Query 021926
Match_columns 305
No_of_seqs 182 out of 1964
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 11:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 5.3E-59 1.8E-63 399.0 26.2 283 14-300 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.4E-58 8.2E-63 394.1 27.7 285 8-298 3-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 4.4E-37 1.5E-41 262.4 20.2 188 114-301 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 5.7E-37 1.9E-41 262.3 18.9 182 119-301 4-195 (303)
5 3tgu_G UQCRQ, mitochondrial ub 63.2 7.8 0.00027 25.0 3.4 38 265-302 33-70 (81)
6 1pp9_G Ubiquinol-cytochrome C 53.2 14 0.00049 23.8 3.4 38 265-302 33-70 (81)
7 3f2e_A SIRV coat protein; four 46.3 7.4 0.00025 24.5 1.1 36 245-280 2-42 (100)
8 3cx5_H Cytochrome B-C1 complex 34.8 50 0.0017 21.8 3.8 37 264-300 42-78 (93)
9 3vjj_A P9-1; 3.00A {Rice black 22.7 46 0.0016 26.8 2.3 36 228-266 273-308 (368)
10 2acm_A Mucin-1; auto-catalytic 14.7 23 0.00077 21.1 -0.8 20 58-77 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.3e-59 Score=398.97 Aligned_cols=283 Identities=47% Similarity=0.807 Sum_probs=252.6
Q ss_pred HHHHHhhHHHHHhhhhhccHHHHHHHHHhccccCCC-CCCCccccCCHHHHHHHHHhhhchhHhhcchHHHHHHHhhhcc
Q 021926 14 QTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASG-DGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIYGG 92 (305)
Q Consensus 14 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~ 92 (305)
..+++|++||+++.++++|+|++|+|+|++...... .......++++++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368899999999999999999999999998543100 0011246889999999999999999999999999999999999
Q ss_pred eeeeccHHHHhhhccCCCCCCCcHHHHHHHHHHHhHhhhhhcchHHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHhh
Q 021926 93 LRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQE 172 (305)
Q Consensus 93 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~ 172 (305)
++|.+||.+++.+.+... ..+....+++|++||+++.++++|+|+||+|+|++... .....|.++++++++|+++|
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhc
Confidence 999999999999865421 35678899999999999999999999999999998542 22347899999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHhhHHHhHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhcccHHHHHHHhcCC--CCC
Q 021926 173 GLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVKSRMMGD--SAY 250 (305)
Q Consensus 173 G~~~ly~G~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~i~~r~q~~--~~~ 250 (305)
|+++||||+.++++++++..+++|.+||.+++.+.+....+.+....+++|++||++++++++|+|+||+|+|.+ ..|
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y 238 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999998876554556778899999999999999999999999999997 459
Q ss_pred CCHHHHHHHHHHhhcccccccchhhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 021926 251 KNTVDCFIKTLKYEGFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVFIR 300 (305)
Q Consensus 251 ~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 300 (305)
.++++|+++++++||++|||||+.++++|.+|.+++.|.+||.+|+.+.+
T Consensus 239 ~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987754
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.4e-58 Score=394.08 Aligned_cols=285 Identities=26% Similarity=0.398 Sum_probs=244.8
Q ss_pred cchhhHHHHHHhhHHHHHhhhhhccHHHHHHHHHhccccCCCCCCCccccCCHHHHHHHHHhhhchhHhhcchHHHHHHH
Q 021926 8 PEISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQ 87 (305)
Q Consensus 8 ~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~ 87 (305)
++++.+..+++|++||+++.++++|+|++|+|+|++..... ......|+++++++++++++||++|||||+.+++++.
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 80 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ--ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY 80 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS--CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc--cccccccccHHHHHHHHHhccchhheecccHHHHHHH
Confidence 45678889999999999999999999999999999864321 1123478999999999999999999999999999999
Q ss_pred hhhcceeeeccHHHHhhhccC-CCCCC--CcHHHHHHHHHHHhHhhhhhcchHHHHHHHHHhcCCCCCCCCCCcCCHHHH
Q 021926 88 CIYGGLRIGLYDPVKTFLVGS-DFVGD--IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDA 164 (305)
Q Consensus 88 ~~~~~~~f~~~~~~~~~~~~~-~~~~~--~~~~~~~~~g~~ag~~~~~v~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~ 164 (305)
++..+++|.+||.+++.+.+. +.... ......+++|++||+++.++++|+|+||+|+|++.... .....|.+++++
T Consensus 81 ~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~ 159 (297)
T 1okc_A 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNC 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHH
Confidence 999999999999999954322 21111 23467899999999999999999999999999985321 223478999999
Q ss_pred HHHHHHhhhhhhhhhcchHHHHHHHHHHhhHHHhHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhcccHHHHHHHh
Q 021926 165 YCTIVRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVKSRM 244 (305)
Q Consensus 165 ~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~i~~r~ 244 (305)
+++|+++||++|||||+.++++++++..+++|.+||.+++.+.+. .+.+....+++|++||++++++++|+|+||+|+
T Consensus 160 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~ 237 (297)
T 1okc_A 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237 (297)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999999999999999999999999999999976543 234677889999999999999999999999999
Q ss_pred cCCC-------CCCCHHHHHHHHHHhhcccccccchhhhhHhHHHHHHHHHHHHHHHHHHh
Q 021926 245 MGDS-------AYKNTVDCFIKTLKYEGFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVF 298 (305)
Q Consensus 245 q~~~-------~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 298 (305)
|.+. .|.++++|+++|+++||++|||||+.++++|. +..++.|.+||.+|+++
T Consensus 238 q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9873 58999999999999999999999999999995 57899999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.4e-37 Score=262.44 Aligned_cols=188 Identities=21% Similarity=0.368 Sum_probs=165.0
Q ss_pred CcHHHHHHHHHHHhHhhhhhcchHHHHHHHHHhcCCCC-CCCCCCcCCHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHH
Q 021926 114 IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLP-SGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVN 192 (305)
Q Consensus 114 ~~~~~~~~~g~~ag~~~~~v~~Pld~vk~r~q~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~ 192 (305)
.+....+++|.+||+++.++++|+|+||+|+|++.... ......|.++++++++++++||+++||||+.++++++++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35678899999999999999999999999999985321 11234789999999999999999999999999999999999
Q ss_pred hhHHHhHHHHHHHHhcCCCC-CC---hHHHHHHHHHHHHHHHHHhcccHHHHHHHhcCC-------CCCCCHHHHHHHHH
Q 021926 193 AAELASYDQVKETILKIPGF-TD---NIFTHILAGLGAGLFAVCIGSPIDVVKSRMMGD-------SAYKNTVDCFIKTL 261 (305)
Q Consensus 193 ~~~~~~y~~~~~~~~~~~~~-~~---~~~~~~~~~~~a~~~~~~~~~Pld~i~~r~q~~-------~~~~~~~~~~~~i~ 261 (305)
+++|.+||.+++.+...... +. .....+++|++||+++.++++|+|+||+|+|.+ ..|.++++|+++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999965432222 11 346789999999999999999999999999986 25889999999999
Q ss_pred HhhcccccccchhhhhHhHHHHHHHHHHHHHHHHHHhhhh
Q 021926 262 KYEGFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVFIRE 301 (305)
Q Consensus 262 ~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 301 (305)
++||++|||||+.++++|.+|..++.|.+||.+|+.+.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.7e-37 Score=262.31 Aligned_cols=182 Identities=30% Similarity=0.464 Sum_probs=165.3
Q ss_pred HHHHHHHHhHhhhhhcchHHHHHHHHHhcCCCCC----CCCCCcCCHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHhh
Q 021926 119 KIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPS----GVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAA 194 (305)
Q Consensus 119 ~~~~g~~ag~~~~~v~~Pld~vk~r~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~ 194 (305)
.+++|.+||+++.++++|+|+||+|+|++..... .....|.++++++++|+++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999864211 113478999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhcccHHHHHHHhcCCC------CCCCHHHHHHHHHHhhcccc
Q 021926 195 ELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVKSRMMGDS------AYKNTVDCFIKTLKYEGFLA 268 (305)
Q Consensus 195 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~i~~r~q~~~------~~~~~~~~~~~i~~~~G~~~ 268 (305)
+|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|.+. .|.++++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 99999999999875422 467788999999999999999999999999999874 68999999999999999999
Q ss_pred cccchhhhhHhHHHHHHHHHHHHHHHHHHhhhh
Q 021926 269 FYKGFLPNFSRLGSWNVIMFLTLEQAKKVFIRE 301 (305)
Q Consensus 269 ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 301 (305)
||||+.++++|.+|..++.|.+||.+|+.+.+.
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988654
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=63.22 E-value=7.8 Score=25.05 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=29.9
Q ss_pred cccccccchhhhhHhHHHHHHHHHHHHHHHHHHhhhhc
Q 021926 265 GFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVFIREV 302 (305)
Q Consensus 265 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 302 (305)
|+-..+|-+..+++.++|+.++.+.+|++.++....-.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666778889999999999999999988775443
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=53.21 E-value=14 Score=23.77 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=31.3
Q ss_pred cccccccchhhhhHhHHHHHHHHHHHHHHHHHHhhhhc
Q 021926 265 GFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVFIREV 302 (305)
Q Consensus 265 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 302 (305)
|+...+|-+..+++.++|+.++.+.+|++.++......
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 56667777888888999999999999999998875543
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=46.31 E-value=7.4 Score=24.52 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=24.7
Q ss_pred cCC-CCCCCHHHHHHHHHHhhcc----cccccchhhhhHhH
Q 021926 245 MGD-SAYKNTVDCFIKTLKYEGF----LAFYKGFLPNFSRL 280 (305)
Q Consensus 245 q~~-~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~ 280 (305)
|.+ +++.++.+-+..++.+-|+ +++|.|+...+.|.
T Consensus 2 qtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 2 QTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp ------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 444 5667777777788888887 56999999988874
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=34.79 E-value=50 Score=21.84 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=31.4
Q ss_pred hcccccccchhhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 021926 264 EGFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVFIR 300 (305)
Q Consensus 264 ~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 300 (305)
.|+-..+|-+..+++.++|+.++...+|++.++....
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 3677788888889999999999999999998887644
No 9
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=22.69 E-value=46 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=25.8
Q ss_pred HHHHHhcccHHHHHHHhcCCCCCCCHHHHHHHHHHhhcc
Q 021926 228 LFAVCIGSPIDVVKSRMMGDSAYKNTVDCFIKTLKYEGF 266 (305)
Q Consensus 228 ~~~~~~~~Pld~i~~r~q~~~~~~~~~~~~~~i~~~~G~ 266 (305)
.++++-.||||.+|-.++.- .++...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl---istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL---ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC---CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh---ccChHHHHHHHHhcCc
Confidence 45677789999999888754 2334566777777774
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=14.68 E-value=23 Score=21.11 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHhhhchhHhh
Q 021926 58 RGLMGTVVTIAREEGLWALW 77 (305)
Q Consensus 58 ~~~~~~~~~i~~~~G~~~ly 77 (305)
+++...+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35667788888998887774
Done!