BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021929
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 26 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADA---IRIGR 82
L+DY R+S + GF+L LSGGADSS+ A V + +KE+ K++ +
Sbjct: 294 LFDYXRKSRSKGFVLSLSGGADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFDLPA 353
Query: 83 YANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 142
+ F ++++ T + + NS ET AK LA+ IG+ + S+D + +
Sbjct: 354 LQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYK 413
Query: 143 SLFQTLTGKRPRYKLDEVDMGMTYEELSVYGR 174
+ + + + ++ D++ T + + GR
Sbjct: 414 ATIENVIERPLTWEKDDI----TLQNIQARGR 441
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 199 TPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 234
T +E VK FF+ +SIN+ K L PS+H + ++
Sbjct: 566 TKNEFKYWVKKFFRLWSINQWKRERLAPSFHXDDFN 601
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi
And Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi
And Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAN 68
+L DY++++GA GF+L +SGG DS+ + G + QL V+EI N
Sbjct: 29 FLKDYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVEEIRN 68
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 30/128 (23%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 84
+L Y++++GA GF+L +SGG DS+ + G + QL V+ I R
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVESI---------------REE 68
Query: 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 144
G+ A+ I + G++ + ++ A K SW D I + VSAF
Sbjct: 69 GGD--------AQFIAVRLPHGTQQDEDDAQL-ALKFIKPDKSWKFD--IKSTVSAFSDQ 117
Query: 145 FQTLTGKR 152
+Q TG +
Sbjct: 118 YQQETGDQ 125
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 28 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGE 87
DY+ ++G G ++ LSGG DS+ V L V A G E+V+A + RY G
Sbjct: 293 DYIGKNGFPGAIIGLSGGVDSALV---------LAVAVDALGAERVRA-VMMPSRYTAGI 342
Query: 88 FPTESREFAKRI 99
T++ + A+R+
Sbjct: 343 STTDAADMARRV 354
>pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
Length = 249
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADS---SSVAAIVGCMCQLVVKEIANGDEQVKADAIRIG 81
WL D A GF++ LSGG DS +S+A G ++ N Q DA+ +
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQDALELI 78
Query: 82 RYANGEFPTESREFAKRIFYTVFMGSENS 110
N E T S + A Y F+ S S
Sbjct: 79 EMLNIEHYTISIQPA----YEAFLASTQS 103
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI 66
++ DYLR +G +L +SGG DSS+ G + QL V+ +
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDSST----AGRLAQLAVERL 73
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 25 WLWDYL----RRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANG 69
+L D+L ++ G + LSGG DS A+VG +CQ V KE A+
Sbjct: 11 YLCDFLEKEVQKRGFKKVVYGLSGGLDS----AVVGVLCQKVFKENAHA 55
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
Length = 257
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 26 LWDYLRRSGASGFLLPLSGGADSSSVA 52
+ +++R G +G ++ +SGG DS++VA
Sbjct: 13 ILEFIREKGNNGVVIGISGGVDSATVA 39
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 112 QETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEV 160
Q T A++LA EI + + ++ F +FQ L+GKR Y L E+
Sbjct: 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKF-GIFQLLSGKREGYTLQEI 56
>pdb|2UUR|A Chain A, N-Terminal Nc4 Domain Of Collagen Ix
Length = 245
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 178 IFHCGPVSMFKNLCYRWGARLTPSEVAEK 206
+ HC P+ + C+ AR+TPS+ ++
Sbjct: 216 LIHCDPLRPRRETCHELPARITPSQTTDE 244
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 15 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANG----- 69
+EE+ L Y+ ++G L+ LSGG DS+ VAAI C + + G
Sbjct: 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA---CDALGAQNVYGVSMPS 362
Query: 70 ---DEQVKADAIRIGRYANGEFPTESRE--FAKRIFYTVFMGSENSSQETRMRAKKL 121
+ K DA + R F T S E F + G + ++R+R L
Sbjct: 363 KYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTL 419
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 45 GADSSSVAAIVGCMCQLVVKEIANGDEQV-------------KADAIRIGRYANGEFPT 90
GA+S A + G C + +KE DE++ DA+ RYANG+ PT
Sbjct: 434 GANSLLDAVVFGRACSINIKEELKPDEKIPELPEGAGEESIANLDAV---RYANGDVPT 489
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,666,656
Number of Sequences: 62578
Number of extensions: 345879
Number of successful extensions: 807
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 17
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)