BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021926
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 267 bits (682), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 138/288 (47%), Positives = 189/288 (65%), Gaps = 9/288 (3%)
Query: 16 FLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVS-KYRGLMGTVVTIAREEGLW 74
FL + AAC A+L T PLDTAKVRLQ+Q ++ + S +YRG++GT++T+ R EG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 75 ALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLV-GSDFVGDIPLYQKIFAALLTGAIAIVV 133
+L+NG++AGL RQ + +RIGLYD VK F GS+ G + ++ A TGA+A+ V
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSRLLAGSTTGALAVAV 121
Query: 134 ANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNA 193
A PTD+VKVR QA+ + G RRY ++AY TI R+EG+ LW G PN+ARNAIVN
Sbjct: 122 AQPTDVVKVRFQAQARAGGG--RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 194 AELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVKSRMMGDS--AYK 251
AEL +YD +K+T+LK TD++ H + GAG I SP+DVVK+R M + Y
Sbjct: 180 AELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH 239
Query: 252 NTVDCFIKTLKYEGFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVFI 299
+ C + L+ EG AFYKGF+P+F RLGSWNV+MF+T EQ K+ +
Sbjct: 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 119 KIFAALLTGAIAIVVANPTDLVKVRLQAEGK----LPSGVPRRYYGALDAYCTIVRQEGL 174
K A IA ++ P D KVRLQ +G+ + + +Y G L T+VR EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 175 GALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIG 234
+L+ GL + R + + YD VK+ K I + +LAG G AV +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAVAVA 122
Query: 235 SPIDVVKSRMM------GDSAYKNTVDCFIKTLKYEGFLAFYKGFLPNFSRLGSWNVIMF 288
P DVVK R G Y++TV+ + + EG +KG PN +R N
Sbjct: 123 QPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182
Query: 289 LTLEQAKKVFIR 300
+T + K ++
Sbjct: 183 VTYDLIKDTLLK 194
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 122/283 (43%), Gaps = 21/283 (7%)
Query: 10 ISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAR 69
+SF + FL AA ++ P++ K+ LQ+Q AS + +Y+G++ VV I +
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH--ASKQISAEKQYKGIIDCVVRIPK 62
Query: 70 EEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALL---- 125
E+G + W G +A + R L D K +G V + + FA L
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAGNLASGG 120
Query: 126 -TGAIAIVVANPTDLVKVRLQAE-GKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGP 183
GA ++ P D + RL A+ GK R + G + I + +GL L+ G
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178
Query: 184 NIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVKSR 243
++ I AA YD K +L P I + ++A + A + P D V+ R
Sbjct: 179 SVQGIIIYRAAYFGVYDTAK-GMLPDPKNVHIIVSWMIAQTVTAV-AGLVSYPFDTVRRR 236
Query: 244 MM-------GDSAYKNTVDCFIKTLKYEGFLAFYKGFLPNFSR 279
MM D Y TVDC+ K K EG AF+KG N R
Sbjct: 237 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 221 LAGLGAGLFAVCIGSPIDVVK---------SRMMGDSAYKNTVDCFIKTLKYEGFLAFYK 271
LAG A + +PI+ VK ++ + YK +DC ++ K +GFL+F++
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 272 GFLPNFSRLGSWNVIMFLTLEQAKKVFI 299
G L N R + F ++ K++F+
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYKQIFL 99
>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
Length = 403
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 125 LTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPN 184
LTG +A + +PT K L AEGK P+ + A+DA T V+++ + LG N
Sbjct: 165 LTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENLGDN 224
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 240 VKSRMMGDSAYKNTVDCFI----KTLKYEGFLAFYKGF 273
+S M D AYKNTV+C KT+ +G LA Y
Sbjct: 268 TESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSL 305
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 90 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 145
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 90 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 145
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter
Length = 524
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 216 IFTHILAGLGAGLFAVCIGS-PIDVVKSRMMGD-------SAYKNTVDCFIKTLKYEGFL 267
IF H + G GLF + +GS I + S MGD S + D F T+ + F
Sbjct: 104 IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF 163
Query: 268 A 268
A
Sbjct: 164 A 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,871,199
Number of Sequences: 62578
Number of extensions: 370089
Number of successful extensions: 1197
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 11
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)