensus 113 v~sl~~~~~~~----------------------------------------------------~~~~~v~~i~~~~p--~ 138 (388)
T 1xip_A 113 LEELSEFRTVT----------------------------------------------------SFEKPVFQLKNVNN--T 138 (388)
T ss_dssp SSSTTCEEEEE----------------------------------------------------ECSSCEEEEEECSS--E
T ss_pred chhhhccCccc----------------------------------------------------eeecceeeEEecCC--C
Confidence 98765332221 12223344444433 2
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE--EEEE------e--
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTY------V-- 230 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------~-- 230 (305)
+++++.||.|.+||+.+++... +...|++++|+|+| ++.|..||++++|+...++. .+++ .
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~ 209 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL 209 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS
T ss_pred EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccc
Confidence 8888999999999999877642 34689999999999 78899999999999887775 5555 1
Q ss_pred --eCCCeeEEEecCCCCcEEE
Q 021925 231 --TERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 231 --~~~~v~~~~~~~~~~~l~~ 249 (305)
+...|.++.|.+++.++++
T Consensus 210 ~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 210 PVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CTTTSEEEEEEESSSSEEEEE
T ss_pred cCCCeeEEEEEEecCCeEEEE
Confidence 4567999999999998886
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=6.7e-13 Score=104.47 Aligned_cols=232 Identities=11% Similarity=0.072 Sum_probs=159.2
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEE-ecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
+.+..+...+.+++++++|+..++...++.|.+||.. ++.... ...+...+.++++.+++..+++...++.|..||..
T Consensus 8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 3455667789999999999988876668899999987 554322 22345679999999999888877778899999976
Q ss_pred CCCeeEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCC
Q 021925 83 TGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 83 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~ 158 (305)
++ ...+. ....+..+++.+++.+.++.... ..+..++. .++... ........+..+++++++
T Consensus 87 -g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~-------~g~~~~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 87 -GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD-------DGKIREYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp -SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT-------TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred -Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEECC-------CCCEEEecCCCCCCCCceEEEcCCC
Confidence 33 33333 23467889999988877765431 11111111 111111 112234568899999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCe
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPV 235 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v 235 (305)
+..++...++.|..||. +++...... ......+..++++++|+++++...++.|.+||. +++... +. ....+
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~ 227 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEFKI--PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARP 227 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCE
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEeeC--CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCc
Confidence 87777777789999998 665543211 123456889999999987777767889999998 665433 32 33568
Q ss_pred eEEEecCCCCcEEEeeCCcE
Q 021925 236 NAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~ 255 (305)
.+++++++|++.++...++.
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp EEEEECSTTCEEEEETTTTE
T ss_pred eeEEECCCCCEEEeccCCce
Confidence 89999999986655544444
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=4.6e-13 Score=114.05 Aligned_cols=230 Identities=11% Similarity=0.059 Sum_probs=156.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcC--CCeeeEEecCCCcceEEEEEc----CCCcEEEEEeC-CCcEEEEecCC
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVS----RDSMTLITGSA-DQTAKLWNVET 83 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~i~~~----~~~~~l~s~~~-dg~v~vwd~~~ 83 (305)
..+..+.++|||+++++++.|+.|.+||+. +++.+.++.... ....++|+ |||+++++++. +++|.++|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356789999999999999999999999995 788888887543 46899999 69998887766 69999999999
Q ss_pred CCeeEEEeeC------------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeE
Q 021925 84 GAQLFTFNFD------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (305)
Q Consensus 84 ~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (305)
.+.+..+... ..+..+..++++..+++.... .+.+.+.+.... ....+..+ ........
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~----~g~v~~vd~~~~----~~~~v~~i-~~~~~~~d 346 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----TGKILLVDYTDL----NNLKTTEI-SAERFLHD 346 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEETTCS----SEEEEEEE-ECCSSEEE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC----CCeEEEEecCCC----ccceeeee-eccccccC
Confidence 9998887632 145566666665544443211 111111111100 00011111 22334667
Q ss_pred EEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeecc-c-cCCccceEEEEEcCCCCE-EEEEe-CCCeEEEEEcCC----
Q 021925 152 AVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDK-E-TGHKKTITSLAKAADGSH-FLTGS-LDKSAKLWDART---- 222 (305)
Q Consensus 152 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~---- 222 (305)
+.|+|+++++++++ .++.|.++|+.+++.+..+.. . ..|.+.-..+ ++|++.. .+++. .++.|.++|..+
T Consensus 347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 347 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred ceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 89999999987766 578999999999988777653 1 1243222222 5787444 44543 468999999987
Q ss_pred ---ceEEEEEeeC-CCeeEEEecCCCCcEEEee
Q 021925 223 ---LELIKTYVTE-RPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 223 ---~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 251 (305)
.+.++++... ..-..+..+|+++++.+..
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 6778887743 3335578999999999876
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=1.2e-13 Score=110.32 Aligned_cols=221 Identities=9% Similarity=-0.026 Sum_probs=153.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCC-----cceEEEEEcCCCcEEEEEe-CCCcEEEEecCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-----GAVWCCDVSRDSMTLITGS-ADQTAKLWNVET 83 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~-~dg~v~vwd~~~ 83 (305)
......++++++++..++...++.|.+||..+++....+.... .....+++ .+++.+++.. .++.|.++|.++
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC
Confidence 4568899999998555554478999999999999887776433 14567777 4444444443 488999999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcceee-----eeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCC
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-----NSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPL 157 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 157 (305)
++.+..+........+.+++++++.+++....... ...+...+. ...+....+... ......++++|+
T Consensus 162 ~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~------~t~~v~~~~~~~~g~~p~~la~~~d 235 (328)
T 3dsm_A 162 DKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA------ETFTVEKQFKFKLGDWPSEVQLNGT 235 (328)
T ss_dssp TEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET------TTTEEEEEEECCTTCCCEEEEECTT
T ss_pred CeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC------CCCeEEEEEecCCCCCceeEEEecC
Confidence 99988888777788999999999777665421100 022333322 122333333322 236889999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcC-CCCEEEEE----eCCCeEEEEEcCCceEEEEEeeC
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG----SLDKSAKLWDARTLELIKTYVTE 232 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~ 232 (305)
++.++++.. .|.+||..+++...... ..........++++| ++.++++. ..++.|.+||.. ++.+.++..+
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG 311 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec
Confidence 998888765 89999998877542111 111246788999999 55555565 578999999998 9999988866
Q ss_pred CCeeEEEec
Q 021925 233 RPVNAVTMS 241 (305)
Q Consensus 233 ~~v~~~~~~ 241 (305)
.....++|-
T Consensus 312 ~~P~~~~~~ 320 (328)
T 3dsm_A 312 IIPGAFCWK 320 (328)
T ss_dssp ESEEEEEEE
T ss_pred cCcceEEEe
Confidence 666777664
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=3.8e-14 Score=125.62 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=151.2
Q ss_pred ccccceEEEEEcCCCCEEEEeeCC-----CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc-------
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT------- 75 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~------- 75 (305)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344478899999999999887653 359999999998754321 2222357899999 98888877654
Q ss_pred -------EEEEecCCCCe--eEEEeeC---CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 76 -------AKLWNVETGAQ--LFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 76 -------v~vwd~~~~~~--~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
|.+|++.+++. ...+... ..+..+.|+|+++.++............+.++++.... .+....+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~ 313 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK----IGPVTALI 313 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE----ECCCEEEE
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC----CcccEEec
Confidence 88999987763 2333322 24778999999998877654221123344455543210 01134445
Q ss_pred ccCCCeeEEEEcCCCCEEEEeeC----CCcEEEEeCCCCc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 021925 144 GPQGRINRAVWGPLNRTIISAGE----DAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 218 (305)
.+....... ++|+++.|+..+. ++.|.+||+.++. ....+.. .+...+..++++ ++.++++...|+..++|
T Consensus 314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 555555544 3488988887765 3459999998742 3233321 344457777887 56678888889987777
Q ss_pred EcC-CceEEEEEe--eCCCeeEEEecCCCCcEEEe
Q 021925 219 DAR-TLELIKTYV--TERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 219 d~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~ 250 (305)
.+. +++....+. ....+..++++|+++.++..
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 654 455556555 34568889999999876644
No 195
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.65 E-value=1.5e-12 Score=103.94 Aligned_cols=230 Identities=13% Similarity=0.034 Sum_probs=151.1
Q ss_pred ceEEEEEcCCC-CEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 12 ~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
-..+..|+|++ ..+++...++.|..||..+++.. .+. ....+.+++|+|+|+++++. .+ .|.+||.++++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 45688999974 45666667889999998877643 333 35679999999999877654 44 4999999888754333
Q ss_pred eeC-----CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-
Q 021925 91 NFD-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA- 164 (305)
Q Consensus 91 ~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 164 (305)
... ..+..+.++|++++.+...... .......++.+. . ++ ...+.........++|+|+++.++.+
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~-~-----g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA-K-----GK-VTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE-T-----TE-EEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe-C-----Cc-EEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 221 2467889999998766543110 000112333332 1 11 22222333456789999999877555
Q ss_pred eCCCcEEEEeCC--CC-cEe--eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEE
Q 021925 165 GEDAIVRIWDTE--TG-KLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (305)
Q Consensus 165 ~~dg~i~iwd~~--~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~ 238 (305)
+.++.|.+||+. ++ +.. ..+.........+..++++++|++.++...++.|..||. +++.+..+. ....+.++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 457899999986 55 311 112111123455678999999987777767789999998 577777776 34468999
Q ss_pred Eec-CCCCcEEEeeCCc
Q 021925 239 TMS-PLLDHVCIGEPQT 254 (305)
Q Consensus 239 ~~~-~~~~~l~~~~~~~ 254 (305)
+|+ |+++.|++++..+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 8988777665443
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.64 E-value=1.2e-12 Score=107.58 Aligned_cols=229 Identities=9% Similarity=-0.008 Sum_probs=149.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~ 88 (305)
.....++|+++|+++++...++.|++||..+++.......... .. ++|+|+++.|+++..++ .|.+++..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999999777777789999999988776655554333 34 99999999998888766 78899887666544
Q ss_pred EE----e-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-----eccCCCe-e-EEEEcC
Q 021925 89 TF----N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-----KGPQGRI-N-RAVWGP 156 (305)
Q Consensus 89 ~~----~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i-~-~~~~~~ 156 (305)
.+ . ....+.+++++|++..++++.. ...+..++... .. ...+ .++...- . .++++|
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-----~~~I~~~d~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDS-----NKNFGRFNVKT------QE-VTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECT-----TCEEEEEETTT------CC-EEEEEECCCCSCCCCSSCCEEEEET
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEEC-----CCcEEEEECCC------CC-EEEEecccccCCCCCCccccEEEeC
Confidence 44 2 4456788999995444444432 12222222211 11 1111 1122222 3 899999
Q ss_pred C-CCEEEEeeCCCcEEEEeCCCCcEeeeecccc------------CCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 021925 157 L-NRTIISAGEDAIVRIWDTETGKLLKESDKET------------GHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART 222 (305)
Q Consensus 157 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 222 (305)
+ +.++++-..++.|+.||.... +..+.... ..-.....++++|+|+++++-+ .+++|+.||+.+
T Consensus 277 ~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 277 VDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 6 555555566889999997643 22221100 0123578999999999777877 889999999887
Q ss_pred ceEEEEEee---------------CCCeeEEEecCCCCcEEEeeCCcE
Q 021925 223 LELIKTYVT---------------ERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 223 ~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
++....... -.....++++|++.++++-..++.
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 765433322 134789999999765555544443
No 197
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=1.7e-12 Score=110.60 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=159.4
Q ss_pred CCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC--CCCeeEEEeeCCCce
Q 021925 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE--TGAQLFTFNFDSPAR 97 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~v~ 97 (305)
|.+..+++...++.|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+.......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 4445667777889999999999999988874 3456799999999999999999999999995 888888888777788
Q ss_pred EEEEe----cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec----------c-CCCeeEEEEcCCCCEEE
Q 021925 98 SVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNRTII 162 (305)
Q Consensus 98 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~l~ 162 (305)
.++++ |++++++++.. ....+.+.+. ...+.+..+.. | ...+..+..++++..++
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~----~~~~v~ViD~------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAY----WPPQYVIMDG------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEE----ETTEEEEEET------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred eeEEccccCCCCCEEEEEEc----cCCeEEEEEC------CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 99999 69998888753 1233333332 22334333321 1 22567788888876544
Q ss_pred -EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEee-CCCe---e
Q 021925 163 -SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT-ERPV---N 236 (305)
Q Consensus 163 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~v---~ 236 (305)
....+|.|.++|....+.+..... ........+.|+|+|+++++++ .++.|.++|+.+++.+..+.. .... .
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~ 391 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 391 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred EEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence 555679999999987543332211 2344567889999999887665 578999999999998877764 2211 2
Q ss_pred EEE-ecCCCCcE-EEee-CCcEEEEEEee
Q 021925 237 AVT-MSPLLDHV-CIGE-PQTIKFMLLVY 262 (305)
Q Consensus 237 ~~~-~~~~~~~l-~~~~-~~~~~~~~~~~ 262 (305)
... ++|++..+ +++. +++.+.++...
T Consensus 392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 392 GANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 333 57875444 4442 44555444443
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=7.7e-12 Score=98.37 Aligned_cols=226 Identities=10% Similarity=-0.024 Sum_probs=152.3
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee-EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
+...+.+++++++|++.++...++.|..|+.. ++.. ..+......+.++++.++++.+++...++.|.+||. +++..
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 45678999999999988887778899999876 3322 122234557899999999988887777889999998 55443
Q ss_pred EEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE-EeccCCCeeEEEEcCCCCEEEEe
Q 021925 88 FTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTIISA 164 (305)
Q Consensus 88 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 164 (305)
.... ....+..+++.+++.+.++.... ..+...+. .++.... .......+..++++++++..++.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-------~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 200 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQN-----NAIGRITE-------SGDITEFKIPTPASGPVGITKGNDDALWFVE 200 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT-------TCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCC-----CEEEEEcC-------CCcEEEeeCCCCCCcceeEEECCCCCEEEEc
Confidence 2221 23567889999988777665421 11111111 1111111 22334567899999999877776
Q ss_pred eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEEec
Q 021925 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMS 241 (305)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~ 241 (305)
..++.|.+||. +++... +.. ..+...+.+++++++|+++++...++.|..||. +++. ..+. ....+.++++
T Consensus 201 ~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~- 274 (299)
T 2z2n_A 201 IIGNKIGRITT-SGEITE-FKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF- 274 (299)
T ss_dssp TTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-
T ss_pred cCCceEEEECC-CCcEEE-EEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-
Confidence 66889999999 665433 321 134567899999999987666667899999998 4543 3332 3456889999
Q ss_pred CCCCcEEEeeCCc
Q 021925 242 PLLDHVCIGEPQT 254 (305)
Q Consensus 242 ~~~~~l~~~~~~~ 254 (305)
+++++.++...++
T Consensus 275 ~~g~l~v~~~~~~ 287 (299)
T 2z2n_A 275 DGETIWFAMECDK 287 (299)
T ss_dssp CSSCEEEEETTTE
T ss_pred cCCCEEEEecCCc
Confidence 8887666655443
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.9e-13 Score=120.67 Aligned_cols=229 Identities=13% Similarity=0.004 Sum_probs=145.0
Q ss_pred CCCCEEEEeeCC-Cc--eEEEEc--CCCeeeEEe------cCCCcceEEEEEcCCCcEEEEEeCCC-----cEEEEecCC
Q 021925 20 KDGDLLFSCAKD-HT--PTVWFA--DNGERLGTY------RGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVET 83 (305)
Q Consensus 20 ~~~~~l~s~~~d-g~--v~iw~~--~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~dg-----~v~vwd~~~ 83 (305)
|+|++++....+ +. -.+|-. ..++....+ .+|...+..++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889887765433 22 245544 334432222 13445689999999999998765533 899999999
Q ss_pred CCeeEEEeeCCCceEEEEecCCceEEEeCCcce-----------eeeeeEEEEEeecccCCCCCceEEEEec--cCCCee
Q 021925 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM-----------ELNSAIHVKRIARDPADQGGESVLILKG--PQGRIN 150 (305)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~ 150 (305)
++..........+..++|+|+++.++.+..... .....+..+++... ..+....... +...+.
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~----~~~~~~v~~~~~~~~~~~ 236 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD----QSEDILCAEFPDEPKWMG 236 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC----GGGCEEEECCTTCTTCEE
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC----cccceEEeccCCCCeEEE
Confidence 987764444444778999999998887764322 11122444443211 1111222232 455578
Q ss_pred EEEEcCCCCEEEEeeC-----CCcEEEEeCCC------Cc-EeeeeccccCCccceEEEEEcCCCCEEEEEeCC----Ce
Q 021925 151 RAVWGPLNRTIISAGE-----DAIVRIWDTET------GK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLD----KS 214 (305)
Q Consensus 151 ~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~ 214 (305)
.+.|+|+|++|+.++. +..|++||+.+ +. ....+. .+...+.. .|+|+|+.|+..+.+ +.
T Consensus 237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred EEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence 8999999999987764 57899999976 42 344443 34444444 478888887766653 36
Q ss_pred EEEEEcCCceE--EEEE-eeCC--CeeEEEecCCCCcEEEeeCCcEE
Q 021925 215 AKLWDARTLEL--IKTY-VTER--PVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 215 i~iwd~~~~~~--~~~~-~~~~--~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
|.+||+.+++. ...+ .+.. .+..++|++++.+++++..++..
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 99999987642 2333 3322 57889999877777777766653
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=2.1e-12 Score=104.71 Aligned_cols=226 Identities=8% Similarity=-0.056 Sum_probs=143.0
Q ss_pred EEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCC-------CcceEEEEEcCCCcEEEEEeC--CCc
Q 021925 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT 75 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--dg~ 75 (305)
.++++|||+.++.+. .++.|.+||..+.+.+.++... ......+.|+|||++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999875 3678999999998887776432 123468999999999998874 578
Q ss_pred EEEEecCCCCeeEE-EeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE------EeccCCC
Q 021925 76 AKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI------LKGPQGR 148 (305)
Q Consensus 76 v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 148 (305)
|.++| .+++.+.. +..+.. +.+.|.+...+....+ ++.....+. . ++.... ..+....
T Consensus 150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~----dg~~~~vd~-~------g~~~~~~~~~~~~~~~~p~ 214 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCA----QGGLAKTDH-A------GGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcC----CCCEEEEEC-C------CcEEEEEeccccccCCcce
Confidence 99999 99988877 654432 3344443222211100 111111111 0 000000 0111111
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--Eeeeecccc-------CCccceEEEEEcCCCCEEEEEeC--------
Q 021925 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKET-------GHKKTITSLAKAADGSHFLTGSL-------- 211 (305)
Q Consensus 149 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-------- 211 (305)
.....+.+++..++..+..+.+.+.|+.... .+..+.... ........+.++|+++.++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 1224556666555555577899999997543 222221100 01223445789999988877653
Q ss_pred --CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEee-CCcE
Q 021925 212 --DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGE-PQTI 255 (305)
Q Consensus 212 --dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~~~~ 255 (305)
.+.|.++|+.+++.+.++.......+++|+|||+ .++++. .++.
T Consensus 295 ~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 295 AAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred CCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCe
Confidence 3579999999999999998777799999999999 677766 3554
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=2.1e-13 Score=120.09 Aligned_cols=230 Identities=7% Similarity=-0.040 Sum_probs=141.0
Q ss_pred cCCCCEEEEeeCCC---ceEEEE--cCCCeeeEEec------CCCcceEEEEEcCCCcEEE-----EEeCCCcEEEEecC
Q 021925 19 NKDGDLLFSCAKDH---TPTVWF--ADNGERLGTYR------GHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVE 82 (305)
Q Consensus 19 ~~~~~~l~s~~~dg---~v~iw~--~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~-----s~~~dg~v~vwd~~ 82 (305)
+|+|++++....++ .-.+|- ...++....+. +|...+.+++|||||++|+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888766544 345554 33444333322 4556799999999999998 34445789999999
Q ss_pred CCCee-EEEeeCCCceEEEEecCCceEEEeCCcce--------eeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEE
Q 021925 83 TGAQL-FTFNFDSPARSVDFAVGDKLAVITTDPFM--------ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 83 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (305)
+++.+ ...........++|+|+++.++.+..... .....+..+++.... .....+.....+...+..+.
T Consensus 156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~--~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP--SKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG--GGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc--hhceEEEecCCCCEEEEEEE
Confidence 98865 21111122378999999998887754221 112224444442211 00112222334556788999
Q ss_pred EcCCCCEEEEeeCCC----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCceE-
Q 021925 154 WGPLNRTIISAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL- 225 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~- 225 (305)
|+|+|++|+.++.++ .|+++|..+++.. .+. .+...+....+ ++|.+++.+. .++.|.+||+.+++.
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 999999998877665 7888876655433 333 23444555556 5666444443 258899999987653
Q ss_pred --EEEEee--CCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 226 --IKTYVT--ERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 226 --~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
...+.+ ...+..++|+ ++.++++...++..
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS 342 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 333332 4457888888 56667776666653
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.59 E-value=3.3e-11 Score=94.78 Aligned_cols=231 Identities=12% Similarity=0.045 Sum_probs=156.0
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~ 84 (305)
+......+.+++++++|+..++...++.|.+||.. ++... .+......+.++++.++++.+++...++.|..+|.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34455678999999999988877778999999977 55433 223334678999999999877777667889999987 5
Q ss_pred CeeEEEee---CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCE
Q 021925 85 AQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 85 ~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ 160 (305)
+. ..+.. ...+..+++.+++.+.++..... .+...+. . ++... .+......+..++++++++.
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~~~------~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGD-----RIGKLTA------D-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTTCEEEEETTTT-----EEEEECT------T-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred Ce-EEecCCCCCCCCccceECCCCCEEEEccCCC-----eEEEECC------C-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 54 33332 35678899999888777654311 1111111 1 11111 12223456889999999996
Q ss_pred EEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEE-Ee-eCCCeeEE
Q 021925 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAV 238 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~ 238 (305)
.++...++.|..+|. +++... +.. ......+..++++++|++.++....+.|.++|. +++.... .. ....+.++
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 235 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAI 235 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEecCCCeEEEECC-CCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEE
Confidence 666666789999998 555443 221 133457889999999987777767788999998 4544332 22 34568899
Q ss_pred EecCCCCcEEEeeCCcE
Q 021925 239 TMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 239 ~~~~~~~~l~~~~~~~~ 255 (305)
+++++|++.++...++.
T Consensus 236 ~~d~~g~l~v~~~~~~~ 252 (300)
T 2qc5_A 236 TAGKNSEIWFTEWGANQ 252 (300)
T ss_dssp EECSTTCEEEEETTTTE
T ss_pred EECCCCCEEEeccCCCe
Confidence 99999986555544444
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=6.2e-13 Score=106.78 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=153.5
Q ss_pred EEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCCC-------cceEEEEEcCCCcEEEEEeC--CCc
Q 021925 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT 75 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~--dg~ 75 (305)
.++++|||++++++. .++.|.+||..+++.+.++.-.. .....++|+|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 499999999887765 35789999999999888875221 23567899999999888764 689
Q ss_pred EEEEecCCCCeeEEEeeCCC--------ceEEEEecCCceEEEeCCcceeeeeeE-EEEEeecccC-------CCCC---
Q 021925 76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAI-HVKRIARDPA-------DQGG--- 136 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~--- 136 (305)
|.++|+.+++.+.++..+.. -.-+..+++|+++++............ ...+...... ...+
T Consensus 162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 99999999999988874331 112467778888777765311110000 0000000000 0001
Q ss_pred -----ceEEEEecc-----------------------CCCeeEEEEcCCCCEEEEeeC----------CCcEEEEeCCCC
Q 021925 137 -----ESVLILKGP-----------------------QGRINRAVWGPLNRTIISAGE----------DAIVRIWDTETG 178 (305)
Q Consensus 137 -----~~~~~~~~~-----------------------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~ 178 (305)
..+..+... ......++++|+++.++.... ...|.+.|+.++
T Consensus 242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~ 321 (386)
T 3sjl_D 242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 321 (386)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence 111112111 112234677888887777642 257999999999
Q ss_pred cEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCC
Q 021925 179 KLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 243 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 243 (305)
+.++.+. -...+..+++++|++ .|++.. .++.|.++|..+++.++++......+.+.+++|
T Consensus 322 kv~~~i~----vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 322 ERLAKFE----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp CEEEEEE----EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred eEEEEEE----CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 9999886 345788999999997 666654 589999999999999999997777788888877
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=4.9e-13 Score=103.75 Aligned_cols=200 Identities=7% Similarity=-0.073 Sum_probs=136.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
...+.+++++++|+++++.. ++.|.+||...... ..+. .....+.++++.++|+.+++...++.|.+|+..+.....
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 35688999999998666655 88999999765543 3333 233578999999999877777778899999866554432
Q ss_pred EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
... ....+..+++.+++.+.++.... ..+..++.. ..........+...+..++++++|..+++...+
T Consensus 144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~------~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~ 212 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNSGNVYVTDTDN-----NRVVKLEAE------SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT 212 (270)
T ss_dssp CCCCSCCSCCCEEECTTCCEEEEEGGG-----TEEEEECTT------TCCEEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred eccccCCCceeEEEeCCCCEEEEECCC-----CEEEEEecC------CCceEeecccCCCCceEEEECCCCCEEEEECCC
Confidence 222 22467889999988866554421 122222211 111111112233668899999999777777778
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 225 (305)
+.|.+||........ .. ..+...+.+++++++|+++++...+++|+++++...+.
T Consensus 213 ~~v~~~~~~~~~~~~-~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 213 NQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCEEEECTTCSCCEE-CC--CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CcEEEEcCCCCccee-ec--cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 899999987654332 21 12335789999999999888888999999999876554
No 205
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=1.3e-12 Score=102.80 Aligned_cols=202 Identities=12% Similarity=0.013 Sum_probs=135.0
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC----CcceEEEEEcCCCcEEEEE----e------
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITG----S------ 71 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~----~------ 71 (305)
+..+...+.+++++|+|+++++...++.|.+||..+++........ ...+.+++++|+|+++++. +
T Consensus 64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG 143 (296)
T ss_dssp EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence 4456677999999999998887777789999998787754433221 1346789999999988873 2
Q ss_pred -------CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce---EEE
Q 021925 72 -------ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES---VLI 141 (305)
Q Consensus 72 -------~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 141 (305)
..+.|..++.. ++.............++++|+++.+++... ...+..+++.. .+.. ...
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~-----~g~~~~~~~~ 212 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTG-----DNATHRYCLNA-----RGETEYQGVH 212 (296)
T ss_dssp SCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETT-----TTEEEEEEECS-----SSCEEEEEEE
T ss_pred ccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCC-----CCeEEEEEECC-----CCcCcCCCeE
Confidence 12345555554 444333335556788999999998844443 22334444321 1111 122
Q ss_pred EeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEE-cCCCCEEEEEeCCCeEEEEEc
Q 021925 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-AADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~ 220 (305)
+..+...+..++++++|++.++. ++.|.+||.. ++.+..+. .+.. +++++| .|+++.|++++.+ .+.-++.
T Consensus 213 ~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~---~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~ 284 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL---TPQT-TSNLCFGGPEGRTLYMTVST-EFWSIET 284 (296)
T ss_dssp ECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE---CSSC-CCEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred eeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE---CCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence 23355667789999999866655 7899999986 77777665 3444 888999 6899888888876 4656666
Q ss_pred CCceEE
Q 021925 221 RTLELI 226 (305)
Q Consensus 221 ~~~~~~ 226 (305)
++.+..
T Consensus 285 ~~~~~~ 290 (296)
T 3e5z_A 285 NVRGLE 290 (296)
T ss_dssp SCCBCC
T ss_pred cccccc
Confidence 655443
No 206
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=7.9e-13 Score=102.78 Aligned_cols=177 Identities=11% Similarity=0.098 Sum_probs=135.0
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE
Q 021925 63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140 (305)
Q Consensus 63 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (305)
.++.|++++.|+.|.+||.++++.+.++.... .+.++.+.|++++++.. +.. +..++ ..++.+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~-~~~------V~~~d-------~~G~~~W 69 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY-SKG------AKMIT-------RDGRELW 69 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEEC-BSE------EEEEC-------TTSCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeC-CCC------EEEEC-------CCCCEEE
Confidence 45789999999999999999999999998654 68999999999988843 211 11111 1244555
Q ss_pred EEecc-CCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCCcEeeeecccc---CCccceEEEEEcCCCCEEEEEeCCCeE
Q 021925 141 ILKGP-QGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKET---GHKKTITSLAKAADGSHFLTGSLDKSA 215 (305)
Q Consensus 141 ~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i 215 (305)
.+..+ ...+.++.+.|+|+.+++.+. ++.|..+|. +++.+..+.... .+......++..++|+++++...++.|
T Consensus 70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v 148 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEV 148 (276)
T ss_dssp EEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEE
T ss_pred EEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEE
Confidence 55544 246788999999999999887 788888886 677776654211 122345566788999999999999999
Q ss_pred EEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 216 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
..||.+ |+.+.++.....+.++...++|+.++++..++.
T Consensus 149 ~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 187 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHC 187 (276)
T ss_dssp EEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSE
T ss_pred EEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCe
Confidence 999988 999999986667788899999999888877654
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=3.9e-13 Score=108.37 Aligned_cols=145 Identities=8% Similarity=-0.005 Sum_probs=113.9
Q ss_pred CceEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
+|.....+.+ |+.++| |+++|+++ .++.|++||+.+.........|..++.++.+.+. .+++++.||.|.+||+
T Consensus 80 ~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 80 TFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDL 153 (388)
T ss_dssp CCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEET
T ss_pred cceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEc
Confidence 3434445777 999999 89999998 8899999999887766667778888999888764 3888999999999999
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
.+++... +...|++++|||+| +
T Consensus 154 ~~~~~~~--------------------------------------------------------~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 154 RTKSTKQ--------------------------------------------------------LAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp TTCCEEE--------------------------------------------------------EEESEEEEEECSSE--E
T ss_pred cCCcccc--------------------------------------------------------ccCCceEEEEcCCc--e
Confidence 8765421 12358899999999 7
Q ss_pred EEeeCCCcEEEEeCCCCcE--eeeeccc------cCCccceEEEEEcCCCCEEEEEe
Q 021925 162 ISAGEDAIVRIWDTETGKL--LKESDKE------TGHKKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 162 ~~~~~dg~i~iwd~~~~~~--~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~ 210 (305)
+.|..||.+++|+...++. .+.+... .+|...|.++.|.+++.++++-+
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 7899999999999887764 4455211 13678899999999999888733
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=1.3e-10 Score=91.36 Aligned_cols=224 Identities=8% Similarity=-0.028 Sum_probs=150.6
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
.+...+.+++++++|++.++...++.|..+|.. ++... .+......+.++++.++++.+++...++.|..+|.. ++.
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 344678999999999888877667889999977 55432 222234678999999999888777768899999987 554
Q ss_pred eEEEe---eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEE-EEeccCCCeeEEEEcCCCCEEE
Q 021925 87 LFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 87 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
. .+. ....+..+++.+++++.++..... .+...+. .++... ....+...+..++++++++..+
T Consensus 137 ~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-----~i~~~~~-------~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 203 (300)
T 2qc5_A 137 Y-EYDLPNKGSYPAFITLGSDNALWFTENQNN-----SIGRITN-------TGKLEEYPLPTNAAAPVGITSGNDGALWF 203 (300)
T ss_dssp E-EEECSSTTCCEEEEEECTTSSEEEEETTTT-----EEEEECT-------TCCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred E-EccCCCCCCCceeEEECCCCCEEEEecCCC-----eEEEECC-------CCcEEEeeCCCCCCCcceEEECCCCCEEE
Confidence 4 332 235678899999888666554211 1111111 111111 1123345688999999998777
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe---eCCCeeEEE
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVT 239 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~ 239 (305)
+....+.|.+||. +++...... ......+.+++++++|++.++...++.|..+|. +++.. .+. ....+.+++
T Consensus 204 ~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 204 VEIMGNKIGRITT-TGEISEYDI--PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGIT 278 (300)
T ss_dssp EETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEE
T ss_pred EccCCCEEEEEcC-CCcEEEEEC--CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeE
Confidence 6666788999998 454433211 134567889999999987776666799999998 44433 332 345688999
Q ss_pred ecCCCCcEEEee
Q 021925 240 MSPLLDHVCIGE 251 (305)
Q Consensus 240 ~~~~~~~l~~~~ 251 (305)
++++|++.++..
T Consensus 279 ~~~~g~l~v~~~ 290 (300)
T 2qc5_A 279 FGKDGSVWFALK 290 (300)
T ss_dssp ECTTSCEEEECS
T ss_pred eCCCCCEEEEcc
Confidence 999998655544
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=8.7e-12 Score=100.28 Aligned_cols=240 Identities=8% Similarity=-0.003 Sum_probs=144.4
Q ss_pred cceEEEEEcCCCCEEEEee--CCCceEEEEcCCCeeeEEe-------cCCCcceEEEEEcCCCcEEEEEeC-----CCcE
Q 021925 11 RPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRDSMTLITGSA-----DQTA 76 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~l~s~~~-----dg~v 76 (305)
..+..++++|+|+.+++.. .++.++||.+.+++.. .+ ..+-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343666666555532 22 124567999999999876665433 5789
Q ss_pred EEEecCCCCeeEEEeeC-------CCceEEEEecCCceEEEeCCcceeeeeeEEEEEe--------eccc-CCCCCceEE
Q 021925 77 KLWNVETGAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI--------ARDP-ADQGGESVL 140 (305)
Q Consensus 77 ~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~ 140 (305)
.+||+.+++.+..+..+ ..+..+++.+++..++++.... .....+.+++. .... .........
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~-~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP-DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS-GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc-CCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 99999999877777643 2458899998654444432200 00112222221 1100 000000000
Q ss_pred EEec--------------cCCCeeEEEEcCCCCEEEEeeCCC-cEEEEeCC---CCcE-----eeeeccccCCccceEEE
Q 021925 141 ILKG--------------PQGRINRAVWGPLNRTIISAGEDA-IVRIWDTE---TGKL-----LKESDKETGHKKTITSL 197 (305)
Q Consensus 141 ~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~---~~~~-----~~~~~~~~~~~~~v~~~ 197 (305)
...+ -...+..++++|+++.|+.+..++ .+..++.. .+.. ...+. ..++......+
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgi 253 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGI 253 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceE
Confidence 0000 112467899999999888887765 55555432 1110 00000 00223355678
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee--CCCeeEEEecCCCCcEEEeeCC
Q 021925 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~ 253 (305)
+++++|+++++...++.|.+||.++++....... ...+.++++.++++++++++..
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 9999999999988999999999856664333332 3457899999998877766543
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.53 E-value=1.1e-12 Score=115.38 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=145.0
Q ss_pred ccccceEEEEEcCCCCEEEEe-----eCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCc-------
Q 021925 8 GHERPLTYLKYNKDGDLLFSC-----AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT------- 75 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~------- 75 (305)
+|...+..++|||||++||.+ +.+..|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 456678999999999998853 333579999999998654311 11113577899 9999988887743
Q ss_pred ------EEEEecCCCCe--eEEEeeC----CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 76 ------AKLWNVETGAQ--LFTFNFD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 76 ------v~vwd~~~~~~--~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
|++|++.+++. ...+... .....+.++|+++.++........ ...+.+.++.. .......+.
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~i~~~d~~~-----~~~~~~~l~ 277 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS-GNRLYVKDLSQ-----ENAPLLTVQ 277 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS-CCEEEEEETTS-----TTCCCEEEE
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC-CcEEEEEECCC-----CCCceEEEe
Confidence 99999987653 2333322 235788999999988765432111 12333333221 112344455
Q ss_pred ccCCCeeEEEEcCCCCEEEEee-CC---CcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCCCCEEEEEeC-CC--e
Q 021925 144 GPQGRINRAVWGPLNRTIISAG-ED---AIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--S 214 (305)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~ 214 (305)
.+....... ++++++.|+..+ .+ +.|..+|+.++.. .+.+. .+...+. .|+++++.|+.... ++ .
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 566555555 666666555443 33 6899999987653 22333 3444444 88898888876665 44 6
Q ss_pred EEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEee
Q 021925 215 AKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~ 251 (305)
|++||+..+ ....+. ....+..+.++|+++.++...
T Consensus 352 l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ 389 (693)
T 3iuj_A 352 VEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGF 389 (693)
T ss_dssp EEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred EEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEe
Confidence 899998754 344444 334577788888988777654
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=1.5e-11 Score=97.56 Aligned_cols=204 Identities=9% Similarity=0.043 Sum_probs=132.4
Q ss_pred cccceEEEEEcCC-CCEEEEeeCCCceEEEEcCCCeeeEE-ecC----CCcceEEEEEcCCCcEEEEEeCC---------
Q 021925 9 HERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGT-YRG----HNGAVWCCDVSRDSMTLITGSAD--------- 73 (305)
Q Consensus 9 h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~l~s~~~d--------- 73 (305)
+...+.+++++++ |+++++.. .+.|.+||.+ ++.... ... ....+.+++++++|+.+++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 5577899999999 76555544 4478999987 665433 221 12358899999999877776654
Q ss_pred ------CcEEEEecCCCCeeEEEeeCCCceEEEEe----cCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 74 ------QTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 74 ------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
+.|..+|.. ++.............++++ ++++.++++... ...+..++...............+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP----TKKLWSYDIKGPAKIENKKVWGHIP 221 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT----TTEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC----CCeEEEEECCCCCccccceEEEECC
Confidence 567777765 5544444444566889999 998765554321 1223333322100000001112222
Q ss_pred ccC-CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 021925 144 GPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDAR 221 (305)
Q Consensus 144 ~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 221 (305)
.+. ..+..++++++|+++++...++.|.+||..+++.+..+. .+...+.+++++|+++.|+ +...++.|..|++.
T Consensus 222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 333 557889999999988887788999999998777666554 3457789999999999554 44556889999976
Q ss_pred C
Q 021925 222 T 222 (305)
Q Consensus 222 ~ 222 (305)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 4
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.52 E-value=1.5e-11 Score=98.91 Aligned_cols=205 Identities=11% Similarity=0.018 Sum_probs=142.5
Q ss_pred ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------CCCcEEEEecCCCCeeEEEeeC--------C
Q 021925 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------S 94 (305)
Q Consensus 33 ~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~--------~ 94 (305)
.|.+.|..+++.+.++..-..+ .+.++||+++++++. .++.|.+||..+++.+.++..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999999765556 799999999988886 3688999999999999999865 4
Q ss_pred CceEEEEecCCceEEEeCC---cceee--eeeEEEEEeeccc----------------C--------CCC-----C----
Q 021925 95 PARSVDFAVGDKLAVITTD---PFMEL--NSAIHVKRIARDP----------------A--------DQG-----G---- 136 (305)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~----------------~--------~~~-----~---- 136 (305)
....+.++|+++.++++.. ..... ........+.... . ... +
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 5789999999998888742 22222 1110011110000 0 000 0
Q ss_pred --------------------------ceEEEEeccC-----------------------CCeeEEEEcCCCCEEEEeeC-
Q 021925 137 --------------------------ESVLILKGPQ-----------------------GRINRAVWGPLNRTIISAGE- 166 (305)
Q Consensus 137 --------------------------~~~~~~~~~~-----------------------~~i~~~~~~~~~~~l~~~~~- 166 (305)
..+..+.... .....+.++|+++.++.+..
T Consensus 205 ~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 205 QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred EeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 0000011000 00112679999988876543
Q ss_pred --------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCE-EEEEe-CCCeEEEEEcCCceEEEEEeeCCCee
Q 021925 167 --------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGS-LDKSAKLWDARTLELIKTYVTERPVN 236 (305)
Q Consensus 167 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~v~ 236 (305)
++.+.++|+.+.+.+..+. -......++|+|||+. +++.. .++.|.++|+.+++.+.++.......
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~----vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCCeEEEEEE----CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2356799999999998886 2346889999999985 55555 59999999999999999998777778
Q ss_pred EEEecCC
Q 021925 237 AVTMSPL 243 (305)
Q Consensus 237 ~~~~~~~ 243 (305)
.+++.+.
T Consensus 361 ~i~~~~~ 367 (368)
T 1mda_H 361 SLSVQNE 367 (368)
T ss_dssp EEECCCC
T ss_pred EEEeecC
Confidence 8887653
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=5e-12 Score=103.31 Aligned_cols=239 Identities=9% Similarity=-0.002 Sum_probs=151.7
Q ss_pred CCCCEEEEeeCC-----CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------CCCcEEEEecCCC
Q 021925 20 KDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETG 84 (305)
Q Consensus 20 ~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~v~vwd~~~~ 84 (305)
++++.++++... +.|.++|..+++.+.++..-..+ .+.++||+++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 477766665542 69999999999999998865555 899999999888776 3678999999999
Q ss_pred CeeEEEeeC--------CCceEEEEecCCceEEEeCC---cceeeeee---EEEEEeeccc--------------CCCCC
Q 021925 85 AQLFTFNFD--------SPARSVDFAVGDKLAVITTD---PFMELNSA---IHVKRIARDP--------------ADQGG 136 (305)
Q Consensus 85 ~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~--------------~~~~~ 136 (305)
+.+..+..+ .....+.++|+++.++++.. ..+..... -.+..+.... ....+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 999988754 45678999999999888642 11111110 0000110000 00000
Q ss_pred ceEEEEeccCCCe----------------eEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeecccc----C---Cc
Q 021925 137 ESVLILKGPQGRI----------------NRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET----G---HK 191 (305)
Q Consensus 137 ~~~~~~~~~~~~i----------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~----~---~~ 191 (305)
+... +....+.+ ..+.+.++++.++..+..+.+.+.|+...... ..+.... . ..
T Consensus 240 ~~~~-V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 240 SLAR-VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp SEEE-EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CEEE-EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 0000 00011111 12345677766666667788888888654321 1111000 0 01
Q ss_pred cceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEee-CCcEEEEE
Q 021925 192 KTITSLAKAADGSHFLTGSL----------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGE-PQTIKFML 259 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~~~~~~~~ 259 (305)
.....++++|+++.+++... ++.|.+.|+.+++.+.++..+.....++|+|+|+ .++++. .++...++
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 11223688999887776642 3579999999999999998777789999999999 888877 46664444
Q ss_pred Ee
Q 021925 260 LV 261 (305)
Q Consensus 260 ~~ 261 (305)
..
T Consensus 399 D~ 400 (426)
T 3c75_H 399 DA 400 (426)
T ss_dssp ET
T ss_pred EC
Confidence 43
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=6e-12 Score=102.84 Aligned_cols=218 Identities=11% Similarity=0.044 Sum_probs=146.9
Q ss_pred EEEEcCCCCEEEEee----------CCCceEEEEcCCCeeeEEecCC-------CcceEEEEEcCCCcEEEEEeC--CCc
Q 021925 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT 75 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--dg~ 75 (305)
.++++|||+.++.+. .++.|.++|..+++.+.++.-- ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888775 3678999999999988877521 123467899999999998874 578
Q ss_pred EEEEecCCCCeeEEEeeCCC--------ceEEEEecCCceEEEeCCcceeeee---------------------eEEEEE
Q 021925 76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNS---------------------AIHVKR 126 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 126 (305)
|.+.|+.+++.+..+..+.. ..-+.++++++++++.......... ....+-
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999999888875331 2235667777777665521111000 000000
Q ss_pred eecccCCCCCceEEEEecc-----------------------CCCeeEEEEcCCCCEEEEeeC----------CCcEEEE
Q 021925 127 IARDPADQGGESVLILKGP-----------------------QGRINRAVWGPLNRTIISAGE----------DAIVRIW 173 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~-----------------------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iw 173 (305)
.. . ...+..+... ......++++|+++.++.... ++.|.+.
T Consensus 282 ~s-----~-~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 282 PT-----Y-TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp EB-----T-TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred Ee-----C-CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 00 0 0011111110 111223788999887776542 3579999
Q ss_pred eCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEEEcCCceEEEEE-eeCCCeeEEEecCC
Q 021925 174 DTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLELIKTY-VTERPVNAVTMSPL 243 (305)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~ 243 (305)
|..+.+.+..+. -......+.|+|||+ .+++.. .++.|.++|+.+++.++++ ..+.... +..+||
T Consensus 356 D~~T~kvv~~I~----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~-~i~~~~ 423 (426)
T 3c75_H 356 NAETGERINKIE----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ-IITTHD 423 (426)
T ss_dssp ETTTCCEEEEEE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC-EEECCC
T ss_pred ECCCCeEEEEEE----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc-EEEcCC
Confidence 999999999886 334688999999999 888888 5999999999999999987 3333222 455553
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=5.7e-12 Score=111.75 Aligned_cols=228 Identities=11% Similarity=0.001 Sum_probs=136.4
Q ss_pred cCCCCEEEEeeCCCc---eEEEEcC-----CCeeeEEe------cCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEE
Q 021925 19 NKDGDLLFSCAKDHT---PTVWFAD-----NGERLGTY------RGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW 79 (305)
Q Consensus 19 ~~~~~~l~s~~~dg~---v~iw~~~-----~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vw 79 (305)
+|+|++++....++. -.+|... .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998887665433 5666543 33332221 2233478899999999999877653 359999
Q ss_pred ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee---------eeeeEEEEEeecccCCCCCceEEEEec--cCCC
Q 021925 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---------LNSAIHVKRIARDPADQGGESVLILKG--PQGR 148 (305)
Q Consensus 80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 148 (305)
|+.+++.+........+..++|+|+ +.++.+...... ....+..+++... ..+....+.. +...
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~----~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTP----QSADQPVFATPELPKR 269 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSC----GGGCEEEECCTTCTTC
T ss_pred ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCC----chhCEEEeccCCCCeE
Confidence 9999987654333333467899999 777766532210 0112333332111 1111222332 3335
Q ss_pred eeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCC--cEeeeeccccCCccceEEEEEcCCCCEEEEEeC----CCeEEE
Q 021925 149 INRAVWGPLNRTIISAGEDA-----IVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSL----DKSAKL 217 (305)
Q Consensus 149 i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i 217 (305)
+..+.|+|||++|+..+.++ .|++||+.++ +....+. .+...+.... +|+|+.|+..+. ++.|.+
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~ 345 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVR 345 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEEE-eccCCEEEEEECCCCCCCEEEE
Confidence 78999999999988777543 8999999876 3133443 2333344443 488888887775 456999
Q ss_pred EEcCCc--eEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 218 WDARTL--ELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 218 wd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
||+.++ +....+. ....+..++++ ++.++++...++..
T Consensus 346 ~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 346 VDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred EeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 999875 3333333 33446677777 45556666666653
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=3.7e-11 Score=96.56 Aligned_cols=237 Identities=10% Similarity=0.021 Sum_probs=151.9
Q ss_pred EEEcCCCCEEEEeeC-----CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe----------CCCcEEEEe
Q 021925 16 LKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWN 80 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~v~vwd 80 (305)
....|+++.++.... ++.|.+.|..+++.+.++..-..+ . ++++|||+++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789998888765 679999999999999998865555 4 99999999887775 367899999
Q ss_pred cCCCCeeEEEeeCC--------CceEEEEecCCceEEEeCC---cceeeeee---EEEEEeec---------c-----cC
Q 021925 81 VETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTD---PFMELNSA---IHVKRIAR---------D-----PA 132 (305)
Q Consensus 81 ~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~---------~-----~~ 132 (305)
..+.+.+..+..+. ....+.++|+++.++++.. +....... -.+..+.. . ..
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 99999999887543 6778999999998887642 21111100 00000000 0 00
Q ss_pred CCC-----------CceEEEEeccC----CCe-eEEEEc-CCCCEEEEeeCCCcEEEEeCCCCc--Eeeeeccc------
Q 021925 133 DQG-----------GESVLILKGPQ----GRI-NRAVWG-PLNRTIISAGEDAIVRIWDTETGK--LLKESDKE------ 187 (305)
Q Consensus 133 ~~~-----------~~~~~~~~~~~----~~i-~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~------ 187 (305)
... ++.......+. ..+ ....|. ++|++++ .+.+|.|++.|+.+.. ....+...
T Consensus 196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence 000 11111110110 111 112443 5665444 5557999999987654 23322100
Q ss_pred -cCCccceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCC-cEEEeeC-Cc
Q 021925 188 -TGHKKTITSLAKAADGSHFLTGSL----------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVCIGEP-QT 254 (305)
Q Consensus 188 -~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~-~~ 254 (305)
.-.......++++++++.++.... .++|.+.|+.+++.+..+..+.++++++++||++ .|+++.. ++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCC
Confidence 001223334677899888877643 2579999999999999999777899999999997 6666543 44
Q ss_pred E
Q 021925 255 I 255 (305)
Q Consensus 255 ~ 255 (305)
.
T Consensus 355 ~ 355 (386)
T 3sjl_D 355 T 355 (386)
T ss_dssp E
T ss_pred e
Confidence 4
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.1e-10 Score=91.81 Aligned_cols=194 Identities=11% Similarity=0.027 Sum_probs=124.8
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC----CCcceEEEEEcCCCcEEEEEeCC---------Cc
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----HNGAVWCCDVSRDSMTLITGSAD---------QT 75 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~d---------g~ 75 (305)
+...+.+++++++|+++++ . ++.|.+||.++++....... ....+.+++++|+|+++++...+ ..
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 3467899999999996554 4 56899999988765433321 12458899999999876654321 23
Q ss_pred EEEEecCC-CCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeeccc-CCCCCceEEEEeccCCCeeEEE
Q 021925 76 AKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 76 v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~ 153 (305)
-.+|.+.. ++.............++|+|+++.++++... ...+..++..... .....+....+..+.+.+..++
T Consensus 130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~ 205 (297)
T 3g4e_A 130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMC 205 (297)
T ss_dssp EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEE
T ss_pred cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCC----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeE
Confidence 45665543 3333333344556789999999877655432 1223333321000 0000011222233445678899
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc-CCCCEEEEEeC
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTGSL 211 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 211 (305)
++++|++.++...++.|..||..+++.+..+. .+...+++++|. |+++.|+.++.
T Consensus 206 ~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 206 IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---CCCCCceEEEEeCCCCCEEEEEcC
Confidence 99999888777778899999999899888876 345679999998 88777665543
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=110.01 Aligned_cols=202 Identities=13% Similarity=0.053 Sum_probs=112.1
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCC--Cce-
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PAR- 97 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~v~- 97 (305)
++..+++++.||.|+.||..+|+.+.++.. +.+.+..+..++..+++++.||.|+.||.++++.+..+.... .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999988875 455555566677788888899999999999998876654221 010
Q ss_pred EEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 021925 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177 (305)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 177 (305)
...+..++. ++++.. .+.+..++.. .++....+..+. ...++|++..+++++.|+.|+.||.++
T Consensus 86 sp~~~~~~~-v~~g~~-----dg~v~a~D~~------tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 86 SPCRSSDGI-LYMGKK-----QDIWYVIDLL------TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CSCC------CCCCEE-----EEEEEEECCC--------------------------------EEEEEEEEEEECCCSSS
T ss_pred CceEecCCE-EEEEeC-----CCEEEEEECC------CCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC
Confidence 011112222 222211 1222222221 122222222222 134566788899999999999999999
Q ss_pred CcEeeeeccccCCccceEEEEEcCCC---CEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE-EEecCCCC
Q 021925 178 GKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA-VTMSPLLD 245 (305)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~-~~~~~~~~ 245 (305)
++.+..+.. . .....++.++. ..+++++.||.++.||.++++.+.++....++.. ..++++|.
T Consensus 150 G~~~W~~~~---~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 150 RELRWNATY---F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp SSCCCEEEE---E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred CCEEEeEec---c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 987766541 1 11223333332 4677888999999999999999988886666543 44555653
No 219
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.39 E-value=1.5e-10 Score=97.12 Aligned_cols=224 Identities=11% Similarity=0.020 Sum_probs=154.8
Q ss_pred CCCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEE-c-CCCcEEEEEe------------------CCCcEEE
Q 021925 21 DGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDV-S-RDSMTLITGS------------------ADQTAKL 78 (305)
Q Consensus 21 ~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~-~-~~~~~l~s~~------------------~dg~v~v 78 (305)
||++++.... ++.|.+.|+.+.+..+.+.- .......+++ . |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877665 45799999999998874432 2345788888 5 8999998884 2467999
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee---------------------------------eeeeEEEE
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---------------------------------LNSAIHVK 125 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~ 125 (305)
.|.++.+...++..+.....++++|+++++++++.+... ..+.+.+.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 999999999999976788999999999999988743211 00112222
Q ss_pred EeecccCCCCCce-EEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCc------------EeeeeccccCCc
Q 021925 126 RIARDPADQGGES-VLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGK------------LLKESDKETGHK 191 (305)
Q Consensus 126 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~~ 191 (305)
+.... ..+. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ....+. -.
T Consensus 260 D~~~~----~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----vG 330 (595)
T 1fwx_A 260 DGRKE----ASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----LG 330 (595)
T ss_dssp ECSGG----GCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----CC
T ss_pred eCccc----CCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----CC
Confidence 22110 0112 222221 23456799999999888766 47899999998653 233332 34
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEEcCC----------ceEEEEEeeCCCe------eEEEecCCCCcEEEeeCC
Q 021925 192 KTITSLAKAADGSHFLTGSLDKSAKLWDART----------LELIKTYVTERPV------NAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~~ 253 (305)
.....++|+|+|...++.-.|++|.+||+.+ .+.+..+...... ..+..+|||++|+++..-
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 5688999999994455666799999999987 4566666633222 233568999999998543
No 220
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.39 E-value=1.3e-09 Score=88.47 Aligned_cols=197 Identities=10% Similarity=-0.034 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCEEEEeeC--CCceEEEEcCCCeeeEE-ecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCCCeeE
Q 021925 13 LTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~--dg~v~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
...++++|||++|+++.. ++.|.++| .+++.+.+ +.. .+. +.+.|++ +.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 457899999999998874 47899999 99998877 652 222 4455654 45667778999999999 887764
Q ss_pred EEee------CCCc-eEEEEecCCce-EEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe----------ccCCCee
Q 021925 89 TFNF------DSPA-RSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----------GPQGRIN 150 (305)
Q Consensus 89 ~~~~------~~~v-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~ 150 (305)
.... ..++ ....+.+++.. ++....+ .+...+.... .......+. .......
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~v~vid~~~~----~~~v~~~~~~~~~~~~~~~~~p~g~~ 270 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG------KILQADISAA----GATNKAPIDALSGGRKADTWRPGGWQ 270 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCc------eEEEEeccCC----cceEeeeeeecCCcccccceecCceE
Confidence 3321 1111 12344554433 3322211 1222121100 000001110 0122234
Q ss_pred EEEEcCCCCEEEEeeC----------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCC-EEEEEe-CCCeEEEE
Q 021925 151 RAVWGPLNRTIISAGE----------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLW 218 (305)
Q Consensus 151 ~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iw 218 (305)
.+.++|+++.++.+.. .+.|.++|..+++.+..+. .......++|+|||+ .++++. .++.|.++
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence 4788999988777653 3579999999999998885 334678999999999 777777 48999999
Q ss_pred EcCCceEEEEE
Q 021925 219 DARTLELIKTY 229 (305)
Q Consensus 219 d~~~~~~~~~~ 229 (305)
|+.+++.+..+
T Consensus 347 D~~t~~vv~~i 357 (373)
T 2mad_H 347 DAGAGDQDQST 357 (373)
T ss_pred ECCCCCEEeee
Confidence 99999999884
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.38 E-value=1.5e-09 Score=88.01 Aligned_cols=225 Identities=11% Similarity=0.038 Sum_probs=148.3
Q ss_pred CCCCEEEE-eeCCCceEEEEcCCC----eeeEEec------C-CCcceEEEEEcCCCcEEEEEeCC------CcEEEEec
Q 021925 20 KDGDLLFS-CAKDHTPTVWFADNG----ERLGTYR------G-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNV 81 (305)
Q Consensus 20 ~~~~~l~s-~~~dg~v~iw~~~~~----~~~~~~~------~-~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~ 81 (305)
+++++|+. +..++.|.++|+.+. +..++++ . -...-..+...|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77877665 556789999998755 6666663 1 12245678889999 77776655 78999999
Q ss_pred CCCCeeEEEeeC----CCceEEEEecCCceEEEeCC--------cce------eeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 82 ETGAQLFTFNFD----SPARSVDFAVGDKLAVITTD--------PFM------ELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 82 ~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
++++.+.++... .....+-|+|+++.++++.= +.. .....+.++++.. .+.+..+.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLT 245 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC------CcEeeEEe
Confidence 999999988733 22445888999998877730 000 2245566666542 23444444
Q ss_pred cc-C-CCeeEEEE--cCCCCEEEEeeC------CCcEEEEeCCCCcE--eeee--ccc--cC-----------CccceEE
Q 021925 144 GP-Q-GRINRAVW--GPLNRTIISAGE------DAIVRIWDTETGKL--LKES--DKE--TG-----------HKKTITS 196 (305)
Q Consensus 144 ~~-~-~~i~~~~~--~~~~~~l~~~~~------dg~i~iwd~~~~~~--~~~~--~~~--~~-----------~~~~v~~ 196 (305)
.. . .....+.| +|++++++.+++ +++|.+|....++. .+.+ ... .+ .......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 32 1 23344555 999998887774 56887766554321 1111 100 00 0245778
Q ss_pred EEEcCCCCEEEEEeC-CCeEEEEEcC---CceEEEEEeeCC---------------CeeEEEecCCCCcEEEee
Q 021925 197 LAKAADGSHFLTGSL-DKSAKLWDAR---TLELIKTYVTER---------------PVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 197 ~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~ 251 (305)
+.+++||++|.++.. .+.|.++|+. +.+.+..+..++ ....++++|||++|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999887775 7899999986 345666665431 368999999999999987
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.37 E-value=1.1e-09 Score=83.37 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCEEEEeeC--CCceEEEEcCCCeeeEEecCCCc-ceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeE
Q 021925 13 LTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~ 88 (305)
...+.|++++.+.++.+. ++.|.+.|..+++.+.++.-... ....+++. ++.| ++.-.++.+.++|..+.+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 579999998755555443 57999999999999888753221 22345554 4344 444558999999999988877
Q ss_pred EEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC
Q 021925 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (305)
Q Consensus 89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 168 (305)
++..+ . .. ....+++++.++.+..++
T Consensus 101 ~i~~g-~-------------------------------------------------~~----g~glt~Dg~~l~vs~gs~ 126 (266)
T 2iwa_A 101 NFTHQ-M-------------------------------------------------KD----GWGLATDGKILYGSDGTS 126 (266)
T ss_dssp EEECC-S-------------------------------------------------SS----CCEEEECSSSEEEECSSS
T ss_pred EEECC-C-------------------------------------------------CC----eEEEEECCCEEEEECCCC
Confidence 66422 0 00 012344666666666788
Q ss_pred cEEEEeCCCCcEeeeeccccC--CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------------
Q 021925 169 IVRIWDTETGKLLKESDKETG--HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------- 232 (305)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------- 232 (305)
.|.++|..+.+.+..+..... .-..++.+.|. +|...+....++.|.+.|..+++.+..+...
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~ 205 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDI 205 (266)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTC
T ss_pred eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccccc
Confidence 999999999988888763211 11246788888 6765555556889999999999999988732
Q ss_pred CCeeEEEecCCCCcEEEee-CCcEEEEEEee
Q 021925 233 RPVNAVTMSPLLDHVCIGE-PQTIKFMLLVY 262 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~ 262 (305)
...+.++++|+++.+++++ ..+....+.+.
T Consensus 206 ~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 206 DVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp CCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 2458999999988766654 44544444443
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=1.7e-09 Score=86.27 Aligned_cols=190 Identities=14% Similarity=0.010 Sum_probs=119.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC----CCcceEEEEEcCCCcEEEEEeC------CCcEEEE
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----HNGAVWCCDVSRDSMTLITGSA------DQTAKLW 79 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~------dg~v~vw 79 (305)
...+.+++++|+|+++++. .+ .|.+||..+++....... ....+.+++++|+|+++++... .+.|..+
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 4578999999999877754 44 499999888775433221 1246899999999987665432 2345555
Q ss_pred ecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec-cc-CCCCCceEEEEeccCCCeeEEEEcCC
Q 021925 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DP-ADQGGESVLILKGPQGRINRAVWGPL 157 (305)
Q Consensus 80 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (305)
+ +++.............++|+|+++.++++... ...+..++... .. .....+....+......+..++++++
T Consensus 167 ~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 167 A--KGKVTKLFADISIPNSICFSPDGTTGYFVDTK----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE 240 (326)
T ss_dssp E--TTEEEEEEEEESSEEEEEECTTSCEEEEEETT----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred e--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECC----CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence 5 44433333333456789999999876655321 12333333320 00 00111112222233455678999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc-CCCCEEEEEeC
Q 021925 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTGSL 211 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 211 (305)
|++.++...++.|.+||. +++.+..+. .+...+++++|+ ++++.|+.++.
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~---~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYE---VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEE---CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEE---CCCCCcEEEEEecCCCCEEEEEec
Confidence 987777767789999998 566666665 345579999998 88877655543
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=1.8e-09 Score=88.78 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=123.8
Q ss_pred EEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEe----cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 16 LKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTY----RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
++|+|+++.|+++..++ .|.+++..++.....+ ......+.+++++|++..|+.+..++.|..||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999988888766 7888887765544444 22456678999999544565577788999999987764322
Q ss_pred ----EeeC-CC-ce-EEEEecC-CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc---------------C
Q 021925 90 ----FNFD-SP-AR-SVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP---------------Q 146 (305)
Q Consensus 90 ----~~~~-~~-v~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 146 (305)
.... .. .. .++++|+ +.+.++.... ..+..++. . +. ...+.++ -
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-----~~I~~~~~--~-----g~-~~~~~g~~~~~g~~dg~~~~~~~ 322 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-----SSVYKITP--D-----GE-CEWFCGSATQKTVQDGLREEALF 322 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-----TEEEEECT--T-----CC-EEEEEECTTCCSCBCEEGGGCBC
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCC-----CEEEEEec--C-----CC-EEEEEeCCCCCCcCCCcccccEe
Confidence 1111 11 23 8999995 4444443321 11111111 0 11 1122221 2
Q ss_pred CCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcEeeeeccc--c---------CCccceEEEEEcCCCCEEEEEeCCCe
Q 021925 147 GRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKE--T---------GHKKTITSLAKAADGSHFLTGSLDKS 214 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~~dg~ 214 (305)
.....++++|+|+++++-. .++.|+.||+.++......... . ..-.....++++++|.++++-..+++
T Consensus 323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp SSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 4578899999999777777 7899999998777643222110 0 01245889999999888888888888
Q ss_pred EEEEEc
Q 021925 215 AKLWDA 220 (305)
Q Consensus 215 i~iwd~ 220 (305)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 988775
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.29 E-value=3.4e-09 Score=79.86 Aligned_cols=186 Identities=13% Similarity=0.127 Sum_probs=128.2
Q ss_pred ccccc--eEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEE-eCCCcEEEEecC
Q 021925 8 GHERP--LTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVE 82 (305)
Q Consensus 8 ~h~~~--v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~v~vwd~~ 82 (305)
.|... ...+.|+ ++.+..+.+.+| .|+++|+++++.+.++.-.. ........++++.|... -.++.+.++|.+
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 45444 4788998 677777777766 89999999999988886433 33332223334455444 458999999999
Q ss_pred CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+.+.+.++..+..- ...+++++.|+
T Consensus 116 t~~~~~ti~~~~eG-------------------------------------------------------~glt~dg~~L~ 140 (262)
T 3nol_A 116 NLRQVRSFNYDGEG-------------------------------------------------------WGLTHNDQYLI 140 (262)
T ss_dssp TCCEEEEEECSSCC-------------------------------------------------------CCEEECSSCEE
T ss_pred cCcEEEEEECCCCc-------------------------------------------------------eEEecCCCEEE
Confidence 99988877632110 11224466666
Q ss_pred EeeCCCcEEEEeCCCCcEeeeecccc-CCc-cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------- 232 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------- 232 (305)
.+..++.|.++|..+.+.+..+.... +.. ..++.+.+. +|+..+..-.++.|.+.|.++++.+..+...
T Consensus 141 ~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~ 219 (262)
T 3nol_A 141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP 219 (262)
T ss_dssp ECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred EECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence 66667889999999999888876421 111 335567776 6765555556889999999999999988732
Q ss_pred -----CCeeEEEecCCCCcEEEee
Q 021925 233 -----RPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 233 -----~~v~~~~~~~~~~~l~~~~ 251 (305)
.-.+.+|++|+++.|++++
T Consensus 220 ~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 220 LPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccCcCCceEEEEEcCCCCEEEEEC
Confidence 2458899999887766654
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=1.1e-09 Score=96.01 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=128.6
Q ss_pred EEEEEcCCCCEEEEeeCCCc-------------------eEEEEcCCCeeeEEecC--CC-------cceEEEEEcCCCc
Q 021925 14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM 65 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg~-------------------v~iw~~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~ 65 (305)
..++++|++..++.++.++. |..+|..+|+.+..++. |. .+........+|+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 36788998889998887763 99999999999887764 22 1222222223564
Q ss_pred ---EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 66 ---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
.++.++.+|.++++|.++++.+...........-.+.+....-+.... . .. .. ...+.....
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~-~-~~----------~~---~~~~~~~~~ 382 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEE-N-AA----------YW---KNGKRNLVT 382 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHH-H-HC----------TT---TSSSCEEES
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchh-h-cc----------cc---CCCCeeEeC
Confidence 788999999999999999999876653331111111100000000000 0 00 00 000000000
Q ss_pred eccC--CCeeEEEEcCCCCEEEEee---------------------------------------------CCCcEEEEeC
Q 021925 143 KGPQ--GRINRAVWGPLNRTIISAG---------------------------------------------EDAIVRIWDT 175 (305)
Q Consensus 143 ~~~~--~~i~~~~~~~~~~~l~~~~---------------------------------------------~dg~i~iwd~ 175 (305)
.+.. ..-..++++|+..++++.. .+|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0000 0011233444433333321 1478999999
Q ss_pred CCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCe--eEEEecCCCCc-EEEeeC
Q 021925 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLDH-VCIGEP 252 (305)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~-l~~~~~ 252 (305)
.+++.+..... ..+...-.+...+.+++.++.||.++.||.++|+.+.++.....+ .-+.+..+|+. +++.++
T Consensus 463 ~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 463 VKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 99999888762 222333345556778999999999999999999999999844333 34677788874 444444
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=1.3e-09 Score=86.08 Aligned_cols=201 Identities=11% Similarity=-0.038 Sum_probs=123.4
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCC----CcceEEEEEcCCCcEEEE----EeC-----
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLIT----GSA----- 72 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s----~~~----- 72 (305)
+..+...+..++++++|+++++...++.|.+|+.+ ++........ ...+.++++.|+|+..++ |..
T Consensus 81 ~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~ 159 (305)
T 3dr2_A 81 LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG 159 (305)
T ss_dssp EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence 33455678999999999977766666789999875 5532222111 134678999999988776 332
Q ss_pred --------CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce-eeeeeEEEEEeecccCCCCCceEEEEe
Q 021925 73 --------DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM-ELNSAIHVKRIARDPADQGGESVLILK 143 (305)
Q Consensus 73 --------dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
.+.|..+|..+++..... .......++|+|+++.++++..... .....+..+++.... .........
T Consensus 160 ~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~ 235 (305)
T 3dr2_A 160 CPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFAS 235 (305)
T ss_dssp CCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEEC
T ss_pred cccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEE
Confidence 256777887667654443 4456678999999987766543210 001223333332110 000011111
Q ss_pred ccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 144 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
...+....++++++|++ .+++.+ .|.+||. .++.+..+.. . ..+.+++|+++++.|..++.++ +..++
T Consensus 236 ~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~---~-~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPT---P-GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEEC---S-SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEEC---C-CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 22345567899999994 444444 4999998 4667766652 2 2588899999998888887664 43333
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.27 E-value=4.4e-08 Score=75.69 Aligned_cols=221 Identities=10% Similarity=0.018 Sum_probs=134.6
Q ss_pred cceEEEEEcCCCCEEEE-eeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeE
Q 021925 11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~ 88 (305)
..+..++|++++..|+. -..++.|..++...+.....+.........+++++++..|+ +-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 45678999996655554 44578999999876554333333335679999999655554 44557889999987543322
Q ss_pred EEeeC-CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEEEee-
Q 021925 89 TFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIISAG- 165 (305)
Q Consensus 89 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~- 165 (305)
..... .....+++.|++..++.+.... ....+...... +.....+ .........++++|+++.|+.+.
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCC----CCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 22222 4678899999655554443210 01111111111 1111112 22334678899999887666554
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCC--CeeEEEecCC
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSPL 243 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~ 243 (305)
..+.|..+|+.......... .......++.. ++..+++....+.|..+|..+++.+..+.... ....+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~----~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLE----GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEE----CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEec----CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 46899999997544333222 12234566654 34444444456899999999999988887332 4778888887
Q ss_pred CC
Q 021925 244 LD 245 (305)
Q Consensus 244 ~~ 245 (305)
+-
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 229
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.27 E-value=3.5e-09 Score=79.76 Aligned_cols=179 Identities=9% Similarity=0.046 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcce--EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
...+.|+ ++.+..+.+.+|.|+++|+++++.+.++ -. ... ..+++..+ +..+..-.++.+.++|.++.+.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4688887 3567777788899999999999988877 22 222 33555432 34444556899999999999988877
Q ss_pred eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (305)
Q Consensus 91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 170 (305)
.....- ..++ ++++.|+.+..+++|
T Consensus 133 ~~~~eG-----------------------------------------------------wGLt--~Dg~~L~vSdGs~~l 157 (268)
T 3nok_A 133 RYSGEG-----------------------------------------------------WGLC--YWNGKLVRSDGGTML 157 (268)
T ss_dssp ECSSCC-----------------------------------------------------CCEE--EETTEEEEECSSSEE
T ss_pred eCCCce-----------------------------------------------------eEEe--cCCCEEEEECCCCEE
Confidence 522110 1122 346667766678999
Q ss_pred EEEeCCCCcEeeeeccccCC--ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------------CC
Q 021925 171 RIWDTETGKLLKESDKETGH--KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------RP 234 (305)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~ 234 (305)
.++|..+.+.+..+...... -..++.+.|. +|+..+..-.++.|.+.|.++++.+..+... .-
T Consensus 158 ~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 158 TFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred EEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 99999999988887643211 1245677777 7765555556889999999999999988722 24
Q ss_pred eeEEEecCCCCcEEEee
Q 021925 235 VNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~ 251 (305)
.+.+|++|+++.|++.+
T Consensus 237 lNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEECTTTCCEEEEE
T ss_pred eEEEEEcCCCCEEEEeC
Confidence 58899999877666653
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=6.3e-10 Score=97.86 Aligned_cols=196 Identities=15% Similarity=0.050 Sum_probs=118.5
Q ss_pred CCCcceEEEEEcCCCcEEEEE-----eCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce--------
Q 021925 50 GHNGAVWCCDVSRDSMTLITG-----SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM-------- 116 (305)
Q Consensus 50 ~~~~~v~~i~~~~~~~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------- 116 (305)
+|...+..++|||||++|+-+ +.+..|++||+++++.+...........++|+ |++.++.+.....
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 355678999999999988743 23357999999999876543222224678899 9887777654321
Q ss_pred eeeeeEEEEEeecccCCCCCceEEEEec-cCCCeeEEEEcCCCCEEEEeeC----CCcEEEEeCCCCc-EeeeeccccCC
Q 021925 117 ELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGE----DAIVRIWDTETGK-LLKESDKETGH 190 (305)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~ 190 (305)
.....+..+.+... ......+..... +......+.|+|+|++|+.... +..|+++|+.++. ....+. .+
T Consensus 205 ~~~~~v~~~~lgt~--~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~ 279 (693)
T 3iuj_A 205 TDQHKVYFHRLGTA--QEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GD 279 (693)
T ss_dssp CCCCEEEEEETTSC--GGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CS
T ss_pred CCCcEEEEEECCCC--cccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CC
Confidence 11122333332211 111112222222 4455788999999998864432 3589999998763 333443 23
Q ss_pred ccceEEEEEcCCCCEEE-EEeCC---CeEEEEEcCCceE--EEEEe-eCCCeeEEEecCCCCcEEEeeCCc
Q 021925 191 KKTITSLAKAADGSHFL-TGSLD---KSAKLWDARTLEL--IKTYV-TERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 191 ~~~v~~~~~~~~~~~l~-~~~~d---g~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
....... ++++|..|+ ....+ +.|..+|+.++.. ...+. +...+. .|+++++.|+....++
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC
Confidence 3444443 556666554 44333 6799999987654 22333 444444 8999999888775544
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=3e-09 Score=85.43 Aligned_cols=203 Identities=8% Similarity=-0.049 Sum_probs=131.1
Q ss_pred ccccceEEEEEcCCCCEEEEeeC-----CCceEEEEcCCCeeeEEecCC------CcceEEEEEcCCCcE-EEEEe---C
Q 021925 8 GHERPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMT-LITGS---A 72 (305)
Q Consensus 8 ~h~~~v~~~~~~~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~-l~s~~---~ 72 (305)
+|...+..++++++|+++++-.. ++.|.+||+.+++.+..+... ...+..+++++++.. +++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45678999999999986665433 578999999999877766532 235689999986444 45544 5
Q ss_pred CCcEEEEecCCCCeeEEEee------------------------------CCCceEEEEecCCceEEEeCCcceeeeeeE
Q 021925 73 DQTAKLWNVETGAQLFTFNF------------------------------DSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (305)
++.|.+||+.+++....+.. ...+..++++|+++.++.+.... .
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~------~ 217 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS------T 217 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC------S
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC------C
Confidence 78999999988776554321 01246788999987776654321 1
Q ss_pred EEEEeecccCCC-C---Cce--EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925 123 HVKRIARDPADQ-G---GES--VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196 (305)
Q Consensus 123 ~~~~~~~~~~~~-~---~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 196 (305)
.++.+....... . .+. .....++.+....++++++|+++++...++.|.+||..+++...... . .....+.+
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~-~~~~~p~~ 295 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D-EKLSWTDS 295 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C-GGGSCEEE
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C-CceecCCe
Confidence 233332110000 0 000 00112344466789999999988888889999999985565433222 1 13456899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEE
Q 021925 197 LAKAADGSHFLTGSLDKSAKLW 218 (305)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~iw 218 (305)
+++.++++++++.+..+.+.+|
T Consensus 296 va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 296 FNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EEECTTSCEEEEECCGGGSGGG
T ss_pred eEECCCCcEEEEeCcccccccc
Confidence 9999999888777755544433
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1.6e-09 Score=94.77 Aligned_cols=233 Identities=13% Similarity=0.070 Sum_probs=149.0
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCC-C----cceEE-EEEcCCCcEEEEEeC------CCcEEEEecCCCCeeEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGH-N----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFT 89 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~----~~v~~-i~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~ 89 (305)
+..|+.++.|+.|..+|..+|+.+.++..+ . ..+.+ ... .++ .++.++. +|.|..+|.++++.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECC-EEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 567888889999999999999998887754 1 11211 111 134 5555543 69999999999999988
Q ss_pred EeeCCCc---------------------------------eEEEEecCCceEEEeCCcceeeee------------eEEE
Q 021925 90 FNFDSPA---------------------------------RSVDFAVGDKLAVITTDPFMELNS------------AIHV 124 (305)
Q Consensus 90 ~~~~~~v---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 124 (305)
+...... ..+++.+++..+++.......... ...+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 8732211 256788887777776543211000 0011
Q ss_pred EEeecccCCCCCceEEEEec--cC-------CCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCcEeeeeccccC---
Q 021925 125 KRIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKETG--- 189 (305)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--- 189 (305)
.-+. ...++..-.++. |. ....-+....+| +.++.++.+|.++++|.++++.+........
T Consensus 286 ~AlD----~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 286 VALD----PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp EEEC----TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred EEEE----CCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 1111 122333333332 21 112222333366 6788999999999999999998876542110
Q ss_pred -----Cccce------------------------EEEEEcCCCCEEEEEeC-----------------------------
Q 021925 190 -----HKKTI------------------------TSLAKAADGSHFLTGSL----------------------------- 211 (305)
Q Consensus 190 -----~~~~v------------------------~~~~~~~~~~~l~~~~~----------------------------- 211 (305)
...++ ..++++|++.++++...
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 00001 14688898888877543
Q ss_pred --------------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 212 --------------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 212 --------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
.|.|..||+.+++.+.++.+..++....+...+..+++++.++....+.
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 2789999999999999988877777777888888899888888744333
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.22 E-value=6.1e-09 Score=84.56 Aligned_cols=194 Identities=11% Similarity=0.060 Sum_probs=125.3
Q ss_pred ceEEEEEcCCCCEEEEeeCC------CceEEEEcCCCeeeEEecCCCc---ceEEEEEcCCCcEEEEEe-----------
Q 021925 12 PLTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGS----------- 71 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~----------- 71 (305)
.-..+...|+| .++++..+ |.|.+.|.++++.+.++....+ --..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 34566788999 77766555 7899999999999988863222 234588899999888874
Q ss_pred --------CCCcEEEEecCCCCeeEEEeeC---CCceEEEE--ecCCceEEEeCCc-ceeeeeeEEEEEeecccCCCCCc
Q 021925 72 --------ADQTAKLWNVETGAQLFTFNFD---SPARSVDF--AVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGE 137 (305)
Q Consensus 72 --------~dg~v~vwd~~~~~~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 137 (305)
.+.+|.+||+.+++.+.++... .....+.| +|+++.++++..- ...+.+.+..+.... ...+
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~----g~~~ 293 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED----GKWN 293 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET----TEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC----Ccee
Confidence 3689999999998888888764 24455655 9999888876530 000111222111110 0000
Q ss_pred eEEEE--ec----------------cCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCC---CcEeeeecccc-------
Q 021925 138 SVLIL--KG----------------PQGRINRAVWGPLNRTIISAGE-DAIVRIWDTET---GKLLKESDKET------- 188 (305)
Q Consensus 138 ~~~~~--~~----------------~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~------- 188 (305)
..+.+ .. -......+.+|||+++|.++.. .+.|.+||+.. .+.+..+....
T Consensus 294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~ 373 (462)
T 2ece_A 294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADH 373 (462)
T ss_dssp EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCC
T ss_pred EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccc
Confidence 00000 00 0245788999999999998876 68999999863 34444443210
Q ss_pred ----CCccceEEEEEcCCCCEEEEEe
Q 021925 189 ----GHKKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 189 ----~~~~~v~~~~~~~~~~~l~~~~ 210 (305)
........++++|||++|+++.
T Consensus 374 ~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 374 PAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0011357899999999999887
No 234
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.19 E-value=3.5e-08 Score=73.70 Aligned_cols=197 Identities=11% Similarity=0.063 Sum_probs=131.2
Q ss_pred cccc--ceEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecCCCcc-eEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 8 GHER--PLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 8 ~h~~--~v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.|.. -...+.|++ +.+..+.+.+| .|+.+|+.+++.+.++.-.... -..+++. +++..+..-.++.+.++|.+
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence 4543 366899987 55666666654 8999999999998887643321 1334443 23344445568999999999
Q ss_pred CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+.+.+.++..+..- ..++ ++++.|+
T Consensus 94 tl~~~~ti~~~~~G-----------------------------------------------------wglt--~dg~~L~ 118 (243)
T 3mbr_X 94 TLTPRARFRYPGEG-----------------------------------------------------WALT--SDDSHLY 118 (243)
T ss_dssp TTEEEEEEECSSCC-----------------------------------------------------CEEE--ECSSCEE
T ss_pred cCcEEEEEeCCCCc-----------------------------------------------------eEEe--eCCCEEE
Confidence 99888877632110 1222 3455566
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccccC--CccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC--------
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKETG--HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------- 232 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------- 232 (305)
.+..++.|.++|..+.+.+..+..... .-..++.+.+. +|+..+..-.+..|.+.|.++++.+..+...
T Consensus 119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~ 197 (243)
T 3mbr_X 119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA 197 (243)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS
T ss_pred EECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc
Confidence 666688999999999998888764211 11345667765 6665555556889999999999999988721
Q ss_pred ------CCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 233 ------RPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 233 ------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
.-.+.++++|+++.|++.+ +.|+..++..+
T Consensus 198 ~~~~~~~vlNGIA~d~~~~~lfVTG----------K~wp~~~~v~~ 233 (243)
T 3mbr_X 198 LTDSTNDVLNGIAFDAEHDRLFVTG----------KRWPMLYEIRL 233 (243)
T ss_dssp CCCTTSSCEEEEEEETTTTEEEEEE----------TTCSEEEEEEE
T ss_pred ccCCcCCceEEEEEcCCCCEEEEEC----------CCCCcEEEEEE
Confidence 2357899999877666553 45555555444
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=4.1e-08 Score=86.08 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=147.2
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCC--CcceEEEEEcC---CCcEEEEEe------CCCcEEEEecCCCCeeEEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSR---DSMTLITGS------ADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~i~~~~---~~~~l~s~~------~dg~v~vwd~~~~~~~~~~ 90 (305)
+..|+.++.|+.|..+|..+|+.+.++... ......+..+| ++. ++.++ .+|.|..||.++++.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 457888889999999999999988776642 11111111222 454 44443 3689999999999999887
Q ss_pred eeC--CC------------------------------ceEEEEecCCceEEEeCCcceee--------------eeeEEE
Q 021925 91 NFD--SP------------------------------ARSVDFAVGDKLAVITTDPFMEL--------------NSAIHV 124 (305)
Q Consensus 91 ~~~--~~------------------------------v~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 124 (305)
... .+ -..+++.|+...++++....... ...+..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 621 00 12577888777777766532100 001222
Q ss_pred EEeecccCCCCCceEEEEec--cC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCcEeeeecccc----
Q 021925 125 KRIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLNR---TIISAGEDAIVRIWDTETGKLLKESDKET---- 188 (305)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 188 (305)
.+. ..++.+-.++. |. ..+.......+|+ .++.++.+|.++++|.++++.+.......
T Consensus 280 lD~------~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 280 VNA------DTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp EET------TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred EEc------cCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 222 23344433332 21 1111112222454 78899999999999999999874432110
Q ss_pred ---------------------CCcc-----------ceEEEEEcCCCCEEEEEeC-------------------------
Q 021925 189 ---------------------GHKK-----------TITSLAKAADGSHFLTGSL------------------------- 211 (305)
Q Consensus 189 ---------------------~~~~-----------~v~~~~~~~~~~~l~~~~~------------------------- 211 (305)
.... .-..++++|+..++++...
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 0000 0112678888777776532
Q ss_pred --------------------CCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeehhhhhhhhh
Q 021925 212 --------------------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYLFVLFLDIL 271 (305)
Q Consensus 212 --------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
+|.|+.||+.+++.+.++....+.....+...+.++++|+.++. ++.++......
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~-----l~a~D~~tG~~ 508 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGR-----VIAYAADTGEK 508 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-----EEEEETTTCCE
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCc-----EEEEECCCCcc
Confidence 37899999999999999887776666677788889999988887 44444444333
Q ss_pred h
Q 021925 272 F 272 (305)
Q Consensus 272 ~ 272 (305)
+
T Consensus 509 l 509 (689)
T 1yiq_A 509 L 509 (689)
T ss_dssp E
T ss_pred c
Confidence 3
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=6.7e-09 Score=90.82 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=129.7
Q ss_pred CCceEEEEcCCCeeeEEecCCCcc--------------------------------eEEEEEcCCCcEEEEEeCCC----
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGA--------------------------------VWCCDVSRDSMTLITGSADQ---- 74 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~--------------------------------v~~i~~~~~~~~l~s~~~dg---- 74 (305)
+|.|+.+|..+|+.+.++...... ...++++|++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999988777532211 12567888888888877664
Q ss_pred ---------------cEEEEecCCCCeeEEEeeCC----------CceEEEEecCC---ceEEEeCCcc-eeeee---eE
Q 021925 75 ---------------TAKLWNVETGAQLFTFNFDS----------PARSVDFAVGD---KLAVITTDPF-MELNS---AI 122 (305)
Q Consensus 75 ---------------~v~vwd~~~~~~~~~~~~~~----------~v~~~~~~~~~---~~~~~~~~~~-~~~~~---~~ 122 (305)
.|..+|.++++.+..++... ....+....++ ..++.+.... +.... .-
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 49999999999998887321 12222333355 3444443211 11110 01
Q ss_pred EEEEeecccCC------CCCceEE------------EEeccC--CCeeEEEEcCCCCEEEEeeC----------------
Q 021925 123 HVKRIARDPAD------QGGESVL------------ILKGPQ--GRINRAVWGPLNRTIISAGE---------------- 166 (305)
Q Consensus 123 ~~~~~~~~~~~------~~~~~~~------------~~~~~~--~~i~~~~~~~~~~~l~~~~~---------------- 166 (305)
.++........ ....++. ...+.. ..-..++++|++.++++...
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 11221111000 0011110 000000 01125788998888776543
Q ss_pred ---------------------------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 167 ---------------------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 167 ---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
.|.|..||+.+++.+..+. +..++....+...+..++.++.||.+++||
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE----HVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC----CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 2789999999999888875 333344444566777888999999999999
Q ss_pred cCCceEEEEEeeCCCe--eEEEecCCCCcEE
Q 021925 220 ARTLELIKTYVTERPV--NAVTMSPLLDHVC 248 (305)
Q Consensus 220 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~ 248 (305)
.++++.+.++.....+ .-+.+.++|+..+
T Consensus 505 ~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 505 AATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 9999999999844433 4456668886443
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=4e-08 Score=82.57 Aligned_cols=219 Identities=8% Similarity=-0.019 Sum_probs=145.2
Q ss_pred EEEeeCCCceEEEEcCCCeeeEEec---------------------C------------C------CcceEEEEEcC---
Q 021925 25 LFSCAKDHTPTVWFADNGERLGTYR---------------------G------------H------NGAVWCCDVSR--- 62 (305)
Q Consensus 25 l~s~~~dg~v~iw~~~~~~~~~~~~---------------------~------------~------~~~v~~i~~~~--- 62 (305)
+.+|+..|.++|+-+.+++.++.+. . + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 6678899999999999888777652 0 0 12222344554
Q ss_pred --CCcEEEEEeC-CCcEEEEecCCCCeeEEEe--eCCCceEEEE-e-cCCceEEEeCCcce-------------eeeeeE
Q 021925 63 --DSMTLITGSA-DQTAKLWNVETGAQLFTFN--FDSPARSVDF-A-VGDKLAVITTDPFM-------------ELNSAI 122 (305)
Q Consensus 63 --~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~~~~~~~~~~-------------~~~~~~ 122 (305)
||+++..... ++.|.+.|+.+.++...+. ....+..+++ . |++.+++++..... ...+.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7777766655 5679999999999888555 4456778887 4 89999888853211 112222
Q ss_pred EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC----------------------------------
Q 021925 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA---------------------------------- 168 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------------------------- 168 (305)
...+. ...+....+.-.. ....++.+|+|+++++.+.+.
T Consensus 178 tvID~------~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 178 TAVDA------DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp EEEET------TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred EEEEC------CCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 22222 2234444443222 456688999999998887553
Q ss_pred ----cEEEEeCCC--CcE-eeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce------------EEEE
Q 021925 169 ----IVRIWDTET--GKL-LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE------------LIKT 228 (305)
Q Consensus 169 ----~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~ 228 (305)
.|.+.|.++ ++. +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+ .+.+
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eEECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 377777776 433 34443 233556789999999876655 58899999999763 4556
Q ss_pred EeeCCCeeEEEecCCCCcEEEe-eCCcE
Q 021925 229 YVTERPVNAVTMSPLLDHVCIG-EPQTI 255 (305)
Q Consensus 229 ~~~~~~v~~~~~~~~~~~l~~~-~~~~~ 255 (305)
...+.....++|+|+| .+.+. .-++.
T Consensus 327 v~vG~gP~h~aF~~dG-~aY~t~~ldsq 353 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRG-NAYTSLFLDSQ 353 (595)
T ss_dssp CBCCSCEEEEEECTTS-EEEEEETTTTE
T ss_pred cCCCCCcceEEECCCC-eEEEEEecCCc
Confidence 6667778999999999 55554 44444
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=4.2e-08 Score=78.08 Aligned_cols=210 Identities=13% Similarity=0.094 Sum_probs=137.7
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee-CCCceEEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVD 100 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~ 100 (305)
+..+..++.++.|..+|.. ++...........+.++...+++. +..++.++.|..+|.+ ++....... ...+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 4467778888999999987 777666665555566777777775 6667788999999998 877776663 34556666
Q ss_pred EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE
Q 021925 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180 (305)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 180 (305)
..+++.+.+.. .....++ ..++...........+.++...+++. +..++.++.|..+|. +++.
T Consensus 184 ~d~~g~l~v~t-~~l~~~d--------------~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~ 246 (330)
T 3hxj_A 184 IGKDGTIYFGS-DKVYAIN--------------PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTE 246 (330)
T ss_dssp ECTTCCEEEES-SSEEEEC--------------TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCE
T ss_pred EcCCCEEEEEe-CEEEEEC--------------CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCE
Confidence 66777765554 2211111 11223333334445677888888775 556677888888884 5666
Q ss_pred eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 181 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 257 (305)
+..+.. ....+..+...+++ .|..++.+|.+..+|. +++.+..+. ....+.++...++|+ |.+++.++...
T Consensus 247 ~~~~~~---~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~ 318 (330)
T 3hxj_A 247 KWRFKT---GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFY 318 (330)
T ss_dssp EEEEEC---SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEE
T ss_pred eEEeeC---CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEE
Confidence 655542 22233345555555 5777888889999996 677777766 445567777878876 55577777643
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.10 E-value=5.3e-07 Score=71.61 Aligned_cols=238 Identities=9% Similarity=-0.018 Sum_probs=138.8
Q ss_pred eEecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC--------------------CCcceEEEEEcC-
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--------------------HNGAVWCCDVSR- 62 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--------------------~~~~v~~i~~~~- 62 (305)
+.+.+.-....+++|+++|+++.++..++.|..|+..+++.. .+.. ....+.++++.+
T Consensus 12 i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 12 ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp EEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred eecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 345554455778999999987888888999999987765432 2210 012578999997
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCeeEEEe------eCCCceEEEEec-CCceEEEeCCcceee----------eeeEEEE
Q 021925 63 DSMTLITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAV-GDKLAVITTDPFMEL----------NSAIHVK 125 (305)
Q Consensus 63 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~~~~v~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~ 125 (305)
+++ |+.+...+.|..+|..+++. ..+. .......+++.+ ++.+.++........ .....++
T Consensus 91 ~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 91 NNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp TTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred CCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 664 55554445588888765532 2221 113467889999 887766654311000 0011222
Q ss_pred EeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCc--EeeeeccccCCccceEEEEEcCC
Q 021925 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAAD 202 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 202 (305)
.+.. .. .....+.........++++|+++.|+.+ ...+.|..+++.... ....+.. ... ...++++++
T Consensus 169 ~~d~----~~-~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 169 KYDP----ST-KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNAD 239 (322)
T ss_dssp EEET----TT-TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTT
T ss_pred EEeC----CC-CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCC
Confidence 2211 01 1122222223445679999999866655 456899999987521 1112211 112 678999999
Q ss_pred CCEEEEEeC----------CCeEEEEEcCCceEEEEEeeC-----CCeeEEEecCCCCcEEEeeCCcE
Q 021925 203 GSHFLTGSL----------DKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 203 ~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
|++.++... .+.|..+|. .++.+..+... ..+.++++ .++++.++....+.
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS 305 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE
T ss_pred CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc
Confidence 987666544 467888886 47777777632 24566666 35544444334443
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=4.8e-07 Score=73.50 Aligned_cols=215 Identities=9% Similarity=0.076 Sum_probs=124.2
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCC---------CcceE-EEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGH---------NGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---------~~~v~-~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
+..+++++.++.|..+|..+++.+.+.... ...+. .+.. ++..++.++.++.|..+|.++++.+....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 557888888999999999999988766542 12232 2222 34577888889999999999999998887
Q ss_pred eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCC-----eeEEEEcCCCCEEEEeeC
Q 021925 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-----INRAVWGPLNRTIISAGE 166 (305)
Q Consensus 92 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~ 166 (305)
....+.......++.+++...++.+ ...+. ..++........... ....... +..++.++.
T Consensus 131 ~~~~~~~~p~~~~~~v~v~~~~g~l------~~~d~------~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~ 196 (376)
T 3q7m_A 131 VAGEALSRPVVSDGLVLIHTSNGQL------QALNE------ADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD 196 (376)
T ss_dssp CSSCCCSCCEEETTEEEEECTTSEE------EEEET------TTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT
T ss_pred CCCceEcCCEEECCEEEEEcCCCeE------EEEEC------CCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC
Confidence 6554433222334544444333211 11111 111222222111100 0111122 456788888
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCc----cceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEe
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHK----KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 240 (305)
++.+..+|..+++.+.......... ..+..+.-.| .+..++.++.++.+..+|.++++.+....... ...+..
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~ 275 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV 275 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE
Confidence 9999999999999877664211000 0000011111 24567888889999999999999887665332 333333
Q ss_pred cCCCCcEEEeeCCcE
Q 021925 241 SPLLDHVCIGEPQTI 255 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~ 255 (305)
++..+++++.++.
T Consensus 276 --~~~~l~~~~~~g~ 288 (376)
T 3q7m_A 276 --DGNRIYLVDQNDR 288 (376)
T ss_dssp --ETTEEEEEETTCC
T ss_pred --ECCEEEEEcCCCe
Confidence 3455666655544
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=94.90 Aligned_cols=172 Identities=12% Similarity=0.064 Sum_probs=88.1
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 63 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
++..+++++.||.|..||.++++.+..+.. ..+.+..+..++..++.++. ++.+..++... ++.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~-----dg~l~a~d~~t------G~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPN-----DGSLYTLGSKN------NEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTT-----TCCEEEC-----------CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCC-----CCEEEEEECCC------Cceeeee
Confidence 567899999999999999999999998887 56665556666666665432 22222222211 1111111
Q ss_pred eccCC-Cee-EEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 143 KGPQG-RIN-RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 143 ~~~~~-~i~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
..+.. .+. +.... .+..+++++.|+.|+.||.++++.+..+.. +. ...++|++..+++++.|+.|+.||.
T Consensus 76 ~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 76 PFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSPSTSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp SCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCS
T ss_pred eccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccccCCEEEEEecCCEEEEEEC
Confidence 11100 000 00111 345677888899999999999998877752 22 1345678888999999999999999
Q ss_pred CCceEEEEEeeCCCeeEEEecCCC---CcEEEeeCCcE
Q 021925 221 RTLELIKTYVTERPVNAVTMSPLL---DHVCIGEPQTI 255 (305)
Q Consensus 221 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~ 255 (305)
++++.+..+.... ....+++++. ..+++++.++.
T Consensus 148 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~ 184 (369)
T 2hz6_A 148 KTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGL 184 (369)
T ss_dssp SSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCE
T ss_pred CCCCEEEeEeccc-ccCccccCCccccceEEEECCCCE
Confidence 9998877665221 2333444432 45666766665
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.01 E-value=7.6e-07 Score=72.32 Aligned_cols=210 Identities=9% Similarity=0.059 Sum_probs=119.1
Q ss_pred EEEEeeCCCceEEEEcCCCeeeEEecCCCcce-----EEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCC---
Q 021925 24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP--- 95 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--- 95 (305)
.++.++.++.|..+|..+++.+.......... ...... +..++.++.++.|..+|.++++.+.......+
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 55666667777777777777666555322111 111121 34677788899999999999999887764321
Q ss_pred --------ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 96 --------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 96 --------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
+.......++.+.+...++. +...+. ..++...... ......+.. ++..++.++.+
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~------l~~~d~------~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~ 286 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAYNGN------LTALDL------RSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQN 286 (376)
T ss_dssp -------CCCCCCEEETTEEEEECTTSC------EEEEET------TTCCEEEEEC--CCCEEEEEE--ETTEEEEEETT
T ss_pred cccccccccCCCcEEECCEEEEEecCcE------EEEEEC------CCCcEEeecc--CCCCCCceE--ECCEEEEEcCC
Confidence 11111112333333332221 111111 1122222111 122233333 36678888889
Q ss_pred CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-CCCeeEEEecCCCCc
Q 021925 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDH 246 (305)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 246 (305)
+.|..+|..+++.+...... ....+..... .+..|+.++.+|.+..+|.++++.+..... ...+.+..... +..
T Consensus 287 g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~ 361 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDL--LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGK 361 (376)
T ss_dssp CCEEEEETTTCCEEEEECTT--TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTE
T ss_pred CeEEEEECCCCcEEEeeccc--CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCE
Confidence 99999999999987766421 1112222222 245788899999999999999999888774 34443222222 446
Q ss_pred EEEeeCCcEE
Q 021925 247 VCIGEPQTIK 256 (305)
Q Consensus 247 l~~~~~~~~~ 256 (305)
|++++.++..
T Consensus 362 l~v~~~~G~l 371 (376)
T 3q7m_A 362 LLIQAKDGTV 371 (376)
T ss_dssp EEEEBTTSCE
T ss_pred EEEEeCCCEE
Confidence 7777777653
No 243
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.95 E-value=3.2e-06 Score=66.59 Aligned_cols=224 Identities=9% Similarity=-0.021 Sum_probs=130.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~ 88 (305)
.....++|+++|+++++-..++.|..||... +....+. .......+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 4577899999999777766788999998764 4333333 345689999999998665543322 46667777776543
Q ss_pred EEeeC--CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCc-eEEEE---------eccCCCeeEEEEcC
Q 021925 89 TFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLIL---------KGPQGRINRAVWGP 156 (305)
Q Consensus 89 ~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~i~~~~~~~ 156 (305)
..... .....++..+++..++..... + .++.+.... .. .+... .........+ +|
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~-----g--~i~~~d~~~----~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYR-----G--AIWLIDVVQ----PSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTT-----T--EEEEEETTT----TEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCC-----C--eEEEEeCCC----CcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 33322 122334444444433333211 1 111111100 00 00000 0111223445 78
Q ss_pred CCCEEEEee-CCCcEEEEeCCC-CcE--eeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE--EEe
Q 021925 157 LNRTIISAG-EDAIVRIWDTET-GKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYV 230 (305)
Q Consensus 157 ~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~ 230 (305)
+++.|+.+. ..+.|..+|+.. ++. ...+. .......++++++|+++++....+.|.++|.. ++... .+.
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~----~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe----ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 887666554 568999999874 321 11111 11235568899999887777778899999975 65533 233
Q ss_pred eC-CCeeEEEec---CCCCcEEEeeCCc
Q 021925 231 TE-RPVNAVTMS---PLLDHVCIGEPQT 254 (305)
Q Consensus 231 ~~-~~v~~~~~~---~~~~~l~~~~~~~ 254 (305)
.. ....+++|. |+++.|++++..+
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 22 568899998 8988887776544
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=7.1e-08 Score=76.76 Aligned_cols=215 Identities=14% Similarity=0.048 Sum_probs=128.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
..+.++...++|. |..++.+ |..+|. +++.+..+...........+. +..+..++.++.|..+|.+ ++.....
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 3456666666664 4445544 888875 565544443322222233333 4467778888999999988 7777666
Q ss_pred eeC-CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCc
Q 021925 91 NFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (305)
Q Consensus 91 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 169 (305)
... ..+.++...+++.+.+...+..+.... . . ++...........+.++...+++...+. + +.
T Consensus 133 ~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d------~------~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~ 196 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGTIYVGSNDNYLYAIN------P------D-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DK 196 (330)
T ss_dssp ECSSCCCSCCEECTTSCEEEECTTSEEEEEC------T------T-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SS
T ss_pred cCCCceeeeeEEcCCCEEEEEcCCCEEEEEC------C------C-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CE
Confidence 633 345566666677766554432221111 0 1 2333333444456677777777775544 4 88
Q ss_pred EEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-CCeeEEEecCCCCcEE
Q 021925 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVC 248 (305)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~ 248 (305)
|..+| .+++...... .....+.++...++|. |..++.++.+..+| .+++.+..+... ..+.++...+++ .|.
T Consensus 197 l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~ 269 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIY 269 (330)
T ss_dssp EEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEE
T ss_pred EEEEC-CCCcEEEEEc---cCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEE
Confidence 99999 7777766655 2345677788888775 56677788899887 456666666533 334556666666 456
Q ss_pred EeeCCcE
Q 021925 249 IGEPQTI 255 (305)
Q Consensus 249 ~~~~~~~ 255 (305)
+++.++.
T Consensus 270 v~t~~gg 276 (330)
T 3hxj_A 270 FGSYDGH 276 (330)
T ss_dssp EECTTCE
T ss_pred EecCCCC
Confidence 6666654
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=1.2e-07 Score=82.86 Aligned_cols=217 Identities=12% Similarity=0.135 Sum_probs=124.4
Q ss_pred EEEEEcCCCCEEEEeeCCC-------------------ceEEEEcCCCeeeEEecC--CC-------cceEEEEEcCCCc
Q 021925 14 TYLKYNKDGDLLFSCAKDH-------------------TPTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM 65 (305)
Q Consensus 14 ~~~~~~~~~~~l~s~~~dg-------------------~v~iw~~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~ 65 (305)
..++++|++..++.++.++ .|..+|..+|+.+..++. |. .+.....+..+|+
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 4578888888888887766 389999999998877764 22 2333333333664
Q ss_pred ---EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE
Q 021925 66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (305)
Q Consensus 66 ---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (305)
.++.++.+|.+.++|.++++.+.............+.+....-........ ..+.....
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~------------------~~~~~~~~ 374 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY------------------EKEPIVMW 374 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC------------------SSSCEEES
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc------------------cCCeeEEC
Confidence 688999999999999999999876653321111111110000000000000 00000000
Q ss_pred eccCC--CeeEEEEcCCCCEEE------------------------------------EeeCCCcEEEEeCCCCcEeeee
Q 021925 143 KGPQG--RINRAVWGPLNRTII------------------------------------SAGEDAIVRIWDTETGKLLKES 184 (305)
Q Consensus 143 ~~~~~--~i~~~~~~~~~~~l~------------------------------------~~~~dg~i~iwd~~~~~~~~~~ 184 (305)
.+..+ .-..++++|+...++ ....+|.|..||+.+++.+.+.
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~ 454 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV 454 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence 00000 001122222222221 1224588999999999988777
Q ss_pred ccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCe--eEEEecCCCC-cEEEeeC
Q 021925 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLD-HVCIGEP 252 (305)
Q Consensus 185 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~-~l~~~~~ 252 (305)
.. ..+.....+...+.++++++.||.++.||.++++.+..+.....+ .-+.+..+|+ +++++++
T Consensus 455 ~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 455 PY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp EE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 52 222222233445778899999999999999999999998854433 2344456666 5555544
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.89 E-value=9e-06 Score=62.59 Aligned_cols=215 Identities=8% Similarity=-0.030 Sum_probs=122.8
Q ss_pred CEEEEeeCCCceEEEEcCCCeee-----EEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEeeC-CC
Q 021925 23 DLLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFD-SP 95 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~-~~ 95 (305)
++|+.+.. +.|+.+++...... ..+......+.+++|++++..|+ +-..++.|..++............. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 44555543 47888887654321 11221234578999999665555 4445789999998766543333322 46
Q ss_pred ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC---CCcEEE
Q 021925 96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRI 172 (305)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i 172 (305)
...+++.+++..++.+.... ..+...+.. .................++++|++..|+.+.. .+.|..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~----~~I~~~~~~------g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQL----DRIEVAKMD------GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETT------SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred ccEEEEEecCCeEEEEECCC----CEEEEEEcC------CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 78999999765555543221 122222211 01111112222246788999997666655553 368888
Q ss_pred EeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEee
Q 021925 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
+++.... ...+.. ........+++++++..|+. -...+.|.++|..................++.. +..|.++.
T Consensus 151 ~~~dg~~-~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~ 225 (267)
T 1npe_A 151 SHMDGTN-RRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTD 225 (267)
T ss_dssp EETTSCC-CEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEE
T ss_pred EecCCCC-cEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEE
Confidence 8876432 222211 12346788999998766654 445689999999865444333333334566654 45566655
Q ss_pred CC
Q 021925 252 PQ 253 (305)
Q Consensus 252 ~~ 253 (305)
..
T Consensus 226 ~~ 227 (267)
T 1npe_A 226 WK 227 (267)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.85 E-value=3e-06 Score=72.68 Aligned_cols=231 Identities=9% Similarity=-0.015 Sum_probs=136.1
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----ceEE-EEEcCCCcEEEEEeC------CCcEEEEecCCCCeeEEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~-i~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~ 90 (305)
+..++.++.|+.+..+|..+|+.+.+...... .+.+ .... ++ .++.++. ++.|..+|.++++.+.++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 45677788899999999999998876653210 1111 1111 44 4555554 799999999999999888
Q ss_pred eeCCCc---------------------------------------eEEEEecCCceEEEeCCcce-----------eeee
Q 021925 91 NFDSPA---------------------------------------RSVDFAVGDKLAVITTDPFM-----------ELNS 120 (305)
Q Consensus 91 ~~~~~v---------------------------------------~~~~~~~~~~~~~~~~~~~~-----------~~~~ 120 (305)
...... ..+++.+....++.+..... .+..
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 743322 12556665555555442110 0001
Q ss_pred eEEEEEeecccCCCCCceEEEEec--cCC-------CeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCcEeeeecccc
Q 021925 121 AIHVKRIARDPADQGGESVLILKG--PQG-------RINRAVWGPLNR---TIISAGEDAIVRIWDTETGKLLKESDKET 188 (305)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 188 (305)
.+...+. ..++.+-.++. |.. ...-+...++|+ .++.++.+|.++++|..+++.+.......
T Consensus 273 ~v~Ald~------~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~ 346 (571)
T 2ad6_A 273 TIWGRDL------DTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp EEEEEET------TTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred EEEEEec------CCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence 1111111 12333333321 110 111122224563 56778889999999999999877654211
Q ss_pred CC----------ccce--------------------------EEEEEcCCCCEEEEEe----------------------
Q 021925 189 GH----------KKTI--------------------------TSLAKAADGSHFLTGS---------------------- 210 (305)
Q Consensus 189 ~~----------~~~v--------------------------~~~~~~~~~~~l~~~~---------------------- 210 (305)
.. ..++ ..++++|+...+++.+
T Consensus 347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence 00 0111 2357788777766653
Q ss_pred ---------------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 211 ---------------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 211 ---------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
.+|.|..||+.+++.+.++....++....+...+..+++++.++....+.
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 35789999999999998888666555544555566777787777644333
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.81 E-value=1.2e-06 Score=75.16 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeE--EEecCC
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL 243 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~ 243 (305)
.+|.|.-||+.+++.+.+.... .++..-.....+.+++.++.||.++.+|.++|+.+.+++....+.+ +.+..+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~ 539 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD 539 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence 3688999999999988776521 1111111112356788899999999999999999999986555543 667678
Q ss_pred CC-cEEEeeC
Q 021925 244 LD-HVCIGEP 252 (305)
Q Consensus 244 ~~-~l~~~~~ 252 (305)
|+ ++++.++
T Consensus 540 G~qYv~~~~G 549 (582)
T 1flg_A 540 GEQYLGVTVG 549 (582)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEcc
Confidence 87 4555444
No 249
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.80 E-value=9.4e-07 Score=77.28 Aligned_cols=238 Identities=11% Similarity=0.049 Sum_probs=129.3
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------ceEEEEcCCCeee--EEec-CCCcceEEEEEcCCCcEEEEEeC-CCcEEE
Q 021925 15 YLKYNK-DGDLLFSCAKDH-----------TPTVWFADNGERL--GTYR-GHNGAVWCCDVSRDSMTLITGSA-DQTAKL 78 (305)
Q Consensus 15 ~~~~~~-~~~~l~s~~~dg-----------~v~iw~~~~~~~~--~~~~-~~~~~v~~i~~~~~~~~l~s~~~-dg~v~v 78 (305)
+.++.+ +++.++.|+.+. .+.+||..+++.. ..+. .+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 5788998877532 2232 23333445777889999999884 568999
Q ss_pred EecCCCCeeEEEe--eCCCceEEEEecCCceEEEeC-CcceeeeeeEEEEEeecc------------cCCC-------CC
Q 021925 79 WNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARD------------PADQ-------GG 136 (305)
Q Consensus 79 wd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~-------~~ 136 (305)
||..+++-...-. ....-.+++..++++++++++ .........+..++.... .... ..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9988764332212 122223456667888888776 221111222222222110 0000 00
Q ss_pred ceEEEEeccC---------------------------------------CCeeEEEEc-CCCCEEEEeeCCC--------
Q 021925 137 ESVLILKGPQ---------------------------------------GRINRAVWG-PLNRTIISAGEDA-------- 168 (305)
Q Consensus 137 ~~~~~~~~~~---------------------------------------~~i~~~~~~-~~~~~l~~~~~dg-------- 168 (305)
..+..+.+.. ..-.++.+. .+++.++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 0000111000 011233333 3567777877532
Q ss_pred ---cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCceEEEEEe--eC
Q 021925 169 ---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----------KSAKLWDARTLELIKTYV--TE 232 (305)
Q Consensus 169 ---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~--~~ 232 (305)
.|.+||..+.+..............-.+++..|++++++.|+.+ ..+.+||..+.+-...-. ..
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 68888887765443320000111122345567899999999864 468999998765432211 11
Q ss_pred C-CeeEEEecCCCCcEEEeeC
Q 021925 233 R-PVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 233 ~-~v~~~~~~~~~~~l~~~~~ 252 (305)
. ...+..+.|+++.+++|+.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred cccccHhhcCCCcEEEecCCC
Confidence 1 1234556799999999875
No 250
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.78 E-value=1.4e-06 Score=70.11 Aligned_cols=181 Identities=7% Similarity=-0.104 Sum_probs=114.9
Q ss_pred cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcce-----eeeeeEEEEEeecccCCCCCceEEEEecc----
Q 021925 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHVKRIARDPADQGGESVLILKGP---- 145 (305)
Q Consensus 75 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 145 (305)
+|.+.|..+++.+.++...... .+.++|+++.++++..... ...+.+.+++. ...+.+..+..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~------~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP------VTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT------TTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC------CCCCEEEEEECCCccc
Confidence 7889999999999999966666 8999999999988752100 11233333333 234455555432
Q ss_pred ---CCCeeEEEEcCCCCEEEEeeC--CCcEEE--EeCCCCcEee---------------------------eecc-----
Q 021925 146 ---QGRINRAVWGPLNRTIISAGE--DAIVRI--WDTETGKLLK---------------------------ESDK----- 186 (305)
Q Consensus 146 ---~~~i~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~---------------------------~~~~----- 186 (305)
......++++|||++++++.. +..+.+ +|..+-+.+. .+..
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 124567899999998888864 356777 7774300000 0000
Q ss_pred --------------------------------------ccCCc---------------------cceEEEEEcCCCCEEE
Q 021925 187 --------------------------------------ETGHK---------------------KTITSLAKAADGSHFL 207 (305)
Q Consensus 187 --------------------------------------~~~~~---------------------~~v~~~~~~~~~~~l~ 207 (305)
..... .....++++|+++.++
T Consensus 200 ~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ly 279 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred CeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEE
Confidence 00000 0001167889988887
Q ss_pred EEeC-C--------CeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEE-ee-CCcEEEEEEee
Q 021925 208 TGSL-D--------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCI-GE-PQTIKFMLLVY 262 (305)
Q Consensus 208 ~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~~~~~~~~~~ 262 (305)
.+.. + +.+.++|+.+++.+..+..+.....++|+|||+.+++ .. .++...++...
T Consensus 280 V~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred EEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 6543 2 3566999999999999986667999999999986544 44 46664444433
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.78 E-value=6.2e-05 Score=67.43 Aligned_cols=233 Identities=8% Similarity=-0.015 Sum_probs=142.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-------CCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
...|.++...++|.+.+ |+.++-+..||..+++....... ....|.++...++|...+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 45688888888876555 44444588899877654432221 135699999988886544 4555 48999987
Q ss_pred CCCeeEEEe--------eCCCceEEEEecCCceEEEeCCcceeeeee--EEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925 83 TGAQLFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIARDPADQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 83 ~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (305)
+++...... ....|.++...+++.+.+....+.+..... ........... . -......|.++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~---~-----~~l~~~~V~~i 362 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPY---K-----NSLSDNVVSCI 362 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTT---S-----SSCSCSSEEEE
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCC---C-----CCCCCCeeEEE
Confidence 665433221 124678888888888777665433222110 00000000000 0 00124568889
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccc-----cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
...++|+ |..|+.++-|..||..+++........ .-....|.++...++++.|..|+.++-+..+|..+++...
T Consensus 363 ~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~ 441 (795)
T 4a2l_A 363 VEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN 441 (795)
T ss_dssp EECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred EECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE
Confidence 8888876 556777778999998876543322110 0124578999998888757777877789999988775433
Q ss_pred EEe-----eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 228 TYV-----TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 228 ~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
... ....|.++...++|++.+. +..+.
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~Gl 473 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGNLWLG-TLSAL 473 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSCEEEE-ESSCE
T ss_pred eecCCCCcCCCeeEEEEECCCCCEEEE-ecCce
Confidence 211 2346889998888875544 44553
No 252
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.77 E-value=1.1e-06 Score=77.96 Aligned_cols=197 Identities=10% Similarity=-0.003 Sum_probs=108.9
Q ss_pred ceEEEEEc-CCCCEEEEeeC-CC----ceEEEEcCCC-eeeE-EecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEE
Q 021925 12 PLTYLKYN-KDGDLLFSCAK-DH----TPTVWFADNG-ERLG-TYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKL 78 (305)
Q Consensus 12 ~v~~~~~~-~~~~~l~s~~~-dg----~v~iw~~~~~-~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~v 78 (305)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886533 23 4999999988 6321 111 123468899999888776665 25888
Q ss_pred EecCCCCe--eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCce--EEEEeccCCCeeEE
Q 021925 79 WNVETGAQ--LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES--VLILKGPQGRINRA 152 (305)
Q Consensus 79 wd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~ 152 (305)
+++.+++. ...+. .......+.|+|+++.++...... ....+.+.++... ..+. ............++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~l~~~d~~~~----~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP--ETAEVHLLDLRKG----NAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS--SCEEEEEEESSSC----TTCCCEEESSCCCTTCCEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC--CCceEEEEECCCC----CCCceeEEeecCCCCceEEE
Confidence 88877642 23333 223456788999999888765322 1222233332211 1112 22222333445555
Q ss_pred EEcCCCCEEEEeeCC----CcEEEEeCCCCcEeee--eccccCCccceEEEEEcCCCCEEEEEeCCCe--EEEEEc
Q 021925 153 VWGPLNRTIISAGED----AIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKS--AKLWDA 220 (305)
Q Consensus 153 ~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~ 220 (305)
.|+..+.+++....+ ..|..+|+.+...... +.. .....+..+.+. .+.++++...+|. |.++|+
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~--~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH--SEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC--CSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC--CCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 554434444444433 3677778765322122 220 112245555554 3345566777776 555565
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=2.7e-06 Score=74.43 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=138.5
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCC----cceEE-EEEcCCCcEEEEEeC------CCcEEEEecCCCCeeEEE
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~----~~v~~-i~~~~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~ 90 (305)
+..++.++.|+.|..+|..+|+.+.++.... ..+.+ ..+. ++ .++++.. +|.|..+|.++++.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567888889999999999999887776421 11111 1111 44 4555443 589999999999999988
Q ss_pred eeC--CC------------------------------ceEEEEecCCceEEEeCCcceeeee------------eEEEEE
Q 021925 91 NFD--SP------------------------------ARSVDFAVGDKLAVITTDPFMELNS------------AIHVKR 126 (305)
Q Consensus 91 ~~~--~~------------------------------v~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 126 (305)
... .+ ...+++.+....++++......... ...+.-
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 631 11 1136778777777666543210000 000111
Q ss_pred eecccCCCCCceEEEEec--cC-------CCeeEEEEcCCCC---EEEEeeCCCcEEEEeCCCCcEeeeecccc------
Q 021925 127 IARDPADQGGESVLILKG--PQ-------GRINRAVWGPLNR---TIISAGEDAIVRIWDTETGKLLKESDKET------ 188 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------ 188 (305)
+. ...++..-.++. |. .+........+++ .++.++.+|.++++|..+++.+.......
T Consensus 275 lD----~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 350 (668)
T 1kv9_A 275 IR----PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (668)
T ss_dssp EC----TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred Ec----CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence 11 123333333332 21 1222222223554 68889999999999999999874432110
Q ss_pred ---CCccc------------------------eEEEEEcCCCCEEEEE--------------------------------
Q 021925 189 ---GHKKT------------------------ITSLAKAADGSHFLTG-------------------------------- 209 (305)
Q Consensus 189 ---~~~~~------------------------v~~~~~~~~~~~l~~~-------------------------------- 209 (305)
....+ -..++++|+...++..
T Consensus 351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (668)
T 1kv9_A 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (668)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence 00000 0125677766655531
Q ss_pred ----eCCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEE
Q 021925 210 ----SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFML 259 (305)
Q Consensus 210 ----~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 259 (305)
..+|.|..||+.+++.+.+.....+.....+...+.++++++.++....+
T Consensus 431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~ 484 (668)
T 1kv9_A 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAY 484 (668)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred CCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhh
Confidence 13488999999999999888876666666677778888888888774433
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.72 E-value=2.6e-06 Score=73.01 Aligned_cols=214 Identities=15% Similarity=0.056 Sum_probs=119.3
Q ss_pred EEEEcCCCCEEEEeeCC----------------CceEEEEcCCCeeeEEecC--CC--------cceEEEEEcCCCc---
Q 021925 15 YLKYNKDGDLLFSCAKD----------------HTPTVWFADNGERLGTYRG--HN--------GAVWCCDVSRDSM--- 65 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~d----------------g~v~iw~~~~~~~~~~~~~--~~--------~~v~~i~~~~~~~--- 65 (305)
.+++.++...++.++.+ +.|..+|..+|+.+..++. |. .++. +....+|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35667766666665532 2589999999998877653 21 2222 22224674
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEEEeeCCCc----------------------------------------eEEEEecCC
Q 021925 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPA----------------------------------------RSVDFAVGD 105 (305)
Q Consensus 66 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v----------------------------------------~~~~~~~~~ 105 (305)
.++.++.+|.+.++|.++++.+........+ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 5778889999999999999998887643311 123444444
Q ss_pred ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeec
Q 021925 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 185 (305)
.++++...... ......... ...+.. .-+.-..+..+|.+. ....+|.|..||+.+++.+.++.
T Consensus 398 g~~yv~~~~~~-----~~~~~~~~~--~~~g~~------~~g~~~~~~~~~~~~---~~~~~g~l~a~D~~tG~~~W~~~ 461 (571)
T 2ad6_A 398 RTLYAGLNHIC-----MDWEPFMLP--YRAGQF------FVGATLAMYPGPNGP---TKKEMGQIRAFDLTTGKAKWTKW 461 (571)
T ss_dssp TEEEEEEECEE-----EEEEECCCC--CCTTSC------CCCEEEEEEECTTST---TSCCCEEEEEECTTTCCEEEEEE
T ss_pred CEEEEEchhcc-----ccccccccc--cccCCc------cccccceeccCcccc---CCCCCCeEEEEECCCCCEEEEec
Confidence 44444321100 000000000 000000 000000111122111 00246899999999999888775
Q ss_pred cccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCee--EEEecCCCCcEEE
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPLLDHVCI 249 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~ 249 (305)
. ...+........+..++.++.||.++.+|.++++.+.++.....+. -+.+..+|+.++.
T Consensus 462 ~----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 462 E----KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp E----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred C----CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 2 1222222222245677789999999999999999999998554442 2345577765443
No 255
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.72 E-value=4.6e-05 Score=62.04 Aligned_cols=207 Identities=10% Similarity=-0.069 Sum_probs=124.4
Q ss_pred cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCeeE
Q 021925 11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
..+..++|++.+..|+ +-...+.|..++.........+.........+++.+.+. +.++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 3467899997555444 445567888898876554443433334457788887544 44555557789998887554333
Q ss_pred EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-C
Q 021925 89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E 166 (305)
Q Consensus 89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 166 (305)
... .-.....+++.|.+..++.+.... ...++..... .................++++|++..|+.+. .
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~d----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMD----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCC-----CCEEEEEeCC----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence 333 235678899998766665553211 1222222211 1111222223344578899998777666554 4
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+.|..+|+........+. ........+++ ..+.++++-...+.|..+|..+++.+..+.
T Consensus 267 ~~~I~~~d~dG~~~~~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTSCSCEEEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCeeEEEEE---CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 6789999987433322222 12345567777 345566666678889999977777666665
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=5e-06 Score=63.36 Aligned_cols=159 Identities=14% Similarity=0.017 Sum_probs=102.3
Q ss_pred CeeeEEecCCCc--ceEEEEEcCCCcEEEEEeC--CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCccee
Q 021925 42 GERLGTYRGHNG--AVWCCDVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117 (305)
Q Consensus 42 ~~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 117 (305)
.+.+.++. |.. ....+.|++++.+.++.+. ++.|.+.|+.+++.+..+..+....
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-------------------- 67 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-------------------- 67 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC--------------------
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc--------------------
Confidence 34556664 553 3689999998755555543 5799999999999887665221100
Q ss_pred eeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCcEeeeeccccCCccceEE
Q 021925 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITS 196 (305)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 196 (305)
...+++. ++.|+.+ -.++.+.++|..+.+.+.++... ... .
T Consensus 68 -------------------------------geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g---~~~--g 109 (266)
T 2iwa_A 68 -------------------------------GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ---MKD--G 109 (266)
T ss_dssp -------------------------------EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC---SSS--C
T ss_pred -------------------------------eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC---CCC--e
Confidence 0123333 3444444 45789999999999999888632 111 1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC---C---CeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R---PVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~---~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
..+++||+.++++..+++|.++|..+.+.+..+... . .++.+.|. +|+..+.....+...+..
T Consensus 110 ~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 110 WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 235567877777777899999999999988888722 1 35678888 664443333344443333
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=8.3e-06 Score=70.03 Aligned_cols=225 Identities=16% Similarity=0.112 Sum_probs=130.1
Q ss_pred EEEeeCCCceEEEEcCCCeeeEEecCCCc----ceEE-EEEcCCCcEEEEEe------CCCcEEEEecCCCCeeEEEeeC
Q 021925 25 LFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWC-CDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFNFD 93 (305)
Q Consensus 25 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~-i~~~~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~ 93 (305)
|+.++.|+.|.-+|..+|+.+.+...... .+.+ ..+. ++ .+++++ .+|.|.-+|.++++.+.++...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 77788899999999999998876653220 1111 1111 44 455554 3799999999999999988744
Q ss_pred CCc---------------------------------------eEEEEecCCceEEEeCCcceee-----------eeeEE
Q 021925 94 SPA---------------------------------------RSVDFAVGDKLAVITTDPFMEL-----------NSAIH 123 (305)
Q Consensus 94 ~~v---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 123 (305)
.+. ..+++.+....++.+....... ...+.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 322 1345666666666654321100 01111
Q ss_pred EEEeecccCCCCCceEEEEeccCC---------CeeEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCcEeeeecccc--
Q 021925 124 VKRIARDPADQGGESVLILKGPQG---------RINRAVWG-PLN---RTIISAGEDAIVRIWDTETGKLLKESDKET-- 188 (305)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 188 (305)
..+. ..++..-.++.... ...-+... .+| +.++.++.+|.++++|.++++.+.......
T Consensus 282 Ald~------~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 355 (599)
T 1w6s_A 282 GRDA------DTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTV 355 (599)
T ss_dssp EEET------TTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred EEeC------CCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCc
Confidence 1111 12333333322111 01111221 456 467778899999999999999887654211
Q ss_pred --------CCccce--------------------------EEEEEcCCCCEEEEE-------------------------
Q 021925 189 --------GHKKTI--------------------------TSLAKAADGSHFLTG------------------------- 209 (305)
Q Consensus 189 --------~~~~~v--------------------------~~~~~~~~~~~l~~~------------------------- 209 (305)
....++ ..++++|+..++++.
T Consensus 356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 435 (599)
T 1w6s_A 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT 435 (599)
T ss_dssp CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence 000011 235566665555432
Q ss_pred --------e------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925 210 --------S------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 210 --------~------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 257 (305)
+ .+|.+..||+.+++.+.+.....+...-.+...+..+++++.++...
T Consensus 436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~ 497 (599)
T 1w6s_A 436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLK 497 (599)
T ss_dssp EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEE
T ss_pred ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEE
Confidence 1 35789999999999998887555444333444566777777777643
No 258
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=5.1e-05 Score=62.71 Aligned_cols=230 Identities=6% Similarity=0.026 Sum_probs=127.1
Q ss_pred ceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeC-CC----cEEEEecCCCC
Q 021925 12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ----TAKLWNVETGA 85 (305)
Q Consensus 12 ~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg----~v~vwd~~~~~ 85 (305)
....++++| ++..|+.+...+.|+.+|..+++...... .......++|++++++|+.+.. ++ .+...+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 467899998 45566666555889999988766544333 4556899999999996666554 22 2333443 332
Q ss_pred ee--EEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-ccCCCeeEEEEcCCCCEE
Q 021925 86 QL--FTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 86 ~~--~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l 161 (305)
.. ..+........+++.| ++.+.++.... ..+...+.. ......... +.......++++|++++|
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~-----~~V~~~~~~------~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNA-----GQVFRYDFT------TQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTT-----TEEEEEETT------TTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCC-----CEEEEEECC------CCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 22 3333445677889999 55555544321 112222211 111111111 122356789999999955
Q ss_pred EEe-eCCCcEEEEeCCC--CcE--eeeeccc---cC---------CccceE-EEEEc--------CCCCEEEEEeCCCeE
Q 021925 162 ISA-GEDAIVRIWDTET--GKL--LKESDKE---TG---------HKKTIT-SLAKA--------ADGSHFLTGSLDKSA 215 (305)
Q Consensus 162 ~~~-~~dg~i~iwd~~~--~~~--~~~~~~~---~~---------~~~~v~-~~~~~--------~~~~~l~~~~~dg~i 215 (305)
+.+ ...+.|..++... ++. +..+... .+ .-.... .++.. ++|.+.++-...++|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 544 4578899987653 221 1111100 00 011223 45553 346666666667889
Q ss_pred EEEEcCCceEEEEEee---------C---------CCeeEEEecCCCCcEEEeeCCcE
Q 021925 216 KLWDARTLELIKTYVT---------E---------RPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 216 ~iwd~~~~~~~~~~~~---------~---------~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
+.++ .+++....... . .....++++|++..|+++...+.
T Consensus 365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 421 (430)
T 3tc9_A 365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421 (430)
T ss_dssp EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence 9988 45644333321 1 13688999996555666654443
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.69 E-value=2.2e-05 Score=62.25 Aligned_cols=199 Identities=10% Similarity=0.062 Sum_probs=117.3
Q ss_pred ceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCeeeEEecC-----CCcceEEEEEcC-CCcEEEEEeC------------
Q 021925 12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSR-DSMTLITGSA------------ 72 (305)
Q Consensus 12 ~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~i~~~~-~~~~l~s~~~------------ 72 (305)
.+..+++.+ +|++++ +...+.|..+|..+++. ..+.. .......+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTEEEE-EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 578899998 665444 44445588888665432 22211 113468899999 8976665432
Q ss_pred -----CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCC
Q 021925 73 -----DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (305)
Q Consensus 73 -----dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (305)
++.|..+|..+++.......-.....++++++++.++++... ...+...++... .... ...+....+
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~----~~~I~~~~~~~~---~~~~-~~~~~~~~g 230 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL----SHQIVKYWLEGP---KKGT-AEVLVKIPN 230 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG----GTEEEEEESSST---TTTC-EEEEEECSS
T ss_pred cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC----CCeEEEEECCCC---cCCc-cceEEeCCC
Confidence 367888898766654333334556789999999866665321 122333332211 0011 111111223
Q ss_pred CeeEEEEcCCCCEEEEeeC----------CCcEEEEeCCCCcEeeeeccccCC-ccceEEEEEcCCCCEEEEEeCCCeEE
Q 021925 148 RINRAVWGPLNRTIISAGE----------DAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAK 216 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~ 216 (305)
...+++.++|++.++... .+.|..+|.. ++.+..+....+. ...++.+++ .+++++++...++.|.
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG 307 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence 778999999986666544 4678889874 7776666532221 234566666 4566666666788899
Q ss_pred EEEcCCc
Q 021925 217 LWDARTL 223 (305)
Q Consensus 217 iwd~~~~ 223 (305)
.+++...
T Consensus 308 ~~~~~~~ 314 (322)
T 2fp8_A 308 ILVYDKK 314 (322)
T ss_dssp EEEC---
T ss_pred EEecccc
Confidence 9987643
No 260
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.69 E-value=4.2e-05 Score=57.95 Aligned_cols=198 Identities=10% Similarity=0.074 Sum_probs=122.0
Q ss_pred EecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEeeC--CCceEEEEecCCceEEEeCCcceeeeeeEE
Q 021925 47 TYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (305)
Q Consensus 47 ~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
.+.+-.+.+..++++|++..| ++...++.|...|.. ++.+..+... .....+++.+++.++++.... ..+.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~-----~~l~ 94 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERD-----YAIY 94 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTT-----TEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCC-----CcEE
Confidence 455666789999999976555 557778899999987 8888887644 467788888888766554332 1122
Q ss_pred EEEeecccCCCCCceEEEE------eccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCC---CCcEeeeecc----ccCC
Q 021925 124 VKRIARDPADQGGESVLIL------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE---TGKLLKESDK----ETGH 190 (305)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~----~~~~ 190 (305)
...+..... ....... .........++++|.++.|+++.+.....+|.++ ....+..... ....
T Consensus 95 ~~~v~~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 95 VISLTPNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp EEEECTTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred EEEcCCCCe---eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 222211100 0011111 1234557899999999888887776555555553 1111111110 0112
Q ss_pred ccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEEEEeeC----------CCeeEEEecCCCCcEEEeeCCcE
Q 021925 191 KKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE----------RPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 191 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
...+.+++++|. +++++.....+.+..+|.. ++.+..+... .....++|.++|++.++ +..+.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~ 245 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR 245 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce
Confidence 345788999995 4556666677889999965 6676666522 25689999999985555 55553
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.68 E-value=0.00017 Score=64.55 Aligned_cols=226 Identities=8% Similarity=0.027 Sum_probs=140.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecC-------CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
..|.++...++|.+.+ |+.+ -|.+|+..+++....... ....|.++...++|. |..|+.++-|..++..+
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGG
T ss_pred CeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCc
Confidence 5699999998887655 4445 588899877664432211 235799999998886 55567767799998765
Q ss_pred CCeeEEEe-------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe---------ccCC
Q 021925 84 GAQLFTFN-------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---------GPQG 147 (305)
Q Consensus 84 ~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 147 (305)
+....... ....|.++...+++.+.+...++.+..... . . .....+. ....
T Consensus 340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~------~------~-~~~~~~~~~~~~~~~~l~~~ 406 (795)
T 4a2l_A 340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNP------I------T-QRFTSYTLQEDESARGIGSN 406 (795)
T ss_dssp GSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECT------T------T-CCEEEECCC------CCSCS
T ss_pred ccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcC------C------C-CcEEEEecCCCCcccCCCCc
Confidence 54322111 134577888777777766655423222111 0 0 0111110 1235
Q ss_pred CeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeecc-ccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE
Q 021925 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (305)
Q Consensus 148 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 226 (305)
.|.++...++++.|..|+.++-|..+|.++++....... .......|.++...++|++.+. +.+ -+..||..+++..
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFT 484 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEE
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEE
Confidence 688999888888577788777899999987764332210 0013457899999888875544 444 4889998876543
Q ss_pred EEEe-------eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 227 KTYV-------TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 227 ~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
.... ....|.++...++|++.+.+ ..+.
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~Gl 519 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EEGL 519 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SSCE
T ss_pred EccccccccccCCceEEEEEECCCCCEEEEe-CCce
Confidence 3221 13568899999998765544 4553
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.66 E-value=5.3e-05 Score=57.38 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=130.3
Q ss_pred ecccccceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~ 83 (305)
+.|-.+.+..++|+|++..|+ +...++.|...|.. ++.++++.- -......|++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 446667899999999766555 46678889999987 887777642 224578899999887767766678899998866
Q ss_pred CCee---EEEee-------CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe-------ccC
Q 021925 84 GAQL---FTFNF-------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-------GPQ 146 (305)
Q Consensus 84 ~~~~---~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 146 (305)
...+ ..... +.....+++.|.+..++++.... ...++...... ......... .+.
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-----p~~i~~~~g~~---~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-----PIEVYKVNGLL---SSNELHISKDKALQRQFTL 172 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-----SEEEEEEESTT---CSSCCEEEECHHHHHTCCS
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-----CceEEEEcccc---cCCceeeecchhhcccccc
Confidence 5532 22221 22347999999887666655422 12233332110 011112121 123
Q ss_pred CCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCC------ccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 147 GRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGH------KKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
..+..++++|....++ .......+..+|.. ++.+..+....+. -...-.|+|.++|+ |...++.+.++.+.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 4578899999775555 45557788999976 5566655433221 13678899999997 55557777777765
Q ss_pred c
Q 021925 220 A 220 (305)
Q Consensus 220 ~ 220 (305)
-
T Consensus 251 ~ 251 (255)
T 3qqz_A 251 P 251 (255)
T ss_dssp C
T ss_pred e
Confidence 4
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.65 E-value=2.6e-05 Score=67.05 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=117.3
Q ss_pred CCEEEEeeC-CCceEEEEc-CCCeeeEEecCCCcc-----------eEEEEEcCCCcE----EEEEeCCCcEEEEecCCC
Q 021925 22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNGA-----------VWCCDVSRDSMT----LITGSADQTAKLWNVETG 84 (305)
Q Consensus 22 ~~~l~s~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-----------v~~i~~~~~~~~----l~s~~~dg~v~vwd~~~~ 84 (305)
+..|+.++. ++.|.-+|. .+|+.+-++...... ...+++.|.+.. ++.++.|+.|.-+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 346666777 889999999 899988777643211 123455443334 888889999999999999
Q ss_pred CeeEEEeeCC-----CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC-------------
Q 021925 85 AQLFTFNFDS-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ------------- 146 (305)
Q Consensus 85 ~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 146 (305)
+.+.+..... .+.+.-...++.+++..........+.+...+. ..++.+-......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~------~TG~~~W~~~~~~~~~~~~~~p~~~~ 215 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDV------KTGEQVWRAYATGPDKDLLLASDFNI 215 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEET------TTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEEC------CCCcEEEEEcCCCCcccccccccccc
Confidence 9998877433 222111112444433332100001111111111 1111111111100
Q ss_pred ------------------------CCe-eEEEEcCCCCEEEEeeCC----------------CcEEEEeCCCCcEeeeec
Q 021925 147 ------------------------GRI-NRAVWGPLNRTIISAGED----------------AIVRIWDTETGKLLKESD 185 (305)
Q Consensus 147 ------------------------~~i-~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~ 185 (305)
..+ ..+++.+....++.+..+ +.|.-+|.++++.+..++
T Consensus 216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 001 135566777777776654 379999999999988776
Q ss_pred cccCCc--------cceEEEEEc-CCC---CEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 186 KETGHK--------KTITSLAKA-ADG---SHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 186 ~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.. .|. .++. +... .+| ..++.++.+|.++++|.++|+.+....
T Consensus 296 ~~-~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 296 KT-PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp SS-TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cC-CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 42 121 2221 2222 467 467788999999999999999987765
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.56 E-value=0.00016 Score=57.92 Aligned_cols=205 Identities=10% Similarity=-0.067 Sum_probs=122.3
Q ss_pred ceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCCCeeEE
Q 021925 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFT 89 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~~ 89 (305)
.+..++|++.+..|+ +-...+.|..++.........+.........+++.+.+ +..++-...+.|.+.++........
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 467889997555554 44456788888887655433333333456788998754 4445555678899999875543333
Q ss_pred Ee-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEEEee-C
Q 021925 90 FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIISAG-E 166 (305)
Q Consensus 90 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~ 166 (305)
.. .-.....+++.|.+..++.+.... ...++..... +.....+ ...-.....++++|++..|+.+. .
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly~td~~~-----~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCcceEEEecCcCeEEEeccCC-----CCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 32 234678899998666555543211 1222222211 1111111 22334578899998777666554 4
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+.|..+|+........+. ........+++ .++..+++-...+.|...+..+++.+..+.
T Consensus 224 ~~~I~~~~~dG~~~~~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCSCEEEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCceEEEEe---CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 6789999987533222222 12345567777 345556666677889999877776666554
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.56 E-value=1.7e-05 Score=59.90 Aligned_cols=146 Identities=8% Similarity=0.091 Sum_probs=96.2
Q ss_pred eeeEEecCCCc--ceEEEEEcCCCcEEEEEeCCC--cEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee
Q 021925 43 ERLGTYRGHNG--AVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL 118 (305)
Q Consensus 43 ~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
+.+.++. |.. -...+.|+ ++.++.+.+.+| .|+++|+++++.+..+..+......
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge------------------- 90 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE------------------- 90 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE-------------------
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee-------------------
Confidence 4455664 554 35889998 677777777766 8999999999988776532211110
Q ss_pred eeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCCCCcEeeeeccccCCccceEEE
Q 021925 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197 (305)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 197 (305)
.++. +++.|... -.++.+.++|..+.+.+.++... ..-..+
T Consensus 91 --------------------------------Git~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~----~eG~gl 132 (262)
T 3nol_A 91 --------------------------------GISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD----GEGWGL 132 (262)
T ss_dssp --------------------------------EEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECS----SCCCCE
T ss_pred --------------------------------EEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECC----CCceEE
Confidence 0111 23334433 35789999999999999998732 111233
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee---CCC---eeEEEecCCCCcEEEee
Q 021925 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERP---VNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~---v~~~~~~~~~~~l~~~~ 251 (305)
+++++.|+.+..+++|.++|..+.+.+..+.. +.+ ++.+.|. +|+ |.++.
T Consensus 133 --t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~ 188 (262)
T 3nol_A 133 --THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANV 188 (262)
T ss_dssp --EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred --ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEE
Confidence 35677777777788999999999999888772 223 4557776 565 44443
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.55 E-value=4.8e-05 Score=65.34 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=130.9
Q ss_pred CCEEEEeeCCCceEEEEcCCCeeeEEecCCCc----ceE-EEEEcC---CCc-EEEEEe------CCCcEEEEecCCCCe
Q 021925 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVW-CCDVSR---DSM-TLITGS------ADQTAKLWNVETGAQ 86 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~-~i~~~~---~~~-~l~s~~------~dg~v~vwd~~~~~~ 86 (305)
+..++.++.|+.|.-+|..+|+.+.+...... .+. ...... +++ .+++++ .+|.|.-+|.++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677788899999999999998877653221 111 111111 233 555654 378999999999999
Q ss_pred eEEEeeCCCc------------------------------------------eEEEEecCCceEEEeCCccee-------
Q 021925 87 LFTFNFDSPA------------------------------------------RSVDFAVGDKLAVITTDPFME------- 117 (305)
Q Consensus 87 ~~~~~~~~~v------------------------------------------~~~~~~~~~~~~~~~~~~~~~------- 117 (305)
+......... ..+++.|....++++......
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 8876532100 124555555555554421100
Q ss_pred ------------eeeeEEEEEeecccCCCCCceEEEEec--cCC----CeeE-EEEc---CCCC---EEEEeeCCCcEEE
Q 021925 118 ------------LNSAIHVKRIARDPADQGGESVLILKG--PQG----RINR-AVWG---PLNR---TIISAGEDAIVRI 172 (305)
Q Consensus 118 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~i~~-~~~~---~~~~---~l~~~~~dg~i~i 172 (305)
....+...+ ...++..-.++. |.. .+.. +... .+|+ .++.++.+|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD------~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVD------PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEEC------TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEE
T ss_pred cCCCcccccCCcccceEEEEe------CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEE
Confidence 001111111 123344433322 211 0111 1122 4564 6788999999999
Q ss_pred EeCCCCcEeeeeccccCC----------ccc--------------------------------eEEEEEcCCCCEEEEEe
Q 021925 173 WDTETGKLLKESDKETGH----------KKT--------------------------------ITSLAKAADGSHFLTGS 210 (305)
Q Consensus 173 wd~~~~~~~~~~~~~~~~----------~~~--------------------------------v~~~~~~~~~~~l~~~~ 210 (305)
+|.++++.+......... ..+ -..++++|+...+++..
T Consensus 351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA 430 (582)
T ss_dssp EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence 999999988665421100 000 01345666555554432
Q ss_pred ---------------------------------CCCeEEEEEcCCceEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEE
Q 021925 211 ---------------------------------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKF 257 (305)
Q Consensus 211 ---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 257 (305)
.+|.|..||+.+++.+.+.....++..-.....+.++++|+.++...
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEE
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEE
Confidence 26889999999999998887655554434444566788888777643
No 267
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.54 E-value=3.4e-05 Score=60.30 Aligned_cols=179 Identities=6% Similarity=0.078 Sum_probs=106.6
Q ss_pred eEecccccceEEEEEcCCCCEEEEee-CCCceEEEEcCCCeeeEE-ecC----CC--cceEEEEE---cCCCcEEEEEe-
Q 021925 4 ILMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGT-YRG----HN--GAVWCCDV---SRDSMTLITGS- 71 (305)
Q Consensus 4 ~~l~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~~~~-~~~----~~--~~v~~i~~---~~~~~~l~s~~- 71 (305)
+.+.+..---.+++|++....+..++ ..++|..|+...+..... +.+ .. ..+..+.| .|+++++++..
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 44555556667899988555555555 789999999875543332 222 11 14689999 68877777543
Q ss_pred ------------CCCcEEEEecC---CCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCC
Q 021925 72 ------------ADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (305)
Q Consensus 72 ------------~dg~v~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (305)
.+..|..+|+. +++.+...........
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~-------------------------------------- 127 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE-------------------------------------- 127 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH--------------------------------------
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc--------------------------------------
Confidence 25678888888 7776655441100000
Q ss_pred ceEEEEec-cCCCeeEEEEcCCCCEEEEeeCC-CcEEEEeCCCCcEeeeec-cc--cCCccceEEEEEcCCCCEEEEEeC
Q 021925 137 ESVLILKG-PQGRINRAVWGPLNRTIISAGED-AIVRIWDTETGKLLKESD-KE--TGHKKTITSLAKAADGSHFLTGSL 211 (305)
Q Consensus 137 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~ 211 (305)
.+...+ .......++..++|+..++++.. +.|...+.... .+..+. .. .......+.|+++|+|+.|++...
T Consensus 128 --~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 128 --FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp --HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred --ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence 000000 01124556667777766666666 66666665432 222111 00 112334678999999998888877
Q ss_pred CCeEEEEEcCCc
Q 021925 212 DKSAKLWDARTL 223 (305)
Q Consensus 212 dg~i~iwd~~~~ 223 (305)
.|.+..+|+++.
T Consensus 205 ~g~L~~fD~~~p 216 (334)
T 2p9w_A 205 PRALTAFDVSKP 216 (334)
T ss_dssp SSSEEEEECSSS
T ss_pred CCeEEEEcCCCC
Confidence 999999998843
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=1.8e-05 Score=70.33 Aligned_cols=193 Identities=6% Similarity=-0.027 Sum_probs=103.5
Q ss_pred ceEEEEEc-CCCcEEEEEeC-CC----cEEEEecCCC-CeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEE
Q 021925 54 AVWCCDVS-RDSMTLITGSA-DQ----TAKLWNVETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (305)
Q Consensus 54 ~v~~i~~~-~~~~~l~s~~~-dg----~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (305)
.+...+|| |||++|+.+.. +| +|+++|+.++ +.+.. ........+.|+|+++.++............+..+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 67889999 99998875433 33 4999999988 63211 111124578899999777665432111111222222
Q ss_pred eecccCCCCCceEEEEe-ccCCCeeEEEEcCCCCEEEEeeC---CCcEEEEeCCCCc-Ee--eeeccccCCccceEEEEE
Q 021925 127 IARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGK-LL--KESDKETGHKKTITSLAK 199 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~~~v~~~~~ 199 (305)
+ ... ..+....+. ........+.|+|||++|+..+. ...|+++|+.++. .. ..+.. .......++.|
T Consensus 254 l--gt~--~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~s~~~ 327 (751)
T 2xe4_A 254 M--GKL--QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--REKGVRYDVQM 327 (751)
T ss_dssp T--TSC--GGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--CCTTCCEEEEE
T ss_pred C--CCC--chhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--CCCCceEEEee
Confidence 2 110 111122332 22334567899999998886553 4578899998752 22 33321 23344555555
Q ss_pred cCCCCEEEEEeCC----CeEEEEEcCCc-eEEE-EEeeCC--CeeEEEecCCCCcEEEe-eCCcE
Q 021925 200 AADGSHFLTGSLD----KSAKLWDARTL-ELIK-TYVTER--PVNAVTMSPLLDHVCIG-EPQTI 255 (305)
Q Consensus 200 ~~~~~~l~~~~~d----g~i~iwd~~~~-~~~~-~~~~~~--~v~~~~~~~~~~~l~~~-~~~~~ 255 (305)
+.++.+++....+ ..|..+|+.++ +... .+.+.. .+..+.+. ++.|+.. ..++.
T Consensus 328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~ 390 (751)
T 2xe4_A 328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGL 390 (751)
T ss_dssp ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTE
T ss_pred eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCE
Confidence 5444444444443 36777787652 2222 233333 34444444 4555544 44444
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=3.3e-05 Score=58.33 Aligned_cols=146 Identities=6% Similarity=-0.016 Sum_probs=96.4
Q ss_pred eeeEEecCCCc--ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeee
Q 021925 43 ERLGTYRGHNG--AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120 (305)
Q Consensus 43 ~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
+.+.++. |.. -...+.|+ ++.+.++.+.+|.|+++|+++++.+..+ .+.....
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fg---------------------- 98 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFA---------------------- 98 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCE----------------------
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcce----------------------
Confidence 4455554 543 35789997 4667788888999999999999887665 3322111
Q ss_pred eEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEc
Q 021925 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200 (305)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 200 (305)
..++... ++..++.-.++.+.+||..+.+.+.++... ..-..++
T Consensus 99 -----------------------------eGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~----~eGwGLt-- 142 (268)
T 3nok_A 99 -----------------------------EGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS----GEGWGLC-- 142 (268)
T ss_dssp -----------------------------EEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS----SCCCCEE--
T ss_pred -----------------------------eEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC----CceeEEe--
Confidence 0122221 223333446899999999999999998732 2223343
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceEEEEEee---CC---CeeEEEecCCCCcEEEee
Q 021925 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ER---PVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 201 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~---~v~~~~~~~~~~~l~~~~ 251 (305)
++++.|+.+..+++|.++|..+.+.+.++.. +. .++.+.|. +|+ |.++.
T Consensus 143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanv 197 (268)
T 3nok_A 143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANI 197 (268)
T ss_dssp EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEE
Confidence 5677887777799999999999999888872 11 34667776 665 44443
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00027 Score=63.13 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=133.9
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe---cCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCee
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 87 (305)
..|.++...++|++. .|+.++-|..++..+++..... ......|.++...+++.+. .|+.++-|..+|.++++..
T Consensus 363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEE
Confidence 568999988888654 4565666888887654332111 1234679999988777654 4666667899998766432
Q ss_pred EEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-----cCCCeeEEEEcCCC
Q 021925 88 FTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-----PQGRINRAVWGPLN 158 (305)
Q Consensus 88 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~ 158 (305)
.+. ....+.++...+++.+.+....+... .+... .+....... ....|.++...++|
T Consensus 441 -~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~-------~~~~~------~~~~~~~~~~~~~~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 441 -IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFV-------IDLAS------KKVIHHYDTSNSQLLENFVRSIAQDSEG 506 (781)
T ss_dssp -ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEE-------EESSS------SSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred -EeccCCCCCCeEEEEEECCCCCEEEEECCceEE-------EeCCC------CeEEecccCcccccccceeEEEEEcCCC
Confidence 232 23567777777777766665422111 11110 011111111 13568889888888
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeecccc-CCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-----eC
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----TE 232 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~ 232 (305)
+.. .|+.++-+..+|..+++.. .+.... -....|.++...++|.+.++ +.+|-+..||..+++. ..+. ..
T Consensus 507 ~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~-~~~~~~~gl~~ 582 (781)
T 3v9f_A 507 RFW-IGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDY-QVFQRKEGLPN 582 (781)
T ss_dssp CEE-EEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCC-EEECGGGTCSC
T ss_pred CEE-EEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcE-EEccccCCCCC
Confidence 754 4555445888998766533 332111 12457899999888875544 4467558898876653 2232 22
Q ss_pred CCeeEEEecCCCCcEEEeeCCcE
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
..|.++...++|++.+ ++..+.
T Consensus 583 ~~i~~i~~d~~g~lW~-~t~~Gl 604 (781)
T 3v9f_A 583 THIRAISEDKNGNIWA-STNTGI 604 (781)
T ss_dssp CCCCEEEECSSSCEEE-ECSSCE
T ss_pred ceEEEEEECCCCCEEE-EcCCce
Confidence 4578888888886544 445554
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.43 E-value=0.00044 Score=56.51 Aligned_cols=211 Identities=12% Similarity=-0.025 Sum_probs=125.3
Q ss_pred cccceEEEEEcCCCCEEEEe-eCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925 9 HERPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~ 82 (305)
....+..++|++.+..|+-+ ...+.|+.+++... .....+.........+++.+ .+++.++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567889999865555544 45678888887642 22333333445678899988 45555555667889999987
Q ss_pred CCCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 83 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
.......+. .-.....+++.|.+..++.+.... ... ++..... ...........-.....++++|++..|
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---~~~--I~~~~~d----G~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAK--IKKGGLN----GVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---SCC--EEEEETT----SCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---CCE--EEEEeCC----CCccEEEEECCCCceEEEEEEeCCCEE
Confidence 665544444 344578999999666555543210 011 2222111 111122223334567889999988777
Q ss_pred EEee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 162 ISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 162 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
+.+. ..+.|..+|+.... .+.+............+++. .+.++.+-...+.|..+|..+++.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 7665 46789999986433 23332111122345566763 34455666667889999988887776665
No 272
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.40 E-value=0.00044 Score=55.45 Aligned_cols=231 Identities=10% Similarity=0.031 Sum_probs=121.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEec---CCCcceEEEEEcCC---CcEEEEEeC-C-----Cc
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR---GHNGAVWCCDVSRD---SMTLITGSA-D-----QT 75 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~---~~~~~v~~i~~~~~---~~~l~s~~~-d-----g~ 75 (305)
-.....++|.|+|+++++ ..+|.|++++ +++. +..+. ........|+|+|+ +..|+.+.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985554 5679999998 4442 22221 12356899999998 445544433 2 57
Q ss_pred EEEEecCCCCe---eEEEe-eC------CCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCCCC----
Q 021925 76 AKLWNVETGAQ---LFTFN-FD------SPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQG---- 135 (305)
Q Consensus 76 v~vwd~~~~~~---~~~~~-~~------~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---- 135 (305)
|..++...+.. ...+. .+ .....++|.|++.+.++..+..... .....+..+........
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 88888764421 11111 12 2346899999997666544321110 01123333322110000
Q ss_pred -----CceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCc--------EEEEeCCCCc------------------Eeee
Q 021925 136 -----GESVLILKGPQGRINRAVWGP-LNRTIISAGEDAI--------VRIWDTETGK------------------LLKE 183 (305)
Q Consensus 136 -----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~iwd~~~~~------------------~~~~ 183 (305)
........++ .....++|+| +++++++-..... |.+. ..+. ++..
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 0111111222 3356789999 5565444332222 3332 2221 1111
Q ss_pred eccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceE------EEEE-eeCCCeeEEEecCCCCcEEEee
Q 021925 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTY-VTERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 184 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~~~~ 251 (305)
+ .+......++| .+|.++++.-..+.|...++..... ...+ .....+..+++.|||.+.++..
T Consensus 264 ~----~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 W----PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp C----TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred c----CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 1 12234567777 4666666666677888887764321 1222 2345789999999998766654
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.40 E-value=0.0004 Score=54.78 Aligned_cols=208 Identities=13% Similarity=-0.031 Sum_probs=121.3
Q ss_pred cceEEEEEcCCCCEEE-EeeCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCCC-cEEEEEeCCCcEEEEecCCC
Q 021925 11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~v~vwd~~~~ 84 (305)
..+.+++|++.+..|+ +-..++.|..++... ......+...-.....+++.+.+ +..++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4467899998655554 445568899998775 22222233222456788998744 44455566789999998755
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEE-eccCCCeeEEEEcCCCCEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 162 (305)
....... .......+++.|.+..++.+.... ...++.... .+.....+ ...-.....++++|+++.|+
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----~~~I~~~~~-----dG~~~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGL-----NGVDIYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEET-----TSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCC-----CCeEEEEcC-----CCCCeEEEEECCCCCceEEEEeccCCEEE
Confidence 4433333 335678999998665555443211 012222211 11222222 22345678899999877776
Q ss_pred Eee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 163 SAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 163 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+. ..+.|..+|+... ..+.+............+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus 180 ~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 555 4679999998743 233332111122345677775 45556666677899999987777666654
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.0014 Score=58.63 Aligned_cols=230 Identities=10% Similarity=-0.061 Sum_probs=135.8
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec--------------CCCcceEEEEEcCCCcEEEEEeCCCc
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------------GHNGAVWCCDVSRDSMTLITGSADQT 75 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~--------------~~~~~v~~i~~~~~~~~l~s~~~dg~ 75 (305)
...|.++...++|.+. .|+..+-|.+++..+++...... .....|.++...++|. |-.|+.++-
T Consensus 257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 3568899888888644 45664668888877654322111 1345799999988885 556676677
Q ss_pred EEEEecCCCCeeEEEe----------eCCCceEEEEecCCceEEEeCCccee-eeeeEEEEEeecccCCCCCceEEEEec
Q 021925 76 AKLWNVETGAQLFTFN----------FDSPARSVDFAVGDKLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKG 144 (305)
Q Consensus 76 v~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (305)
|..++..+........ ....|.++...+++.+.+...+..+. +........ .... ....
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~--~~~~--------~~~~ 404 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI--YNKE--------NREL 404 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE--CC-------------C
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE--EccC--------CCCC
Confidence 9999877654332211 23457788777777766665333222 221111110 0000 0012
Q ss_pred cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
....|.++...++++ |..|+.++-+..+|.++++... +.........|.++...+++.+ ..|+. +-+..+|..+++
T Consensus 405 ~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKK 480 (781)
T ss_dssp CCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSS
T ss_pred CCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCe
Confidence 346788888888776 4456766779999987765433 2211123467899998888764 44555 559999988765
Q ss_pred EEEEEe-e-----CCCeeEEEecCCCCcEEEeeCCcE
Q 021925 225 LIKTYV-T-----ERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 225 ~~~~~~-~-----~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
...... . ...|.++...++|++.+.....+.
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl 517 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGV 517 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCE
T ss_pred EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCE
Confidence 433222 1 356889999998876554433453
No 275
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00011 Score=55.04 Aligned_cols=137 Identities=13% Similarity=0.172 Sum_probs=90.2
Q ss_pred EEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEec
Q 021925 24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV 103 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~ 103 (305)
.......++.+.++|..+.+.+.++...... ..++ ++++.|+.+..++.|.++|.++.+.+.++.....-
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g------- 146 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG------- 146 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT-------
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC-------
Confidence 3344456889999999999999998743322 3444 56767776667899999999999887766521100
Q ss_pred CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeee
Q 021925 104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183 (305)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 183 (305)
. .-..++.+.+. +|+..+..-.+..|.+.|.++++.+..
T Consensus 147 ---------------------------------~-------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 147 ---------------------------------R-------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp ---------------------------------E-------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred ---------------------------------c-------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence 0 00122334443 455444444677999999999998887
Q ss_pred ecccc----------CCccceEEEEEcCCCCEEEEEeC
Q 021925 184 SDKET----------GHKKTITSLAKAADGSHFLTGSL 211 (305)
Q Consensus 184 ~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~ 211 (305)
+.... ......+.++++|+++.|++.+.
T Consensus 186 idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 186 IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65321 12346789999998877766663
No 276
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.30 E-value=0.00065 Score=52.79 Aligned_cols=236 Identities=8% Similarity=-0.015 Sum_probs=149.2
Q ss_pred EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCC-CCeeEEEe---
Q 021925 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFN--- 91 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~--- 91 (305)
.-.+|..+.+|--. ..++.|+|+++.+.++.+. ..+.|.-=.|-.+. .|+-.+. ..|.-|+++. ..+++.+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhccee-cCCccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCceeeecch
Confidence 34688888877765 6789999999999998887 45678888887554 4444443 5799999974 34555555
Q ss_pred --eCCCceEEEEecCCceEEEeCC--cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC---CEEEEe
Q 021925 92 --FDSPARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIISA 164 (305)
Q Consensus 92 --~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~ 164 (305)
....+..-..+++.++++..+- ......+.+.++... .+..+.+++|......+....+. +.++.+
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFA 220 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-------TTEEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-------ccccceeeeeeeeeEEEecCCCCCCceEEEEE
Confidence 2345566666778887665532 112334445554443 24566777887655444433221 233333
Q ss_pred eC---CCcEEEEeCCCC---c------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925 165 GE---DAIVRIWDTETG---K------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T 231 (305)
Q Consensus 165 ~~---dg~i~iwd~~~~---~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 231 (305)
.. .++++|.++... . .+..+........-.-++..++....+..-+.-|.+++||++++.++..-+ .
T Consensus 221 ~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 221 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp EEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC
Confidence 32 268999998532 1 111112222334556688888888889999999999999999999998877 5
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
..+|-..+-+....-++.-...|....+.+.
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 6666555554443334444566665554444
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.24 E-value=0.0014 Score=54.16 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=124.4
Q ss_pred cceEEEEEcCC--CCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC---Cc-EEEEecCCC
Q 021925 11 RPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QT-AKLWNVETG 84 (305)
Q Consensus 11 ~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~-v~vwd~~~~ 84 (305)
.....++|+|+ +..|+.+...+.|+.++..+++...... .......++++++|+++++.... .. +...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34678999984 3345444444899999988777654433 44568999999999944443321 11 333333222
Q ss_pred Ce-eEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCce-EEEEe-ccCCCeeEEEEcCCCCE
Q 021925 85 AQ-LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILK-GPQGRINRAVWGPLNRT 160 (305)
Q Consensus 85 ~~-~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~ 160 (305)
.. ...+........+++.| ++.+.++.... . .++.+... .+.. ..... +.......++++|++++
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~-----~--~V~~~d~~----~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHH-----A--MISSYDPA----TGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTC-----S--EEEEECTT----TCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCC-----C--EEEEEECC----CCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 11 12223345567788888 45544443221 1 12222111 1111 11111 11222346999999995
Q ss_pred EEEe-eCCCcEEEEeCCC--CcEe--eeecc---cc---------CCccceEEEEE---------cCCCCEEEEEeCCCe
Q 021925 161 IISA-GEDAIVRIWDTET--GKLL--KESDK---ET---------GHKKTITSLAK---------AADGSHFLTGSLDKS 214 (305)
Q Consensus 161 l~~~-~~dg~i~iwd~~~--~~~~--~~~~~---~~---------~~~~~v~~~~~---------~~~~~~l~~~~~dg~ 214 (305)
|+.+ ...+.|+.+|... +... ..+.. .. ..-.....+++ .++|.++++-...++
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 5555 4568899988652 3211 11110 00 01134677898 777777777777889
Q ss_pred EEEEEcCCceEEEEEeeC------------------CCeeEEEecCCCCcEEEeeCCc
Q 021925 215 AKLWDARTLELIKTYVTE------------------RPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
|+.++. ++......... .....++++|....|+++...+
T Consensus 367 I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 423 (433)
T 4hw6_A 367 VRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN 423 (433)
T ss_dssp EEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred EEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence 999985 55443322110 1257889994444555554433
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=0.00015 Score=59.91 Aligned_cols=160 Identities=12% Similarity=-0.014 Sum_probs=98.0
Q ss_pred ceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC
Q 021925 54 AVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132 (305)
Q Consensus 54 ~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (305)
....++++| ++..|+.+...+.|+.+|+++++.............++++++++.++++.......... +..+....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~--v~~~~~~g- 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPN--NYILTRES- 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEE--EEEEEGGG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccce--EEEEeCCC-
Confidence 357889998 45566666655889999988766555445556688999999998665554311111111 11111111
Q ss_pred CCCCceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEE-EEEe
Q 021925 133 DQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGS 210 (305)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~ 210 (305)
.......+. .......++++| ++..+++-..++.|..+|...+........ +.......++|+|+|++| ++-.
T Consensus 215 --~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 --GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp --TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SSSSCCEEEEECTTSSEEEEEET
T ss_pred --ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CCCCcceeEEEcCCCCEEEEEEC
Confidence 111111222 234467789999 666666666678999999986654222221 122457789999999955 4555
Q ss_pred CCCeEEEEEcC
Q 021925 211 LDKSAKLWDAR 221 (305)
Q Consensus 211 ~dg~i~iwd~~ 221 (305)
..+.|..++..
T Consensus 290 ~~~~I~~~~~d 300 (430)
T 3tc9_A 290 NQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEeCC
Confidence 67889998865
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.19 E-value=0.00074 Score=55.79 Aligned_cols=205 Identities=11% Similarity=0.069 Sum_probs=107.6
Q ss_pred cccceEEEEEcCCCCEEEEeeCC---Cc-eEEEEcCCCee-eEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecC
Q 021925 9 HERPLTYLKYNKDGDLLFSCAKD---HT-PTVWFADNGER-LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 9 h~~~v~~~~~~~~~~~l~s~~~d---g~-v~iw~~~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~ 82 (305)
.......++++++|+++++.... .. +...+...+.. ...+. .-.....++++| ++.+.++-..++.|..+|..
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 34458899999999944443321 11 22233221111 01121 123456788999 66655565567889999988
Q ss_pred CCCeeEEE-ee--CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec---------------
Q 021925 83 TGAQLFTF-NF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--------------- 144 (305)
Q Consensus 83 ~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 144 (305)
++.....+ .. ......++++|+++.++++.... ..+...+... ..........+.+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~----~~I~~~~~d~--~~~~~~~~~~~ag~~g~~g~~dg~~~~a 332 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK----HCIYRVDYNR--ETGKLAVPYIVCGQHSSPGWVDGMGTGA 332 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT----TEEEEEEBCT--TTCCBCCCEEEEECTTCCCCBCEEGGGS
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC----CEEEEEeCCC--CCcccCcEEEEEecCCCCccCCCcccce
Confidence 77663332 22 22234699999998665554321 1122211110 0000000011111
Q ss_pred cCCCeeEEEE---------cCCCCEEEEeeCCCcEEEEeCCCCcEeeeecccc--------------CCccceEEEEEc-
Q 021925 145 PQGRINRAVW---------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--------------GHKKTITSLAKA- 200 (305)
Q Consensus 145 ~~~~i~~~~~---------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~~- 200 (305)
.-.....+++ .+++++.++-...+.|+.++. ++.......... ..-.....++++
T Consensus 333 ~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 333 RLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp BCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred EEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 1224567888 666776666666788999985 454332221100 011246788888
Q ss_pred CCCCEEEEEeCCCeEEEEEcC
Q 021925 201 ADGSHFLTGSLDKSAKLWDAR 221 (305)
Q Consensus 201 ~~~~~l~~~~~dg~i~iwd~~ 221 (305)
++|.++++-...++|+.++++
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEecC
Confidence 566666665567778777754
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.18 E-value=0.0014 Score=52.00 Aligned_cols=224 Identities=8% Similarity=0.008 Sum_probs=121.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec---CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 86 (305)
...+.++.+++ ++.++ ++.+|.|.. ..+.++.-.... .+.+.+..+.+.+++..++.+ .+|.|.. ....++.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688999986 44444 455664433 223343322222 234567888887777666554 4564422 1223433
Q ss_pred eEEEe--eCCCceEEEEecCCceEEEeCCcceeeeee--EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 87 LFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 87 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
-.... ....+..+.+.+++.+++++..+.+..... ...| +. .-......+..+.+.++++.+
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW-----------~~--~~~~~~~~~~~~~~~~~g~~~- 219 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW-----------EP--HNRTTSRRLHNMGFTPDGRLW- 219 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC-----------EE--EECCSSSCEEEEEECTTSCEE-
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce-----------eE--CCCCCCCccceeEECCCCCEE-
Confidence 33332 344677888888888877765432221110 0001 11 112344567888899988755
Q ss_pred EeeCCCcEEEEeCCCCcEeeeeccc-cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeE
Q 021925 163 SAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNA 237 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~ 237 (305)
.++.+|.+++.+...++.-..+... ......+..+.+.+++..++++. +|.+ .+....++.-..+. ....+.+
T Consensus 220 ~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~ 297 (327)
T 2xbg_A 220 MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYK 297 (327)
T ss_dssp EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCE
T ss_pred EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEE
Confidence 4556788877643323332222211 01234588899998877666554 7766 34445454433333 2356788
Q ss_pred EEecCCCCcEEEeeCCcE
Q 021925 238 VTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~ 255 (305)
+.|.++++ +++++.++.
T Consensus 298 v~~~~~~~-~~~~G~~G~ 314 (327)
T 2xbg_A 298 ILFFSPDQ-GFILGQKGI 314 (327)
T ss_dssp EEEEETTE-EEEECSTTE
T ss_pred EEEECCCc-eEEEcCCce
Confidence 99986665 444555664
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.18 E-value=0.0014 Score=51.74 Aligned_cols=206 Identities=10% Similarity=-0.007 Sum_probs=119.6
Q ss_pred ceEEEEEcCCCC-EEEEeeCCCceEEEEcCCCeee-EEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 12 PLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 12 ~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
.+.+++|++.+. +..+-...+.|..++...+... ..+...-.....+++.+ +++..++-...+.|.+.+++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 456788888544 4445455678888887655321 12222223467788887 44455555567889999987544333
Q ss_pred EE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-C
Q 021925 89 TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E 166 (305)
Q Consensus 89 ~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 166 (305)
.. ........+++.|.+..++.+... ....++..... ...........-...+.++++|+++.|+.+. .
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~-----~~~~I~r~~~d----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMD----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECS-----SSCEEEEEETT----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecC-----CCCEEEEEEcC----CCCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence 33 234567889999865555554321 01122222211 1111112222334568899999777666554 5
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+.|..+|+.... .+.+.. ........+++.. +..+.+-...+.|..++..+++....+.
T Consensus 187 ~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 6889999987433 222221 2234456677753 3455566667899999998887666655
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.18 E-value=0.0014 Score=51.77 Aligned_cols=199 Identities=17% Similarity=0.270 Sum_probs=122.9
Q ss_pred CCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC----Cc---EEEEE-eC--CCcEEEEecC--CCCeeE
Q 021925 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SM---TLITG-SA--DQTAKLWNVE--TGAQLF 88 (305)
Q Consensus 21 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~s~-~~--dg~v~vwd~~--~~~~~~ 88 (305)
....++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++. -. +++|.+|++. ++ .+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence 3456776777889999999 7888888864 56777777662 22 22333 33 5789999773 33 344
Q ss_pred EEe-------eC-CCceEEEE--ecC-Cc-eEEEeCCcceeeeeeEEEEEeecccCC-CCCceEEEEeccCCCeeEEEEc
Q 021925 89 TFN-------FD-SPARSVDF--AVG-DK-LAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 89 ~~~-------~~-~~v~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
.+. .. ..+..+++ ++. +. ++++... .+.+..+.+...... ...+.++.+.. .+.+..+...
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-----~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD 188 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-----EGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD 188 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-----SSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-----CCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence 442 11 45666776 563 43 3444443 234444444322111 12344455544 3578889999
Q ss_pred CCCCEEEEeeCCCcEEEEeCC-----CCcEeeeeccccCCccceEEEEE--cCCCC-EEEEEe-CCCeEEEEEcC-CceE
Q 021925 156 PLNRTIISAGEDAIVRIWDTE-----TGKLLKESDKETGHKKTITSLAK--AADGS-HFLTGS-LDKSAKLWDAR-TLEL 225 (305)
Q Consensus 156 ~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~~ 225 (305)
+....|+.+-++.-|..+|.+ +++.+..+.. ......+..|++ .++++ +|++++ .+++..+||.+ +.+.
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 999999999998777777855 3445544421 122346788887 45555 565555 67899999997 6788
Q ss_pred EEEEe
Q 021925 226 IKTYV 230 (305)
Q Consensus 226 ~~~~~ 230 (305)
+..|.
T Consensus 268 vg~f~ 272 (355)
T 3amr_A 268 VADFR 272 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88876
No 283
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.17 E-value=0.0014 Score=51.39 Aligned_cols=189 Identities=10% Similarity=-0.020 Sum_probs=105.9
Q ss_pred cceEEEEEcCCCCEEEEeeCCC--ceEEEEcCCCeeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCe-
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ- 86 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~- 86 (305)
+.+..++++++|+++++..... .|..++..+++....... .......++..+++..+++-..++.|..+|..+++.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 4578899999999766654333 366667677765433221 222345556566655555555688898998765432
Q ss_pred eEEEee--------C--CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC
Q 021925 87 LFTFNF--------D--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (305)
Q Consensus 87 ~~~~~~--------~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (305)
+..... . .....+ ++++..++++... ...+...+........ ....+.. ......+++++
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~----~~~I~~~~~~~~g~~~---~~~~~~~-~~~P~gi~vd~ 221 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE----KMLLLRIPVDSTDKPG---EPEIFVE-QTNIDDFAFDV 221 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT----TTEEEEEEBCTTSCBC---CCEEEEE-SCCCSSEEEBT
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC----CCEEEEEEeCCCCCCC---ccEEEec-cCCCCCeEECC
Confidence 211110 0 122334 7777666555421 1223333332110000 1111111 13466789999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEee--eeccccCCccceEEEEEc---CCCCEEEEEeCCC
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKA---ADGSHFLTGSLDK 213 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg 213 (305)
+|++.++....+.|.++|.. ++... .+. ......++++|. |+++.|+.++..+
T Consensus 222 dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~---~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAE---QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCCEEEECBTTCCEEEECTT-CCEEEEECGG---GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCC-CCEEEEeecc---cccCCceEEEEecccCCCCEEEEECCCC
Confidence 99887777778899999975 55432 232 223568899998 8877777666543
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.16 E-value=0.0018 Score=52.43 Aligned_cols=236 Identities=9% Similarity=-0.011 Sum_probs=151.0
Q ss_pred EEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe---
Q 021925 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN--- 91 (305)
Q Consensus 16 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~--- 91 (305)
.-.+|..+.+|--. ..++.|+|+++.+.++.+.- .+.|.-=.|-.+. .|+-.+. ..|.-|+++.. .+++.+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT~-taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEcC-CeeEEecccCCCCchhheecch
Confidence 44678777777655 67999999999999888874 4567777776544 4444443 57999999743 4555555
Q ss_pred --eCCCceEEEEecCCceEEEeCC--cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC---CEEEEe
Q 021925 92 --FDSPARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIISA 164 (305)
Q Consensus 92 --~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~ 164 (305)
....|..-..+++.++++..+- ......+.+.++...+ +..+.+++|......+....+. +.++.+
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-------CCEEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-------cccchheeeeeeeEEEecCCCCCCceEEEEE
Confidence 2445666667778887775431 1113345555555432 4566778887666555544222 234444
Q ss_pred eC---CCcEEEEeCCCC---c------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-e
Q 021925 165 GE---DAIVRIWDTETG---K------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T 231 (305)
Q Consensus 165 ~~---dg~i~iwd~~~~---~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 231 (305)
.. .++++|.++... . .+..+........-..++..++....+..-+.-|.+.++|++++.++..-+ .
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 33 278999998543 1 111111222334556788899988899999999999999999999998877 5
Q ss_pred CCCeeEEEecCCCCcEEEeeCCcEEEEEEee
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQTIKFMLLVY 262 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (305)
..+|-..+-+....-++.-...|....+.+.
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 6666555555444445444566666555554
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.15 E-value=0.0016 Score=51.48 Aligned_cols=176 Identities=12% Similarity=0.163 Sum_probs=109.9
Q ss_pred CcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecC----Cce--EEEeCCcceeeeeeEEEEEeecccCCCCCc
Q 021925 64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG----DKL--AVITTDPFMELNSAIHVKRIARDPADQGGE 137 (305)
Q Consensus 64 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (305)
..+++...+.+-|.++|+ +++.+..+.. ..+..+...|+ ++. ++.+++.. .-...+.+..+.... .
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~-~~~n~l~vf~iDp~~-----~ 111 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRS-EGKNTIEIYAIDGKN-----G 111 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECS-TTCCEEEEEEECTTT-----C
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCC-CCCCeEEEEEECCCC-----C
Confidence 356776777888999999 7888888754 66777777773 221 22332211 002234444442111 1
Q ss_pred eEEEEe-------ccCCCeeEEEE--cCC-CC-EEEEeeCCCcEEEEeCC-------CCcEeeeeccccCCccceEEEEE
Q 021925 138 SVLILK-------GPQGRINRAVW--GPL-NR-TIISAGEDAIVRIWDTE-------TGKLLKESDKETGHKKTITSLAK 199 (305)
Q Consensus 138 ~~~~~~-------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~v~~~~~ 199 (305)
.+..+. .....+..++. +|. ++ ++++...+|.+..|++. +.+.++++. ....+-.+..
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~----lgsq~Egcvv 187 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK----MNSQTEGMAA 187 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE----CSSCEEEEEE
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec----CCCCcceEEE
Confidence 122221 11155666777 774 44 67788889999999983 335566665 4567888999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcC-----CceEEEEEee---CCCeeEEEe--cCCCC-cEEEee
Q 021925 200 AADGSHFLTGSLDKSAKLWDAR-----TLELIKTYVT---ERPVNAVTM--SPLLD-HVCIGE 251 (305)
Q Consensus 200 ~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~---~~~v~~~~~--~~~~~-~l~~~~ 251 (305)
.+....|+.+-++.-|..++.+ +++.+..+.. ...+..+++ .++++ +|++++
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 9988899999999777777755 3456655532 246788887 56666 666665
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.13 E-value=7e-05 Score=65.79 Aligned_cols=220 Identities=12% Similarity=-0.042 Sum_probs=121.0
Q ss_pred cceEEEEEcCCCCEEEEe-eCCCceEEEEcCC----CeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCC
Q 021925 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG 84 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~ 84 (305)
..+..++|++.+..|+.+ ...+.|+.+++.. ......+.........|++.+. ++++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 346688999866666655 4467899998875 2222222222233567888764 444455455788999998755
Q ss_pred CeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 85 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
.....+. .......+++.|.+..++.+.... ... ++.+.. ... ...............|+++|+++.|+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~---~~~--I~~~~~---dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT---PAK--IKKGGL---NGV-DIYSLVTENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSS---SCC--EEBCCS---SSC-CCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCC---CCe--EEEEeC---CCC-CeeEEEeCCCCCccEEEEeccCCEEEE
Confidence 4433333 234567888888666555543211 011 111110 000 111111222345678999998665554
Q ss_pred e-eCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-CCCeeEEEec
Q 021925 164 A-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMS 241 (305)
Q Consensus 164 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~ 241 (305)
+ ...+.|..+|+.... .+.+............|++..+ .++++....+.|..+|..+++.+..+.. ...+..+++.
T Consensus 557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 4 456789999986432 2222211111223344555544 4555666678999999988888877752 2234455443
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.12 E-value=0.0019 Score=51.15 Aligned_cols=220 Identities=7% Similarity=0.030 Sum_probs=120.8
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEec----CCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~ 85 (305)
...+.++.+.+++..+++ +.+|.| +...+.++.-.... .....+.++.+.+ +..+ .++.++.|.. ....++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE-ECCCCC
Confidence 457999999887777774 556654 33333343222221 1245789999986 4444 4455664443 223344
Q ss_pred eeEEEe----eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 86 QLFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 86 ~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
.-.... .+..+..+.+.+++..++.+..+.+..... ....-..........+..+.+.|+++++
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D------------gG~tW~~~~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD------------SGKNWQALVQEAIGVMRNLNRSPSGEYV 177 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS------------TTSSEEEEECSCCCCEEEEEECTTSCEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC------------CCCCCEEeecCCCcceEEEEEcCCCcEE
Confidence 333322 223466777777777666654322111100 0111111223345568889999988877
Q ss_pred EEeeCCCcEEEEeC--CCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee-----CCC
Q 021925 162 ISAGEDAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERP 234 (305)
Q Consensus 162 ~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~ 234 (305)
+.+...+..+-.|- .+.+.+.. .....+..+.+.++++.+ .++.+|.+++.+...++.-..+.. ...
T Consensus 178 ~~g~~G~~~~S~d~gG~tW~~~~~-----~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~ 251 (327)
T 2xbg_A 178 AVSSRGSFYSTWEPGQTAWEPHNR-----TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVG 251 (327)
T ss_dssp EEETTSSEEEEECTTCSSCEEEEC-----CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred EEECCCcEEEEeCCCCCceeECCC-----CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence 66644333333442 23333321 245678889999988755 455688888775333443333321 235
Q ss_pred eeEEEecCCCCcEEEeeC
Q 021925 235 VNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~ 252 (305)
+.++++.+++..++++..
T Consensus 252 ~~~v~~~~~~~~~~~g~~ 269 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGA 269 (327)
T ss_dssp EEEEEESSSSCEEEEEST
T ss_pred eEEEEecCCCEEEEEeCC
Confidence 788999988877766553
No 288
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.09 E-value=0.0024 Score=51.15 Aligned_cols=212 Identities=8% Similarity=-0.050 Sum_probs=120.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEe
Q 021925 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
.+|.+..+++ .|+.+ ....|+..++........+.. ...+..++|++.+..|+ +-...+.|..+++..........
T Consensus 36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 4555555543 44433 345677777765554444443 34578999997555554 44557889999988665444333
Q ss_pred -eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CC-C
Q 021925 92 -FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-A 168 (305)
Q Consensus 92 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g 168 (305)
.......+++.+.+..++.+... ...+...+.. .................++++|.+..|+... .. +
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~----~~~I~~~~~d------G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLD------GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETT------SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCCccEEEEecCCCeEEEEcCC----CCeEEEEcCC------CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence 22456788998755544444321 1122222211 1112222333445678999999766555444 44 7
Q ss_pred cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (305)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 240 (305)
.|...++.... ...+.. ..-...+.++++|++..|..+ +..+.|..+|+........+. .......+++
T Consensus 183 ~I~r~~~dG~~-~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 183 RIEASSMDGSG-RRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp EEEEEETTSCS-CEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred EEEEEeCCCCC-cEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence 89999886433 222221 234467899999866666554 456789999987433222222 2334567777
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.05 E-value=0.0059 Score=54.32 Aligned_cols=210 Identities=12% Similarity=-0.044 Sum_probs=120.2
Q ss_pred ccceEEEEEcCCCCE-EEEeeCCCceEEEEcCCC----eeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCC
Q 021925 10 ERPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET 83 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~-l~s~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~ 83 (305)
...+.+|+|++.... +++-...+.|+.+++... .....+.........|++.+.++.| ++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 445678899885444 444455677888887642 2233333334556789998866544 4555678999999875
Q ss_pred CCeeEEEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
......+. .-.....+++.|.+..++.+..+. ...++.... ........+...-.....|++++.+..|+
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-----~~~I~~~~~----dG~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGL----NGVDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEET----TSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCC-----CCeEEEEec----CCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence 55433333 334678999999765555543211 011222211 11122222333345688999998777776
Q ss_pred Eee-CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 163 SAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 163 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+. ..+.|...|+........+. ....-.....|++.. +.++++-...+.|...|..+++.+..+.
T Consensus 574 waD~~~~~I~~~d~dG~~~~~v~~-~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEeCCCCcEEEEecCCCceEEEec-CCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 664 45789999986443322222 111223345666643 3444555567889888887776665554
No 290
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.03 E-value=0.003 Score=50.38 Aligned_cols=232 Identities=11% Similarity=0.070 Sum_probs=126.4
Q ss_pred EecccccceEEEEEcCCCCEEEEee------------CCCceEEEEcCC--Cee-eEEecC-----CCcceEEEEEcC--
Q 021925 5 LMKGHERPLTYLKYNKDGDLLFSCA------------KDHTPTVWFADN--GER-LGTYRG-----HNGAVWCCDVSR-- 62 (305)
Q Consensus 5 ~l~~h~~~v~~~~~~~~~~~l~s~~------------~dg~v~iw~~~~--~~~-~~~~~~-----~~~~v~~i~~~~-- 62 (305)
.+.+-.....++...|+|..+++++ .+|.|.++|..+ ++. ...+.+ ..-....+.+.+
T Consensus 44 ~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 44 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp ECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred EeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 3444233456777888886555542 689999999873 221 112222 123677888765
Q ss_pred CCc-EEEEE-eC--CCcEEEEecCCCCe-eE---EEee--CCCceEEEEecCCceEEEeCCc----ceee------eeeE
Q 021925 63 DSM-TLITG-SA--DQTAKLWNVETGAQ-LF---TFNF--DSPARSVDFAVGDKLAVITTDP----FMEL------NSAI 122 (305)
Q Consensus 63 ~~~-~l~s~-~~--dg~v~vwd~~~~~~-~~---~~~~--~~~v~~~~~~~~~~~~~~~~~~----~~~~------~~~~ 122 (305)
++. +|+.+ .. +.++.+|+++.+.. .. .+.. -.....+.+.+++.+.+....- .... ....
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence 343 44444 22 46788887765422 22 2221 2346789999999877765421 0000 0122
Q ss_pred EEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCC-CcE--eeeeccccCCccceEEEE
Q 021925 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET-GKL--LKESDKETGHKKTITSLA 198 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~ 198 (305)
.++.... . .+..+...-...+.++|+||++.++.+. ..+.|..||+.. ++. .+.+. .....-.++
T Consensus 204 ~vyr~d~------~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~----~~g~PDGi~ 272 (355)
T 3sre_A 204 FVTYYSP------N-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS----FDTLVDNIS 272 (355)
T ss_dssp EEEEECT------T-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----CSSEEEEEE
T ss_pred EEEEEEC------C-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----CCCCCceEE
Confidence 3333321 1 2223334445678899999998877665 578999999864 322 12221 245677889
Q ss_pred EcC-CCCEEEEEeCC-CeEEEEEcC--CceEEEEEee---CCCeeEEEecCCCCcE
Q 021925 199 KAA-DGSHFLTGSLD-KSAKLWDAR--TLELIKTYVT---ERPVNAVTMSPLLDHV 247 (305)
Q Consensus 199 ~~~-~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~---~~~v~~~~~~~~~~~l 247 (305)
+.+ +|++.+++..+ +.|..|+.. .+..+..+.. +.......|..+|+.+
T Consensus 273 vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l 328 (355)
T 3sre_A 273 VDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVL 328 (355)
T ss_dssp ECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSC
T ss_pred EeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEE
Confidence 999 59877766544 344444443 2444444442 2222222344466543
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.00 E-value=0.0042 Score=50.73 Aligned_cols=179 Identities=8% Similarity=-0.039 Sum_probs=107.4
Q ss_pred EEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc
Q 021925 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (305)
Q Consensus 66 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
+|+.+.. ..|+..++..............+..++|.+.+..++.+.... ..+....+... .............
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~----~~I~~~~~~g~--~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRA--HGVSSYDTVISRD 157 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTT----TEEEEEEC--------CCCEEEECSS
T ss_pred eeEEecc-ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCC----CeEEEEEcccC--CCCCcceEEEeCC
Confidence 4554443 679999998776666666667888999998666555553211 11222222110 0001222333334
Q ss_pred CCCeeEEEEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC--CCeEEEEEcCC
Q 021925 146 QGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL--DKSAKLWDART 222 (305)
Q Consensus 146 ~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~ 222 (305)
......+++.+.++.|+ +-...+.|.+.++........+. ........++++|.+..|+.... .+.|...++..
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 45678899998555444 44567899999987554333332 23445789999996666655442 47899888874
Q ss_pred ceEEEEEe-eCCCeeEEEecCCCCcEEEeeCCc
Q 021925 223 LELIKTYV-TERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 223 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
........ .-...+.++++|++..|..+....
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 43333222 224578999999888887775443
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.96 E-value=0.0075 Score=52.24 Aligned_cols=206 Identities=11% Similarity=-0.001 Sum_probs=114.7
Q ss_pred cceEEEEEcCCCCEEEEe-eCCCceEEEEcCCCee-eEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCee
Q 021925 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQL 87 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~ 87 (305)
+.+..++|++.+..|+-+ ...+.|..++++.... ...+...-.....+++.+.+..| ++-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 346688888855555544 3456777777765432 22333333567899999855544 45556789999998765443
Q ss_pred EEE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-
Q 021925 88 FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG- 165 (305)
Q Consensus 88 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 165 (305)
... ..-.....+++.|.+..++.+.-+. ...++..... ...........-.....++++++++.|+.+.
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~-----~~~I~r~~~d----G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~ 190 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGE-----VPKIERAGMD----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 190 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSS-----SCEEEEEETT----SCSCEEEECSSCSSEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCC-----CCEEEEEECC----CCceEEEEeCCCCCCcEEEEEccCCEEEEEeC
Confidence 333 2445678999999755555443110 1122222111 1111222223345678899999877666554
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 229 (305)
..+.|...|+.... .+.+.. +.......+++..+ ..+.+-...+.|...|..+++....+
T Consensus 191 ~~~~I~~~~~dG~~-~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 191 KLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp TTCCEEEESSSCCE-EC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred CCCeEEEecCCCCc-cEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 46789999986433 332221 11222345666655 44455556788999998877654443
No 293
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.94 E-value=0.0039 Score=48.62 Aligned_cols=223 Identities=10% Similarity=-0.005 Sum_probs=104.1
Q ss_pred CCCEEEEee-CC-----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCCC--
Q 021925 21 DGDLLFSCA-KD-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA-- 85 (305)
Q Consensus 21 ~~~~l~s~~-~d-----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~~-- 85 (305)
++..++.|+ .+ ..+.+||..+++-... +.........+. -++..++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455677776 33 3788999887763321 111111112222 256677777754 468899988776
Q ss_pred -eeEEEeeCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 86 -QLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 86 -~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
-...-..+.+ ....+...++.+.+.++.........+...+.... .-..+..+...... .+++. -+++.++.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~-~~~~~-~~~~iyv~ 165 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID----QWSMLGDMQTAREG-AGLVV-ASGVIYCL 165 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT----EEEEEEECSSCCBS-CEEEE-ETTEEEEE
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCC----eEEECCCCCCCccc-ceEEE-ECCEEEEE
Confidence 3222221211 11122223566666554322221222333332111 00111111111111 11222 25667777
Q ss_pred eeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEeeC-
Q 021925 164 AGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTE- 232 (305)
Q Consensus 164 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~- 232 (305)
|+.+ ..+.+||+.+.+-...-. ..........+.+ ++++++.|+.+ ..+.+||+.+.+-...-...
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCC-CCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 7654 468999998765433211 1111122222222 56777788764 46899999876543322211
Q ss_pred CCeeEEEecCCCCcEEEeeCCc
Q 021925 233 RPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 233 ~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
......+..-+++.++.|+.++
T Consensus 243 ~r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 243 PRCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp CCBSCEEEEETTEEEEECCBCS
T ss_pred cccceeEEEECCEEEEEcCcCC
Confidence 1111112223666777776543
No 294
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.92 E-value=0.0057 Score=49.69 Aligned_cols=210 Identities=8% Similarity=-0.073 Sum_probs=119.5
Q ss_pred EEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeEEEe-e
Q 021925 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFN-F 92 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~-~ 92 (305)
|.+..+.+ +|+.+ ....|+..++...+....+. ....+..++|.+.+..| ++-...+.|..+++........+. .
T Consensus 81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred ECCccccc-eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 44444433 44433 34578888877655444444 34457899999755555 454567889999988665444333 2
Q ss_pred CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-CC-CcE
Q 021925 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-AIV 170 (305)
Q Consensus 93 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i 170 (305)
......+++.+.+..++.+.... .. +..... ..................++++|.+..|+... .. +.|
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~----~~--I~~~~~----dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I 227 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGT----SR--IEVANL----DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 227 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTT----TE--EEECBT----TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCC----Ce--EEEEeC----CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEE
Confidence 23567888887555544443211 11 111111 11112222333445678999999777666554 34 789
Q ss_pred EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEe-eCCCeeEEEe
Q 021925 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (305)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 240 (305)
...++.......... ..-...+.++++|++..|+.+ +..+.|..+|+........+. .......+++
T Consensus 228 ~r~~~dG~~~~~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav 296 (386)
T 3v65_B 228 EASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296 (386)
T ss_dssp EEEETTSCSCEEEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred EEEeCCCCCcEEEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence 999886443222222 233457899999866665544 456789999987443322222 2334567777
No 295
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.92 E-value=0.0053 Score=49.21 Aligned_cols=241 Identities=10% Similarity=0.026 Sum_probs=122.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEe-------cCCCcceEEEEEcCC---CcEEEEE-eC------
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRD---SMTLITG-SA------ 72 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~i~~~~~---~~~l~s~-~~------ 72 (305)
-.....|+|.|+|+.|+.+...|.|++++. +++....+ .........++++|+ +..|..+ +.
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 345789999999983444556799999984 34322111 112346789999995 4444443 22
Q ss_pred -CCcEEEEecCCCC----eeEE-Ee-eC------CCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCC
Q 021925 73 -DQTAKLWNVETGA----QLFT-FN-FD------SPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPAD 133 (305)
Q Consensus 73 -dg~v~vwd~~~~~----~~~~-~~-~~------~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 133 (305)
...|..+++.... .... +. .+ .....++|.|++.+.++..+..... .....+..+......
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666665331 1111 11 11 2246799999997776654422100 001123333221110
Q ss_pred CC--------CceEEEEeccCCCeeEEEEcCCCCEEEEeeCC--CcEEEEeCCCCcEe----------------------
Q 021925 134 QG--------GESVLILKGPQGRINRAVWGPLNRTIISAGED--AIVRIWDTETGKLL---------------------- 181 (305)
Q Consensus 134 ~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~---------------------- 181 (305)
.. ......+.........++|+|....|.++... +.=.|.-+..+..-
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 00 00111111122346789999943334443322 11122222221110
Q ss_pred --eeeccc---cCCccceEEEEEcC-------CCCEEEEEeCCCeEEEEEcCCceEEEEEe----eCCCeeEEEecCCCC
Q 021925 182 --KESDKE---TGHKKTITSLAKAA-------DGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLD 245 (305)
Q Consensus 182 --~~~~~~---~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~ 245 (305)
..+... -.+......++|.. +|.++++.-..+.|...++..++...... ....+..+++.|+|.
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 000000 01223567778764 46677776678888888887665443322 234789999999998
Q ss_pred cEEEee
Q 021925 246 HVCIGE 251 (305)
Q Consensus 246 ~l~~~~ 251 (305)
+.++..
T Consensus 336 lyv~td 341 (353)
T 2g8s_A 336 LYVLTD 341 (353)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666544
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.88 E-value=0.0026 Score=49.76 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=63.9
Q ss_pred CCcEEEEeCC---CCcEeeeecccc---C-------CccceEEEEEcCCCCEEEEEeCC-CeEEEEEcCCceEEEEEe-e
Q 021925 167 DAIVRIWDTE---TGKLLKESDKET---G-------HKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYV-T 231 (305)
Q Consensus 167 dg~i~iwd~~---~~~~~~~~~~~~---~-------~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~-~ 231 (305)
+..|..+|+. +++.+....... + .......++..++|+..++++.. +.|...+... +.+..+. .
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeec
Confidence 5779999998 777665443110 0 11358899999999999999988 8888888653 3333332 1
Q ss_pred C------CCeeEEEecCCCCcEEEeeCCcEEEEEE
Q 021925 232 E------RPVNAVTMSPLLDHVCIGEPQTIKFMLL 260 (305)
Q Consensus 232 ~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (305)
. ...+.++++|+|+.|++....+....+.
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 1 1257999999999988886666544443
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.88 E-value=0.011 Score=51.40 Aligned_cols=204 Identities=9% Similarity=-0.018 Sum_probs=121.3
Q ss_pred cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCCCeeE
Q 021925 11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~~~~~ 88 (305)
..+..++|++.+..|+ +-..++.|+.+++........+.........+++.+.+..| ++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 3567899998655555 44557888888876544333343333456788888755444 555557889999987554333
Q ss_pred EE-eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee-C
Q 021925 89 TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E 166 (305)
Q Consensus 89 ~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 166 (305)
.. ..-.....+++.|....++.+.-+. ...++..... +.....+...-.....++++++++.|+.+. .
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~-----~~~I~r~~~d-----G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGG-----KPKIDRAAMD-----GSERTTLVPNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT-----SCSCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCC-----CCEEEEEeCC-----CCceEEEECCCCCcceEEEccccCEEEEEECC
Confidence 33 2345678999998655555443110 1122222211 112222223455678999999877776665 4
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEE
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 229 (305)
.+.|...|+..... ..+. ........+++.. +..+++-...+.|...|..+++....+
T Consensus 187 ~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 187 TNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 67899999875433 2332 1223445777764 444555556788999997776544433
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.83 E-value=0.0076 Score=48.29 Aligned_cols=234 Identities=9% Similarity=0.000 Sum_probs=125.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe-eeEEec---CCCcceEEEEEcCC---CcEEEEEeC----C----C
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYR---GHNGAVWCCDVSRD---SMTLITGSA----D----Q 74 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~l~s~~~----d----g 74 (305)
-.....|+|.|+|++++ +..+|.|++++ .+++ .+..+. ........|+++|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999998555 45669999887 4554 222221 12356899999997 445544332 3 5
Q ss_pred cEEEEecCCC--C-----ee-EEEe--eCCCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCCCCC--
Q 021925 75 TAKLWNVETG--A-----QL-FTFN--FDSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQGG-- 136 (305)
Q Consensus 75 ~v~vwd~~~~--~-----~~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-- 136 (305)
.|..++.... . .+ ..+. .......++|.|++.+.++..+..... .....+..+.........
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777877654 1 11 1122 112356799999998666654321110 011123333221110000
Q ss_pred --ceEEEEeccCCCeeEEEEcC-CCCEEEEeeCCC---cEEEEeCCCCc------------------EeeeeccccCCcc
Q 021925 137 --ESVLILKGPQGRINRAVWGP-LNRTIISAGEDA---IVRIWDTETGK------------------LLKESDKETGHKK 192 (305)
Q Consensus 137 --~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~~------------------~~~~~~~~~~~~~ 192 (305)
.......++ .....++|+| +++++++-.... .|.+.. .+. ++..+. ....
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~---~~~~ 259 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG---SETW 259 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT---TCCC
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC---CCCc
Confidence 011111222 3456799999 566444432211 243332 221 111110 1234
Q ss_pred ceEEEEEc-------CCCCEEEEEeCCCeEEEEEcCCc-eEE--EEEee--CCCeeEEEecCCCCcEEEee
Q 021925 193 TITSLAKA-------ADGSHFLTGSLDKSAKLWDARTL-ELI--KTYVT--ERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 193 ~v~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~--~~~v~~~~~~~~~~~l~~~~ 251 (305)
....++|. .+|.++++.-..+.|...++... +.. ..+.. ...+..+++.|||.+.++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 57788883 46777777667788998888753 332 22221 35789999999997666553
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.012 Score=49.18 Aligned_cols=207 Identities=6% Similarity=-0.045 Sum_probs=109.5
Q ss_pred ceEEEEE-------cCCCCEEEEeeCCC-c------eEEEEcCC-Ceee-----EEecCCCcceEEEEEcCC-CcEEEEE
Q 021925 12 PLTYLKY-------NKDGDLLFSCAKDH-T------PTVWFADN-GERL-----GTYRGHNGAVWCCDVSRD-SMTLITG 70 (305)
Q Consensus 12 ~v~~~~~-------~~~~~~l~s~~~dg-~------v~iw~~~~-~~~~-----~~~~~~~~~v~~i~~~~~-~~~l~s~ 70 (305)
....++| +++|+.|+.+...+ . |.+.+... ++.. ..+... .....++++|+ +.++++-
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS 265 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence 5889999 99999666665543 2 55665333 2221 122211 13357788994 5555566
Q ss_pred eCCCcEEEEecC-------CCCe-----------eEE-Ee--eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec
Q 021925 71 SADQTAKLWNVE-------TGAQ-----------LFT-FN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129 (305)
Q Consensus 71 ~~dg~v~vwd~~-------~~~~-----------~~~-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (305)
..++.|..+|++ ++.. ... +. .......++++|++..++++..... .+...+...
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h----~I~kid~dg 341 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH----YFMRSDYDE 341 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT----EEEEEEEET
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC----EEEEEecCC
Confidence 678889999987 5543 112 22 3345689999999996655543211 111111110
Q ss_pred ccCCCCCceEEEEec---------------cCCCee-EEEEc-------CCCCEEEEeeCCCcEEEEeCCCCcEeeeecc
Q 021925 130 DPADQGGESVLILKG---------------PQGRIN-RAVWG-------PLNRTIISAGEDAIVRIWDTETGKLLKESDK 186 (305)
Q Consensus 130 ~~~~~~~~~~~~~~~---------------~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 186 (305)
.. ........+.+ .-.... .++.. +++.+.++=.....|+.++ .++. +.++..
T Consensus 342 ~~--~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG 417 (496)
T 3kya_A 342 IK--KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAG 417 (496)
T ss_dssp TT--TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEE
T ss_pred Cc--ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEec
Confidence 00 00000001111 011233 34444 4556566656678899998 4453 333321
Q ss_pred c---------------cC------CccceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 187 E---------------TG------HKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 187 ~---------------~~------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
. .+ .-.....++++++ +.++++=....+|+.++++....+.
T Consensus 418 ~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 418 RGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp SCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred ccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 0 00 1134677888886 6666666667788888877655443
No 300
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.70 E-value=0.013 Score=51.27 Aligned_cols=74 Identities=4% Similarity=0.093 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCEEEEeeC-CCceEEEEcCCCeeeEEecCCCc-ceEEEEEcCCCcEEEEEe-CC-----CcEEEEecCC
Q 021925 12 PLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGS-AD-----QTAKLWNVET 83 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~-~d-----g~v~vwd~~~ 83 (305)
...++++.++++.++.|+. +..+.+||..+++-...-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 3445677889999999884 46899999987764332211111 123455667888888888 34 5689999876
Q ss_pred CC
Q 021925 84 GA 85 (305)
Q Consensus 84 ~~ 85 (305)
++
T Consensus 324 ~~ 325 (656)
T 1k3i_A 324 KT 325 (656)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.66 E-value=0.015 Score=47.06 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=95.8
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC----C-CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCC
Q 021925 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFD----S-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (305)
Q Consensus 61 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (305)
+.+|..++.+- ++.||.-++..+..-+.+..+ . .+..+..+|+|.+++..+.. .+.+-.+........
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~------~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN------EIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS------EEEEEECCTTCSCCC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC------eEEEEEecCccccCc
Confidence 34565665543 367888887755555555544 2 68889999999999998753 333333332111111
Q ss_pred ------CceEEEEec------cCCCeeEEEEcCCC---CEEEEeeCCCcEEEEeCCCCc--Eeeeecc------ccCCcc
Q 021925 136 ------GESVLILKG------PQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGK--LLKESDK------ETGHKK 192 (305)
Q Consensus 136 ------~~~~~~~~~------~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--~~~~~~~------~~~~~~ 192 (305)
.-....+.- ...+|..+.|+|-+ ..|++-..|+.|++||+.... +. .+.. ......
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 011222221 35779999999965 589999999999999998622 22 2221 112336
Q ss_pred ceEEEEEcCCCCEEEEEe--CCCeEEEE
Q 021925 193 TITSLAKAADGSHFLTGS--LDKSAKLW 218 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~--~dg~i~iw 218 (305)
.|.+++|.+++-.|...+ ..|.|+-.
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 789999999887777755 78888764
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.63 E-value=0.016 Score=46.24 Aligned_cols=191 Identities=8% Similarity=0.119 Sum_probs=109.5
Q ss_pred ceEEEEEcCCCcEEEEEe------------CCCcEEEEecCCC-CeeEEEeeC--------CCceEEEEec--CCc-eEE
Q 021925 54 AVWCCDVSRDSMTLITGS------------ADQTAKLWNVETG-AQLFTFNFD--------SPARSVDFAV--GDK-LAV 109 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~------------~dg~v~vwd~~~~-~~~~~~~~~--------~~v~~~~~~~--~~~-~~~ 109 (305)
...++...|+|..+++++ .+|.|.++|.++. .....+... -....+.+.+ ++. .++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 456677888876555542 6899999998743 122333322 2566777766 343 344
Q ss_pred EeCCcceeeeeeEEEEEeecccCCCCCceEEEEecc-CCCeeEEEEcCCCCEEEEee-----------------CCCcEE
Q 021925 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG-----------------EDAIVR 171 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~ 171 (305)
++.... ....+.++.+.... .....+..+.+. -...+.+.+.++|++.++.. ..|.|.
T Consensus 131 Vvnh~~--~~s~ielf~~d~~~--~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 131 VVNHPG--SSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEECST--TCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEECCC--CCCeEEEEEEECCC--CEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 443221 12344444443221 111222233322 34578999999998777654 125566
Q ss_pred EEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-ceE--EEEEeeCCCeeEEEecC-CCCc
Q 021925 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART-LEL--IKTYVTERPVNAVTMSP-LLDH 246 (305)
Q Consensus 172 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~v~~~~~~~-~~~~ 246 (305)
.+|.. + +..+. ..-...+.++|+||++.|+.+. ..++|..|++.. ++. ...+......-.+++.+ +|++
T Consensus 207 r~d~~--~-~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 207 YYSPN--D-VRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EECTT--C-CEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred EEECC--e-EEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcE
Confidence 66653 2 22221 2335678999999998876654 578999999863 322 23344455677889999 5887
Q ss_pred EEEeeCCc
Q 021925 247 VCIGEPQT 254 (305)
Q Consensus 247 l~~~~~~~ 254 (305)
.+++..++
T Consensus 281 wva~~~~g 288 (355)
T 3sre_A 281 WVGCHPNG 288 (355)
T ss_dssp EEEEESCH
T ss_pred EEEecCCc
Confidence 77665443
No 303
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.60 E-value=0.0063 Score=56.77 Aligned_cols=214 Identities=9% Similarity=0.006 Sum_probs=127.0
Q ss_pred EEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCC-CeeEEEe----
Q 021925 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFN---- 91 (305)
Q Consensus 17 ~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~---- 91 (305)
-.+|..+.+|--. ..++.|+|+++.+.++.+. ...+|.-=.|..+. .|+-.+. ..|.-|++... .++..+.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHHhcchh
Confidence 3577777666554 6799999999888877776 35567777786544 3443333 57999999642 2322222
Q ss_pred -eCCCceEEEEecCCceEEEeCC--cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcC--CC-CEEEEee
Q 021925 92 -FDSPARSVDFAVGDKLAVITTD--PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LN-RTIISAG 165 (305)
Q Consensus 92 -~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~~l~~~~ 165 (305)
.+..|..-..+++.++++..+- ....+.+.+.++...+ +..+.+.||......+.... .. ..++.+.
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 2456666677778877765432 1123345555555443 23344566665554444331 11 2333222
Q ss_pred C---CCcEEEEeCCCC---cEe------eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe-eC
Q 021925 166 E---DAIVRIWDTETG---KLL------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE 232 (305)
Q Consensus 166 ~---dg~i~iwd~~~~---~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~ 232 (305)
. .++++|.++... .+. .....+.....-..++..++....+...+.-|.+.++|+.++.++..-+ .+
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~ 300 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccC
Confidence 2 378999998543 111 1111111223445677888877888899999999999999998887655 44
Q ss_pred CCeeEEEec
Q 021925 233 RPVNAVTMS 241 (305)
Q Consensus 233 ~~v~~~~~~ 241 (305)
.+|-..+-+
T Consensus 301 ~~iF~~~~~ 309 (1630)
T 1xi4_A 301 ETIFVTAPH 309 (1630)
T ss_pred CceEEeccC
Confidence 444433333
No 304
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.57 E-value=0.018 Score=45.35 Aligned_cols=196 Identities=8% Similarity=-0.073 Sum_probs=112.0
Q ss_pred CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCC----CCeeEEEe-eCCCceEEEEecC
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET----GAQLFTFN-FDSPARSVDFAVG 104 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~ 104 (305)
...|+..|+.+.+....+. ....+.+++|++++..|+ +-..++.|..+++.+ ......+. .-..+..+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 4578888988776555554 345678999998655554 445578899999876 22222222 2245678899875
Q ss_pred CceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-C-CcEEEEeCCCCcEee
Q 021925 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-D-AIVRIWDTETGKLLK 182 (305)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~ 182 (305)
+..++.+... ...+...+.. .................++++|.+..|+.+.. . +.|...++.. +...
T Consensus 88 ~~~ly~~d~~----~~~I~~~~~~------g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~ 156 (316)
T 1ijq_A 88 HSNIYWTDSV----LGTVSVADTK------GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY 156 (316)
T ss_dssp TTEEEEEETT----TTEEEEEETT------SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred CCeEEEEECC----CCEEEEEeCC------CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence 5444443221 1122222211 11122222333456789999997766655544 2 7898888863 3333
Q ss_pred eeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEe-e---CCCeeEEEec
Q 021925 183 ESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV-T---ERPVNAVTMS 241 (305)
Q Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~---~~~v~~~~~~ 241 (305)
.+.. ..-...+.+++++++..|+.+. ..+.|..+|+.... ...+. . ......+++.
T Consensus 157 ~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~ 217 (316)
T 1ijq_A 157 SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF 217 (316)
T ss_dssp EEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE
T ss_pred EEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE
Confidence 3321 1235678999998776665544 56789999987432 23332 1 2335677774
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.026 Score=47.16 Aligned_cols=238 Identities=6% Similarity=0.018 Sum_probs=128.2
Q ss_pred ceEEEEEcC-CCCEEEEe-eCCCceEEEEcCCCeeeEEecCC---CcceEEEEE-------cCCCcEEEEEeCCC-c---
Q 021925 12 PLTYLKYNK-DGDLLFSC-AKDHTPTVWFADNGERLGTYRGH---NGAVWCCDV-------SRDSMTLITGSADQ-T--- 75 (305)
Q Consensus 12 ~v~~~~~~~-~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~l~s~~~dg-~--- 75 (305)
....|+|+| ++..|+.+ ...+.|++.|.+++......... ......++| +++++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34444444 44467888898877665544322 235899999 99998676665543 2
Q ss_pred ---EEEEecCC-CCee-----EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeec------ccCC------C
Q 021925 76 ---AKLWNVET-GAQL-----FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------DPAD------Q 134 (305)
Q Consensus 76 ---v~vwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------~ 134 (305)
|.+.+... ++.. ..+..-.....++++|++..++++... ...+...++.. .... .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~----~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYE----KGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETT----TTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECC----CCEEEEEecccccccccCceeecccccc
Confidence 66665443 1221 233333456688889965555544321 12222222220 0000 0
Q ss_pred -C--CceEEEEeccCCCeeEEEEcCCCCEEEEe-eCCCcEEEEeCC--CCcEe--eeecc---ccCC---------ccce
Q 021925 135 -G--GESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTE--TGKLL--KESDK---ETGH---------KKTI 194 (305)
Q Consensus 135 -~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~~--~~~~~---~~~~---------~~~v 194 (305)
. .+.+.. .+.......++++|++++|+.+ +....|+.+|.. .+... ..+.. ..+. -...
T Consensus 296 ~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 296 NPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp CTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 0 001111 1223456789999999965544 456789986653 33210 11110 0011 1123
Q ss_pred E-EEEEc-------CCCCEEEEEeCCCeEEEEEcCCceEEEEEeeC-------------------------CCeeEEEec
Q 021925 195 T-SLAKA-------ADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------------------RPVNAVTMS 241 (305)
Q Consensus 195 ~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~v~~~~~~ 241 (305)
. .++.. +++.++++-...++|+.++ .++. +.++... .....++++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 44554 4666677767788999998 4553 3333211 125688999
Q ss_pred CCCCcEEEeeCCcEE
Q 021925 242 PLLDHVCIGEPQTIK 256 (305)
Q Consensus 242 ~~~~~l~~~~~~~~~ 256 (305)
++...|+++...+.+
T Consensus 453 ~~~g~lyVaD~~N~r 467 (496)
T 3kya_A 453 DVKEMFYVHDQVGHT 467 (496)
T ss_dssp TTTTEEEEEETTTTE
T ss_pred CCCCEEEEEeCCCCE
Confidence 974456666555444
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.52 E-value=0.02 Score=44.59 Aligned_cols=222 Identities=9% Similarity=-0.020 Sum_probs=99.8
Q ss_pred CCCEEEEeeCC----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCCCeeEE
Q 021925 21 DGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGAQLFT 89 (305)
Q Consensus 21 ~~~~l~s~~~d----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~~~~~~ 89 (305)
++..++.|+.+ ..+..||..+.+-... +......-..+.. ++..++.|+.+ ..+.+||..+.+-...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34566666643 4678899887753322 1111111122222 56677777754 3588889877653322
Q ss_pred EeeCCC--ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCC
Q 021925 90 FNFDSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (305)
Q Consensus 90 ~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 167 (305)
-..+.+ -.+++. -++.+.+.++.........+..++..... -..+..+...... .+++. -+++.++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNE----WFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp CCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTE----EEEECCCSSCCBS-CEEEE-ETTEEEEECCEE
T ss_pred CCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCe----EeecCCCCCcccC-ceEEE-ECCEEEEEeCCC
Confidence 222211 122222 35555555442221112222222221100 0000000011111 12222 245666666542
Q ss_pred -------CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEeeC-CC
Q 021925 168 -------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTE-RP 234 (305)
Q Consensus 168 -------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~-~~ 234 (305)
..+.+||+.+.+-...-... ........+.+ ++++++.|+.+ ..+.+||+.+.+-...-... ..
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 242 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMS-TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCc-cccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence 35889999876543321111 11122222222 56777888764 36899999876543322211 11
Q ss_pred eeEEEecCCCCcEEEeeCCc
Q 021925 235 VNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~~~~ 254 (305)
....+..-+++.++.|+.++
T Consensus 243 ~~~~~~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 243 RNAGVCAVNGLLYVVGGDDG 262 (302)
T ss_dssp BSCEEEEETTEEEEECCBCS
T ss_pred ccCeEEEECCEEEEECCcCC
Confidence 11112223566777776543
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.51 E-value=0.047 Score=48.68 Aligned_cols=208 Identities=8% Similarity=-0.060 Sum_probs=117.6
Q ss_pred CCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEE-EEEeCCCcEEEEecCCC----CeeEEEe-eCCCceEEEEec
Q 021925 30 KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG----AQLFTFN-FDSPARSVDFAV 103 (305)
Q Consensus 30 ~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~v~vwd~~~~----~~~~~~~-~~~~v~~~~~~~ 103 (305)
....|+..++...+....+. ....+..++|.+....| ++-...+.|+.+++... .....+. .-..+..+++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 34567777776655444444 34567899999854444 45555678988888753 2222232 335677899998
Q ss_pred CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC--CCcEEEEeCCCCcEe
Q 021925 104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE--DAIVRIWDTETGKLL 181 (305)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 181 (305)
.+..++.+... ...+...++. .......+.........|+++|.+.+|+.... .+.|...++......
T Consensus 481 ~~~~LY~tD~~----~~~I~v~~ld------G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 481 IHSNIYWTDSV----LGTVSVADTK------GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp TTTEEEEEETT----TTEEEEEETT------SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred cCCcEEEEecC----CCeEEEEeCC------CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 77655555422 1122222221 11222223334456889999998766665543 378999998754433
Q ss_pred eeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEeeC---CCeeEEEecCCCCcEEEeeCC
Q 021925 182 KESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 182 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~ 253 (305)
..+. ..-...+.|++++.+..|+.+. ..+.|...++............ .....|++ .+..|+.+...
T Consensus 551 ~lv~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~ 621 (791)
T 3m0c_C 551 SLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDII 621 (791)
T ss_dssp EEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETT
T ss_pred EEEe---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECC
Confidence 3332 2345788999998766666554 4678999998654333333221 12345555 33455555433
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.50 E-value=0.021 Score=44.59 Aligned_cols=221 Identities=11% Similarity=0.011 Sum_probs=101.5
Q ss_pred CCCEEEEeeCC----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeC----C-----CcEEEEecCCCC
Q 021925 21 DGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSA----D-----QTAKLWNVETGA 85 (305)
Q Consensus 21 ~~~~l~s~~~d----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~----d-----g~v~vwd~~~~~ 85 (305)
++..++.|+.+ ..+.+||..+++-... +......-. ++.. ++..++.|+. + ..+.++|..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 56677777742 3688999887664322 111111112 2222 5667777765 2 468888987764
Q ss_pred eeEEEeeCC--CceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEE
Q 021925 86 QLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (305)
Q Consensus 86 ~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 163 (305)
-...-..+. .-.+++ .-++.+++.++.........+..++.....- ..+..+......-..+.+ +++.++.
T Consensus 102 W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~--~~~iyv~ 174 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVL--NRLLYAV 174 (308)
T ss_dssp EEECCCCSSCCBTCEEE-EETTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred EeECCCCCcCccccEEE-EECCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEE--CCEEEEE
Confidence 322211111 112222 2355665555432222222233333221100 000000111111112222 5666677
Q ss_pred eeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEe--e
Q 021925 164 AGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYV--T 231 (305)
Q Consensus 164 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~ 231 (305)
|+.+ ..+.+||+.+.+-...-. ..........+.+ ++++++.|+.+ ..+.+||+.+.+-...-. .
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 7654 468999998765432211 1111122222333 66777788765 469999998765433211 1
Q ss_pred CCCeeEEEecCCCCcEEEeeCCc
Q 021925 232 ERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 232 ~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
...-.+++. -++++++.|+.++
T Consensus 252 ~r~~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 252 RRSALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp CCBSCEEEE-ETTEEEEECCBCS
T ss_pred CccceEEEE-ECCEEEEEcCcCC
Confidence 111112222 2566777776544
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.41 E-value=0.028 Score=43.71 Aligned_cols=191 Identities=8% Similarity=0.041 Sum_probs=91.8
Q ss_pred CCCEEEEeeCC-----CceEEEEcCCCe---eeE--EecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCCC
Q 021925 21 DGDLLFSCAKD-----HTPTVWFADNGE---RLG--TYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA 85 (305)
Q Consensus 21 ~~~~l~s~~~d-----g~v~iw~~~~~~---~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~~ 85 (305)
+++.++.|+.+ ..+.+||..+++ -.. .+......-..+.. +++.++.|+.+ ..+.++|..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777754 468899988765 322 22211122222222 56677777654 358888987765
Q ss_pred eeEEEeeCCC-ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEec-cCCC-eeEEEEcCCCCEEE
Q 021925 86 QLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGR-INRAVWGPLNRTII 162 (305)
Q Consensus 86 ~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~~~~~~~~l~ 162 (305)
-...-..+.+ ....+..-++++.+.++.........+...+.... .-..+.. .... -.++.. -+++.++
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~-------~W~~~~~~p~~r~~~~~~~-~~~~i~v 211 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG-------HWTNVTPMATKRSGAGVAL-LNDHIYV 211 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT-------EEEEECCCSSCCBSCEEEE-ETTEEEE
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC-------cEEeCCCCCcccccceEEE-ECCEEEE
Confidence 3332222221 11222233566666554322222233333332211 0011110 1111 111222 2466777
Q ss_pred EeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 021925 163 SAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (305)
Q Consensus 163 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 224 (305)
.|+.+ ..+.+||+.+.+-...-. ..........+.+ ++++++.|+.+ ..+.+||.++.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTS-MTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCC-CCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 77654 468999998765433221 1111122222333 66777788765 357888887654
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.33 E-value=0.038 Score=43.51 Aligned_cols=197 Identities=7% Similarity=-0.106 Sum_probs=110.4
Q ss_pred CCceEEEEcCCCe--eeEEecCCCcceEEEEEcCCCc-EEEEEeCCCcEEEEecCCCCee-EEEe-eCCCceEEEEecCC
Q 021925 31 DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQL-FTFN-FDSPARSVDFAVGD 105 (305)
Q Consensus 31 dg~v~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~v~vwd~~~~~~~-~~~~-~~~~v~~~~~~~~~ 105 (305)
...|+..++.... ....+. .......++|.+.+. .+.+-...+.|..+++..+... .... .-.....+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678888887653 222222 223567899998544 4455556788999998766422 2222 23456788888755
Q ss_pred ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee--CCCcEEEEeCCCCcEeee
Q 021925 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKE 183 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~ 183 (305)
..++.+... ...+...+.. .................++++|.+..|+.+. ..+.|...++.... ...
T Consensus 91 g~ly~~d~~----~~~I~~~~~d------G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~ 159 (318)
T 3sov_A 91 EKLYWTDSE----TNRIEVSNLD------GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFI 159 (318)
T ss_dssp TEEEEEETT----TTEEEEEETT------SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred CeEEEEECC----CCEEEEEECC------CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEE
Confidence 444443221 1122222211 1111222224445678899999776666555 35789998886432 222
Q ss_pred eccccCCccceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceEEEEEe-eCCCeeEEEec
Q 021925 184 SDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (305)
Q Consensus 184 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~ 241 (305)
+.. ..-...+.++++|++..|+.+ +..+.|..+|+.......... .......+++.
T Consensus 160 ~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~ 217 (318)
T 3sov_A 160 IIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF 217 (318)
T ss_dssp EEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred EEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence 211 223457899999966666554 457889999987433222222 22334566664
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.22 E-value=0.01 Score=48.05 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCe------------eeEEecC------CCcceEEEEEcC---CCcEEEEE
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------------RLGTYRG------HNGAVWCCDVSR---DSMTLITG 70 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~------------~~~~~~~------~~~~v~~i~~~~---~~~~l~s~ 70 (305)
.|..+..+|+|++||..+ +..|.|-.+..+. ..+.+.- ...+|..+.|+| .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 578899999999999876 5588888877321 1122221 357899999999 45689999
Q ss_pred eCCCcEEEEecCC
Q 021925 71 SADQTAKLWNVET 83 (305)
Q Consensus 71 ~~dg~v~vwd~~~ 83 (305)
..|+.|++||+..
T Consensus 146 tsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 146 KEDDTITMFDILN 158 (452)
T ss_dssp ETTSCEEEEETTC
T ss_pred ecCCEEEEEEccc
Confidence 9999999999986
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.21 E-value=0.055 Score=42.97 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=125.6
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee--eEEec----CCCcceEEEEEcCC---CcEEEEE---eCC
Q 021925 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR----GHNGAVWCCDVSRD---SMTLITG---SAD 73 (305)
Q Consensus 6 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~----~~~~~v~~i~~~~~---~~~l~s~---~~d 73 (305)
+...-.....|+|.|+|+++++--..|.|++++..+++. +..+. ........|+++|+ ...|+.. ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333445678999999999777765589999987655543 22221 23467899999995 3344332 234
Q ss_pred CcEEEEecCCC----------CeeE-EEe--eCCCceEEEEecCCceEEEeCCcceee------eeeEEEEEeecccCCC
Q 021925 74 QTAKLWNVETG----------AQLF-TFN--FDSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQ 134 (305)
Q Consensus 74 g~v~vwd~~~~----------~~~~-~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 134 (305)
+.|.-|.+..+ +.+. .+. .......+.|.|++.+.+...+..... .....++.+.......
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 55666665542 1111 111 122456799999998777654422110 1122333333221100
Q ss_pred C---C-ceEEEEeccCCCeeEEEEcCCCCEEEEee-CCCcEEEEeCCCCcE------------------eeeeccccCCc
Q 021925 135 G---G-ESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL------------------LKESDKETGHK 191 (305)
Q Consensus 135 ~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------------~~~~~~~~~~~ 191 (305)
. . .....-.+| .....++|+|++++.++=. .|+.=.|--+..+.. +..+. .+.
T Consensus 187 ~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~---~~~ 262 (347)
T 3das_A 187 PGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS---TDE 262 (347)
T ss_dssp TTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC---TTT
T ss_pred CCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC---CCC
Confidence 0 0 011112233 3456799999877555432 233222222222211 11110 111
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEE---EEEe--eCCCeeEEEecCCCCcEEEee
Q 021925 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTYV--TERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~--~~~~v~~~~~~~~~~~l~~~~ 251 (305)
.....++|. +|..+...-..+.|....+.....+ ..+- ...++..++..|||.+.++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 355667776 3555555555566766666554321 1121 235789999999998766654
No 313
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.13 E-value=0.0018 Score=57.03 Aligned_cols=172 Identities=9% Similarity=-0.029 Sum_probs=93.3
Q ss_pred CCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEE
Q 021925 73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (305)
Q Consensus 73 dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (305)
.+.|+..++.+.+....+.....+..++|.+.+..++.+.... ..+....+.... ........+.........+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~----~~I~~~~~~g~~--~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRAH--GVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTT----TSBEEEESCCCC--C-CCCCCBCCSCC--CCCE
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCC----CeEEEEecCCCC--CCcceEEEEeCCCCCcceE
Confidence 3578888887766554444556677899998776666654321 122222221100 0001111111112234568
Q ss_pred EEcCCCCEEE-EeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeC-C-CeEEEEEcCCceEEEEE
Q 021925 153 VWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D-KSAKLWDARTLELIKTY 229 (305)
Q Consensus 153 ~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~ 229 (305)
++.+.+..|+ +-...+.|.+.++........+. ........++++|.+..|+.+.. . +.|...++.... ...+
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l 534 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 534 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE
Confidence 8886554444 44457889999987554333222 12244577899986655554442 2 678888775332 2222
Q ss_pred e--eCCCeeEEEecCCCCcEEEeeCCc
Q 021925 230 V--TERPVNAVTMSPLLDHVCIGEPQT 254 (305)
Q Consensus 230 ~--~~~~v~~~~~~~~~~~l~~~~~~~ 254 (305)
. .-...+.|+|+|++..|+.+....
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~ 561 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKL 561 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCC
Confidence 2 223467899999887777765444
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.09 E-value=0.066 Score=41.66 Aligned_cols=219 Identities=9% Similarity=-0.023 Sum_probs=99.6
Q ss_pred CEEEEeeC--CCceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC----CcEEEEecCCCCeeEEEeeCC
Q 021925 23 DLLFSCAK--DHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQLFTFNFDS 94 (305)
Q Consensus 23 ~~l~s~~~--dg~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~ 94 (305)
.+++.|+. ...+.+||..+++-... +......-..+.+ ++..++.|+.+ ..+.++|..+.+-...-..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35555654 35788999887764321 1111112222222 56677777754 568889988775433322222
Q ss_pred C-ceEEEEecCCceEEEeCCc-ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC------
Q 021925 95 P-ARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE------ 166 (305)
Q Consensus 95 ~-v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------ 166 (305)
+ ....+..-++.+.+.++.. .......+..++..... -..+..+...... .+++. -+++.++.|+.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES----WHTKPSMLTQRCS-HGMVE-ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE----EEEECCCSSCCBS-CEEEE-ETTEEEEECCEESCTTT
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc----eEeCCCCcCCcce-eEEEE-ECCEEEEECCCCCCCCc
Confidence 2 1122223356665555432 22222233333322110 0000000000111 11222 24566666653
Q ss_pred ---CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEe--eCCCee
Q 021925 167 ---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYV--TERPVN 236 (305)
Q Consensus 167 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~v~ 236 (305)
-..+.+||+.+.+-...-. .......-..+.. ++++++.|+.+ ..+.+||+.+.+-...-. ....-.
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCP-MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred ccccceEEEeCCCCCeEEECCC-ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 3458899998765332211 1111112222222 56677777754 358899988764332211 111111
Q ss_pred EEEecCCCCcEEEeeCC
Q 021925 237 AVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 237 ~~~~~~~~~~l~~~~~~ 253 (305)
+++.. ++++++.|+.+
T Consensus 242 ~~~~~-~~~i~v~GG~~ 257 (306)
T 3ii7_A 242 KCAAV-GSIVYVLAGFQ 257 (306)
T ss_dssp EEEEE-TTEEEEEECBC
T ss_pred eEEEE-CCEEEEEeCcC
Confidence 22222 56677777644
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.06 E-value=0.0079 Score=44.04 Aligned_cols=66 Identities=8% Similarity=-0.033 Sum_probs=41.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCee------eEEec--CCCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~------~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
..+++++|+|+|.+.+. .+|.++-.+..+.+. -..+- +-. .-.++.|.|+|.+.++ .||.|.-++.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 46889999999986665 577655555433211 11111 111 1478899999977766 5688877764
No 316
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.03 E-value=0.14 Score=44.38 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=111.8
Q ss_pred cceEEEEEcCCCCEEE-EeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCC-CcEEEEEeCCCcEEEEecCCCCeeE
Q 021925 11 RPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLF 88 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~ 88 (305)
..+.+++|++.+..|+ +-...+.|+.++.........+...-.....+++.+. ++..++-+..+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 3467888988544444 4445678888887654433333333345678899874 4455555567889999987554322
Q ss_pred EEe-eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC-
Q 021925 89 TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE- 166 (305)
Q Consensus 89 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 166 (305)
... .-.....+++.|....++.+.-+. ...+...... . ..........-...+.++++++++.|+.+..
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~-----~~~I~r~~~d---G-~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGE-----IPKIERAALD---G-SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSS-----SCEEEEEETT---S-CSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCC-----CCEEEEEccC---C-CccEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence 222 335678999999744444432111 1122222111 1 1112222334456788999997777776654
Q ss_pred CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 021925 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (305)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 224 (305)
.+.|...++.... .+.+.. ........++...+ .+..+-...+.|...|..++.
T Consensus 500 ~~~I~~~~~dG~~-~~~~~~--~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 500 TDKIEVMNTDGTG-RRVLVE--DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTEEEEEESSSCC-CEEEEE--CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CCEEEEEecCCCc-eEEEec--cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 5789999986433 222211 11112234455433 344444456678888877773
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.00 E-value=0.082 Score=41.15 Aligned_cols=191 Identities=8% Similarity=0.030 Sum_probs=91.7
Q ss_pred CCCEEEEeeCC----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC------CcEEEEecCCCCeeE
Q 021925 21 DGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQLF 88 (305)
Q Consensus 21 ~~~~l~s~~~d----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~~~~~~~~ 88 (305)
++..++.|+.+ ..+.+||..+++-... +......-..+.+ +++.++.|+.+ ..+.+||..+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 56677777754 5688889887754322 2211111222222 66677777765 458889988765332
Q ss_pred EEeeCCC-ceEEEEecCCceEEEeCCcceee----eeeEEEEEeecccCCCCCceEEEEec-cCC-CeeEEEEcCCCCEE
Q 021925 89 TFNFDSP-ARSVDFAVGDKLAVITTDPFMEL----NSAIHVKRIARDPADQGGESVLILKG-PQG-RINRAVWGPLNRTI 161 (305)
Q Consensus 89 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l 161 (305)
.-..+.+ ....+..-++++.+.++...... ...+..++.... .-..+.. ... .-.++... +++.+
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-------~W~~~~~~p~~r~~~~~~~~-~~~i~ 204 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE-------TWTELCPMIEARKNHGLVFV-KDKIF 204 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT-------EEEEECCCSSCCBSCEEEEE-TTEEE
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC-------eEEECCCccchhhcceEEEE-CCEEE
Confidence 2222211 11122223555555554221111 222333332211 0111110 011 11122222 56666
Q ss_pred EEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 021925 162 ISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (305)
Q Consensus 162 ~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 224 (305)
+.|+.+ ..+.+||+.+.+-...-. ..........+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSP-MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCC-CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCC-CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 776643 468999998765332211 1111222233333 66778888754 468889988764
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.85 E-value=0.11 Score=40.34 Aligned_cols=194 Identities=12% Similarity=0.108 Sum_probs=89.4
Q ss_pred CCCEEEEeeCC-----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCCC-----cEEEEecCCCCeeE
Q 021925 21 DGDLLFSCAKD-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVETGAQLF 88 (305)
Q Consensus 21 ~~~~l~s~~~d-----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~v~vwd~~~~~~~~ 88 (305)
++..++.|+.+ ..+.+||..+.+-... +......-..+.+ +++.++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 56677777654 3578889887653322 1111112222222 566777777653 47788887665333
Q ss_pred EEeeCCCce-EEEEecCCceEEEeCCcce--eeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee
Q 021925 89 TFNFDSPAR-SVDFAVGDKLAVITTDPFM--ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (305)
Q Consensus 89 ~~~~~~~v~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 165 (305)
.-..+.+.. ..+..-++++.+.++.... .....+..++..... -..+..+...... .+++. -+++.++.|+
T Consensus 139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG 212 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE----WTYIAEMSTRRSG-AGVGV-LNNLLYAVGG 212 (302)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTE----EEEECCCSSCCBS-CEEEE-ETTEEEEECC
T ss_pred cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc----EEECCCCcccccc-ccEEE-ECCEEEEECC
Confidence 222222211 1122235555555432111 112223333322110 0000000011111 12222 2466777776
Q ss_pred CC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCceE
Q 021925 166 ED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLEL 225 (305)
Q Consensus 166 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 225 (305)
.+ ..+.+||+.+.+-...-... ........+.+ ++++++.|+.++ .+.+||+.+.+-
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 54 46899999876543221111 11111222222 667778887654 488888876643
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.80 E-value=0.34 Score=45.31 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=49.8
Q ss_pred ccceEEEEEcCC------CCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEEcC--CCcEEEEEeCCCcEEEE
Q 021925 10 ERPLTYLKYNKD------GDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (305)
Q Consensus 10 ~~~v~~~~~~~~------~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~~--~~~~l~s~~~dg~v~vw 79 (305)
.+.|.|+++.|. ++++|.|.. |++|+|+++++.+.+....- ......++.+.. ...+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 368999986 99999999998766543321 112334444432 34578888899998766
Q ss_pred ecC
Q 021925 80 NVE 82 (305)
Q Consensus 80 d~~ 82 (305)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 553
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.78 E-value=0.072 Score=42.57 Aligned_cols=103 Identities=10% Similarity=0.002 Sum_probs=62.1
Q ss_pred cCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcE--eeeeccccCCccceEEEEEcCC---CCEEEEEeC-C-----C
Q 021925 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD---GSHFLTGSL-D-----K 213 (305)
Q Consensus 145 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g 213 (305)
.-.....++|.|+|++++ +..+|.|++++ .++. +..+............++++|+ +..|..+.. + +
T Consensus 29 ~l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 345677899999998554 45679999998 3432 2222111122456889999998 445544433 2 6
Q ss_pred eEEEEEcCCce-----EE-EEEee-C---CCeeEEEecCCCCcEEEe
Q 021925 214 SAKLWDARTLE-----LI-KTYVT-E---RPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 214 ~i~iwd~~~~~-----~~-~~~~~-~---~~v~~~~~~~~~~~l~~~ 250 (305)
.|..++....+ .+ ..+.. . .....++|.|+|.+.++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 78888876431 11 11221 1 134789999999655543
No 321
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.019 Score=45.45 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=46.7
Q ss_pred CEEEEeeCCCceEEEEcCCCeeeEEecCC-CcceEEEEE--cC-CCcEEEEE-eCCCcEEEEecCCCCeeEEEe
Q 021925 23 DLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDV--SR-DSMTLITG-SADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~i~~--~~-~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~ 91 (305)
..++.++.||.|.-.|.++|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++.++|.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence 47888999999999999999999888743 123222110 01 23333333 689999999998886655554
No 322
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.73 E-value=0.051 Score=43.42 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=28.2
Q ss_pred cEEEEeCCCCc--EeeeeccccCCccceEEEEEcCCCCEEEEEeCCC------eEEEEEcCCceEEEE
Q 021925 169 IVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------SAKLWDARTLELIKT 228 (305)
Q Consensus 169 ~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~ 228 (305)
.+.+||+.+.+ .+..+.. ....-.++. .++++++.|+.++ .|.++++++++.+..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ---GRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSS---CCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCC---CcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 57889988654 3333321 111222222 3677888888653 366667777765544
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.69 E-value=0.23 Score=41.89 Aligned_cols=236 Identities=9% Similarity=0.003 Sum_probs=130.0
Q ss_pred EEEeeCCCceEEEEcCCCeeeEEecCC-------------------------CcceE--EEEEcC---CCcEEEEEeC-C
Q 021925 25 LFSCAKDHTPTVWFADNGERLGTYRGH-------------------------NGAVW--CCDVSR---DSMTLITGSA-D 73 (305)
Q Consensus 25 l~s~~~dg~v~iw~~~~~~~~~~~~~~-------------------------~~~v~--~i~~~~---~~~~l~s~~~-d 73 (305)
+.+|+..|.|+|+-+.+++.++.+.-. .+... .+.+.. ||++|..-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678899999999999999988876310 11111 233322 5677777664 6
Q ss_pred CcEEEEecCCCCeeEEEe--eCCCceEEEEe--cCCceEEEeCCcceeeeeeEE--------EEEeecccCCCCCceEEE
Q 021925 74 QTAKLWNVETGAQLFTFN--FDSPARSVDFA--VGDKLAVITTDPFMELNSAIH--------VKRIARDPADQGGESVLI 141 (305)
Q Consensus 74 g~v~vwd~~~~~~~~~~~--~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 141 (305)
..|..-+++..++-..+. ....+..+.+. |...++++.+.-..-+.+... .+.+.........+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 778888888888766666 45567777776 677777776642221111000 001111111112222111
Q ss_pred EeccCCCeeEEEEcCCCCEEEEeeCCC---------------cEEEEeCCC-------Cc--E-----eeeecccc----
Q 021925 142 LKGPQGRINRAVWGPLNRTIISAGEDA---------------IVRIWDTET-------GK--L-----LKESDKET---- 188 (305)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~-------~~--~-----~~~~~~~~---- 188 (305)
+.- .+....+...+++++.++.+.+. .+.++|+.. ++ . +..+....
T Consensus 233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 111 22333455566777766654332 255555421 10 0 11111000
Q ss_pred --------CCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce-------------EEEEEeeCCCeeEEEecCCCCc
Q 021925 189 --------GHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE-------------LIKTYVTERPVNAVTMSPLLDH 246 (305)
Q Consensus 189 --------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~ 246 (305)
.-......+..+|||++++.++ .+.++.++|+++.. ...+...+......+|.++|..
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCce
Confidence 1123345678899999987655 58899999988531 1334445566788999999944
Q ss_pred EEEeeCCcEEEEEEe
Q 021925 247 VCIGEPQTIKFMLLV 261 (305)
Q Consensus 247 l~~~~~~~~~~~~~~ 261 (305)
..+---|+....|.+
T Consensus 392 YTtlfidSqvvkWni 406 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNM 406 (638)
T ss_dssp EEEETTTTEEEEEEH
T ss_pred EeeeeecceEEEEec
Confidence 444456666444433
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.57 E-value=0.21 Score=39.87 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=42.9
Q ss_pred CCeeEEEEcC-------CCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeE
Q 021925 147 GRINRAVWGP-------LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSA 215 (305)
Q Consensus 147 ~~i~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 215 (305)
..+..+.+.. +++++++....+.|...++..++..............+..+++.|||.++++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3566777764 466666666778888888876544332211112235789999999998665433 34543
No 325
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.44 E-value=0.35 Score=40.86 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=131.4
Q ss_pred CCCEEEEeeC-CCceEEEEcCCCeeeEEecC-CCcceEEEEEc--CCCcEEEEEeC-------CCc-E--------EE--
Q 021925 21 DGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVS--RDSMTLITGSA-------DQT-A--------KL-- 78 (305)
Q Consensus 21 ~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~i~~~--~~~~~l~s~~~-------dg~-v--------~v-- 78 (305)
||++|..-.. +..|-..+++..+.-+.+.- ....+.++.|. |+..+++.++. ||. + .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 6788887653 56777778888776555542 45678888886 67778877764 222 1 12
Q ss_pred -EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceee----------eeeEEEEEeecccC--------CCC----
Q 021925 79 -WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL----------NSAIHVKRIARDPA--------DQG---- 135 (305)
Q Consensus 79 -wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--------~~~---- 135 (305)
.|.++.+....+..+.....+...+++.+.+..+-+.-.. ...+.+.++.+... ...
T Consensus 221 ~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 221 AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 2444455555555566666677777888777764311000 00111111110000 000
Q ss_pred -----------CceEEEEeccCCCeeEEEEcCCCCEEEEeeC-CCcEEEEeCCCC------cE-------eeeeccccCC
Q 021925 136 -----------GESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETG------KL-------LKESDKETGH 190 (305)
Q Consensus 136 -----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~------~~-------~~~~~~~~~~ 190 (305)
......+-.-......+..+|||++++.++. +.++.++|.+.- +. ....+ .
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~ 376 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----L 376 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----C
T ss_pred eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----C
Confidence 1111122222344567889999999887764 889999998742 11 11221 3
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----------eEEEEEeeCCCeeEEE------ecCCCCcEEEee
Q 021925 191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----------ELIKTYVTERPVNAVT------MSPLLDHVCIGE 251 (305)
Q Consensus 191 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~v~~~~------~~~~~~~l~~~~ 251 (305)
.-.....+|.++|.-..+--.|..|.-|++... ..+..+...-.+-.+. -.|+|++|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 445678899999966666668999999998753 3445555333333332 357888887764
No 326
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.41 E-value=0.42 Score=41.50 Aligned_cols=203 Identities=7% Similarity=-0.072 Sum_probs=118.8
Q ss_pred EEEEeeCCCceEEEEcCCCeeeEEec-CCCcceEEEEEcCCCcEEE-EEeCCCcEEEEecCCCCeeEEEeeC-CCceEEE
Q 021925 24 LLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFD-SPARSVD 100 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~ 100 (305)
+|+.+ ....|+..++++.+....+. ..-..+..++|++.+..|+ +-..++.|..+++........+... ..+..++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44443 45688888988655433332 1234678999998655555 4455788999998765544444432 4577899
Q ss_pred EecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEee--CCCcEEEEeCCCC
Q 021925 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETG 178 (305)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~ 178 (305)
+.+.+..++.+.... ..+...++. ...........-.....++++|....|+... ..+.|...++...
T Consensus 87 vD~~~~~LY~tD~~~----~~I~v~~~d------G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 87 VDWLGKNLYWADTGT----NRIEVSKLD------GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS 156 (628)
T ss_dssp EETTTTEEEEEETTT----TEEEEEETT------STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEeCCCEEEEEECCC----CEEEEEecC------CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence 987655555443211 122222221 1111122223445678999999766666554 3578888888644
Q ss_pred cEeeeeccccCCccceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceEEEEEe-eCCCeeEEEecC
Q 021925 179 KLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (305)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 242 (305)
.. ..+. ..-...+.+++++++..|+.+. ..+.|...|+..... ..+. .......+++..
T Consensus 157 ~~-~~l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~ 217 (628)
T 4a0p_A 157 ER-TTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ 217 (628)
T ss_dssp SC-EEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred ce-EEEE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence 33 2222 2345678999999776666554 567899999875433 2222 223345666654
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.31 E-value=0.37 Score=39.95 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=36.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeee--EEecC------CCcceEEEEEcCC
Q 021925 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRG------HNGAVWCCDVSRD 63 (305)
Q Consensus 10 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~------~~~~v~~i~~~~~ 63 (305)
-.....|+|.|+|+++++-...+.|++++..+++.. ..+.. ..+....|+|+|+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 445679999999997776544456888876555432 22321 2456789999995
No 328
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.18 E-value=0.64 Score=41.38 Aligned_cols=218 Identities=12% Similarity=0.081 Sum_probs=122.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEE
Q 021925 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 90 (305)
..|.++.-..+| .|-.|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..+|..+++.. .+
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SF 136 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EE
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Ee
Confidence 458888777776 455566565 788998776543211112335777754 355 45556665 5888898765543 33
Q ss_pred e------eCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEe------ccCCCeeEEEEcCCC
Q 021925 91 N------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK------GPQGRINRAVWGPLN 158 (305)
Q Consensus 91 ~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~ 158 (305)
. ....+.++....++.+.+....+...+.... .....+. .....|.++...+++
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~i~~d~~~ 202 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSN--------------GKFEGIPLPVHSSQSNLFVNSLLEDTTR 202 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTT--------------TEEEEECCCCCTTCSSCCEEEEEEETTT
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCC--------------CceEEecCCCccccccceeEEEEEECCC
Confidence 1 1235667766667776665443211111100 0011110 012347788888777
Q ss_pred CEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe--------
Q 021925 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------- 230 (305)
Q Consensus 159 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 230 (305)
..|..|+. +-+..+|..+++... +.. -....|.++...++|.+.+ |+.+ -+.+++..+++......
T Consensus 203 ~~lWigt~-~Gl~~~~~~~~~~~~-~~~--l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l 276 (758)
T 3ott_A 203 QCVWIGTE-GYLFQYFPSTGQIKQ-TEA--FHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSL 276 (758)
T ss_dssp TEEEEEEE-EEEEEEETTTTEEEE-EEE--EEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSC
T ss_pred CEEEEEEC-CCCeEEcCCCCeEEe-ccC--CCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcC
Confidence 76666664 458889987765332 221 1234688888888876544 4444 58888877654322111
Q ss_pred eCCCeeEEEecCCCCcEEEeeCCcE
Q 021925 231 TERPVNAVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 231 ~~~~v~~~~~~~~~~~l~~~~~~~~ 255 (305)
....|.++....+|.+ -+|+..+.
T Consensus 277 ~~~~i~~i~~D~~g~l-WiGT~~Gl 300 (758)
T 3ott_A 277 TNNIIWNIFADQEHNI-WLGTDYGI 300 (758)
T ss_dssp SCSCEEEEEECTTCCE-EEEESSSE
T ss_pred CcCeEEEEEEcCCCCE-EEEeCCcc
Confidence 1234788888887764 44554553
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.15 E-value=0.33 Score=37.76 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=89.9
Q ss_pred CCCEEEEeeC----C-----CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC-----CcEEEEecCCC
Q 021925 21 DGDLLFSCAK----D-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG 84 (305)
Q Consensus 21 ~~~~l~s~~~----d-----g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~v~vwd~~~~ 84 (305)
+++.++.|+. + ..+.+||..+.+-... +......-..+.+ +++.++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666676665 2 4688889887653321 1111112222222 56677777643 35888888766
Q ss_pred CeeEEEeeCCC--ceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 85 AQLFTFNFDSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 85 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
+-...-..+.+ -.++.. -++.+.+.++.........+..++.....- ..+..+....... +++.. +++.++
T Consensus 148 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~-~~~~~-~~~iyv 220 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGA-GVCVL-HNCIYA 220 (308)
T ss_dssp EEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE-TTEEEE
T ss_pred eEeECCCCCccccceEEEE-ECCEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccc-eEEEE-CCEEEE
Confidence 43222121211 112222 255555555432222223333333221100 0000000111111 22222 566777
Q ss_pred EeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceE
Q 021925 163 SAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLEL 225 (305)
Q Consensus 163 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 225 (305)
.|+.+ ..+.+||+.+.+-...-. ..........+.. ++++++.|+.+ ..+.+||+.+.+-
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EeCCCCCCccceEEEEeCCCCcEEECCC-CCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 77654 569999998765433211 1111112222222 56777787754 3578888876643
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.15 E-value=0.46 Score=39.40 Aligned_cols=111 Identities=8% Similarity=0.112 Sum_probs=63.9
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeecccc---CCccceEEEEEcCC---CCEEEEEe-C
Q 021925 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET---GHKKTITSLAKAAD---GSHFLTGS-L 211 (305)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~-~ 211 (305)
.+...-.....++|.|+|+++++-...+.|++++..+++.. ..+.... ........|+|+|+ +..|..+. .
T Consensus 21 ~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred EEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 33334456789999999997766544457999887655432 2222110 13456789999995 44444333 2
Q ss_pred ------------CCeEEEEEcCCc-------eEEE-EEe--eCCCeeEEEecCCCCcEEEee
Q 021925 212 ------------DKSAKLWDARTL-------ELIK-TYV--TERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 212 ------------dg~i~iwd~~~~-------~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~ 251 (305)
...|.-++.... +.+. .+. .......++|.|||.+.++.+
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234655654321 1111 121 123468999999998666543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.11 E-value=0.35 Score=37.70 Aligned_cols=196 Identities=9% Similarity=0.016 Sum_probs=88.5
Q ss_pred cCCCCEEEEeeC----C-------CceEEEEcCCCeeeEE--ecCCCcceEEEEEcCCCcEEEEEeCC--------CcEE
Q 021925 19 NKDGDLLFSCAK----D-------HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD--------QTAK 77 (305)
Q Consensus 19 ~~~~~~l~s~~~----d-------g~v~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d--------g~v~ 77 (305)
..+++.++.|+. + ..+..||..+++-... +......-..+.+ +++.++.|+.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence 346777777773 1 1267788877654221 1111111112222 56666777632 4588
Q ss_pred EEecCCCCeeEEEeeCCC-ceEEEEecCCceEEEeCC-cceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEc
Q 021925 78 LWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (305)
Q Consensus 78 vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (305)
++|..+.+-...-..+.+ ....+..-++++.+.++. ........+..++.....- ..+..+...... .+++.
T Consensus 121 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~- 194 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSL-FGATV- 194 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEE-
T ss_pred EECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhc-eEEEE-
Confidence 899887642221112221 122223345555555543 2222223333333321100 000000001111 11222
Q ss_pred CCCCEEEEeeCCC-----cEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC--------------eEE
Q 021925 156 PLNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--------------SAK 216 (305)
Q Consensus 156 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~ 216 (305)
-+++.++.|+.++ .+.+||+.+.+-...-. ..........+.+ ++++++.|+.++ .+.
T Consensus 195 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~ 271 (315)
T 4asc_A 195 HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIW 271 (315)
T ss_dssp ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEE
Confidence 2566777777544 58899998765433221 1111122222222 567777777642 366
Q ss_pred EEEcCCceE
Q 021925 217 LWDARTLEL 225 (305)
Q Consensus 217 iwd~~~~~~ 225 (305)
+||+++.+-
T Consensus 272 ~yd~~~~~W 280 (315)
T 4asc_A 272 RYNEEEKKW 280 (315)
T ss_dssp EEETTTTEE
T ss_pred EecCCCChh
Confidence 777776543
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.09 E-value=0.4 Score=38.26 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=99.5
Q ss_pred cceEEEEEcCC---CCEEEEeeC----C----CceEEEEcCCC-------eee-EEecC-CCcceEEEEEcCCCcEEEEE
Q 021925 11 RPLTYLKYNKD---GDLLFSCAK----D----HTPTVWFADNG-------ERL-GTYRG-HNGAVWCCDVSRDSMTLITG 70 (305)
Q Consensus 11 ~~v~~~~~~~~---~~~l~s~~~----d----g~v~iw~~~~~-------~~~-~~~~~-~~~~v~~i~~~~~~~~l~s~ 70 (305)
.....|+++|+ +..|+.+.. + ..|..++.... +.+ ..+.. .......++|.|||.+.++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 45789999997 444444332 3 56777776543 111 11221 11124679999999876664
Q ss_pred eCC-------------CcEEEEecCCC---------CeeEEEeeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEe
Q 021925 71 SAD-------------QTAKLWNVETG---------AQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRI 127 (305)
Q Consensus 71 ~~d-------------g~v~vwd~~~~---------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 127 (305)
+.. |.|.-.+.... ..+... .-.....++|.| .+.+.++-..... ... +..+
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g~~~--~de--i~~i 227 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-GHRNPQGIDWHRASGVMVATEHGPVG--HDE--VNII 227 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-CCSCCCEEEECTTTCCEEEEECCSSS--CCE--EEEE
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-ccCCcceEEEeCCCCCEEEEecCCCC--CcE--EEEe
Confidence 432 34554554321 112111 223466899999 5665555433211 011 1111
Q ss_pred ecccC------------CCCCceEEEEeccCCCeeEEEEc-------CCCCEEEEeeCCCcEEEEeCCCC-cEe--eeec
Q 021925 128 ARDPA------------DQGGESVLILKGPQGRINRAVWG-------PLNRTIISAGEDAIVRIWDTETG-KLL--KESD 185 (305)
Q Consensus 128 ~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~ 185 (305)
..... .....+...+.........+++. .+++++++.-..+.|...++... +.. ..+.
T Consensus 228 ~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 307 (354)
T 3a9g_A 228 LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF 307 (354)
T ss_dssp CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC
T ss_pred cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec
Confidence 11000 00012222331223456778873 45666666666778888888753 222 1221
Q ss_pred cccCCccceEEEEEcCCCCEEEEEe
Q 021925 186 KETGHKKTITSLAKAADGSHFLTGS 210 (305)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~l~~~~ 210 (305)
.+....+..+++.|||.+.++..
T Consensus 308 --~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 308 --KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp --TTTSCCEEEEEECTTSCEEEEEC
T ss_pred --cCCCCCeeEEEECCCCcEEEEEe
Confidence 12245788999999997666554
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.08 E-value=0.69 Score=40.76 Aligned_cols=224 Identities=10% Similarity=0.035 Sum_probs=105.2
Q ss_pred CCCCEEEEeeCC----CceEEEEcCCCeeeEEe-c-------CCCcceEEEEEcCCCcEEEEEeCC------CcEEEEec
Q 021925 20 KDGDLLFSCAKD----HTPTVWFADNGERLGTY-R-------GHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNV 81 (305)
Q Consensus 20 ~~~~~l~s~~~d----g~v~iw~~~~~~~~~~~-~-------~~~~~v~~i~~~~~~~~l~s~~~d------g~v~vwd~ 81 (305)
.++..++.|+.+ ..+.+||..+++....- . .....-..+.+..+++.++.||.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888898877543322 1 111122233332267777777754 34788888
Q ss_pred CCCCeeEEEeeC--CCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEE---EeccCCCeeEEEEcC
Q 021925 82 ETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI---LKGPQGRINRAVWGP 156 (305)
Q Consensus 82 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~ 156 (305)
.+.+-...-..+ ..-.+++...++.+.+.++..... .+..++.....- ..+.. ..........+.+..
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEET
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCce----EEccCCCCCCCcccceeEEEEeC
Confidence 775322211111 122233333466666665532211 233333221100 00000 001111223355555
Q ss_pred C-CCEEEEeeC--C-----CcEEEEeCCCCcE-----eeeecc-ccCCccceEEEEEcCCCCEEEEEeCC--------Ce
Q 021925 157 L-NRTIISAGE--D-----AIVRIWDTETGKL-----LKESDK-ETGHKKTITSLAKAADGSHFLTGSLD--------KS 214 (305)
Q Consensus 157 ~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~ 214 (305)
+ ++.++.|+. + ..+.+||+.+.+. -..+.. .......... +...++++++.|+.+ ..
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPRKLLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETTEEEEECCBCSSCCCCTTTS
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCCEEEEECCccCCCCCCCCCe
Confidence 5 566777765 2 4589999987761 111111 0011111222 233336777777743 45
Q ss_pred EEEEEcCCceEEEEEeeCCCe----------eEEEecCCCCcEEEeeC
Q 021925 215 AKLWDARTLELIKTYVTERPV----------NAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~ 252 (305)
+.+||+.+.+-. ........ .++...+++++++.||+
T Consensus 628 v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 628 IISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred EEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 999999877554 22211111 33444566677777764
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.06 E-value=0.38 Score=37.71 Aligned_cols=218 Identities=10% Similarity=0.080 Sum_probs=135.6
Q ss_pred CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEE
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 110 (305)
+..|.|.|+.++....+-.-.. -+.-.+|..+.||--. ..++.++|+++.+.+..+..+..|.--.|.....+.++
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A---dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lV 123 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 123 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEE
T ss_pred CCEEEEEECCCCCCcccccccc---ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEE
Confidence 3478888988765443322111 1223588887777655 57899999999999999999999999999888888777
Q ss_pred eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC----CCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCc
Q 021925 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ----GRINRAVWGPLNRTIISAG-------EDAIVRIWDTETGK 179 (305)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~ 179 (305)
+.. .+.-|.+.. ...+...+..|. ..|..-..+++.++++..+ ..|.+.+|..+.+
T Consensus 124 T~t-------aVyHWs~~~-----~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~- 190 (365)
T 2xzh_A 124 TDN-------AVYHWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK- 190 (365)
T ss_dssp ESS-------EEEEEESST-----TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-
T ss_pred cCC-------cEEEEcccC-----CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-
Confidence 754 455555432 335666666553 4566777888888877544 2378899998744
Q ss_pred EeeeeccccCCccceEEEEEcCC---CCEEEEEeC---CCeEEEEEcCCc---eE-----EEEEe-----eCCCeeEEEe
Q 021925 180 LLKESDKETGHKKTITSLAKAAD---GSHFLTGSL---DKSAKLWDARTL---EL-----IKTYV-----TERPVNAVTM 240 (305)
Q Consensus 180 ~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---dg~i~iwd~~~~---~~-----~~~~~-----~~~~v~~~~~ 240 (305)
..+.++ +|......+....+ ...++.+.. .+++.+-++... .+ ...+. ...-..++..
T Consensus 191 ~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 191 VSQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp EEEEEC---CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred ccceee---eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 344555 67665544433221 123333332 258888887432 11 11111 1223457777
Q ss_pred cCCCCcEEEeeCCcEEEEEEeehhhhhhhhhhh
Q 021925 241 SPLLDHVCIGEPQTIKFMLLVYLFVLFLDILFY 273 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
++....+..-+..|. ++++++.....++
T Consensus 268 s~kygviyviTK~G~-----ihlyDleTgt~i~ 295 (365)
T 2xzh_A 268 SEKHDVVFLITKYGY-----IHLYDLETGTCIY 295 (365)
T ss_dssp ETTTTEEEEEETTSE-----EEEEETTTCCEEE
T ss_pred cccCCEEEEEeCCcE-----EEEEEcccCcEEE
Confidence 887777877777787 5555555444443
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.98 E-value=0.41 Score=37.35 Aligned_cols=217 Identities=9% Similarity=0.025 Sum_probs=98.2
Q ss_pred EEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeC----C-------CcEEEEecCCCCeeEEEe
Q 021925 24 LLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSA----D-------QTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~----d-------g~v~vwd~~~~~~~~~~~ 91 (305)
+++.|+ ..+.+||..+++-.. .+..............+++.++.|+. + ..+.+||..+.+-...-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344455 578999998877432 22211122223333446777777773 1 126778887665322111
Q ss_pred eCCCc--eEEEEecCCceEEEeCCc---ceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeC
Q 021925 92 FDSPA--RSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (305)
Q Consensus 92 ~~~~v--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 166 (305)
.+.+- .+++. -++.+.+.++.. .......+...+.....- +.+..+...... .+++ .-+++.++.|+.
T Consensus 85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~ 157 (315)
T 4asc_A 85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYG-HTVL-SHMDLVYVIGGK 157 (315)
T ss_dssp BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEE-EETTEEEEECCB
T ss_pred CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccc-eeEE-EECCEEEEEeCC
Confidence 22211 12222 255555555421 112222333333321100 000000011111 1122 234566677765
Q ss_pred -C-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCceEEEEEe--eCC
Q 021925 167 -D-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLELIKTYV--TER 233 (305)
Q Consensus 167 -d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~ 233 (305)
+ ..+.+||+.+.+-...-. .......-..+.+ ++++++.|+.++ .+.+||+.+.+-...-. ...
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 2 468999998765332211 1111112222222 667778887654 58889988764433222 111
Q ss_pred CeeEEEecCCCCcEEEeeCC
Q 021925 234 PVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~ 253 (305)
.-.+++ .-++++++.|+.+
T Consensus 235 ~~~~~~-~~~~~l~v~GG~~ 253 (315)
T 4asc_A 235 SSLSLV-SLVGTLYAIGGFA 253 (315)
T ss_dssp BSCEEE-EETTEEEEEEEEE
T ss_pred cceeEE-EECCEEEEECCcc
Confidence 112222 2356677777653
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.88 E-value=0.5 Score=37.55 Aligned_cols=113 Identities=10% Similarity=-0.040 Sum_probs=68.0
Q ss_pred EEEEeccCCCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe--eeec-cccCCccceEEEEEcCC----CCEEEEE--
Q 021925 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESD-KETGHKKTITSLAKAAD----GSHFLTG-- 209 (305)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~~~~v~~~~~~~~----~~~l~~~-- 209 (305)
+..+...-.....++|.|+|+++++--..|.|++++...++.. ..+. ...........|+++|+ +.+.++-
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3444455667889999999997776655899999987655432 2221 11123567899999995 4333332
Q ss_pred eCCCeEEEEEcCCc----------eEEE-EEe--eCCCeeEEEecCCCCcEEEee
Q 021925 210 SLDKSAKLWDARTL----------ELIK-TYV--TERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 210 ~~dg~i~iwd~~~~----------~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~ 251 (305)
..++.|.-|.+..+ +.+. .+. ....-..++|.|||.+.++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 24556666665541 1111 121 112346799999997666544
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.76 E-value=0.071 Score=39.10 Aligned_cols=98 Identities=9% Similarity=-0.075 Sum_probs=61.7
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEe------eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 220 (305)
..+..++|+|++.+.+. .+|.++-.+..+.... ..+-. .+- ....++.|.|+|.+.++ .||.|+-++-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~-~Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN-GGW-NQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC-SCG-GGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc-ccc-ccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 46779999998886665 6788777776542211 11100 011 12478899999987777 5799988875
Q ss_pred CCceEE-----EEEeeC---CCeeEEEecCCCCcEEEe
Q 021925 221 RTLELI-----KTYVTE---RPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 221 ~~~~~~-----~~~~~~---~~v~~~~~~~~~~~l~~~ 250 (305)
.+...- ...-.. ..+..+.+.|+|.+-++.
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 331110 011111 357999999999887777
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.42 Score=37.79 Aligned_cols=65 Identities=15% Similarity=0.040 Sum_probs=44.3
Q ss_pred eCCCceEEEEcCCCeeeEEecC----CCcceEE---EEE-----cCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeC
Q 021925 29 AKDHTPTVWFADNGERLGTYRG----HNGAVWC---CDV-----SRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (305)
Q Consensus 29 ~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~---i~~-----~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 93 (305)
+.||.|..++..+|.....+.. ...++.. ... ...+..+++++.+|++...|+++|+.+..+...
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 5799999999888765544331 1222221 001 013457889999999999999999999998744
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.56 E-value=0.61 Score=36.26 Aligned_cols=201 Identities=8% Similarity=-0.015 Sum_probs=105.1
Q ss_pred EcCCCCEEEEeeC--CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCC--------------CcEEEEec
Q 021925 18 YNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--------------QTAKLWNV 81 (305)
Q Consensus 18 ~~~~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--------------g~v~vwd~ 81 (305)
++++|..|+.... ++.|...+.+ +.....+.. +.+ --+++++.+|+-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~--~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN--DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE--EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC--Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 3456666666542 3455555543 333444442 222 3457788888766543 35777777
Q ss_pred CCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEE
Q 021925 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (305)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 161 (305)
..++...... . ....+++++..++..... ......++.+... +.....+..+.. ..++|+++.|
T Consensus 96 dg~~~~~l~~--~--~~~~~s~~g~~Iy~~~~~---~~~~~~Iy~~~~d-----Gs~~~~lt~~~~----~~~~~~g~~i 159 (302)
T 3s25_A 96 NGHGSTVLDP--D--PCIYASLIGNYIYYLHYD---TQTATSLYRIRID-----GEEKKKIKNHYL----FTCNTSDRYF 159 (302)
T ss_dssp TSCCCEEEEC--S--CEEEEEEETTEEEEEEES---SSSCEEEEEEETT-----SCCCEEEESSCC----CCSEEETTEE
T ss_pred CCCcceEeec--C--CccEEEEeCCEEEEEeec---CCCCceEEEEECC-----CCCeEEEeCCCc----eEeeEECCEE
Confidence 7665333222 1 123677777777665300 0112233333322 122233333322 3467788888
Q ss_pred EEeeC-CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC--CeEEEEEcCCceEEEEEeeCCCeeEE
Q 021925 162 ISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--KSAKLWDARTLELIKTYVTERPVNAV 238 (305)
Q Consensus 162 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~v~~~ 238 (305)
+-.+. ...|...++..+.....+. + ... ..++|++.+|+-...+ ..|..-++..... ..+. ...+ .
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~~---~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-~~~~--~ 228 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFYD---C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-EANI--E 228 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEEC---S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-CSCE--E
T ss_pred EEEeCCCceEEEEECCCCCEEEEeC---C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-CCCc--c
Confidence 86554 6788888987655433332 1 112 2356888888766543 3566667665442 2222 2223 3
Q ss_pred EecCCCCcEEEe
Q 021925 239 TMSPLLDHVCIG 250 (305)
Q Consensus 239 ~~~~~~~~l~~~ 250 (305)
.|+|+++.|.-+
T Consensus 229 ~~~~~g~~Iy~~ 240 (302)
T 3s25_A 229 HYNVYGSLIFYQ 240 (302)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEECCCEEEEE
Confidence 477888877765
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.11 E-value=0.89 Score=35.45 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=35.8
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC--------------CeEEE
Q 021925 157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--------------KSAKL 217 (305)
Q Consensus 157 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i 217 (305)
+++.++.|+.+ ..+.+||+.+.+-...-. ..........+.+ ++++++.|+.+ ..+.+
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~ 282 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE-FPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWK 282 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC-CSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCC-CCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEE
Confidence 45666666643 357789988765433211 1111112222222 56677777754 34777
Q ss_pred EEcCCceEE
Q 021925 218 WDARTLELI 226 (305)
Q Consensus 218 wd~~~~~~~ 226 (305)
||+.+.+-.
T Consensus 283 yd~~~~~W~ 291 (318)
T 2woz_A 283 YEDDKKEWA 291 (318)
T ss_dssp EETTTTEEE
T ss_pred EeCCCCEeh
Confidence 887765443
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.94 E-value=1.3 Score=36.37 Aligned_cols=217 Identities=9% Similarity=0.068 Sum_probs=137.3
Q ss_pred CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEE
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 110 (305)
+..|.|-|+.++..+.+-.-.. -+.-.+|..+.+|--. ..++.|+|+++.+.+..+..+..|.--.|..+..+.++
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A---dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV 122 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 122 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC---SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE
T ss_pred CCeEEEEECCCCCcceeccccc---ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE
Confidence 3478888988765443322111 2234678777776654 58899999999999999999999999999988888777
Q ss_pred eCCcceeeeeeEEEEEeecccCCCCCceEEEEeccC----CCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCc
Q 021925 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ----GRINRAVWGPLNRTIISAG-------EDAIVRIWDTETGK 179 (305)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~ 179 (305)
+.. .+.-|.+.. ...+...+..|. ..|..-..+++.++++..+ ..|.+.+|..+.+
T Consensus 123 T~t-------aVyHWsi~~-----~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~- 189 (494)
T 1bpo_A 123 TDN-------AVYHWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK- 189 (494)
T ss_dssp CSS-------EEEEEESSS-----SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-
T ss_pred cCC-------eeEEecccC-----CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-
Confidence 653 455555532 335666666553 4566777888898877443 2478899998754
Q ss_pred EeeeeccccCCccceEEEEEcCCC---CEEEEEeC---CCeEEEEEcCCc---e-----EEEEEe-e----CCCeeEEEe
Q 021925 180 LLKESDKETGHKKTITSLAKAADG---SHFLTGSL---DKSAKLWDARTL---E-----LIKTYV-T----ERPVNAVTM 240 (305)
Q Consensus 180 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~---~-----~~~~~~-~----~~~v~~~~~ 240 (305)
..+.++ +|......+....+. ..++.+.. .+++.|-++... . ....+. . ..-..++..
T Consensus 190 ~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 190 VSQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp CEEEEC---CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred ccchhe---eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 334454 676666555443221 23333333 278999988532 1 111111 1 223457788
Q ss_pred cCCCCcEEEeeCCcEEEEEEeehhhhhhhhhh
Q 021925 241 SPLLDHVCIGEPQTIKFMLLVYLFVLFLDILF 272 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
++....+..-+..|. ++++++.....+
T Consensus 267 s~kygviyviTK~G~-----i~lyDleTgt~i 293 (494)
T 1bpo_A 267 SEKHDVVFLITKYGY-----IHLYDLETGTCI 293 (494)
T ss_dssp ETTTTEEEEEETTSE-----EEEEETTTCCEE
T ss_pred cccCCEEEEEecCce-----EEEEecccceee
Confidence 888888888788887 455555444444
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.94 E-value=1.2 Score=42.44 Aligned_cols=206 Identities=9% Similarity=0.070 Sum_probs=121.1
Q ss_pred CCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEE
Q 021925 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110 (305)
Q Consensus 31 dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 110 (305)
..+|.|-|+.++..+.+-. -.--+.-.+|..+.++--. ..++.|+|+++.+.+..+..+.+|.--.|.....+.++
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV 122 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 122 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE
Confidence 3478888888765442211 1112334678777666554 68899999999999999999889988888888777776
Q ss_pred eCCcceeeeeeEEEEEeecccCCCCCceEEEEecc----CCCeeEEEEcCCCCEEEEee-------CCCcEEEEeCCCCc
Q 021925 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGP----QGRINRAVWGPLNRTIISAG-------EDAIVRIWDTETGK 179 (305)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~ 179 (305)
+.. .+..|.+.. ...+...+..| ...|..-..+++.++++..+ ..|.+.+|....+.
T Consensus 123 T~~-------aVyHW~~~~-----~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 123 TDN-------AVYHWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred cCC-------eEEEeccCC-----CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 643 455555532 22333333333 45677777888888877443 35789999886432
Q ss_pred EeeeeccccCCccceEEEEEc--CC-CCEEEEEeC---CCeEEEEEcCCc---eEE------EEEe----eCCCeeEEEe
Q 021925 180 LLKESDKETGHKKTITSLAKA--AD-GSHFLTGSL---DKSAKLWDARTL---ELI------KTYV----TERPVNAVTM 240 (305)
Q Consensus 180 ~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---dg~i~iwd~~~~---~~~------~~~~----~~~~v~~~~~ 240 (305)
.+.+. +|.+....+... +. ...++.+.. .+.+.|-++... .+. ..+. ...-..++..
T Consensus 191 -sQ~ie---gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 191 -SQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred -chhhh---HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 23333 555444333332 11 122222221 267888887432 111 1111 1122346677
Q ss_pred cCCCCcEEEeeCCcEE
Q 021925 241 SPLLDHVCIGEPQTIK 256 (305)
Q Consensus 241 ~~~~~~l~~~~~~~~~ 256 (305)
++....+..-+..|..
T Consensus 267 s~k~g~iy~itk~G~~ 282 (1630)
T 1xi4_A 267 SEKHDVVFLITKYGYI 282 (1630)
T ss_pred ccccCEEEEEecCceE
Confidence 7777777777777763
No 343
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.72 E-value=2.8 Score=39.33 Aligned_cols=211 Identities=10% Similarity=0.044 Sum_probs=107.5
Q ss_pred CEEEEeeCCCceEEEEcCCCeee--EEecCCCcceEEEEEcCC------CcEEEEEeC-CCcEEEEecCCCCeeEEEeeC
Q 021925 23 DLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRD------SMTLITGSA-DQTAKLWNVETGAQLFTFNFD 93 (305)
Q Consensus 23 ~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~------~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~ 93 (305)
.+++.++ ++.+.++.+.+++.. ... .-.+.|.|+++.|. +++++.|.. |++|+|+++.+.+.+.....+
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~ 601 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG 601 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence 3555554 567888877765422 222 23568999999863 368899986 999999999987777665543
Q ss_pred C--CceEEEEec--CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE---EEEeccCCCeeEEEEcCCCC-EEEEee
Q 021925 94 S--PARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV---LILKGPQGRINRAVWGPLNR-TIISAG 165 (305)
Q Consensus 94 ~--~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~ 165 (305)
. .+.++.+.. +..++.++..+...+.. .+.. ..+... ...-+ ..++.-..+...+. .+++.+
T Consensus 602 ~~~~p~si~l~~~~~~~~L~igl~dG~l~~~-----~~d~----~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s 671 (1158)
T 3ei3_A 602 GEIIPRSILMTTFESSHYLLCALGDGALFYF-----GLNI----ETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS 671 (1158)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTSEEEEE-----EECT----TTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES
T ss_pred CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE-----EEcC----CCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC
Confidence 2 455554443 22344444332222111 1110 011111 11112 22333233333333 233333
Q ss_pred CCCcEEEEeCCCCcEeeeeccccCCccce-EEEEEcCC--CCEEEEEeCCCeEEEEEcCCc--eEEEEEeeCCCeeEEEe
Q 021925 166 EDAIVRIWDTETGKLLKESDKETGHKKTI-TSLAKAAD--GSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVTM 240 (305)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~ 240 (305)
+.-..++--+ ++....-. ....+ ....|+.. ..-++..+ ++.++|..+.+. -.++++..+..+..+++
T Consensus 672 -~rp~liy~~~-~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y 744 (1158)
T 3ei3_A 672 -DRPTVIYSSN-HKLVFSNV----NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICY 744 (1158)
T ss_dssp -SSCEEEEESS-SSEEEEEB----SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEE
T ss_pred -CCCEEEEEcC-CceEEecc----ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEE
Confidence 3333334322 22221110 11122 22334331 12344433 456888887543 34455667778999999
Q ss_pred cCCCCcEEEeeC
Q 021925 241 SPLLDHVCIGEP 252 (305)
Q Consensus 241 ~~~~~~l~~~~~ 252 (305)
+|..+.++++..
T Consensus 745 ~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 745 QEVSQCFGVLSS 756 (1158)
T ss_dssp EGGGTEEEEEEE
T ss_pred cCCCCEEEEEEE
Confidence 999888776643
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.54 E-value=1.7 Score=36.07 Aligned_cols=106 Identities=11% Similarity=0.055 Sum_probs=60.7
Q ss_pred CCeeEEEEcCCCC-EEEEeeCCCcEEEEeCCCCc---Eeeeecccc------CCccceEEEEEcCC----CCEEEEEeC-
Q 021925 147 GRINRAVWGPLNR-TIISAGEDAIVRIWDTETGK---LLKESDKET------GHKKTITSLAKAAD----GSHFLTGSL- 211 (305)
Q Consensus 147 ~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~------~~~~~v~~~~~~~~----~~~l~~~~~- 211 (305)
.....|+|.|++. .|+.+...|.|++++..... .+..+.... ........|+++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999995 45566778999999754221 222222111 11456889999996 444444332
Q ss_pred -C----------CeEEEEEcCC----------ceEEEEEe---eCCCeeEEEecCCCCcEEEeeC
Q 021925 212 -D----------KSAKLWDART----------LELIKTYV---TERPVNAVTMSPLLDHVCIGEP 252 (305)
Q Consensus 212 -d----------g~i~iwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~ 252 (305)
+ ..|.-|.+.. .+.+..+. ....-..++|.|||.+.++.++
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455432 22333332 1233578999999976555443
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.05 E-value=2.2 Score=35.42 Aligned_cols=236 Identities=13% Similarity=0.083 Sum_probs=117.9
Q ss_pred ccceEEEEEcCCCC-EEEEeeCCCceEEEEcCCC---eeeEEec---------CCCcceEEEEEcCC----CcEEEEEeC
Q 021925 10 ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG---ERLGTYR---------GHNGAVWCCDVSRD----SMTLITGSA 72 (305)
Q Consensus 10 ~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~---~~~~~~~---------~~~~~v~~i~~~~~----~~~l~s~~~ 72 (305)
-.....|+|.|+|. .|+.+...|.|++++.... +.+..+. ........|+|+|+ +...++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34567999999996 4555577899999974322 1222221 11456899999996 444343332
Q ss_pred --C----------CcEEEEecCC----------CCeeEEEe---eCCCceEEEEecCCceEEEeCCccee----------
Q 021925 73 --D----------QTAKLWNVET----------GAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFME---------- 117 (305)
Q Consensus 73 --d----------g~v~vwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~---------- 117 (305)
+ ..|.-|.+.. .+.+..+. .......++|.|++.+.+...+....
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence 1 1344455532 12333332 22345689999999888877664321
Q ss_pred eeeeEEEEEeecccC-------CC---C------CceEEEEeccCCCeeEEEEcCC-----CC-EEEEeeCCC----cEE
Q 021925 118 LNSAIHVKRIARDPA-------DQ---G------GESVLILKGPQGRINRAVWGPL-----NR-TIISAGEDA----IVR 171 (305)
Q Consensus 118 ~~~~~~~~~~~~~~~-------~~---~------~~~~~~~~~~~~~i~~~~~~~~-----~~-~l~~~~~dg----~i~ 171 (305)
.....++..+..... .. . ......-.+|. ....++|+|. |+ ++..+...| .-.
T Consensus 173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 011223344332221 00 0 01112222333 3457899997 33 344332212 123
Q ss_pred EEeCCCCc------EeeeeccccCCc--cceEEEEEcCC-------CCEEEEEeCCCeEEEEEcCCceE---EEEE-e--
Q 021925 172 IWDTETGK------LLKESDKETGHK--KTITSLAKAAD-------GSHFLTGSLDKSAKLWDARTLEL---IKTY-V-- 230 (305)
Q Consensus 172 iwd~~~~~------~~~~~~~~~~~~--~~v~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~-- 230 (305)
|..+..+. ++..+. +. ..+..+.|... +. ++.+...+.|....++.... ...+ .
T Consensus 252 i~~i~~G~~yG~~~P~~~~~----~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~ 326 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFK----PFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGT 326 (463)
T ss_dssp EEEEC----CCSCCCCEECC----C----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEE
T ss_pred EeeeccCCCCCCCCCeEEee----CCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCC
Confidence 33333222 233332 22 46778887543 23 44555557766666543321 1111 0
Q ss_pred -------eCCCeeEEEecCCCCcEEEee
Q 021925 231 -------TERPVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 231 -------~~~~v~~~~~~~~~~~l~~~~ 251 (305)
...++.++...|||.++++..
T Consensus 327 ~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 327 SGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp TTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred cccccccccCcceEEEECCCCCEEEEec
Confidence 124689999999998877765
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.89 E-value=1.8 Score=33.71 Aligned_cols=216 Identities=10% Similarity=0.021 Sum_probs=94.2
Q ss_pred EEEEeeCCCceEEEEcCCCeeeE-EecCCCcceEEEEEcCCCcEEEEEeC----CC-------cEEEEecCCCCeeEEEe
Q 021925 24 LLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSA----DQ-------TAKLWNVETGAQLFTFN 91 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~----dg-------~v~vwd~~~~~~~~~~~ 91 (305)
.++.|+. .+..||..+++-.. .+..............++..++.|+. ++ .+.++|..+.+-...-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4445553 48899998877543 12211112222233446777788873 12 16778877664322211
Q ss_pred eCCC--ceEEEEecCCceEEEeCCc--ceeeeeeEEEEEeecccCCCCCceEEEEec-cCCCe-eEEEEcCCCCEEEEee
Q 021925 92 FDSP--ARSVDFAVGDKLAVITTDP--FMELNSAIHVKRIARDPADQGGESVLILKG-PQGRI-NRAVWGPLNRTIISAG 165 (305)
Q Consensus 92 ~~~~--v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i-~~~~~~~~~~~l~~~~ 165 (305)
.+.+ -.+++.. ++.+.+.++.. .......+...+.... .-..+.. ..... .+++. .+++.++.|+
T Consensus 96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-------~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAA-------KWSEVKNLPIKVYGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTT-------EEEEECCCSSCEESCEEEE-ETTEEEEECC
T ss_pred CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCC-------CEeECCCCCCcccccEEEE-ECCEEEEEcC
Confidence 2221 1223222 45555554421 1112222333322111 0001100 00000 11222 3566666665
Q ss_pred C------CCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCceEEEEEeeCC-
Q 021925 166 E------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTER- 233 (305)
Q Consensus 166 ~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~- 233 (305)
. -..+.+||+.+.+-...-... ........+.+ ++++++.|+.+ ..+.+||+.+.+-...-....
T Consensus 167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 243 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE 243 (318)
T ss_dssp EESSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC
T ss_pred CCCCCCccceEEEEcCCCCEEEECCCCC-CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc
Confidence 3 245899999876543221111 11111222222 56777777653 357788988764332211111
Q ss_pred CeeEEEecCCCCcEEEeeCC
Q 021925 234 PVNAVTMSPLLDHVCIGEPQ 253 (305)
Q Consensus 234 ~v~~~~~~~~~~~l~~~~~~ 253 (305)
.....+..-++++++.|+.+
T Consensus 244 r~~~~~~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 244 RSSISLVSLAGSLYAIGGFA 263 (318)
T ss_dssp CBSCEEEEETTEEEEECCBC
T ss_pred ccceEEEEECCEEEEECCee
Confidence 11111222355667776654
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.36 E-value=2.4 Score=33.56 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=45.2
Q ss_pred CCCEEEEeeCC-CceEEEEcCC--Cee--eEEec-CCCcceEEEEEcCCCcEEEEEeC-C---------CcEEEEecCCC
Q 021925 21 DGDLLFSCAKD-HTPTVWFADN--GER--LGTYR-GHNGAVWCCDVSRDSMTLITGSA-D---------QTAKLWNVETG 84 (305)
Q Consensus 21 ~~~~l~s~~~d-g~v~iw~~~~--~~~--~~~~~-~~~~~v~~i~~~~~~~~l~s~~~-d---------g~v~vwd~~~~ 84 (305)
+++.++.|+.+ ..+.++|..+ .+- +..+. .....-..+.+ +++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666776643 4788888864 322 22222 11111122222 5667777765 2 46888898776
Q ss_pred CeeEEEeeC-C-CceEEEEecCCceEEEeCC
Q 021925 85 AQLFTFNFD-S-PARSVDFAVGDKLAVITTD 113 (305)
Q Consensus 85 ~~~~~~~~~-~-~v~~~~~~~~~~~~~~~~~ 113 (305)
+-...-... . .....+...++++.+.++.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 127 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCc
Confidence 422211111 1 1222223356666666653
No 348
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.88 E-value=4.8 Score=35.75 Aligned_cols=227 Identities=10% Similarity=0.028 Sum_probs=119.9
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
.|.++...+++..|..|+. +-+..++..+++...........|.++...++|.+.+ |+.+ -+.+++..+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEc
Confidence 3788888777765555553 4577888776654322111234688888887776554 4444 48888877654432211
Q ss_pred --------eCCCceEEEEecCCceEEEeCCcceeeeee-EEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEE
Q 021925 92 --------FDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (305)
Q Consensus 92 --------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 162 (305)
....|.++....++.+-+....+ ...... ............ -......|.++.-..+|++.
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~i~~D~~g~lW- 338 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQIT--------GTGDGNQFYSLFRDSKGFYW- 338 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHS--------CSCCCCBEEEEEECTTCCEE-
T ss_pred CCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCC--------CCCCCceEEEEEEcCCCCEE-
Confidence 12346677666666665555432 111100 000000000000 00112457788877777644
Q ss_pred EeeCCCcEEEEeCCCCc--Eeeeeccc----cCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe------
Q 021925 163 SAGEDAIVRIWDTETGK--LLKESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------ 230 (305)
Q Consensus 163 ~~~~dg~i~iwd~~~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------ 230 (305)
.|+.+| +..++..+++ ....+... .-....|.++.-.++|++. .|+ ++-+..+|..+++...-..
T Consensus 339 iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~~~~~~~ 415 (758)
T 3ott_A 339 FGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNIVDNTGT 415 (758)
T ss_dssp EEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEEECCC--
T ss_pred EeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeecCCCcCC
Confidence 445554 6677765432 11112100 0123468888888887644 455 4569999988765433211
Q ss_pred -eCCCeeEEEecCCCCcEEEeeC-CcE
Q 021925 231 -TERPVNAVTMSPLLDHVCIGEP-QTI 255 (305)
Q Consensus 231 -~~~~v~~~~~~~~~~~l~~~~~-~~~ 255 (305)
....|.++.-.++|++ .+|+. .+.
T Consensus 416 ~~~~~v~~i~~d~~g~l-WigT~~~Gl 441 (758)
T 3ott_A 416 YNTNWTYYIFEDTAGQL-WISTCLGGI 441 (758)
T ss_dssp CBSSSEEEEEECTTSEE-EEEESSSCE
T ss_pred CCCceEEEEEEcCCCCE-EEEECCCce
Confidence 1234778877777764 44554 443
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.60 E-value=2.9 Score=32.46 Aligned_cols=200 Identities=6% Similarity=-0.045 Sum_probs=102.0
Q ss_pred EEcCCCCEEEEeeCC--------------CceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEe--CC--CcEEE
Q 021925 17 KYNKDGDLLFSCAKD--------------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS--AD--QTAKL 78 (305)
Q Consensus 17 ~~~~~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~d--g~v~v 78 (305)
-++++|.+|+-+... ..|+..++..++. ..+.... +..|+++++.|+-.. .+ ..|..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEECSC----EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeecCC----ccEEEEeCCEEEEEeecCCCCceEEE
Confidence 457888888876543 3566667665543 3333222 226777888887665 33 44555
Q ss_pred EecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCC
Q 021925 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (305)
Q Consensus 79 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (305)
.++...+. ..+.... + ..++++++.+.....+ ...++.+... ......... +... ..++|++
T Consensus 134 ~~~dGs~~-~~lt~~~-~--~~~~~~g~~iy~t~~g------~~~Iy~~~l~----g~~~~~l~~---~~~~-~~~~P~g 195 (302)
T 3s25_A 134 IRIDGEEK-KKIKNHY-L--FTCNTSDRYFYYNNPK------NGQLYRYDTA----SQSEALFYD---CNCY-KPVVLDD 195 (302)
T ss_dssp EETTSCCC-EEEESSC-C--CCSEEETTEEEEECTT------TCCEEEEETT----TTEEEEEEC---SCEE-EEEEEET
T ss_pred EECCCCCe-EEEeCCC-c--eEeeEECCEEEEEeCC------CceEEEEECC----CCCEEEEeC---CCcc-ceeeecC
Confidence 56654333 3333221 2 3457777777766541 1112222111 111111222 2222 2356889
Q ss_pred CEEEEeeCC--CcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceEEEEEeeCCC
Q 021925 159 RTIISAGED--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYVTERP 234 (305)
Q Consensus 159 ~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 234 (305)
++|+-...+ ..|..-++.... ...+. ...+ ..++|++..|.-++ ..+.|..-++.... .+.+... .
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~-~ 265 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPN-PVVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAKG-E 265 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCC-CEECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEES-C
T ss_pred CEEEEEEcCCCcEEEEEECCCCC-eEEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeCC-c
Confidence 888866543 467777776544 33332 1223 23778888887653 24567777765433 2333222 2
Q ss_pred eeEEEecCCCCcEEEee
Q 021925 235 VNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 235 v~~~~~~~~~~~l~~~~ 251 (305)
+. .+++.+.+|+-..
T Consensus 266 ~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 266 FC--NINVTSQYVYFTD 280 (302)
T ss_dssp EE--EEEECSSEEEEEE
T ss_pred cc--eEEEeCCEEEEEE
Confidence 32 4455566665543
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.30 E-value=6.7 Score=36.01 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777777888899999999999999999999988765
No 351
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=91.78 E-value=3.8 Score=31.98 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=61.0
Q ss_pred CCCEEEEeeCCCcEEEEeCCC-------CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----
Q 021925 157 LNRTIISAGEDAIVRIWDTET-------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----- 224 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----- 224 (305)
+..+++..+..|.++...+.. +.....+. . ...+..+....++..++..+.+|.+..+....-.
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~---~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~ 188 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN---D-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRG 188 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC---T-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC---C-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCC
Confidence 456788899999999888743 22222222 2 4455555554555678889999999999875421
Q ss_pred --EEEE--EeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEe
Q 021925 225 --LIKT--YVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 225 --~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (305)
-+.. +..+..|.++..-+++..+++.+..+......+
T Consensus 189 ~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 189 TQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp BCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 1122 223455666655555566667777776444443
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.67 E-value=8.5 Score=34.01 Aligned_cols=225 Identities=8% Similarity=-0.015 Sum_probs=109.0
Q ss_pred eEEEE-EcCCCCEEEEee----CC-CceEEEEcCCCeeeE-Eec-CCCc------ceEEEEEcCCCcEEEEE--------
Q 021925 13 LTYLK-YNKDGDLLFSCA----KD-HTPTVWFADNGERLG-TYR-GHNG------AVWCCDVSRDSMTLITG-------- 70 (305)
Q Consensus 13 v~~~~-~~~~~~~l~s~~----~d-g~v~iw~~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~l~s~-------- 70 (305)
...+. ++|++++++.+- +| ..++++|+.+++.+. .+. .-+. ....++|..+...+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34455 889998877642 22 378999999998763 122 0001 11344777444444432
Q ss_pred --eCCCcEEEEecCCCC--eeEEEeeCC-C-ceEEEEecCCce----EEEeCC-cceeeeeeEEEEEeecccCCCCCceE
Q 021925 71 --SADQTAKLWNVETGA--QLFTFNFDS-P-ARSVDFAVGDKL----AVITTD-PFMELNSAIHVKRIARDPADQGGESV 139 (305)
Q Consensus 71 --~~dg~v~vwd~~~~~--~~~~~~~~~-~-v~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (305)
+...+|+.|.+-+.. -...+..+. . -.....++++.. +++... .. ......+.+.. ...+ ..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~----~~~~-~~ 283 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDF--YNYDNYILDTK----YKNL-KL 283 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSS--SCEEEEEEECS----SSSC-EE
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEeccc--CceeEEEEcCC----CCCC-cc
Confidence 112568888776553 222333221 1 223334455542 233211 11 11111111110 0011 11
Q ss_pred EEEeccCCCeeEEEEcCCCCEEEEe----------eCCCcEEEEeCCCCc-------Eeee-eccccCCccceEEEEEcC
Q 021925 140 LILKGPQGRINRAVWGPLNRTIISA----------GEDAIVRIWDTETGK-------LLKE-SDKETGHKKTITSLAKAA 201 (305)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~ 201 (305)
..+..... ..+..+.++.+++.. ...+.|...|+.+.. ..+. +. ......+..+.+..
T Consensus 284 ~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 359 (711)
T 4hvt_A 284 QKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT--PTANEVFNFISTTK 359 (711)
T ss_dssp EECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC--CCTTEEEEEEEECS
T ss_pred eEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC--CCCCCeEEEEEEEC
Confidence 22221111 112334455444422 246789999987632 1122 22 12345678888887
Q ss_pred CCCEEEEEeCCCe--EEEEEcCCce-EEEE-Ee--eCCCeeEEEecCCCCcEEE
Q 021925 202 DGSHFLTGSLDKS--AKLWDARTLE-LIKT-YV--TERPVNAVTMSPLLDHVCI 249 (305)
Q Consensus 202 ~~~~l~~~~~dg~--i~iwd~~~~~-~~~~-~~--~~~~v~~~~~~~~~~~l~~ 249 (305)
+ .++++...++. +.++|+.+++ .... +. ....+.....++++..++.
T Consensus 360 ~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~ 412 (711)
T 4hvt_A 360 D-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALI 412 (711)
T ss_dssp S-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEE
T ss_pred C-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEE
Confidence 6 56777777775 6777776664 2333 33 2345666677777765443
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.85 E-value=6.1 Score=31.06 Aligned_cols=105 Identities=7% Similarity=-0.032 Sum_probs=65.5
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcEe-----eeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcC--Cc------
Q 021925 157 LNRTIISAGEDAIVRIWDTETGKLL-----KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TL------ 223 (305)
Q Consensus 157 ~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~------ 223 (305)
+..+++..+.+|.++.-.+..-... ..+. . .....+..+........|+..+..|.+..+... .-
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~-l-ke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN-L-RDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB-C-CTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE-E-CCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence 4679999999999999887542211 1111 1 123445555555555678888899998888766 21
Q ss_pred ---eEEEEEeeCCCeeEEEecCCCCcEEEeeCCcEEEEEEeeh
Q 021925 224 ---ELIKTYVTERPVNAVTMSPLLDHVCIGEPQTIKFMLLVYL 263 (305)
Q Consensus 224 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (305)
...-.+..+..|.++...+.+..+++.+..|......+..
T Consensus 186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 2212233455677776666667888888888755554443
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.97 E-value=4.4 Score=37.21 Aligned_cols=39 Identities=26% Similarity=0.176 Sum_probs=33.9
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777778888899999999999999999999988765
No 355
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=88.71 E-value=8.1 Score=30.97 Aligned_cols=157 Identities=12% Similarity=0.033 Sum_probs=78.6
Q ss_pred EcCCCcEEEEEeCCCcEEEEecCC---------CCeeEEEeeCCCceEEEEecCCc-eEEEeCCcceeeeeeEEEEEeec
Q 021925 60 VSRDSMTLITGSADQTAKLWNVET---------GAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIAR 129 (305)
Q Consensus 60 ~~~~~~~l~s~~~dg~v~vwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 129 (305)
+-|+...+++.+.+|.|+--.+.+ +..-..++....+..+....... +++....+...... .+++..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~---~~eip~ 79 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP---VHQLPE 79 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEE---GGGSCB
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEE---HHHCcC
Confidence 346777888999999998765421 12222333445555555444444 33333322211111 111111
Q ss_pred ccCCCCCceEE---EEeccCCCeeEEEEcC---CCCEEEEeeCCCcEEEEeCCCCc-----EeeeeccccCCccceEEEE
Q 021925 130 DPADQGGESVL---ILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGK-----LLKESDKETGHKKTITSLA 198 (305)
Q Consensus 130 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~ 198 (305)
......+.++. .+. ....|.++..-+ .+.+|+.++..|.++...+..-. -+..+.. .. ...+-.+.
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L-~~-~d~lv~v~ 156 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINL-DE-GDALVGVA 156 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCC-CT-TCCEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEe-CC-CCEEEEEE
Confidence 11111222111 112 233454444332 35689999999999998864321 1112211 12 34444444
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 199 KAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
...+...++..+.+|.+..++...
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCceEEEEeCCCeEEEEEccc
Confidence 444555788888899888887643
No 356
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=88.62 E-value=7.5 Score=30.48 Aligned_cols=101 Identities=8% Similarity=0.052 Sum_probs=58.3
Q ss_pred CCEEEEeeCCCcEEEEeCCCC------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-------
Q 021925 158 NRTIISAGEDAIVRIWDTETG------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE------- 224 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------- 224 (305)
+.+++.++.+|.++...+..- +-+..+... ....+-.+........++..+.+|.+..+....-.
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~--e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~ 183 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK--NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA 183 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC--TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC--CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc
Confidence 568999999999999887421 112222211 22445455444455678888899998888765321
Q ss_pred EEEE--EeeCCCeeEEEecCCCC-cEEEeeCCcEEEEEE
Q 021925 225 LIKT--YVTERPVNAVTMSPLLD-HVCIGEPQTIKFMLL 260 (305)
Q Consensus 225 ~~~~--~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~ 260 (305)
-+.. +..+..|.++..-+++. .+++.+..+......
T Consensus 184 GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~ 222 (323)
T 1wp5_A 184 GVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMK 222 (323)
T ss_dssp CEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEE
Confidence 1222 22344566665444444 566667666643333
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.09 E-value=7.4 Score=29.77 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=34.9
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 223 (305)
..|..++...+.. ++. .||.|+.|-......+..-. .....|..++-.... .++.. ||+++.|-....
T Consensus 180 ~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 180 SGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPT---EALSGVSAIASGEWY-SLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCG---GGGSSCCEEEECSSC-EEEEE--TTEEEEESTTCC
T ss_pred CCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCc---ccCCCceEEEcCCCE-EEEEE--CCEEEEecCCCC
Confidence 3455665543322 223 58888888765432221111 122346666654332 33333 888998876543
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.05 E-value=7.4 Score=29.75 Aligned_cols=182 Identities=10% Similarity=0.010 Sum_probs=82.4
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCCeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeE-EE
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF 90 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~ 90 (305)
.|..++.... +.+.-. ||.|+.|-......+..-......|..++...+. .++. . ||.|..|-......+- -.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 5667766543 223235 8999999754322211111122357777665433 3333 4 8999999654321110 00
Q ss_pred eeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCCcE
Q 021925 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (305)
Q Consensus 91 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 170 (305)
.....+..++.......++. ++ .+..|-...... .+. .......|..++...+. .+.-. ||.|
T Consensus 99 ~~~~~v~~ia~G~~hs~al~--~G------~v~~wG~n~~gq--lg~----~~~~~~~i~~i~~G~~~--~~~l~-~G~v 161 (282)
T 3qhy_B 99 EARSGVDAIAAGAWASYALK--DG------KVIAWGDDSDGQ--TTV----PAEAQSGVTALDGGVYT--ALAVK-NGGV 161 (282)
T ss_dssp GGSSSEEEEEEETTEEEEEE--TT------EEEEEECCTTST--TSC----CGGGGSSEEEEEECSSE--EEEEE-TTEE
T ss_pred ccCCCeEEEECcCCEEEEEe--CC------eEEEecCCCCCc--CCC----CccCCCCeEEEEcccCE--EEEEE-CCEE
Confidence 01223333333222222222 11 111111111000 000 01123346666554332 22233 7999
Q ss_pred EEEeCCCCcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
+.|-......+..-. .....|..++-..+. .++. .||.|+.|-...
T Consensus 162 ~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 162 IAWGDNYFGQTTVPA---EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp EEEECCTTSTTSCCG---GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred EEecCCCCCCCCCce---ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence 999765432221111 123567777665442 3444 599999997654
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.14 E-value=9.4 Score=29.97 Aligned_cols=160 Identities=12% Similarity=0.079 Sum_probs=82.7
Q ss_pred cceEEE-EEcC--CCCEEEEeeCCCceEEEEcCCC-------eeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe
Q 021925 11 RPLTYL-KYNK--DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (305)
Q Consensus 11 ~~v~~~-~~~~--~~~~l~s~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd 80 (305)
+.|.++ ...+ +..+++.++.+|.++.-.+.+. .....++. .+.+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 445554 3432 5679999999999999876542 22223443 34555555555556777788889988887
Q ss_pred cC--CCCe-------e--EEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC-C--CCceEEEEeccC
Q 021925 81 VE--TGAQ-------L--FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-Q--GGESVLILKGPQ 146 (305)
Q Consensus 81 ~~--~~~~-------~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 146 (305)
.. .-.. + ..+.....+..+...+.+..++..+.. +.+....+...... . .+.....+....
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~-----G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~ 248 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSG-----GYAKRTAIEEYPVQGRGGKGVLTVMYDRRR 248 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETT-----SEEEEEEGGGSCBCCTTSCCEESSCCCTTT
T ss_pred CcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCC-----CcEEEEEHHHccccCcCCCcEEEEEecCCC
Confidence 65 2111 1 112234455565555544444444332 22222222221111 1 111111222223
Q ss_pred CCeeEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 021925 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTE 176 (305)
Q Consensus 147 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 176 (305)
+.+-.+....+...++..+.+|.+.-++..
T Consensus 249 d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 249 GRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 344444444445567777778887777764
No 360
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=87.07 E-value=9.1 Score=29.72 Aligned_cols=109 Identities=6% Similarity=-0.066 Sum_probs=62.4
Q ss_pred CeeEEEEc---CCCCEEEEeeCCCcEEEEeCCCCc-----EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 021925 148 RINRAVWG---PLNRTIISAGEDAIVRIWDTETGK-----LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (305)
Q Consensus 148 ~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 219 (305)
.|..+..- +++.+++..+.+|.++.-.+..-. -+..+.. ... ..+..+....+...++..+.+|.+..++
T Consensus 96 ~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l-~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 96 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VDG-DELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCC-CTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEE-CCC-CEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 45444332 345678999999999998764211 1111211 122 4454544444555788888899988887
Q ss_pred cCCceE-------EE--EEeeCCCeeEEEecCCCCcEEEeeCCcEEEE
Q 021925 220 ARTLEL-------IK--TYVTERPVNAVTMSPLLDHVCIGEPQTIKFM 258 (305)
Q Consensus 220 ~~~~~~-------~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 258 (305)
...-.. +. .+..+..|.++...+++..+++.+..+....
T Consensus 174 ~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 221 (307)
T 1zi0_A 174 ESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKR 221 (307)
T ss_dssp GGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEE
T ss_pred HHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEE
Confidence 653211 11 2224455666665555566777777776433
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.20 E-value=9.5 Score=29.08 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEE---EEcCCCeeeEEecCCCcceEEEEEcC-CCcEEEEEeCCCcEEEEecCCCC--
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTV---WFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA-- 85 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~i---w~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~v~vwd~~~~~-- 85 (305)
.+..+.-......|+.-+.+|.++- +++..+.....+. ..+.|..+.-.. +...++.++.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 4555554444555666677776654 3333332111133 345666664421 46789999999999999865432
Q ss_pred --ee--EEEeeCCCceEEEEecCC-ceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCeeEEEEcCCCCE
Q 021925 86 --QL--FTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (305)
Q Consensus 86 --~~--~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (305)
-. ..+.....+..+...... .+++.+..+....... .++........+.....+.. ...|..+...+++..
T Consensus 104 ~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~---~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 104 AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSV---REVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEG---GGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEh---hhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 11 112233444444444333 3333333322111110 01111111111222222222 345666555566778
Q ss_pred EEEeeCCCcEEEEeCCCC-------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE--EEcCC
Q 021925 161 IISAGEDAIVRIWDTETG-------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL--WDART 222 (305)
Q Consensus 161 l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~~ 222 (305)
++..+..|.++...+..- +-+..+. ....+..+....+...++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVSG----TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECCC----SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEEc----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 999999999998886432 1222221 2233444333333345666677777776 76553
No 362
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.64 E-value=18 Score=31.82 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=77.8
Q ss_pred CCCcEEEEEeCC----CcEEEEecCCCCeeEEE-e-----eC--CCceEEEEec-CCceEEEeCCccee-eeeeEEEEEe
Q 021925 62 RDSMTLITGSAD----QTAKLWNVETGAQLFTF-N-----FD--SPARSVDFAV-GDKLAVITTDPFME-LNSAIHVKRI 127 (305)
Q Consensus 62 ~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~-~-----~~--~~v~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (305)
.++..++.||.+ ..+.+||..+++-...- . .+ ..-.+++..+ ++.+++.++..... ....+..++.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356677777753 46888998877543322 1 11 1223444443 66666665532211 2223333333
Q ss_pred ecccCCCCCceEEEEeccCCCeeEEEEcCCCCEEEEeeCCC--cEEEEeCCCCcEeeeecc--ccCCccceEEEEEcCC-
Q 021925 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDK--ETGHKKTITSLAKAAD- 202 (305)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~- 202 (305)
....- ..+..+.. ...-.+++...+++.++.|+.++ .+.+||..+.+-...-.. .........++.+..+
T Consensus 476 ~t~~W----~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTREW----SMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTEE----EECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCcE----EECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 21100 00000000 11112233324778888887654 799999987654332210 0011122233455554
Q ss_pred CCEEEEEeC--C-----CeEEEEEcCCce
Q 021925 203 GSHFLTGSL--D-----KSAKLWDARTLE 224 (305)
Q Consensus 203 ~~~l~~~~~--d-----g~i~iwd~~~~~ 224 (305)
+++++.|+. + ..+.+||+.+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 667777776 2 458999988776
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.88 E-value=14 Score=29.76 Aligned_cols=205 Identities=8% Similarity=0.002 Sum_probs=112.8
Q ss_pred cceEEEEEcCCCCEEEE--eeC-------------CCceEEEEcCCC--eeeEEecC------CCcceEEEEEc---CC-
Q 021925 11 RPLTYLKYNKDGDLLFS--CAK-------------DHTPTVWFADNG--ERLGTYRG------HNGAVWCCDVS---RD- 63 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s--~~~-------------dg~v~iw~~~~~--~~~~~~~~------~~~~v~~i~~~---~~- 63 (305)
-.|..+...+++++-+. |-. --.|.+||+.++ +.++++.- ....+..+.+. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 35777777777764332 211 125778999999 88887752 23467888887 22
Q ss_pred ---CcEEEEEe-CCCcEEEEecCCCCeeEEEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCCCCCceE
Q 021925 64 ---SMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 139 (305)
Q Consensus 64 ---~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (305)
+.++..+. ..+-|.|+|+.+++.-.... .. +.|+....+...+ +..
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~-~~------~~pd~~~~~~i~G-----------------------~~~ 216 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTH-PT------FKAERPTKFDYGG-----------------------KEY 216 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-GG------GSCCSCEEEEETT-----------------------EEE
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-CC------CccccCcceEECC-----------------------EEe
Confidence 33444433 46779999999887665442 11 1222111111110 000
Q ss_pred EEEeccCCCeeEEEEcCC----CCEEEEeeCCCcEEEEeCC-----CCc---EeeeeccccCCccceEEEEEc-CCCCEE
Q 021925 140 LILKGPQGRINRAVWGPL----NRTIISAGEDAIVRIWDTE-----TGK---LLKESDKETGHKKTITSLAKA-ADGSHF 206 (305)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~iwd~~-----~~~---~~~~~~~~~~~~~~v~~~~~~-~~~~~l 206 (305)
. -...+..++.+|+ ++.|.-....+. ++|.+. ... .++.+-. .+....-..++.+ .+|.++
T Consensus 217 ~----~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly 290 (381)
T 3q6k_A 217 E----FKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIF 290 (381)
T ss_dssp E----ECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEE
T ss_pred E----eccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEE
Confidence 0 1245788889987 677776655442 333332 221 1222210 1112334456775 678777
Q ss_pred EEEeCCCeEEEEEcCC-c---eEEEEEeeCC---CeeEEEecCCCCcEEEee
Q 021925 207 LTGSLDKSAKLWDART-L---ELIKTYVTER---PVNAVTMSPLLDHVCIGE 251 (305)
Q Consensus 207 ~~~~~dg~i~iwd~~~-~---~~~~~~~~~~---~v~~~~~~~~~~~l~~~~ 251 (305)
++--..+.|..|+..+ . +....+.... .+..+++.++|.+.+.++
T Consensus 291 ~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 291 FAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 7777889999999875 1 2233333222 356777777776555543
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.09 E-value=4.3 Score=38.12 Aligned_cols=38 Identities=26% Similarity=0.174 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEe
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 230 (305)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455566788899999999999999999999998865
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.91 E-value=5.6 Score=37.37 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEe
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 91 (305)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455566777899999999999999999999988876
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=83.18 E-value=5.6 Score=34.16 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEe
Q 021925 193 TITSLAKAADGSHFLTGSLD------------KSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~ 250 (305)
..-.|+|+|.|+++++-..+ ..+.+.+..+++....+. ..+.++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678999999866654322 246666777776655444 56789999999999998876
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=82.10 E-value=8.7 Score=32.77 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=43.1
Q ss_pred cceEEEEEcCCCCEEEEEeC------------CCeEEEEEcCCceEEEEEe--eCCCeeEEEecCCCCcEEEe
Q 021925 192 KTITSLAKAADGSHFLTGSL------------DKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVCIG 250 (305)
Q Consensus 192 ~~v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~ 250 (305)
.....|.|+++|.+.++... ...|..++..+++....+. ....++.++|+||++.|.++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45678999999987663221 2257777877787655554 34678999999999998887
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=81.52 E-value=12 Score=32.99 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEEEecCCCCeeEEEee
Q 021925 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (305)
Q Consensus 54 ~v~~i~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 92 (305)
.|.++.+ +..++++-+.|+++|+|++++++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 467999999999999999999998888765
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=79.16 E-value=5.5 Score=34.97 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEEEEee
Q 021925 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (305)
Q Consensus 193 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 231 (305)
.|.++.+ +..++++-+.|.++|+|++++++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 467999999999999999999999988763
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=79.08 E-value=9.6 Score=32.75 Aligned_cols=58 Identities=24% Similarity=0.150 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCEEEEeeCC----------C--ceEEEEcCCCeeeEEecCC-CcceEEEEEcCCCcEEEEE
Q 021925 13 LTYLKYNKDGDLLFSCAKD----------H--TPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITG 70 (305)
Q Consensus 13 v~~~~~~~~~~~l~s~~~d----------g--~v~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~ 70 (305)
.--|+|+|.|++++.-..+ + .+.+.+..+++..+-+.+. ..+++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999876654322 1 2344455667766555554 4689999999999877664
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=77.87 E-value=16 Score=31.21 Aligned_cols=61 Identities=21% Similarity=0.138 Sum_probs=42.0
Q ss_pred cceEEEEEcCCCCEEEEeeC------------CCceEEEEcCCCeeeEEecCC-CcceEEEEEcCCCcEEEEEe
Q 021925 11 RPLTYLKYNKDGDLLFSCAK------------DHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGS 71 (305)
Q Consensus 11 ~~v~~~~~~~~~~~l~s~~~------------dg~v~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~ 71 (305)
.....|.|.++|.+.+.... ...|..++..+++....+... ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987773221 114556666677766555543 35789999999998887653
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.74 E-value=31 Score=26.25 Aligned_cols=160 Identities=9% Similarity=0.027 Sum_probs=82.3
Q ss_pred ccceEEEEEcC-CCCEEEEeeCCCceEEEEcCCCe------eeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC
Q 021925 10 ERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (305)
Q Consensus 10 ~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~ 82 (305)
.+.|..+.... +..+++..+.+|.++...+.+-. ....++. .+.+..+....+...++..+..|.+..+...
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 34555554422 46789999999999998875432 2222332 3456666665555678888888998888653
Q ss_pred CC-------CeeE--EEeeCCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccCC-CCCceEEEEeccCCCeeEE
Q 021925 83 TG-------AQLF--TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRA 152 (305)
Q Consensus 83 ~~-------~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ 152 (305)
.- +-+. .+.....+..+...+++..++..+.. +......+...... ..++-+..+ ...+.+..+
T Consensus 146 eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~-----G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~ 219 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAK-----GRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDL 219 (276)
T ss_dssp GSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETT-----SCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEE
T ss_pred hCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCC-----CcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEE
Confidence 21 1111 12234455555555444444444332 22222222221111 112222222 223344444
Q ss_pred EEcCCCCEEEEeeCCCcEEE--EeCC
Q 021925 153 VWGPLNRTIISAGEDAIVRI--WDTE 176 (305)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~i--wd~~ 176 (305)
........++..+.+|.+.. ++..
T Consensus 220 ~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 220 IPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 33333445666777787777 7654
No 373
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=63.23 E-value=43 Score=28.08 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=42.7
Q ss_pred ceEEEEEcC----CCC--EEEEeeCCCceEEEEcC-CCe-------eeEEecC--CCcceEEEEEcCCCcEEEEEeCCCc
Q 021925 12 PLTYLKYNK----DGD--LLFSCAKDHTPTVWFAD-NGE-------RLGTYRG--HNGAVWCCDVSRDSMTLITGSADQT 75 (305)
Q Consensus 12 ~v~~~~~~~----~~~--~l~s~~~dg~v~iw~~~-~~~-------~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~ 75 (305)
..++|+... +++ .+..|+.+|.|.-.-.. .+. .+..+.- ...+|..+.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 467776653 243 56778999987543322 211 2223332 3578999999999999999988775
Q ss_pred EEE
Q 021925 76 AKL 78 (305)
Q Consensus 76 v~v 78 (305)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 374
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=55.78 E-value=76 Score=25.27 Aligned_cols=221 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred cccceEEEEEcC-C-CCEEEEeeCCCceEEEEcCCCeeeEEecC-------------------CCcceEEEEEcC-CCcE
Q 021925 9 HERPLTYLKYNK-D-GDLLFSCAKDHTPTVWFADNGERLGTYRG-------------------HNGAVWCCDVSR-DSMT 66 (305)
Q Consensus 9 h~~~v~~~~~~~-~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-------------------~~~~v~~i~~~~-~~~~ 66 (305)
+...|.++++.| + ...|.+++..+.|...+ +.++.-..+.. ....+.+|.+.| +...
T Consensus 113 ~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~ 191 (394)
T 3b7f_A 113 VVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH 191 (394)
T ss_dssp CCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC
T ss_pred cccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE
Q ss_pred EEEEeCCCcEEEEecCCCCeeEEEee--------------CCCceEEEEecC--CceEEEeCCcceeeeeeEEEEEeecc
Q 021925 67 LITGSADQTAKLWNVETGAQLFTFNF--------------DSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARD 130 (305)
Q Consensus 67 l~s~~~dg~v~vwd~~~~~~~~~~~~--------------~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (305)
|+.+..++.|...+ ..++.-..+.. ...+.++.+.|. +.+.+...............|.....
T Consensus 192 l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 192 LYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGG
T ss_pred EEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCC
Q ss_pred cCCCCCceEEEEeccCCCeeEEEEcC-CCCEEEEeeC-----------CCcEEEEeCCC-CcEeeeeccccCCccce---
Q 021925 131 PADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGE-----------DAIVRIWDTET-GKLLKESDKETGHKKTI--- 194 (305)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~~~~~~~~v--- 194 (305)
....... ..+..+.++| +...+..+.. ++...+|.... ++.-..+..........
T Consensus 271 ~l~~~~~---------~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~ 341 (394)
T 3b7f_A 271 AMPREVG---------DIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTV 341 (394)
T ss_dssp GSCTTTC---------SCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCC
T ss_pred CCCCCCc---------cceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceE
Q ss_pred --EEEEEcC-CCCEEEEEeCCCeEEEEEcCCceEEEEEeeCCCeeEEEe
Q 021925 195 --TSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (305)
Q Consensus 195 --~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 240 (305)
..++++| +...|+.++.++.|..-+-....-...-..-..+.+++|
T Consensus 342 ~~~~~~~~p~~~~~l~~g~~~g~l~~S~D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 342 KRQAMTADAHAPVGVYFGTTGGEIWASADEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp CTBSEEECCSSSCCEEEECTTSCEEEESSTTSBCEEEECSCSCEEEEEE
T ss_pred EEEEEEECCCCCCEEEEEeCCCeEEEECCCCCCceEcccCCCCeeEEEE
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=49.20 E-value=92 Score=24.29 Aligned_cols=203 Identities=9% Similarity=0.005 Sum_probs=93.3
Q ss_pred EEEEcCCCCEEEEeeCCCceEEEEcC---------CCeeeEE---ecCCCcceEEEEEcC---CCcEEEEEeCCCcEEEE
Q 021925 15 YLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGT---YRGHNGAVWCCDVSR---DSMTLITGSADQTAKLW 79 (305)
Q Consensus 15 ~~~~~~~~~~l~s~~~dg~v~iw~~~---------~~~~~~~---~~~~~~~v~~i~~~~---~~~~l~s~~~dg~v~vw 79 (305)
.+........|+..+..|.++-.... .|.++.. +. ..+.|.++...+ ++.+++.++.+|.++--
T Consensus 43 ~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt 121 (323)
T 1wp5_A 43 AMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKT 121 (323)
T ss_dssp EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEE
T ss_pred EEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEe
Confidence 33333344566666777776655432 1232211 22 234455543333 25678899999999998
Q ss_pred ecCCC------CeeEEE--eeCCCceEEEEec-CCceEEEeCCcceeeeeeEEEEEeecccCCCCCceEEEEeccCCCee
Q 021925 80 NVETG------AQLFTF--NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (305)
Q Consensus 80 d~~~~------~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (305)
.+..- +-+..+ .....+..+.... +..+++.+..+........ ++........+-....+. ....|.
T Consensus 122 ~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~---ev~~~gR~a~GV~~i~L~-~~d~Vv 197 (323)
T 1wp5_A 122 ELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDES---EVSIVGVRAAGVKGMNLK-EGDYIV 197 (323)
T ss_dssp EGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGG---GSCBCCSSCCCEECCCCC-TTCCEE
T ss_pred EHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHH---HCcccCCCCcCEEEEEeC-CCCEEE
Confidence 76421 222222 2334444444443 3344444443322211111 111111111111111222 234455
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEeCCCC-------cEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 151 RAVWGPLNR-TIISAGEDAIVRIWDTETG-------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 151 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
++..-+++. .+++.+..|..+..++..- +-+..+.........+..+....++..++..+.+|.+.-..+..
T Consensus 198 ~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 198 SGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 554444444 7888889998888777531 11222211111122344332223334456666677666555543
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=48.22 E-value=56 Score=27.77 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=42.9
Q ss_pred cceEEEEEcCCC--CEEEEeeCCCceEEEEcCCC----eeeEEec--CCCcceE-EEEEcCCCcEEEEEeCCCcEEE
Q 021925 11 RPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNG----ERLGTYR--GHNGAVW-CCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 11 ~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~~----~~~~~~~--~~~~~v~-~i~~~~~~~~l~s~~~dg~v~v 78 (305)
...++++....+ ..+..|+.+|.|.-..+... .....+. ....+|. .+.+++++.+|+.++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 357777776533 45777899998765444322 1233332 2346785 8999998889998887654443
No 377
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=46.67 E-value=88 Score=26.58 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=41.2
Q ss_pred eEEEEEcCCC--CEEEEEeCCCeEEEEEcCCc----eEEEEEe---eCCCee-EEEecCCCCcEEEeeCCcE
Q 021925 194 ITSLAKAADG--SHFLTGSLDKSAKLWDARTL----ELIKTYV---TERPVN-AVTMSPLLDHVCIGEPQTI 255 (305)
Q Consensus 194 v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~---~~~~v~-~~~~~~~~~~l~~~~~~~~ 255 (305)
.++++....+ ..+..|+.+|.|.=..+... ..+.++. .+.+|. .+.+++++.+|.+++..+.
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V 473 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQV 473 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccc
Confidence 5555554433 35778899998765554422 2233333 256885 9999999999999988875
No 378
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=45.64 E-value=1.1e+02 Score=26.14 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=47.0
Q ss_pred CceEecccc-cceEEEEEcC----CC--CEEEEeeCCCceE-EEEcCC--C-----eeeEEecC-----------CCcce
Q 021925 2 RPILMKGHE-RPLTYLKYNK----DG--DLLFSCAKDHTPT-VWFADN--G-----ERLGTYRG-----------HNGAV 55 (305)
Q Consensus 2 ~~~~l~~h~-~~v~~~~~~~----~~--~~l~s~~~dg~v~-iw~~~~--~-----~~~~~~~~-----------~~~~v 55 (305)
+|+..+... -..+.|+... ++ ..+..|+.+|.|. +..... + ..+..+.. ...+|
T Consensus 393 ~Pll~~~~~~y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI 472 (565)
T 3oky_B 393 RPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRI 472 (565)
T ss_dssp SCSEEECSSSSCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCC
T ss_pred eeEEEEcCCccceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCce
Confidence 355554433 2467887764 22 4677889999874 433221 1 12222221 14578
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEEE
Q 021925 56 WCCDVSRDSMTLITGSADQTAKLW 79 (305)
Q Consensus 56 ~~i~~~~~~~~l~s~~~dg~v~vw 79 (305)
..+.++++...|+.++.++.++|-
T Consensus 473 ~~L~ls~~~~~LYV~s~~~V~qVP 496 (565)
T 3oky_B 473 MGMQLDRASGSLYVAFSTCVIKVP 496 (565)
T ss_dssp CEEEEEGGGTEEEEECSSCEEEEE
T ss_pred EEEEEcCCCCEEEEEecCeEEEee
Confidence 899999988889988887766653
No 379
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=41.12 E-value=1.1e+02 Score=26.87 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=43.0
Q ss_pred CeeEEEEc----CCCC---EEEEeeCCCcEEEE-eCCCCc-EeeeeccccCCccceEEEEEcCCC--CEEEEEeCCCeEE
Q 021925 148 RINRAVWG----PLNR---TIISAGEDAIVRIW-DTETGK-LLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAK 216 (305)
Q Consensus 148 ~i~~~~~~----~~~~---~l~~~~~dg~i~iw-d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~ 216 (305)
..++++.. .+++ .++.|+.+|.|.-. ...... .+..+... ....+|..|.++++. ..|++++.++.++
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~-~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~ 476 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLF-QDFEPVQTLLLSSKKGNRFVYAGSNSGVVQ 476 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECC-TTCCCCCEEEECCSSSSCEEEEECSSCEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEeccc-CCCCcceeeEeccCCCccEEEEEEcCeEEE
Confidence 35666653 3333 57788899987543 433322 22222222 245688899999987 8899998887666
Q ss_pred E
Q 021925 217 L 217 (305)
Q Consensus 217 i 217 (305)
+
T Consensus 477 v 477 (663)
T 1olz_A 477 A 477 (663)
T ss_dssp E
T ss_pred E
Confidence 5
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=37.86 E-value=1.2e+02 Score=25.50 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=42.3
Q ss_pred CeeEEEEcCC----C--CEEEEeeCCCcEEEEeCC-CCc-------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCC
Q 021925 148 RINRAVWGPL----N--RTIISAGEDAIVRIWDTE-TGK-------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (305)
Q Consensus 148 ~i~~~~~~~~----~--~~l~~~~~dg~i~iwd~~-~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 213 (305)
..++++...- + ..+..|+.+|.|.-.-+. .+. .+..+... ....+|..|.++++...|..++.++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~-~~~~pI~~m~l~~~~~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF-REPTTISAMELSTKQQQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCS-SSCCCCCEEEEETTTTEEEEEBSSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeec-CCCCccceEEEcCCCCEEEEEECCe
Confidence 3566655432 3 346688889987544332 211 22223221 2357889999999999999999887
Q ss_pred eEEE
Q 021925 214 SAKL 217 (305)
Q Consensus 214 ~i~i 217 (305)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 381
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=37.43 E-value=77 Score=20.01 Aligned_cols=16 Identities=0% Similarity=-0.166 Sum_probs=11.0
Q ss_pred eEEEecCCCCcEEEee
Q 021925 236 NAVTMSPLLDHVCIGE 251 (305)
Q Consensus 236 ~~~~~~~~~~~l~~~~ 251 (305)
..+.+..+|++++...
T Consensus 59 ~~l~l~~dGNLVl~d~ 74 (113)
T 3mez_B 59 CFMRLGHSGELDITDD 74 (113)
T ss_dssp CEEEECTTSCEEEECT
T ss_pred EEEEEeCCCcEEEECC
Confidence 4567788888777643
No 382
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=35.16 E-value=1.7e+02 Score=23.31 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=35.7
Q ss_pred CCEEEEeeCCCceEEEEcCCC-----------eeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEEec
Q 021925 22 GDLLFSCAKDHTPTVWFADNG-----------ERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (305)
Q Consensus 22 ~~~l~s~~~dg~v~iw~~~~~-----------~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~ 81 (305)
....+.-..||.|+.|-.... .....+.. ....+..++++......+....||.|..|-.
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 345555567899999954321 11112221 2234555677666666677788999999954
No 383
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=35.04 E-value=1.4e+02 Score=26.21 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=36.1
Q ss_pred EEEEeeCCCcEE-EEeCCCCc-------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 160 TIISAGEDAIVR-IWDTETGK-------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 160 ~l~~~~~dg~i~-iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
.++.|+.+|.|. +.-...+. .+..+... ....+|..|.++++...|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~-~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF-REPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECS-SSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeec-CCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 466788899875 33222211 12222211 35678899999999999999998876555
No 384
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=34.91 E-value=1.6e+02 Score=22.80 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=99.6
Q ss_pred CCCCEEEEeeCCCceEEEEcCCCeee---------EEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEecC---CCCe-
Q 021925 20 KDGDLLFSCAKDHTPTVWFADNGERL---------GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE---TGAQ- 86 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~~~~~---------~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd~~---~~~~- 86 (305)
++..++++.+.+|.|+--.+.+-+.. ..++. .+.+..+........++..+..|.++-.... ....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46678889999999998876543211 11232 2445555555455567777888887766542 2110
Q ss_pred --------eEEEeeCCCceEEEEec----CCceEEEeCCcceeeeeeEEEEEeecccCC-CCCceEEEEeccCCCeeEEE
Q 021925 87 --------LFTFNFDSPARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 87 --------~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 153 (305)
...+.....+..+...+ +..+++++..+ .+....+...... ..+.....+.. .+.+..+.
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G------~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASG------KIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTS------EEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCC------eEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 01122333444443332 22333333322 1222222111111 11222222333 44555555
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCc-------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGK-------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
.......++..+.+|.+..+....-. -++.+.. .....|..+..-.++..+++.+..|..+..++..
T Consensus 158 ~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L--~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 158 IVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL--KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC--CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe--CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 55556678889999999998875311 1112211 1244566665555566788899999999998754
No 385
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=32.68 E-value=2.1e+02 Score=25.14 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=35.1
Q ss_pred EEEEEeCCCeEE-EEEcCCce-------EEEEE---eeCCCeeEEEecCCCCcEEEeeCCcEE
Q 021925 205 HFLTGSLDKSAK-LWDARTLE-------LIKTY---VTERPVNAVTMSPLLDHVCIGEPQTIK 256 (305)
Q Consensus 205 ~l~~~~~dg~i~-iwd~~~~~-------~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~ 256 (305)
.+..|+.+|.|. +.-..... .+.++ ..+.+|..+.++++.++|.+++..+..
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~ 493 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 493 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEE
Confidence 477889999864 33222111 22222 356789999999999999999988763
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=30.80 E-value=1.7e+02 Score=21.87 Aligned_cols=147 Identities=6% Similarity=0.028 Sum_probs=67.3
Q ss_pred EEEEeeCCCceEEEEcCCCee-eEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe---cCCCCe-------eEEEee
Q 021925 24 LLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN---VETGAQ-------LFTFNF 92 (305)
Q Consensus 24 ~l~s~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd---~~~~~~-------~~~~~~ 92 (305)
.+++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.+.-.. +..++. ...+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 455566777776554332110 1123322 3444444433444566667778766554 322211 011223
Q ss_pred CCCceEEEEecCCceEEEeCCcceeeeeeEEEEEeecccC-CCCCceEEEEeccCCCeeEEEEc-CCCCEEEEeeCCCcE
Q 021925 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWG-PLNRTIISAGEDAIV 170 (305)
Q Consensus 93 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i 170 (305)
...+..+....++..++.++.. +.+....+..... ...+.....++.. +.+-.+... ..+..++..+.+|.+
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~-----G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDA-----GYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTT-----SEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCC-----CeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeE
Confidence 4455555332344444444442 2222222222111 1222333333332 344444444 345678888899998
Q ss_pred EEEeCCC
Q 021925 171 RIWDTET 177 (305)
Q Consensus 171 ~iwd~~~ 177 (305)
..++...
T Consensus 157 lrf~~~e 163 (256)
T 1zvt_A 157 LMFPVSD 163 (256)
T ss_dssp EEEEGGG
T ss_pred EEEEHHH
Confidence 8888753
No 387
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=30.03 E-value=2.8e+02 Score=24.30 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=42.2
Q ss_pred ceEEEEEc----CCCC---EEEEeeCCCceEEE-EcCCCe-eeEEec--CCCcceEEEEEcCCC--cEEEEEeCCCcEEE
Q 021925 12 PLTYLKYN----KDGD---LLFSCAKDHTPTVW-FADNGE-RLGTYR--GHNGAVWCCDVSRDS--MTLITGSADQTAKL 78 (305)
Q Consensus 12 ~v~~~~~~----~~~~---~l~s~~~dg~v~iw-~~~~~~-~~~~~~--~~~~~v~~i~~~~~~--~~l~s~~~dg~v~v 78 (305)
..++|+.. .+++ .+..|+.+|.|.-. ...... .+..+. ....+|..+.++++. ..|+.++.++.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 46777763 3443 67788999987433 333322 222222 245689999999877 88888887765554
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.69 E-value=1.7e+02 Score=21.76 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=57.7
Q ss_pred CCEEEEeeCCCcEEEEeCC---C----CcEeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-------
Q 021925 158 NRTIISAGEDAIVRIWDTE---T----GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------- 223 (305)
Q Consensus 158 ~~~l~~~~~dg~i~iwd~~---~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------- 223 (305)
...++..+..|.++-.... . |.++...-.. .....|.++....++..|+.++..|.++...+...
T Consensus 44 ~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L-~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G 122 (256)
T 1zvt_A 44 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL-PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG 122 (256)
T ss_dssp TSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC-CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC
T ss_pred CCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc
Confidence 4456667777876655432 1 2222221111 23456666654345667889999999999987543
Q ss_pred eEEEEEeeCCCeeEEEec-CCCCcEEEeeCCcEEEEEEe
Q 021925 224 ELIKTYVTERPVNAVTMS-PLLDHVCIGEPQTIKFMLLV 261 (305)
Q Consensus 224 ~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~ 261 (305)
.....+.....+..+... ..+..++..+.++..+.+.+
T Consensus 123 ~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 123 KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred eEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 222233333455555454 34456777777777544433
No 389
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=29.17 E-value=2.2e+02 Score=24.50 Aligned_cols=57 Identities=7% Similarity=0.030 Sum_probs=36.4
Q ss_pred EEEEeeCCCcEEEEeCCC-C----c-EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEE
Q 021925 160 TIISAGEDAIVRIWDTET-G----K-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (305)
Q Consensus 160 ~l~~~~~dg~i~iwd~~~-~----~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 217 (305)
.+..|+.+|.|.-.-... + . .+..+... ....+|..|.++++...|+.++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~-~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPF-RRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCC-SSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeecc-CCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 566888899876443322 2 1 12222211 24568899999999889998887776655
No 390
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=28.97 E-value=1.5e+02 Score=25.18 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=41.9
Q ss_pred ceEEEEEcC-CC-CEEEEeeCCCceEEEEcC-CCe--eeEEec-CCCcce-EEEEEcCCCcEEEEEeCCCcEEE
Q 021925 12 PLTYLKYNK-DG-DLLFSCAKDHTPTVWFAD-NGE--RLGTYR-GHNGAV-WCCDVSRDSMTLITGSADQTAKL 78 (305)
Q Consensus 12 ~v~~~~~~~-~~-~~l~s~~~dg~v~iw~~~-~~~--~~~~~~-~~~~~v-~~i~~~~~~~~l~s~~~dg~v~v 78 (305)
..++|+... +| ..+..|+.+|.|.-.-.. ++. .+..+. ....+| ..+.++++...|+.++.++.++|
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 477777655 33 356678889988644332 211 222222 345677 48999998888988888766555
No 391
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=28.21 E-value=2.2e+02 Score=24.51 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=42.2
Q ss_pred ceEEEEEc----CCC---CEEEEeeCCCceEEEEcCC-C----e-eeEEec--CCCcceEEEEEcCCCcEEEEEeCCCcE
Q 021925 12 PLTYLKYN----KDG---DLLFSCAKDHTPTVWFADN-G----E-RLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTA 76 (305)
Q Consensus 12 ~v~~~~~~----~~~---~~l~s~~~dg~v~iw~~~~-~----~-~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~v 76 (305)
..+.++.. .++ ..+..|+.+|.|.-.-... + . .+..+. ....+|..+.++++...|+.++.++.+
T Consensus 363 ~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~ 442 (590)
T 3nvq_A 363 HYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVS 442 (590)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEE
T ss_pred cEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEE
Confidence 35566543 344 3667788899876433222 2 1 122232 245689999999988889888887655
Q ss_pred EEE
Q 021925 77 KLW 79 (305)
Q Consensus 77 ~vw 79 (305)
+|-
T Consensus 443 qVP 445 (590)
T 3nvq_A 443 QVP 445 (590)
T ss_dssp EEE
T ss_pred Ecc
Confidence 553
No 392
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.26 E-value=2.1e+02 Score=21.97 Aligned_cols=194 Identities=8% Similarity=0.012 Sum_probs=95.5
Q ss_pred CCCCEEEEeeCCCceEEEEcCCCeeeE---------EecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe---cCCCC--
Q 021925 20 KDGDLLFSCAKDHTPTVWFADNGERLG---------TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN---VETGA-- 85 (305)
Q Consensus 20 ~~~~~l~s~~~dg~v~iw~~~~~~~~~---------~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd---~~~~~-- 85 (305)
|+...+++.+.+|.|+--.+.+-+... .++. .+.+..+........|+..+..|.+.-.. +....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 455678888999999877654422111 1222 23444444444455666677778765554 33221
Q ss_pred ----eeE---EEeeCCCceEEEEe---cCCceEEEeCCcceeeeeeEEEEEeecccCC-CCCceEEEEeccCCCeeEEEE
Q 021925 86 ----QLF---TFNFDSPARSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVW 154 (305)
Q Consensus 86 ----~~~---~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~ 154 (305)
.+. .+.....+..+... +++..++..+. .+.+....+...... ..+.....+..+ +.+..+..
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~-----~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA-----NGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEET-----TSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeC-----CCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEE
Confidence 110 12234445555432 23333333332 122222222211111 112222223333 45555555
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCc-------EeeeeccccCCccceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 021925 155 GPLNRTIISAGEDAIVRIWDTETGK-------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 155 ~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 222 (305)
......++..+.+|.+..++...-. -++.+.. .....|.++...+++..+++.+..|.++-.++..
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL--GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe--CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 4555678888889988888764311 1111111 1345566666555566788999999999887743
No 393
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.48 E-value=2.4e+02 Score=22.38 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCceEEEEcCCC-----------eeeEEecC-CCcceEEEEEcCCCcEEEEEeCCCcEEEE
Q 021925 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-----------ERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (305)
Q Consensus 12 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~-----------~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~v~vw 79 (305)
.+..++.+.-....+.-..||.|+.|-.... .....+.. ....|..++.. ....+....||.|..|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 3455666666667777788999999954321 11112221 12356666654 3345556678999999
Q ss_pred ec
Q 021925 80 NV 81 (305)
Q Consensus 80 d~ 81 (305)
-.
T Consensus 184 G~ 185 (389)
T 3kci_A 184 GK 185 (389)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 394
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=25.47 E-value=2.8e+02 Score=23.73 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=42.8
Q ss_pred CeeEEEEcC----CC--CEEEEeeCCCcEE-EEeCCCC-------cEeeeeccccC--------CccceEEEEEcCCCCE
Q 021925 148 RINRAVWGP----LN--RTIISAGEDAIVR-IWDTETG-------KLLKESDKETG--------HKKTITSLAKAADGSH 205 (305)
Q Consensus 148 ~i~~~~~~~----~~--~~l~~~~~dg~i~-iwd~~~~-------~~~~~~~~~~~--------~~~~v~~~~~~~~~~~ 205 (305)
..+.++... ++ ..++.|+.+|.|. +...... ..+..+..... ...+|..|.++++...
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 356777664 23 3566889999875 3332211 12222221110 2457889999999899
Q ss_pred EEEEeCCCeEEEE
Q 021925 206 FLTGSLDKSAKLW 218 (305)
Q Consensus 206 l~~~~~dg~i~iw 218 (305)
|++++.++.+++-
T Consensus 484 LYV~s~~~V~qVP 496 (565)
T 3oky_B 484 LYVAFSTCVIKVP 496 (565)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEEecCeEEEee
Confidence 9999988766653
No 395
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=25.33 E-value=1.5e+02 Score=26.08 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred CceEecccccceEEEEEcC--CCCEEEEeeCCCceEEEEcCC----CeeeEEecCC--Ccce-EEEEEcCCCcEEEEEeC
Q 021925 2 RPILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADN----GERLGTYRGH--NGAV-WCCDVSRDSMTLITGSA 72 (305)
Q Consensus 2 ~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~----~~~~~~~~~~--~~~v-~~i~~~~~~~~l~s~~~ 72 (305)
+|+..+. ....++++... +-..+..|+.+|.|.-.-+.. ...+..+... ..+| ..+.++++...|+.++.
T Consensus 391 ~Pll~~~-~~~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~ 469 (681)
T 3oky_A 391 LTLYTTS-RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSE 469 (681)
T ss_dssp EEEEEES-SSCBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECS
T ss_pred cceEEec-CcceEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEec
Q ss_pred CCcEEE
Q 021925 73 DQTAKL 78 (305)
Q Consensus 73 dg~v~v 78 (305)
++.++|
T Consensus 470 ~~V~qv 475 (681)
T 3oky_A 470 RQVTRV 475 (681)
T ss_dssp SEEEEE
T ss_pred CEEEEE
No 396
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}
Probab=23.39 E-value=2.9e+02 Score=22.10 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=48.5
Q ss_pred cCCCCEEEEee-CCC--cEEEEeCCCCcEeeeecccc-CCc--cce-EEEEEcCCCCEEEEEeCCCeEEEEEcCCceEEE
Q 021925 155 GPLNRTIISAG-EDA--IVRIWDTETGKLLKESDKET-GHK--KTI-TSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (305)
Q Consensus 155 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~-~~~--~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 227 (305)
+++.++|+.-. ... .|.++|+.+++..+.+.... |.. +.+ .++.......+++++-....|.+.|.+ |+.+.
T Consensus 36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~-G~~~~ 114 (369)
T 3s9j_A 36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQ-GEIIR 114 (369)
T ss_dssp ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTT-CCEEE
T ss_pred cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCC-ceEEE
Confidence 44445665444 456 89999999999887775332 221 134 345555666777776666778888865 66666
Q ss_pred EEe
Q 021925 228 TYV 230 (305)
Q Consensus 228 ~~~ 230 (305)
.+.
T Consensus 115 k~~ 117 (369)
T 3s9j_A 115 NYN 117 (369)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 397
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=21.60 E-value=3.1e+02 Score=21.86 Aligned_cols=195 Identities=9% Similarity=0.038 Sum_probs=100.4
Q ss_pred cCCCCEEEEeeCCCceEEEEcCC---------CeeeEEecCCCcceEEEEEcCCCcEEEEEeCCCcEEEEe---cCCC--
Q 021925 19 NKDGDLLFSCAKDHTPTVWFADN---------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN---VETG-- 84 (305)
Q Consensus 19 ~~~~~~l~s~~~dg~v~iw~~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~v~vwd---~~~~-- 84 (305)
-|+..++++.+.+|.|+--.+.+ +..-..++ ..+.+..+........|+..+..|.+.-+. +...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778999999999999765432 12223344 345666665555556677677778766554 3221
Q ss_pred ----CeeE---EEeeCCCceEEEEec---CCceEEEeCCcceeeeeeEEEEEeecccCC-CCCceEEEEeccCCCeeEEE
Q 021925 85 ----AQLF---TFNFDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAV 153 (305)
Q Consensus 85 ----~~~~---~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 153 (305)
..+. .+.....|..+...+ .+..++..+.. +.++...+...... ..+.....+.. .+.+-.+.
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-----G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~ 156 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN-----GTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVA 156 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-----SEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEE
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-----CeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEE
Confidence 1111 122344555554432 23344444432 22222222221111 11222222333 33444444
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCcE-------eeeeccccCCccceEEEEEcC-------------------------
Q 021925 154 WGPLNRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTITSLAKAA------------------------- 201 (305)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~------------------------- 201 (305)
.......++..+.+|.+..++...-.. ++-+.. .....|.++...+
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~ 234 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL--AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAE 234 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEEECCC-----------------------
T ss_pred EeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe--CCCCEEEEEEEecccccccccccccccccccccccccc
Confidence 445556788888889888887542111 111111 1234455554433
Q ss_pred ----------CCCEEEEEeCCCeEEEEEcCC
Q 021925 202 ----------DGSHFLTGSLDKSAKLWDART 222 (305)
Q Consensus 202 ----------~~~~l~~~~~dg~i~iwd~~~ 222 (305)
++..+++.+..|..+...+..
T Consensus 235 ~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 235 PAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ------------CEEEEEETTSEEEEEEGGG
T ss_pred ccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 445789999999999888754
Done!