Query 021929
Match_columns 305
No_of_seqs 354 out of 1913
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2303 Predicted NAD synthase 100.0 2E-102 5E-107 763.0 23.2 270 2-272 316-701 (706)
2 PLN02339 NAD+ synthase (glutam 100.0 3.4E-74 7.4E-79 597.0 26.5 267 3-269 316-697 (700)
3 PRK02628 nadE NAD synthetase; 100.0 1.5E-29 3.2E-34 262.9 18.5 216 5-257 322-637 (679)
4 PF02540 NAD_synthase: NAD syn 100.0 3.1E-29 6.7E-34 231.6 14.9 158 19-223 2-241 (242)
5 PRK13981 NAD synthetase; Provi 100.0 4.8E-28 1E-32 245.1 17.1 187 13-253 258-537 (540)
6 PRK13980 NAD synthetase; Provi 99.9 4E-27 8.6E-32 219.4 16.6 172 14-232 9-261 (265)
7 cd00553 NAD_synthase NAD+ synt 99.9 1.8E-25 3.9E-30 205.9 15.5 161 14-221 2-248 (248)
8 PRK00768 nadE NAD synthetase; 99.9 7.8E-25 1.7E-29 205.3 14.2 162 12-227 15-265 (268)
9 COG0171 NadE NAD synthase [Coe 99.9 1.4E-24 2.9E-29 203.7 14.4 167 13-231 3-259 (268)
10 PTZ00323 NAD+ synthase; Provis 99.9 1.8E-22 3.9E-27 191.7 16.0 103 11-145 22-124 (294)
11 TIGR00552 nadE NAD+ synthetase 99.9 2.5E-21 5.5E-26 178.7 15.0 156 16-228 3-243 (250)
12 PRK00876 nadE NAD synthetase; 99.9 6.4E-21 1.4E-25 183.4 16.8 94 13-142 10-104 (326)
13 PF03054 tRNA_Me_trans: tRNA m 99.6 1.2E-15 2.6E-20 148.6 6.5 111 36-185 1-138 (356)
14 COG0482 TrmU Predicted tRNA(5- 99.5 1.6E-14 3.4E-19 140.2 7.2 107 35-179 3-132 (356)
15 PRK14665 mnmA tRNA-specific 2- 99.2 3.4E-11 7.3E-16 117.7 7.0 103 36-176 6-126 (360)
16 KOG2805 tRNA (5-methylaminomet 99.1 1.3E-10 2.8E-15 111.0 8.1 105 35-177 5-135 (377)
17 PRK14664 tRNA-specific 2-thiou 99.0 3.3E-10 7.1E-15 110.9 7.0 100 36-176 6-121 (362)
18 TIGR00420 trmU tRNA (5-methyla 99.0 4.3E-10 9.3E-15 109.6 7.6 102 37-176 2-130 (352)
19 cd01998 tRNA_Me_trans tRNA met 99.0 7.5E-10 1.6E-14 107.5 8.1 103 37-177 1-127 (349)
20 PRK00143 mnmA tRNA-specific 2- 99.0 7.6E-10 1.6E-14 107.5 7.2 102 37-176 2-129 (346)
21 TIGR00268 conserved hypothetic 98.9 7.8E-09 1.7E-13 95.9 11.0 76 25-140 4-79 (252)
22 PRK02628 nadE NAD synthetase; 98.8 8.1E-10 1.8E-14 115.7 1.8 79 157-236 559-653 (679)
23 PRK04527 argininosuccinate syn 98.8 1.1E-08 2.5E-13 101.2 9.0 101 36-174 3-120 (400)
24 COG1606 ATP-utilizing enzymes 98.8 1.3E-08 2.9E-13 95.1 8.6 75 25-138 9-83 (269)
25 PLN02347 GMP synthetase 98.8 2.8E-08 6E-13 101.9 11.1 79 23-138 216-296 (536)
26 TIGR00884 guaA_Cterm GMP synth 98.7 5.8E-08 1.3E-12 93.3 10.2 77 22-138 6-83 (311)
27 PRK00509 argininosuccinate syn 98.7 5.1E-08 1.1E-12 96.7 9.3 101 35-174 2-120 (399)
28 PRK13820 argininosuccinate syn 98.7 1E-07 2.2E-12 94.5 10.0 102 35-174 2-120 (394)
29 PRK00074 guaA GMP synthase; Re 98.6 1.4E-07 3.1E-12 96.1 9.8 82 17-138 200-282 (511)
30 TIGR00364 exsB protein. This p 98.6 1.2E-07 2.7E-12 84.5 7.9 62 38-137 1-62 (201)
31 cd01990 Alpha_ANH_like_I This 98.6 1.7E-07 3.8E-12 83.2 8.5 64 38-138 1-64 (202)
32 PRK00919 GMP synthase subunit 98.6 3.4E-07 7.5E-12 88.0 10.1 82 16-138 5-86 (307)
33 cd01996 Alpha_ANH_like_III Thi 98.6 4.4E-07 9.5E-12 77.1 9.4 70 37-143 3-73 (154)
34 PF00733 Asn_synthase: Asparag 98.5 3.6E-07 7.8E-12 81.8 8.9 66 34-136 16-81 (255)
35 cd01997 GMP_synthase_C The C-t 98.5 3.4E-07 7.4E-12 87.5 9.0 65 37-138 1-66 (295)
36 PRK11106 queuosine biosynthesi 98.5 3E-07 6.4E-12 85.1 8.2 64 36-137 2-66 (231)
37 cd01991 Asn_Synthase_B_C The C 98.4 6.4E-07 1.4E-11 82.0 8.3 64 36-136 16-79 (269)
38 TIGR03573 WbuX N-acetyl sugar 98.4 1.3E-06 2.8E-11 84.8 10.7 72 28-136 50-123 (343)
39 COG0603 Predicted PP-loop supe 98.4 6.7E-07 1.5E-11 82.4 8.1 67 35-139 2-68 (222)
40 PF06508 QueC: Queuosine biosy 98.4 8.3E-07 1.8E-11 80.8 8.2 65 37-139 1-66 (209)
41 TIGR03108 eps_aminotran_1 exos 98.4 8.9E-07 1.9E-11 91.9 9.4 88 13-137 234-323 (628)
42 PRK01565 thiamine biosynthesis 98.4 1.3E-06 2.9E-11 86.3 9.0 69 37-143 178-252 (394)
43 cd01993 Alpha_ANH_like_II This 98.4 1.8E-06 4E-11 74.6 8.5 70 37-138 1-72 (185)
44 TIGR01536 asn_synth_AEB aspara 98.3 4.6E-06 1E-10 83.5 12.0 88 13-136 229-319 (467)
45 TIGR02432 lysidine_TilS_N tRNA 98.3 3.7E-06 8E-11 73.7 8.7 67 37-137 1-69 (189)
46 PRK09431 asnB asparagine synth 98.3 6.9E-06 1.5E-10 84.7 11.8 104 14-143 204-311 (554)
47 TIGR03104 trio_amidotrans aspa 98.2 4.6E-06 1E-10 86.3 9.1 87 13-136 236-327 (589)
48 cd01994 Alpha_ANH_like_IV This 98.2 3.6E-06 7.7E-11 75.8 7.1 62 37-136 1-68 (194)
49 cd01713 PAPS_reductase This do 98.2 6.6E-06 1.4E-10 69.0 8.3 69 37-140 1-69 (173)
50 PLN00200 argininosuccinate syn 98.1 8.4E-06 1.8E-10 81.2 8.8 99 36-174 6-124 (404)
51 TIGR00032 argG argininosuccina 98.1 8.4E-06 1.8E-10 80.9 8.6 63 37-138 1-64 (394)
52 PTZ00077 asparagine synthetase 98.1 1.9E-05 4.2E-10 82.0 11.0 102 15-144 215-320 (586)
53 PRK14561 hypothetical protein; 98.1 9.7E-06 2.1E-10 72.8 7.6 61 37-138 2-62 (194)
54 cd01992 PP-ATPase N-terminal d 98.1 1.5E-05 3.2E-10 69.3 8.3 62 37-132 1-64 (185)
55 COG0367 AsnB Asparagine syntha 98.1 1.6E-05 3.4E-10 81.9 9.3 96 14-145 207-306 (542)
56 PRK08384 thiamine biosynthesis 98.0 1.3E-05 2.8E-10 79.3 8.2 96 36-174 181-295 (381)
57 PLN02549 asparagine synthase ( 98.0 2.9E-05 6.2E-10 80.6 11.0 89 17-135 205-295 (578)
58 cd01999 Argininosuccinate_Synt 98.0 1.4E-05 3.1E-10 79.1 8.2 64 38-139 1-65 (385)
59 PRK08349 hypothetical protein; 98.0 1.8E-05 3.8E-10 70.8 7.9 59 37-136 2-67 (198)
60 TIGR00342 thiazole biosynthesi 98.0 2.6E-05 5.6E-10 76.6 9.6 70 36-143 173-248 (371)
61 KOG0571 Asparagine synthase (g 98.0 3.5E-05 7.5E-10 77.0 10.2 91 23-145 211-305 (543)
62 PF01171 ATP_bind_3: PP-loop f 97.9 3.7E-05 8.1E-10 67.6 7.9 68 37-136 1-68 (182)
63 cd01995 ExsB ExsB is a transcr 97.9 8.1E-05 1.7E-09 64.3 9.7 85 37-173 1-86 (169)
64 PRK08576 hypothetical protein; 97.9 8.8E-05 1.9E-09 74.7 10.5 81 14-132 206-293 (438)
65 cd01712 ThiI ThiI is required 97.9 4.2E-05 9.1E-10 66.7 7.0 19 37-55 1-19 (177)
66 TIGR03679 arCOG00187 arCOG0018 97.7 5.9E-05 1.3E-09 69.0 6.3 23 113-135 43-65 (218)
67 PRK13795 hypothetical protein; 97.7 0.00025 5.4E-09 74.4 11.6 84 17-139 226-309 (636)
68 PRK10696 tRNA 2-thiocytidine b 97.7 0.00014 3.1E-09 67.7 8.2 69 35-136 29-97 (258)
69 COG0519 GuaA GMP synthase, PP- 97.6 0.00019 4E-09 68.5 8.0 69 33-138 19-88 (315)
70 PRK13794 hypothetical protein; 97.6 0.0007 1.5E-08 68.9 12.1 79 19-135 232-310 (479)
71 PF02568 ThiI: Thiamine biosyn 97.4 0.00025 5.5E-09 64.4 5.9 72 36-145 4-83 (197)
72 COG0037 MesJ tRNA(Ile)-lysidin 97.4 0.00056 1.2E-08 63.9 8.3 70 36-139 22-91 (298)
73 PF01507 PAPS_reduct: Phosphoa 97.4 0.0013 2.9E-08 55.9 9.2 65 38-140 2-66 (174)
74 PRK05253 sulfate adenylyltrans 97.4 0.0023 5E-08 61.6 11.8 77 25-137 19-95 (301)
75 PRK02090 phosphoadenosine phos 97.4 0.0012 2.5E-08 61.1 9.4 77 21-136 27-103 (241)
76 PRK10660 tilS tRNA(Ile)-lysidi 97.3 0.00066 1.4E-08 68.2 7.3 67 36-135 16-84 (436)
77 PRK08557 hypothetical protein; 97.2 0.0036 7.7E-08 62.9 12.1 80 18-135 162-243 (417)
78 cd01986 Alpha_ANH_like Adenine 97.2 0.001 2.2E-08 53.2 6.2 18 38-55 1-18 (103)
79 PRK01269 tRNA s(4)U8 sulfurtra 97.2 0.0014 2.9E-08 66.7 8.3 68 37-142 179-252 (482)
80 TIGR00289 conserved hypothetic 97.2 0.0033 7.2E-08 58.1 10.1 24 113-136 45-68 (222)
81 COG2117 Predicted subunit of t 97.0 0.0019 4.1E-08 57.5 6.5 59 38-136 3-61 (198)
82 PF00764 Arginosuc_synth: Argi 96.9 0.0028 6.2E-08 63.0 7.2 63 39-139 1-64 (388)
83 PRK05370 argininosuccinate syn 96.8 0.004 8.7E-08 62.9 7.8 74 34-145 10-85 (447)
84 KOG1622 GMP synthase [Nucleoti 96.8 0.0095 2.1E-07 60.3 10.1 77 24-140 222-299 (552)
85 COG0137 ArgG Argininosuccinate 96.7 0.006 1.3E-07 60.6 8.3 67 35-139 4-71 (403)
86 COG1365 Predicted ATPase (PP-l 96.4 0.0026 5.5E-08 58.9 3.4 57 37-134 62-118 (255)
87 COG0301 ThiI Thiamine biosynth 96.2 0.018 3.9E-07 57.3 8.2 70 38-145 178-254 (383)
88 TIGR00434 cysH phosophoadenyly 96.2 0.045 9.8E-07 49.2 10.0 61 36-134 14-74 (212)
89 TIGR02039 CysD sulfate adenyly 96.0 0.087 1.9E-06 50.7 11.4 68 36-137 20-87 (294)
90 PRK12563 sulfate adenylyltrans 95.7 0.14 3E-06 49.8 11.7 79 24-138 28-106 (312)
91 cd01984 AANH_like Adenine nucl 95.5 0.081 1.7E-06 40.4 7.4 18 38-55 1-18 (86)
92 TIGR02057 PAPS_reductase phosp 95.3 0.17 3.6E-06 46.7 10.4 57 35-128 25-81 (226)
93 KOG1706 Argininosuccinate synt 94.5 0.078 1.7E-06 51.7 5.8 58 33-130 3-60 (412)
94 COG0175 CysH 3'-phosphoadenosi 94.3 0.33 7.2E-06 45.7 9.6 68 34-139 38-105 (261)
95 TIGR03183 DNA_S_dndC putative 93.1 0.32 7E-06 49.5 7.8 72 36-136 14-92 (447)
96 PRK06850 hypothetical protein; 92.8 0.42 9.2E-06 49.4 8.2 89 18-136 18-113 (507)
97 COG2102 Predicted ATPases of P 92.0 0.82 1.8E-05 42.6 8.2 62 38-136 3-69 (223)
98 TIGR00290 MJ0570_dom MJ0570-re 91.9 0.6 1.3E-05 43.3 7.2 22 114-135 46-67 (223)
99 PF01902 ATP_bind_4: ATP-bindi 89.0 0.72 1.6E-05 42.6 5.1 63 37-135 2-67 (218)
100 KOG0573 Asparagine synthase [A 84.6 0.65 1.4E-05 47.4 2.4 21 36-56 251-271 (520)
101 TIGR02026 BchE magnesium-proto 81.3 18 0.0004 36.9 11.5 81 26-134 289-374 (497)
102 COG3969 Predicted phosphoadeno 77.9 5 0.00011 40.0 5.8 29 23-56 20-48 (407)
103 TIGR02055 APS_reductase thiore 75.0 9.3 0.0002 34.1 6.4 35 100-134 19-53 (191)
104 COG0363 NagB 6-phosphogluconol 66.7 7.5 0.00016 36.3 4.0 38 8-45 2-41 (238)
105 TIGR00424 APS_reduc 5'-adenyly 65.2 43 0.00093 34.5 9.4 32 101-132 142-173 (463)
106 PRK12358 putative 6-phosphoglu 64.6 8.1 0.00018 35.6 3.8 43 8-52 2-44 (239)
107 PLN02309 5'-adenylylsulfate re 62.8 54 0.0012 33.7 9.6 31 102-132 138-168 (457)
108 PRK00443 nagB glucosamine-6-ph 57.5 12 0.00027 34.3 3.7 39 9-47 3-44 (261)
109 KOG2840 Uncharacterized conser 56.1 77 0.0017 31.5 8.9 74 36-139 52-125 (347)
110 PRK09762 galactosamine-6-phosp 56.0 14 0.00031 33.9 3.8 36 9-46 3-38 (232)
111 PRK10490 sensor protein KdpD; 51.6 1.9E+02 0.004 32.1 12.1 48 100-147 281-334 (895)
112 PTZ00285 glucosamine-6-phospha 49.9 22 0.00048 33.0 4.1 40 9-48 3-45 (253)
113 PLN02360 probable 6-phosphoglu 49.9 23 0.00049 33.3 4.2 38 8-45 12-51 (268)
114 KOG3147 6-phosphogluconolacton 49.8 20 0.00044 34.0 3.8 37 9-45 11-49 (252)
115 TIGR01198 pgl 6-phosphoglucono 48.8 26 0.00056 32.2 4.3 35 12-46 2-38 (233)
116 TIGR00502 nagB glucosamine-6-p 48.8 22 0.00048 33.1 3.9 43 9-51 3-48 (259)
117 PF06057 VirJ: Bacterial virul 44.1 22 0.00048 32.4 3.0 55 187-250 35-89 (192)
118 PF14394 DUF4423: Domain of un 41.3 2.3E+02 0.005 25.0 9.0 78 12-121 52-140 (171)
119 PRK03359 putative electron tra 40.6 79 0.0017 29.9 6.3 29 104-132 117-145 (256)
120 TIGR03471 HpnJ hopanoid biosyn 40.1 2.3E+02 0.0049 28.6 9.9 82 25-134 288-374 (472)
121 COG2205 KdpD Osmosensitive K+ 37.6 2.2E+02 0.0047 31.8 9.6 77 36-146 249-331 (890)
122 COG4703 Uncharacterized protei 36.8 16 0.00035 28.3 0.8 45 212-265 25-69 (74)
123 cd01399 GlcN6P_deaminase GlcN6 36.5 33 0.00072 30.7 2.9 30 16-47 1-30 (232)
124 PRK04447 hypothetical protein; 36.4 2.3E+02 0.0049 28.2 8.9 117 35-215 232-348 (351)
125 TIGR01319 glmL_fam conserved h 34.0 1.3E+02 0.0027 31.3 6.9 131 38-172 122-304 (463)
126 TIGR03551 F420_cofH 7,8-dideme 31.1 1.2E+02 0.0026 29.4 6.0 108 11-129 68-195 (343)
127 PF11230 DUF3029: Protein of u 30.8 57 0.0012 33.7 3.8 47 188-240 103-149 (487)
128 PF09547 Spore_IV_A: Stage IV 30.3 2.1E+02 0.0046 29.8 7.7 63 69-147 168-231 (492)
129 PRK13602 putative ribosomal pr 30.1 2.1E+02 0.0045 22.2 6.1 33 100-133 28-60 (82)
130 PRK02122 glucosamine-6-phospha 29.8 51 0.0011 35.3 3.4 46 6-51 27-74 (652)
131 cd02903 Macro_BAL_like Macro d 28.2 2E+02 0.0043 24.1 6.2 60 71-130 43-109 (137)
132 cd01400 6PGL 6PGL: 6-Phosphogl 27.8 72 0.0016 28.9 3.7 27 18-46 7-33 (219)
133 cd03030 GRX_SH3BGR Glutaredoxi 27.6 1.2E+02 0.0027 24.0 4.6 36 101-136 2-40 (92)
134 PRK12342 hypothetical protein; 27.4 1.3E+02 0.0029 28.4 5.5 27 105-131 115-141 (254)
135 COG3494 Uncharacterized protei 27.3 1.3E+02 0.0029 29.0 5.3 107 14-127 48-168 (279)
136 PF01182 Glucosamine_iso: Gluc 25.9 80 0.0017 28.2 3.5 32 16-49 3-34 (199)
137 TIGR00112 proC pyrroline-5-car 25.7 3.2E+02 0.007 25.0 7.6 107 35-172 69-183 (245)
138 cd01455 vWA_F11C1-5a_type Von 25.3 1.8E+02 0.0039 26.5 5.7 39 98-136 113-152 (191)
139 PRK06683 hypothetical protein; 24.8 2.9E+02 0.0063 21.5 6.1 33 100-133 28-60 (82)
140 PF13941 MutL: MutL protein 24.7 1.8E+02 0.0038 30.1 6.1 141 28-174 118-303 (457)
141 cd00458 SugarP_isomerase Sugar 24.5 89 0.0019 27.1 3.5 26 18-45 4-29 (169)
142 PF10624 TraS: Plasmid conjuga 24.5 21 0.00045 31.2 -0.5 10 40-49 141-150 (164)
143 COG1102 Cmk Cytidylate kinase 24.2 1.1E+02 0.0025 27.6 4.1 42 114-174 13-54 (179)
144 COG0041 PurE Phosphoribosylcar 23.8 1.4E+02 0.003 26.7 4.5 35 100-135 4-38 (162)
145 KOG2316 Predicted ATPase (PP-l 23.4 6.6E+02 0.014 24.0 9.1 15 38-52 3-17 (277)
146 TIGR02728 spore_gerQ spore coa 22.5 1.2E+02 0.0026 24.1 3.4 34 100-133 19-52 (82)
147 TIGR02189 GlrX-like_plant Glut 22.3 2.5E+02 0.0054 22.2 5.4 67 100-170 9-79 (99)
148 KOG1794 N-Acetylglucosamine ki 21.8 1E+02 0.0022 30.3 3.6 47 9-55 36-88 (336)
149 PRK06852 aldolase; Validated 21.6 6E+02 0.013 24.8 8.8 89 112-203 187-296 (304)
150 cd04121 Rab40 Rab40 subfamily. 21.3 2.3E+02 0.0051 24.8 5.6 41 113-153 128-174 (189)
151 cd03028 GRX_PICOT_like Glutare 21.3 3E+02 0.0064 21.1 5.6 50 100-150 9-60 (90)
152 PRK07094 biotin synthase; Prov 20.4 7.3E+02 0.016 23.4 9.1 28 103-130 185-212 (323)
No 1
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.1e-102 Score=763.04 Aligned_cols=270 Identities=64% Similarity=1.085 Sum_probs=265.0
Q ss_pred CCCCCcccccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhh
Q 021929 2 SLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIG 81 (305)
Q Consensus 2 ~~~~~~~~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig 81 (305)
.|+.|++|.||+|+|||+.||||||||||||||+.|||||||||+|||+||+||++||++|++|+++||+||+.|+++|.
T Consensus 316 ~~t~p~e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~ 395 (706)
T KOG2303|consen 316 TPTEPIEWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIV 395 (706)
T ss_pred CCCCCcccccCCcHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcCCCCccc-----
Q 021929 82 RYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK----- 156 (305)
Q Consensus 82 ~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g~~prfr----- 156 (305)
.+ .+|+|++|++|||++|+||||+++|||+||+.+|++||++||++|..++||.+|++++++|..+||++|+|+
T Consensus 396 ~~-~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggs 474 (706)
T KOG2303|consen 396 ND-ISYTPTDPADLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGS 474 (706)
T ss_pred cC-CCcCCCCHHHHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCc
Confidence 77 589999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 021929 157 -------------------------------------------------------------------------------- 156 (305)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (305)
T Consensus 475 n~enlaLQNiQARiRMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a 554 (706)
T KOG2303|consen 475 NRENLALQNIQARIRMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYA 554 (706)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhccccccccCCccCccHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------ccccccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHH
Q 021929 157 -------------------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAE 205 (305)
Q Consensus 157 -------------------------------tDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~ 205 (305)
+||+||||||+||++||||||+.+||||+||++|++.|+++++|+||+|
T Consensus 555 ~~~~~lp~L~~il~a~pTAELePl~~g~~~QtDE~dmGmTY~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaE 634 (706)
T KOG2303|consen 555 KEKFGLPALQSILDAPPTAELEPLTDGDYSQTDEADMGMTYAELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAE 634 (706)
T ss_pred HHhcCchHHHHHhcCCCcccccccccCcccccchhhhCccHHHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccccCCCCCcccccccccCCCCccchhhHHHHHHHhhcCCCCC
Q 021929 206 KVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPF 272 (305)
Q Consensus 206 kVk~ff~~~~~NrHKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~w~~~f~~id~~~~~~~~~~~~~ 272 (305)
|||+||.+|++||||||++|||||+|+||||||||||||||||++|||||+|||++|+++|....+.
T Consensus 635 KVk~FF~~Y~iNRHKmTvlTPsyHAE~YspeDnRfDlRpFLynp~w~wqfkkIde~v~~~e~~~~~~ 701 (706)
T KOG2303|consen 635 KVKRFFSYYSINRHKMTVLTPSYHAENYSPEDNRFDLRPFLYNPSWPWQFKKIDEQVEQLEANSTKS 701 (706)
T ss_pred HHHHHHhhheeccccceecccccccccCCCccccccccccccCCCCchHHHHHHHHHHHhhhccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999876653
No 2
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=3.4e-74 Score=597.02 Aligned_cols=267 Identities=85% Similarity=1.349 Sum_probs=253.2
Q ss_pred CCCCcccccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhc
Q 021929 3 LSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGR 82 (305)
Q Consensus 3 ~~~~~~~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~ 82 (305)
+++|+++.++.|+|||..+++|||||||+++|++||+||||||+|||+||+||++||+++++|++.|+++|+.|++|+.+
T Consensus 316 ~~~~~~~~~~~p~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~ 395 (700)
T PLN02339 316 PSSPLKIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGN 395 (700)
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhcc
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcCCCCcc-------
Q 021929 83 YANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRY------- 155 (305)
Q Consensus 83 ~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g~~prf------- 155 (305)
.+..+.|.+|++||+++++|||||+.+||++|+++|++||+.||++|++|+|+++|+++.+.|...+|+.|+|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~ 475 (700)
T PLN02339 396 YADGEVPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSN 475 (700)
T ss_pred ccccccccchhhhhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCc
Confidence 7777999999999999999999999999999999999999999999999999999999988876655544432
Q ss_pred -------------c------------------------------------------------------------------
Q 021929 156 -------------K------------------------------------------------------------------ 156 (305)
Q Consensus 156 -------------r------------------------------------------------------------------ 156 (305)
|
T Consensus 476 ~~d~~~~NiQAR~R~~~l~~~A~l~~~~~~~~g~~LvlgTgN~sE~~~Gy~T~ygd~~~~~~pi~~l~Kt~v~~l~~~~~ 555 (700)
T PLN02339 476 AENLALQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGLRGYLTKYDCSSADINPIGGISKQDLRSFLRWAA 555 (700)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhcchhhccCCceEEEcCCCcchhheeeeeecCCCCcCccccCCCcHHHHHHHHHHHH
Confidence 2
Q ss_pred -----------------------------ccccccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHH
Q 021929 157 -----------------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKV 207 (305)
Q Consensus 157 -----------------------------tDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kV 207 (305)
+||+||||||++++.|++||+..++||++||.+|.++|++.|++++|++||
T Consensus 556 ~~~~~~il~~i~~~~pSaEL~p~~~~~~Q~dE~~lG~~Y~~l~~~~~l~~~~~~~p~~i~~~~~~~~~~~y~~~~i~~~~ 635 (700)
T PLN02339 556 TNLGYPSLAEVEAAPPTAELEPIRDDYSQTDEEDMGMTYEELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKV 635 (700)
T ss_pred HhcCCCcHHHHhcCCCCcccccCCCCCCCCCHHHHCcCHHHHHHHHHHHhccCCCHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 789999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHhhhcccccCCCcccccccCCCCCcccccccccCCCCccchhhHHHHHHHhhcCC
Q 021929 208 KHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 269 (305)
Q Consensus 208 k~ff~~~~~NrHKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~w~~~f~~id~~~~~~~~~~ 269 (305)
|+||++|++|||||+++|||||+++||||||||||||||||++|+|||++||++|+++|...
T Consensus 636 ~~F~~~f~~nq~Kr~~~~p~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (700)
T PLN02339 636 KDFFKYYSINRHKMTTLTPSYHAESYSPDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGET 697 (700)
T ss_pred HHHHHHHHHhhccccccCCccccCCCCCCCCcccccccccCCCCchhHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999654
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.97 E-value=1.5e-29 Score=262.92 Aligned_cols=216 Identities=20% Similarity=0.170 Sum_probs=152.2
Q ss_pred CCcccccCCcH---------HHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHH
Q 021929 5 GPLKITYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKA 75 (305)
Q Consensus 5 ~~~~~~~~~pe---------eEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~ 75 (305)
+|+++.++.|. +++...+++||+||++++|.+|++||||||+||+++|+++ +++++
T Consensus 322 ~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~-------~~a~~-------- 386 (679)
T PRK02628 322 RPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVA-------AKAMD-------- 386 (679)
T ss_pred CcCCCCCCCCcChhhhhhhHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHH--------
Confidence 45666666664 7889999999999999999999999999999999999998 45532
Q ss_pred HHHHhh--ccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhh-----
Q 021929 76 DAIRIG--RYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL----- 148 (305)
Q Consensus 76 ~~~~ig--~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~----- 148 (305)
+++ .+ ++++|+||+.+||+.+.++|++||+.+|++|.+++|++++.++...+...
T Consensus 387 ---~lg~~~~---------------~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~~~~~~ 448 (679)
T PRK02628 387 ---RLGLPRK---------------NILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHPFARGE 448 (679)
T ss_pred ---hhCCCcc---------------eEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhccccccCC
Confidence 133 23 58999999999999999999999999999999999999999877655321
Q ss_pred -------cCCCCccc-----------------------------ccc-cccCCChhhhhhh--------he---------
Q 021929 149 -------TGKRPRYK-----------------------------LDE-VDMGMTYEELSVY--------GR--------- 174 (305)
Q Consensus 149 -------~g~~prfr-----------------------------tDE-~dmGmtY~eLd~y--------~r--------- 174 (305)
.|...|.| |-- .|++..|..++.. +|
T Consensus 449 ~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn~sE~~~Gy~T~~~GD~~~~~~~~~~l~Kt~v~~l~~~~~~~~~~~ 528 (679)
T PRK02628 449 PVYDVTFENVQAGERTQILFRLANQHGGIVIGTGDLSELALGWCTYGVGDHMSHYNVNASVPKTLIQHLIRWVIASGQFD 528 (679)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCchhhHHhCceecCCCCcccccccccCCcHHHHHHHHHHHHhhcccc
Confidence 13444555 222 3333333322210 01
Q ss_pred ------------------eee-----------ccccChHHHHHH-HHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccC
Q 021929 175 ------------------LRK-----------IFHCGPVSMFKN-LCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVL 224 (305)
Q Consensus 175 ------------------lrk-----------~~~~gP~~mf~~-l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l 224 (305)
|+- ...+|||++++. |.+.|..+++|++|+.+++++|+.| ||||+++
T Consensus 529 ~~~~~ip~~i~~~~psaeL~p~~~~g~~~q~ded~lgpY~~~D~~l~~~~~~~~~~~~i~~~~~~~f~~~--~~~~~~~- 605 (679)
T PRK02628 529 EAVSEVLLDILDTEISPELVPADKEGEIVQSTEDIIGPYELQDFFLYYFLRYGFRPSKIAFLAWHAWKDA--ERGAWPG- 605 (679)
T ss_pred ccchhhHHHHhcCCCCccccCCCCCCCCCCcchhccCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcc--ccccCCC-
Confidence 111 112467777773 3345566677777777777777666 7777765
Q ss_pred CCcccccccCCCCCcccccccccCCCCccchhh
Q 021929 225 TPSYHAESYSPEDNRFDLRQFLYNARWPYQFRK 257 (305)
Q Consensus 225 ~Ps~h~e~yspDdnr~d~r~fly~~~w~~~f~~ 257 (305)
||++|++.|++++.+.++|+|++ ..|++|||+
T Consensus 606 ~~~~~~~~~~~~~v~~~~~~f~~-~~~~~qfKR 637 (679)
T PRK02628 606 FPEDKRPAYDLATIKKWLEVFLR-RFFSSQFKR 637 (679)
T ss_pred CcchhcccCCHHHHHHHHHHHcc-hhchHhhCc
Confidence 77777777777777777777766 566777765
No 4
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.96 E-value=3.1e-29 Score=231.63 Aligned_cols=158 Identities=32% Similarity=0.408 Sum_probs=134.6
Q ss_pred HhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCC
Q 021929 19 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKR 98 (305)
Q Consensus 19 ~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~ 98 (305)
...+..||+||++++|.+|++|||||||||+++|+|+ +++ +|.+
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La-------~~A--------------lg~~--------------- 45 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALA-------VKA--------------LGPD--------------- 45 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHH-------HHH--------------HGGG---------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHH-------HHH--------------hhhc---------------
Confidence 5678999999999999999999999999999999999 677 5555
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhh------hcCCCCccc----------------
Q 021929 99 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT------LTGKRPRYK---------------- 156 (305)
Q Consensus 99 ~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~------~~g~~prfr---------------- 156 (305)
++++++||+.++++++.++|+.+|+.+|++|.++||+++++++.+.+.. ..|.++|.|
T Consensus 46 ~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVl 125 (242)
T PF02540_consen 46 NVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNYLVL 125 (242)
T ss_dssp EEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEB
T ss_pred cccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccceEEe
Confidence 5999999999999999999999999999999999999999998876653 235555555
Q ss_pred ------------------------------------------------------------ccccccCCChhhhhhhheee
Q 021929 157 ------------------------------------------------------------LDEVDMGMTYEELSVYGRLR 176 (305)
Q Consensus 157 ------------------------------------------------------------tDE~dmGmtY~eLd~y~rlr 176 (305)
+||+|||+||++||.|.+ .
T Consensus 126 gT~N~sE~~~Gy~T~~GD~~~d~~Pi~~L~K~eV~~la~~l~ip~~ii~k~Psa~L~~gqtDE~elg~~Y~~lD~~l~-~ 204 (242)
T PF02540_consen 126 GTGNKSELLLGYFTKYGDGAGDIAPIADLYKTEVRELARYLGIPEEIIEKPPSAGLWPGQTDEDELGFSYEELDAILR-L 204 (242)
T ss_dssp E--CHHHHHHTCSHTTTTTSSSBETTTTS-HHHHHHHHHHTTCGHHHHCS--BHHSSTT-BHHHHHTSTHHHHHHHHH-H
T ss_pred cCCcHHHhhcCcccccCcccccceeeCCcCHHHHHHHHHHHhhHHHHhcCCCCCCCCCCCCCHHHhCCCHHHHHHHHH-H
Confidence 899999999999999988 5
Q ss_pred eccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhccccc
Q 021929 177 KIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 223 (305)
Q Consensus 177 k~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~ 223 (305)
...+.+|..++.. ..+++ +.|+++.+++.+|+|||..
T Consensus 205 ~~~~~~~~~~~~~------~~~~~----~~~~~i~~~~~~~~hKr~~ 241 (242)
T PF02540_consen 205 IEEGLSPEEIAEK------LGVDP----EVVERIERLHKRSEHKRRQ 241 (242)
T ss_dssp HTSSTTHHHHHHT------CTS-H----HHHHHHHHHHHHTGGGGSS
T ss_pred HHcCCCHHHHHHh------cCCCH----HHHHHHHHHHHhhhhccCC
Confidence 5666777776653 13443 6789999999999999973
No 5
>PRK13981 NAD synthetase; Provisional
Probab=99.95 E-value=4.8e-28 Score=245.06 Aligned_cols=187 Identities=24% Similarity=0.236 Sum_probs=160.2
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcch
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 92 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~ 92 (305)
.+++++...+++||+|||+++|.++++|+||||+||+++|+|+ +++ ++.+
T Consensus 258 ~~~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la-------~~a--------------~g~~--------- 307 (540)
T PRK13981 258 EGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIA-------VDA--------------LGAE--------- 307 (540)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHH--------------hCcC---------
Confidence 3478999999999999999999999999999999999999998 566 4544
Q ss_pred hhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhh----------cCCCCccc------
Q 021929 93 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL----------TGKRPRYK------ 156 (305)
Q Consensus 93 ~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~----------~g~~prfr------ 156 (305)
++++++||+.++++.+.++|+++|+.+|++|++++|+++++++...+... .|.++|.|
T Consensus 308 ------~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~ 381 (540)
T PRK13981 308 ------RVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMA 381 (540)
T ss_pred ------cEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999987655431 34455555
Q ss_pred -----------------------------------------------------------------------------ccc
Q 021929 157 -----------------------------------------------------------------------------LDE 159 (305)
Q Consensus 157 -----------------------------------------------------------------------------tDE 159 (305)
+||
T Consensus 382 ~a~~~~~lvlgt~n~sE~~~Gy~t~~GD~~~~~~pi~~l~K~~v~~la~~~~~~~~~~~vp~~i~~~~psa~l~~~q~de 461 (540)
T PRK13981 382 LSNKFGSLVLTTGNKSEMAVGYATLYGDMAGGFAPIKDVYKTLVYRLCRWRNTVSPGEVIPERIITKPPSAELRPNQTDQ 461 (540)
T ss_pred HHhccCCEEEeCCccCHHHcCCeEecCCcccCccccCCCCHHHHHHHHHHHHhhcCCCcchHHHhCCCCCCCCCCCCcCc
Confidence 899
Q ss_pred cccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccccCCCCCc
Q 021929 160 VDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNR 239 (305)
Q Consensus 160 ~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~yspDdnr 239 (305)
++|| ||++||.+.+.....+.+|..+... .+++ +.|++++++|.+|||||.++||.+|+.+.+++
T Consensus 462 ~~l~-~Y~~lD~~l~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~KR~~~pp~~~~~~~~~~--- 526 (540)
T PRK13981 462 DSLP-PYDVLDAILERLVEEEQSVAEIVAA-------GFDR----ATVRRVERLLYIAEYKRRQAAPGVKITRRAFG--- 526 (540)
T ss_pred cccC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCH----HHHHHHHHHHHhchhccccCCCcceecCCCCC---
Confidence 9998 9999999988776777788777653 4665 45788999999999999999999999988886
Q ss_pred ccccccccCCCCcc
Q 021929 240 FDLRQFLYNARWPY 253 (305)
Q Consensus 240 ~d~r~fly~~~w~~ 253 (305)
+.|.||..+.|
T Consensus 527 ---~~~r~p~~~~~ 537 (540)
T PRK13981 527 ---RDRRYPITNRF 537 (540)
T ss_pred ---CCccCccccCc
Confidence 66788988876
No 6
>PRK13980 NAD synthetase; Provisional
Probab=99.95 E-value=4e-27 Score=219.37 Aligned_cols=172 Identities=24% Similarity=0.296 Sum_probs=140.0
Q ss_pred cHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchh
Q 021929 14 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 93 (305)
Q Consensus 14 peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~ 93 (305)
+.+++...+..||++|++++|.++++|+||||+||+++|+++ .++ ++..
T Consensus 9 ~~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~~~~---------- 57 (265)
T PRK13980 9 DYEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLA-------VKA--------------LGKE---------- 57 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHH--------------hCcc----------
Confidence 567888999999999999999999999999999999999999 455 3333
Q ss_pred hhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhh-----hcCCCCccc------------
Q 021929 94 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT-----LTGKRPRYK------------ 156 (305)
Q Consensus 94 e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~-----~~g~~prfr------------ 156 (305)
.+++++|++..++..+.++|+.+|+.+|++|+.++|+++++++...+.. .+|..+|.|
T Consensus 58 -----~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g 132 (265)
T PRK13980 58 -----NVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANREN 132 (265)
T ss_pred -----ceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcC
Confidence 3899999998888899999999999999999999999999887654421 123333322
Q ss_pred ----------------------------------------------------------------ccccccCCChhhhhhh
Q 021929 157 ----------------------------------------------------------------LDEVDMGMTYEELSVY 172 (305)
Q Consensus 157 ----------------------------------------------------------------tDE~dmGmtY~eLd~y 172 (305)
+||++|||||++||.|
T Consensus 133 ~lvlgTgn~sE~~~G~~t~~gD~~~~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~L~~~q~De~~lg~~Y~~lD~~ 212 (265)
T PRK13980 133 RLVLGTGNKSELLLGYFTKYGDGAVDLNPIGDLYKTQVRELARHLGVPEDIIEKPPSADLWEGQTDEGELGFSYETIDEI 212 (265)
T ss_pred CEEEcCCCHhHHHhCCccCCCCcccCcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcCCCCCCCCHHHcCCCHHHHHHH
Confidence 8999999999999999
Q ss_pred heeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccc
Q 021929 173 GRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES 232 (305)
Q Consensus 173 ~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~ 232 (305)
.+.....+.+|..|...+ ..++ ++|++|+++|.+|+|||. +||++|+++
T Consensus 213 l~~~~~~~~~~~~i~~~~------~~~~----~~~~~i~~~~~~~~~Kr~-~p~~~~~~~ 261 (265)
T PRK13980 213 LYLLFDKKMSREEILEEL------GVPE----DLVDRVRRLVQRSQHKRR-LPPIPKLSG 261 (265)
T ss_pred HHHHHHcCCCHHHHHHHh------CCCH----HHHHHHHHHHHHhhhccc-CCCCcCCCc
Confidence 876555566666666543 2333 678999999999999998 999999853
No 7
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.93 E-value=1.8e-25 Score=205.93 Aligned_cols=161 Identities=42% Similarity=0.590 Sum_probs=134.2
Q ss_pred cHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchh
Q 021929 14 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 93 (305)
Q Consensus 14 peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~ 93 (305)
+++++...+++||++|++++|.++++|+||||+||+++|+++ +++ ++..
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la-------~~~--------------~~~~---------- 50 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALA-------VRA--------------LGRE---------- 50 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHH-------HHH--------------hCcc----------
Confidence 467899999999999999999999999999999999999999 565 2322
Q ss_pred hhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhh----------hcCCCCccc-------
Q 021929 94 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT----------LTGKRPRYK------- 156 (305)
Q Consensus 94 e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~----------~~g~~prfr------- 156 (305)
++++++|++..++..+.++|+.+|+++|++|+++++++++..+...+.. .+|..+|.|
T Consensus 51 -----~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~ 125 (248)
T cd00553 51 -----NVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYAL 125 (248)
T ss_pred -----cEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHH
Confidence 4899999998888899999999999999999999999999987766531 244444444
Q ss_pred ---------------------------------------------------------------------ccccccCCChh
Q 021929 157 ---------------------------------------------------------------------LDEVDMGMTYE 167 (305)
Q Consensus 157 ---------------------------------------------------------------------tDE~dmGmtY~ 167 (305)
+||++||+||+
T Consensus 126 A~~~~~~vlgTgn~~E~~~G~~t~~gd~~~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~psa~l~~~q~de~~lg~~Y~ 205 (248)
T cd00553 126 ANKLGGLVLGTGNKSELLLGYFTKYGDGAADINPIGDLYKTQVRELARYLGVPESIIDKPPSAELWPGQTDEDELGMPYE 205 (248)
T ss_pred HHhcCCEEEcCCcHhHHHhCCeeccCCcccCccccCCCcHHHHHHHHHHHCchHHHhcCCCCcccCCCCCCHHHhCCCHH
Confidence 89999999999
Q ss_pred hhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhccc
Q 021929 168 ELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKM 221 (305)
Q Consensus 168 eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKr 221 (305)
++|.|.+.....+++|..+... ..+ .+.|++|+++|.+|+|||
T Consensus 206 ~lD~~l~~~~~~~~~~~~~~~~-------~~~----~~~~~~i~~~~~~~~~KR 248 (248)
T cd00553 206 ELDQFLYLRLEGGLGPEEILAP-------GII----EEVVKRVFRLYKKNEHKR 248 (248)
T ss_pred HHHHHHHHHHhcCCCHhhhhcc-------CCC----HHHHHHHHHHHHhccccc
Confidence 9999998777777777544322 233 378999999999999998
No 8
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.92 E-value=7.8e-25 Score=205.33 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=123.3
Q ss_pred CCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcc
Q 021929 12 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 91 (305)
Q Consensus 12 ~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~ 91 (305)
-...++....+.+||+||++++|.+|++||||||||||+||+|+ +++++. .+.+.
T Consensus 15 ~~~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~-------~~A~~~-----------~~~~~------- 69 (268)
T PRK00768 15 TIDPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLA-------QLAVEE-----------LRAET------- 69 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHH-----------hcccc-------
Confidence 34556667888899999999999999999999999999999998 566331 11110
Q ss_pred hhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHHHhhh---------hcCCCCccc-----
Q 021929 92 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT---------LTGKRPRYK----- 156 (305)
Q Consensus 92 ~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi-~h~~i~Id~~v~a~~~~f~~---------~~g~~prfr----- 156 (305)
......++++.||. +++++.++|+.+|+.+|+ .|.+|+|+++++++.+.+.. ..|.++|.|
T Consensus 70 --~~~~~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly 145 (268)
T PRK00768 70 --GDDDYQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQY 145 (268)
T ss_pred --cCcceeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 00001378999996 334689999999999999 89999999999999876642 246666666
Q ss_pred --------------------------------------------------------------------------cccccc
Q 021929 157 --------------------------------------------------------------------------LDEVDM 162 (305)
Q Consensus 157 --------------------------------------------------------------------------tDE~dm 162 (305)
+||+||
T Consensus 146 ~~An~~~~lvlgT~N~sE~~~Gy~TkyGD~~~d~~pi~~L~KteV~~La~~l~vP~~ii~k~Psa~L~~~~~gq~DE~~l 225 (268)
T PRK00768 146 AIAGATGGLVVGTDHAAEAVTGFFTKFGDGGADILPLFGLNKRQGRALLAALGAPEHLYEKVPTADLEDDRPGLPDEVAL 225 (268)
T ss_pred HHHccCCCEEEcCCcccHHHhCceeccCCccccchhhcCCcHHHHHHHHHHhCCCHHHhcCCCCCCcCCCCCCCCChhhc
Confidence 899999
Q ss_pred CCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 021929 163 GMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPS 227 (305)
Q Consensus 163 GmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps 227 (305)
|+||+++|.|... + ..++ +.|+++.+++.+|+|||. +||.
T Consensus 226 g~~Y~~lD~~L~~------~--------------~~~~----~~~~~i~~~~~~~~~Kr~-~p~~ 265 (268)
T PRK00768 226 GVTYDQIDDYLEG------K--------------PVSE----EAAETIENWYLKTEHKRH-LPIT 265 (268)
T ss_pred CCCHHHHHHHHhc------C--------------CCCH----HHHHHHHHHHHHHHHccc-CCCC
Confidence 9999999988532 1 1332 457777899999999997 4553
No 9
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.92 E-value=1.4e-24 Score=203.66 Aligned_cols=167 Identities=29% Similarity=0.351 Sum_probs=134.5
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcch
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 92 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~ 92 (305)
.+.++....++.||.+||+++|.+|+|||||||+||++|++|+ ++|++.|+ ..+
T Consensus 3 ~d~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~~~----------~~~--------- 56 (268)
T COG0171 3 IDLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGKGD----------SKE--------- 56 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhcccc----------chh---------
Confidence 4578889999999999999999999999999999999999999 78843200 011
Q ss_pred hhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHH-hhh----------hcCCCCccc-----
Q 021929 93 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL-FQT----------LTGKRPRYK----- 156 (305)
Q Consensus 93 ~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~-f~~----------~~g~~prfr----- 156 (305)
++.++.||+...++.+.++|+.+++.+|+++.++||.++|.++... ... ..|.++|.|
T Consensus 57 ------~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY 130 (268)
T COG0171 57 ------NVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILY 130 (268)
T ss_pred ------heeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHH
Confidence 5999999986536789999999999999999999999999987332 211 346777766
Q ss_pred --------------------------------------------------------------------------cccccc
Q 021929 157 --------------------------------------------------------------------------LDEVDM 162 (305)
Q Consensus 157 --------------------------------------------------------------------------tDE~dm 162 (305)
+||++|
T Consensus 131 ~~An~~~~lVlGTgn~sE~~~Gy~TkyGDg~~d~~Pi~~L~KtqV~~La~~l~ipe~I~~k~PTAeL~~~~~~q~DE~~l 210 (268)
T COG0171 131 AIANKLGGLVLGTGNKSELALGYFTKYGDGAVDINPIADLYKTQVYALARHLGIPEEILKKPPTADLWPDEPGQTDEAEL 210 (268)
T ss_pred HHHhhcCCEEEcCCcHHHHhcCceecccCcccChhhhcCCcHHHHHHHHHHcCCCHHHhcCCCCccccCCCCCCCCHHHh
Confidence 789999
Q ss_pred CCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCccccc
Q 021929 163 GMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE 231 (305)
Q Consensus 163 GmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e 231 (305)
||||+++|.|++.+... . .+.++ +.++++.++|.+|+|||. +||.++..
T Consensus 211 g~~Y~~lD~~L~~~~~~--------~-------~~i~~----~~~~~i~~~~~~~~~KR~-~p~~~~~~ 259 (268)
T COG0171 211 GMPYEELDDILYGLLEN--------G-------QEISE----ELVKKIERLYKKSEHKRR-LPIGPKIT 259 (268)
T ss_pred CCCHHHHHHHHHHhhhh--------h-------cccCH----HHHHHHHHHHHHHHhhhc-CCCCcCcc
Confidence 99999999997755332 0 12443 568888899999999998 88887665
No 10
>PTZ00323 NAD+ synthase; Provisional
Probab=99.89 E-value=1.8e-22 Score=191.70 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=85.4
Q ss_pred cCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCc
Q 021929 11 YHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 90 (305)
Q Consensus 11 ~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~ 90 (305)
...+.+++......||++||+++|.++++|||||||||+++|+++ ++++ +..
T Consensus 22 ~~~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa-------~~al--------------g~~------- 73 (294)
T PTZ00323 22 RAFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALC-------ARAM--------------RMP------- 73 (294)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHh--------------ccc-------
Confidence 334566778889999999999999999999999999999999999 5663 211
Q ss_pred chhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHh
Q 021929 91 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 145 (305)
Q Consensus 91 ~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f 145 (305)
..|..+++|++||+ +|++.+.++|+.+|+.+|++|++|||+++++++...+
T Consensus 74 ---~~~~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i 124 (294)
T PTZ00323 74 ---NSPIQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLV 124 (294)
T ss_pred ---cCCceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHH
Confidence 01122589999996 6888999999999999999999999999997765544
No 11
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.87 E-value=2.5e-21 Score=178.75 Aligned_cols=156 Identities=26% Similarity=0.349 Sum_probs=115.2
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhh
Q 021929 16 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 95 (305)
Q Consensus 16 eEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~ 95 (305)
++....+..||++++++++.++++||||||+||+++|+++ +++ .+.+
T Consensus 3 ~~~~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~-------~~~--------------~~~~------------ 49 (250)
T TIGR00552 3 IKYVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC-------VEA--------------LGEQ------------ 49 (250)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH-------HHh--------------hCCc------------
Confidence 4556778889999999999999999999999999999988 454 2212
Q ss_pred cCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHh------h---hhcCCCCccc----------
Q 021929 96 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF------Q---TLTGKRPRYK---------- 156 (305)
Q Consensus 96 ~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f------~---~~~g~~prfr---------- 156 (305)
.+..++++...++.++.++|+++|+.+|++|+++++++.+.++.... . ..+|..+|+|
T Consensus 50 ---~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~ 126 (250)
T TIGR00552 50 ---NHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANK 126 (250)
T ss_pred ---eEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 24444454445677899999999999999999999999887542211 0 0122223222
Q ss_pred ------------------------------------------------------------------ccccccCCChhhhh
Q 021929 157 ------------------------------------------------------------------LDEVDMGMTYEELS 170 (305)
Q Consensus 157 ------------------------------------------------------------------tDE~dmGmtY~eLd 170 (305)
+||+||||||+++|
T Consensus 127 ~g~~~laTgh~~E~~~G~~t~~gd~~~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~psa~L~~~q~de~~~g~~y~~~D 206 (250)
T TIGR00552 127 HNLLVLGTGNKSELMLGYFTKYGDGGCDIAPIGDLFKTQVYELAKRLNVPERIIEKPPTADLFDGQTDETELGITYDELD 206 (250)
T ss_pred cCCEEEcCCcHHHHhhCCeecccCCccCccccCCCcHHHHHHHHHHHCccHHHhCCCCCcCCCCCCcCHHHhCcCHHHHH
Confidence 89999999999999
Q ss_pred hhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcc
Q 021929 171 VYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY 228 (305)
Q Consensus 171 ~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~ 228 (305)
.|.+..... ..+++ +.|+++.++|.+|+|||. +||++
T Consensus 207 ~~l~~~~~~-----------------~~~~~---~~~~~i~~~~~~~~~kr~-~~~~~ 243 (250)
T TIGR00552 207 DYLKGIEEL-----------------SQTVQ---EVVKRIESLVQKSEHKRR-LPATI 243 (250)
T ss_pred HHHHHHhhc-----------------CCCHH---HHHHHHHHHHHHHHhccc-CCCCc
Confidence 886543321 23333 467788899999999996 67765
No 12
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.86 E-value=6.4e-21 Score=183.37 Aligned_cols=94 Identities=26% Similarity=0.301 Sum_probs=82.5
Q ss_pred CcHHHHHhcHHHHHHHHHHH-hCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcc
Q 021929 13 SPEEEIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 91 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrr-sg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~ 91 (305)
.+.+++...+..||.+++++ .+.++++|+||||+|||++|+++ +++ ++..
T Consensus 10 ~~~~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa-------~~a--------------~g~~-------- 60 (326)
T PRK00876 10 IDAAAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALC-------VRA--------------LGKE-------- 60 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHh--------------hCCC--------
Confidence 45567888899999999999 88999999999999999999998 555 3433
Q ss_pred hhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHH
Q 021929 92 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 142 (305)
Q Consensus 92 ~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~ 142 (305)
++++++|++..++..+.++|+.+|+.+|++|+.++|+++++++.
T Consensus 61 -------~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~ 104 (326)
T PRK00876 61 -------RVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALG 104 (326)
T ss_pred -------cEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhh
Confidence 48999999877788999999999999999999999999988764
No 13
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.59 E-value=1.2e-15 Score=148.57 Aligned_cols=111 Identities=27% Similarity=0.398 Sum_probs=76.1
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCC-----
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS----- 110 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nS----- 110 (305)
++++||||||||||++|+|+ +++ |++ ++++||-....
T Consensus 1 ~kV~vamSGGVDSsvaA~LL-------k~~---------------G~~----------------V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALL-------KEQ---------------GYD----------------VIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHH-------HHC---------------T-E----------------EEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHH-------Hhh---------------ccc----------------ceEEEEEEeccccccC
Confidence 36899999999999999999 555 655 99999997754
Q ss_pred ----CHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhh--hcCCCC----------ccc-----ccccccCCChhh
Q 021929 111 ----SQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRP----------RYK-----LDEVDMGMTYEE 168 (305)
Q Consensus 111 ----s~et~~~A~~LA~~iGi~h~~i~Id~~v~a-~~~~f~~--~~g~~p----------rfr-----tDE~dmGmtY~e 168 (305)
++++.++|+.+|++|||+|+++|+.+.|.. +++.|.. ..|+|| ||. .++ .+|.+|.+
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~-~~g~d~iA 121 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADE-GLGADYIA 121 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHT-TTT-SEEE
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHh-hcCCCeec
Confidence 246789999999999999999999998885 5566654 345555 677 222 49999999
Q ss_pred hhhhheeeeccccChHH
Q 021929 169 LSVYGRLRKIFHCGPVS 185 (305)
Q Consensus 169 Ld~y~rlrk~~~~gP~~ 185 (305)
||||+|+......|.+.
T Consensus 122 TGHYAri~~~~~~~~~~ 138 (356)
T PF03054_consen 122 TGHYARIEKDEKNGRYR 138 (356)
T ss_dssp ---SEEEEEES-TTEEE
T ss_pred cceeEEEEeeccCCceE
Confidence 99999998885455443
No 14
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.6e-14 Score=140.19 Aligned_cols=107 Identities=25% Similarity=0.331 Sum_probs=85.1
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC-----
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 109 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n----- 109 (305)
..+++++||||||||++|+|+ +++ |++ |.+++|-...
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lL-------k~Q---------------Gye----------------ViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLL-------KEQ---------------GYE----------------VIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEEeeccCCCC
Confidence 467999999999999999999 565 555 8999998654
Q ss_pred --CCHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhh------------hcCCCCccc---ccccccCCChhhhhh
Q 021929 110 --SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT------------LTGKRPRYK---LDEVDMGMTYEELSV 171 (305)
Q Consensus 110 --Ss~et~~~A~~LA~~iGi~h~~i~Id~~v~a-~~~~f~~------------~~g~~prfr---tDE~dmGmtY~eLd~ 171 (305)
++.++..+|+.+|++|||+|+.+|+.+.|.. +...|.. .||+.-+|+ .-..++|.+|.++||
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGH 124 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGH 124 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEee
Confidence 5678999999999999999999999987774 4455544 244444777 112239999999999
Q ss_pred hheeeecc
Q 021929 172 YGRLRKIF 179 (305)
Q Consensus 172 y~rlrk~~ 179 (305)
|+|++...
T Consensus 125 Yar~~~~~ 132 (356)
T COG0482 125 YARQREDE 132 (356)
T ss_pred eEeeecCC
Confidence 99998744
No 15
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.18 E-value=3.4e-11 Score=117.69 Aligned_cols=103 Identities=26% Similarity=0.378 Sum_probs=76.2
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC--CCHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQE 113 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n--Ss~e 113 (305)
.+++|+||||+||+++|+++ .+. +.+ +++++|...+ .+.+
T Consensus 6 ~kVlValSGGVDSsvaa~LL-------~~~---------------G~~----------------V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLL-------LEA---------------GYE----------------VTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEecCCCCCChH
Confidence 57999999999999999999 333 433 8899997543 2567
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhh--hcCCCC----------ccc---ccccccCCChhhhhhhheee
Q 021929 114 TRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRP----------RYK---LDEVDMGMTYEELSVYGRLR 176 (305)
Q Consensus 114 t~~~A~~LA~~iGi~h~~i~Id~~v~a-~~~~f~~--~~g~~p----------rfr---tDE~dmGmtY~eLd~y~rlr 176 (305)
+.++|+++|+++|++|+.+|+++.+.. +.+.|.. ..|.+| ||. .-..++|.+|.+++||+|+.
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~ 126 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQ 126 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccee
Confidence 899999999999999999999876653 3333332 124443 554 11225999999999999864
No 16
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.3e-10 Score=111.03 Aligned_cols=105 Identities=22% Similarity=0.334 Sum_probs=78.8
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC-----
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 109 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n----- 109 (305)
...|+|+||||||||++|.|+ ..+ |+ ++.++||....
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll-------~~~---------------g~----------------~v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLL-------AAR---------------GY----------------NVTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHH-------Hhc---------------CC----------------CeeEEeeecccccccc
Confidence 467999999999999999999 343 43 38999998653
Q ss_pred ----CCHHHHHHHHHHHHHhCCcEEEEechH-----HHHHHHHHhhh--------hcCCCCccc----ccccccCCChhh
Q 021929 110 ----SSQETRMRAKKLADEIGSWHLDVSIDT-----VVSAFLSLFQT--------LTGKRPRYK----LDEVDMGMTYEE 168 (305)
Q Consensus 110 ----Ss~et~~~A~~LA~~iGi~h~~i~Id~-----~v~a~~~~f~~--------~~g~~prfr----tDE~dmGmtY~e 168 (305)
+-+.+.++|+.+|++|+|+.+.+|... +|+.+++.++. .||+..||. -.+++||.+|.+
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~la 126 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLA 126 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEE
Confidence 236788999999999999999999965 44444444431 234444665 234479999999
Q ss_pred hhhhheeee
Q 021929 169 LSVYGRLRK 177 (305)
Q Consensus 169 Ld~y~rlrk 177 (305)
++||+|...
T Consensus 127 tGHYAr~~~ 135 (377)
T KOG2805|consen 127 TGHYARVVL 135 (377)
T ss_pred eeeeeeeec
Confidence 999998644
No 17
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.04 E-value=3.3e-10 Score=110.89 Aligned_cols=100 Identities=21% Similarity=0.318 Sum_probs=73.6
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
++++|++|||+||+++|+++ .+. +.+ +++++|... .++.
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL-------~~~---------------G~e----------------V~av~~~~~---~~e~ 44 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLML-------QEQ---------------GYE----------------IVGVTMRVW---GDEP 44 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHH-------HHc---------------CCc----------------EEEEEecCc---chhH
Confidence 68999999999999999987 232 433 889999753 2345
Q ss_pred HHHHHHHHHhCCcEEEEechHHHH-HHHHHhhh--hcCCCC----------ccc---ccccccCCChhhhhhhheee
Q 021929 116 MRAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRP----------RYK---LDEVDMGMTYEELSVYGRLR 176 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~~v~-a~~~~f~~--~~g~~p----------rfr---tDE~dmGmtY~eLd~y~rlr 176 (305)
++|+.+|+++|++|+.+|+++.+. .++..|.. ..|++| ||+ .-..++|.+|.+++||+|+.
T Consensus 45 ~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~ 121 (362)
T PRK14664 45 QDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLE 121 (362)
T ss_pred HHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccc
Confidence 789999999999999999997665 34443322 345544 455 11235899999999999764
No 18
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.03 E-value=4.3e-10 Score=109.56 Aligned_cols=102 Identities=24% Similarity=0.346 Sum_probs=73.3
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCC--------
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-------- 108 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~-------- 108 (305)
.++|+||||+||+++|.++ .+. +.+ +++++|...
T Consensus 2 kVlValSGGvDSsv~a~lL-------~~~---------------G~~----------------V~~v~~~~~~~~~~~~~ 43 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLL-------KQQ---------------GYE----------------VVGVFMKNWEEDDKNDG 43 (352)
T ss_pred eEEEEEeCCHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEEcccccccccc
Confidence 5899999999999999998 343 332 888999421
Q ss_pred --CCCHHHHHHHHHHHHHhCCcEEEEechHHHH-HHHHHhhh--hcCCCC----------ccc--cc-cccc-CCChhhh
Q 021929 109 --NSSQETRMRAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRP----------RYK--LD-EVDM-GMTYEEL 169 (305)
Q Consensus 109 --nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~-a~~~~f~~--~~g~~p----------rfr--tD-E~dm-GmtY~eL 169 (305)
..+.++.++|+++|+++|++|+.+|+++.+. .+...|.. ..|.+| ||+ .+ ..++ |.+|.++
T Consensus 44 ~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IAT 123 (352)
T TIGR00420 44 HGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIAT 123 (352)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1346788999999999999999999987664 34444433 234444 455 11 1244 9999999
Q ss_pred hhhheee
Q 021929 170 SVYGRLR 176 (305)
Q Consensus 170 d~y~rlr 176 (305)
+||++..
T Consensus 124 GHya~~~ 130 (352)
T TIGR00420 124 GHYARIA 130 (352)
T ss_pred CCcceEe
Confidence 9999753
No 19
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.01 E-value=7.5e-10 Score=107.53 Aligned_cols=103 Identities=26% Similarity=0.387 Sum_probs=73.9
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC-------
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 109 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n------- 109 (305)
.++|+||||+||+++|+++ .+. +.+ +++++|....
T Consensus 1 kVlValSGGvDSsvla~lL-------~~~---------------g~~----------------v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALL-------KEQ---------------GYE----------------VIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHH-------HHc---------------CCc----------------EEEEEEecccccccccC
Confidence 4789999999999999988 332 332 7888886532
Q ss_pred -CCHHHHHHHHHHHHHhCCcEEEEechHHHH-HHHHHhhh------------hcCCCCccc---ccccccCCChhhhhhh
Q 021929 110 -SSQETRMRAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT------------LTGKRPRYK---LDEVDMGMTYEELSVY 172 (305)
Q Consensus 110 -Ss~et~~~A~~LA~~iGi~h~~i~Id~~v~-a~~~~f~~------------~~g~~prfr---tDE~dmGmtY~eLd~y 172 (305)
++.++.++|+++|+++|++|+.+|+++.+. .++..|.. .||+..||+ .-..++|.+|.+++||
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHy 122 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHY 122 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCc
Confidence 356788999999999999999999987554 23333322 234444555 1223689999999999
Q ss_pred heeee
Q 021929 173 GRLRK 177 (305)
Q Consensus 173 ~rlrk 177 (305)
++...
T Consensus 123 a~d~~ 127 (349)
T cd01998 123 ARIEE 127 (349)
T ss_pred CCeee
Confidence 88643
No 20
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.99 E-value=7.6e-10 Score=107.47 Aligned_cols=102 Identities=27% Similarity=0.454 Sum_probs=73.8
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC-------
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 109 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n------- 109 (305)
+++|+||||+||+++|.++ .+. +.+ +.+++|....
T Consensus 2 kVlValSGGvDSsvla~lL-------~~~---------------G~~----------------V~~v~~~~~~~~~~~~~ 43 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALL-------KEQ---------------GYE----------------VIGVFMKLWDDDDETGK 43 (346)
T ss_pred eEEEEecCCHHHHHHHHHH-------HHc---------------CCc----------------EEEEEEeCCCccccccc
Confidence 6899999999999999988 332 322 7788887532
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhh--hcCCCC----------ccc---ccccccCCChhhhh
Q 021929 110 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRP----------RYK---LDEVDMGMTYEELS 170 (305)
Q Consensus 110 ---Ss~et~~~A~~LA~~iGi~h~~i~Id~~v~a-~~~~f~~--~~g~~p----------rfr---tDE~dmGmtY~eLd 170 (305)
++.++.++|+++|+++|++|+.+++++.+.. ++..|.. ..|.+| ||+ .-..++|.+|.+++
T Consensus 44 ~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATG 123 (346)
T PRK00143 44 GGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATG 123 (346)
T ss_pred CCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEee
Confidence 2567889999999999999999999876642 3333322 234444 454 12235899999999
Q ss_pred hhheee
Q 021929 171 VYGRLR 176 (305)
Q Consensus 171 ~y~rlr 176 (305)
||++..
T Consensus 124 H~a~d~ 129 (346)
T PRK00143 124 HYARIR 129 (346)
T ss_pred eecccc
Confidence 999754
No 21
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.92 E-value=7.8e-09 Score=95.90 Aligned_cols=76 Identities=30% Similarity=0.349 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEE
Q 021929 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 104 (305)
Q Consensus 25 ~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~y 104 (305)
-|.++|+.. ++++|++|||+||+++++++ .+. + . .+.+++
T Consensus 4 ~l~~~l~~~--~~vlVa~SGGvDSs~ll~la-------~~~---------------g-~---------------~v~av~ 43 (252)
T TIGR00268 4 NLRNFLKEF--KKVLIAYSGGVDSSLLAAVC-------SDA---------------G-T---------------EVLAIT 43 (252)
T ss_pred HHHHHHHhc--CCEEEEecCcHHHHHHHHHH-------HHh---------------C-C---------------CEEEEE
Confidence 466777774 68999999999999999988 332 3 2 278888
Q ss_pred EcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHH
Q 021929 105 MGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA 140 (305)
Q Consensus 105 M~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a 140 (305)
+.+...+.++.+.|+++|+++|++|+.++++++...
T Consensus 44 ~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~ 79 (252)
T TIGR00268 44 VVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMINP 79 (252)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHHH
Confidence 887666778899999999999999999999876543
No 22
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.85 E-value=8.1e-10 Score=115.74 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=73.8
Q ss_pred ccccccCCChhhhhhhheeeeccccChHHHHHHHHHhhCC---------------CCCHHHHHHHHHHHHHHHHhhhccc
Q 021929 157 LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA---------------RLTPSEVAEKVKHFFKYYSINRHKM 221 (305)
Q Consensus 157 tDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~---------------~~s~~eia~kVk~ff~~~~~NrHKr 221 (305)
+||++|| ||+.+|.+.+.....+.+|..++.++.+.|++ .+++++|..+++.||+++.+|||||
T Consensus 559 ~ded~lg-pY~~~D~~l~~~~~~~~~~~~i~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~~~~~qfKR 637 (679)
T PRK02628 559 STEDIIG-PYELQDFFLYYFLRYGFRPSKIAFLAWHAWKDAERGAWPGFPEDKRPAYDLATIKKWLEVFLRRFFSSQFKR 637 (679)
T ss_pred cchhccC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccCCCCcchhcccCCHHHHHHHHHHHcchhchHhhCc
Confidence 7899998 99999999998888899999999999999986 7999999999999999999999999
Q ss_pred ccCCCcccccc-cCCC
Q 021929 222 TVLTPSYHAES-YSPE 236 (305)
Q Consensus 222 t~l~Ps~h~e~-yspD 236 (305)
+++||++|+.+ .|++
T Consensus 638 ~~~p~g~kv~~~~~ls 653 (679)
T PRK02628 638 SALPNGPKVGSGGSLS 653 (679)
T ss_pred ccCCCCCeeCCCCCCC
Confidence 99999999999 7744
No 23
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.83 E-value=1.1e-08 Score=101.24 Aligned_cols=101 Identities=23% Similarity=0.286 Sum_probs=74.6
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
++++|++|||+|||+++.++ .+. +.+ ++++++-+...+.++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l-------~e~---------------G~~----------------Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYL-------QER---------------GYA----------------VHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHH-------HHc---------------CCc----------------EEEEEEEeCCCCHHHH
Confidence 57999999999999999988 332 433 8888887766557899
Q ss_pred HHHHHHHHHhCC-cEEEEechHHHHH-HHHHhhh----hcCCCC--------ccc---ccccccCCChhhhhhhhe
Q 021929 116 MRAKKLADEIGS-WHLDVSIDTVVSA-FLSLFQT----LTGKRP--------RYK---LDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 116 ~~A~~LA~~iGi-~h~~i~Id~~v~a-~~~~f~~----~~g~~p--------rfr---tDE~dmGmtY~eLd~y~r 174 (305)
++|+++|+++|+ +|+++|+++.+.. ++..|.. ..|.+| +|+ .-..++|.+|.+.|..++
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~y~G~yPl~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchhhcCCCCCccccHHHHHHHHHHHHHHCCCCEEEecCcCC
Confidence 999999999998 6999999997764 6554432 124444 444 112257899998887644
No 24
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.82 E-value=1.3e-08 Score=95.11 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=64.0
Q ss_pred HHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEE
Q 021929 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 104 (305)
Q Consensus 25 ~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~y 104 (305)
-|..|++..+ +++|++|||+||+++|.++ .++ +| + ++.+|+
T Consensus 9 ~l~~~ik~~~--kv~vAfSGGvDSslLa~la-------~~~--------------lG-~---------------~v~AvT 49 (269)
T COG1606 9 RLKKAIKEKK--KVVVAFSGGVDSSLLAKLA-------KEA--------------LG-D---------------NVVAVT 49 (269)
T ss_pred HHHHHHhhcC--eEEEEecCCccHHHHHHHH-------HHH--------------hc-c---------------ceEEEE
Confidence 3566776664 8999999999999999999 577 55 4 488898
Q ss_pred EcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 021929 105 MGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 105 M~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v 138 (305)
.-+...+....+.|+.+|++||+.|..++++.+-
T Consensus 50 v~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 50 VDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred EecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 8888888999999999999999999999987654
No 25
>PLN02347 GMP synthetase
Probab=98.80 E-value=2.8e-08 Score=101.91 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhC-CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEE
Q 021929 23 GCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 101 (305)
Q Consensus 23 a~~L~DyLrrsg-~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~ 101 (305)
..++.+.....+ .++++|+||||+||+++|+++ .++ +| + .++
T Consensus 216 ~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~-------~~a--------------lG-~---------------~v~ 258 (536)
T PLN02347 216 EEQIELIKATVGPDEHVICALSGGVDSTVAATLV-------HKA--------------IG-D---------------RLH 258 (536)
T ss_pred HHHHHHHHHHhccCCeEEEEecCChhHHHHHHHH-------HHH--------------hC-C---------------cEE
Confidence 345555555666 345999999999999999999 576 45 3 389
Q ss_pred EEEEcCCCCCHHHHHHH-HHHHHHhCCcEEEEechHHH
Q 021929 102 TVFMGSENSSQETRMRA-KKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 102 t~yM~t~nSs~et~~~A-~~LA~~iGi~h~~i~Id~~v 138 (305)
++++.+...+..+.++| +.+|+++|++|+.+|+++.|
T Consensus 259 av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~f 296 (536)
T PLN02347 259 CVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERF 296 (536)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 99999765554445555 88999999999999999743
No 26
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.73 E-value=5.8e-08 Score=93.34 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEE
Q 021929 22 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 101 (305)
Q Consensus 22 ~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~ 101 (305)
...+|.+.+. .++++|++|||+||+++|+++ .++ +| + .++
T Consensus 6 ~~~~l~~~v~---~~kVvValSGGVDSsvla~ll-------~~~--------------~G-~---------------~v~ 45 (311)
T TIGR00884 6 AVEEIREQVG---DAKVIIALSGGVDSSVAAVLA-------HRA--------------IG-D---------------RLT 45 (311)
T ss_pred HHHHHHHHhC---CCcEEEEecCChHHHHHHHHH-------HHH--------------hC-C---------------CEE
Confidence 3456667764 378999999999999999998 455 44 3 389
Q ss_pred EEEEcCCCCCHHHHHHHHHH-HHHhCCcEEEEechHHH
Q 021929 102 TVFMGSENSSQETRMRAKKL-ADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 102 t~yM~t~nSs~et~~~A~~L-A~~iGi~h~~i~Id~~v 138 (305)
++++.+......+.+++.++ ++++|++|+.+++++.|
T Consensus 46 av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f 83 (311)
T TIGR00884 46 CVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF 83 (311)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 99998765555667777665 55899999999999754
No 27
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.71 E-value=5.1e-08 Score=96.70 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=72.5
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
.++++|++|||+||+++|.++ .+. ++.+ ++++++-+... ++
T Consensus 2 ~~kVvva~SGGlDSsvla~~l-------~e~--------------lG~e----------------Viavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWL-------KET--------------YGCE----------------VIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHH-------HHh--------------hCCe----------------EEEEEEecCCH--HH
Confidence 357999999999999999988 444 3433 78888876543 68
Q ss_pred HHHHHHHHHHhCC-cEEEEechHHHH-HHHHHhhh----hcCCCCc---------cc---ccccccCCChhhhhhhhe
Q 021929 115 RMRAKKLADEIGS-WHLDVSIDTVVS-AFLSLFQT----LTGKRPR---------YK---LDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 115 ~~~A~~LA~~iGi-~h~~i~Id~~v~-a~~~~f~~----~~g~~pr---------fr---tDE~dmGmtY~eLd~y~r 174 (305)
.+.|+++|+++|+ .|+++|+.+.|. .++..+.. ..|++|. |+ .-..++|++|.+.+++++
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~k 120 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGK 120 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 9999999999998 688889997664 34433322 2356652 22 112358999999999874
No 28
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.67 E-value=1e-07 Score=94.49 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
.++++|++|||+||++++.++ .+. ++.+ .++++++... ...++
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL-------~e~--------------~g~~---------------~Viav~vd~g-~~~~e 44 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLL-------KEK--------------YGYD---------------EVITVTVDVG-QPEEE 44 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHH-------HHh--------------cCCC---------------EEEEEEEECC-CChHH
Confidence 367999999999999999988 344 3321 2788888753 33468
Q ss_pred HHHHHHHHHHhCCcEEEEechHHHH-HHHHH-hhh---hcCCCC---------ccc---ccccccCCChhhhhhhhe
Q 021929 115 RMRAKKLADEIGSWHLDVSIDTVVS-AFLSL-FQT---LTGKRP---------RYK---LDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~~v~-a~~~~-f~~---~~g~~p---------rfr---tDE~dmGmtY~eLd~y~r 174 (305)
.+.|+++|+++|++|+++|+++.+. .++.. +.. -.| .| +++ .-..+.|++|.+++++++
T Consensus 45 ~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~~~~g-Ypl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 45 IKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANALYEG-YPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCccccC-CcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 8899999999999999999996443 44432 221 123 22 222 112357999999999876
No 29
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.62 E-value=1.4e-07 Score=96.11 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=62.8
Q ss_pred HHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhc
Q 021929 17 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFA 96 (305)
Q Consensus 17 Ei~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~ 96 (305)
.+......+|.++++. ++++|++|||+||+++|+++ .++ ++ .
T Consensus 200 ~~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll-------~~~--------------lg-~------------- 241 (511)
T PRK00074 200 NFIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLL-------HKA--------------IG-D------------- 241 (511)
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHH-------HHH--------------hC-C-------------
Confidence 3444455667777653 78999999999999999999 455 34 3
Q ss_pred CCeEEEEEEcCCCCCHHHHHHHHH-HHHHhCCcEEEEechHHH
Q 021929 97 KRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 97 ~~~l~t~yM~t~nSs~et~~~A~~-LA~~iGi~h~~i~Id~~v 138 (305)
.++++++.+......+.++|.+ +|+++|++|+.+++++.+
T Consensus 242 --~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f 282 (511)
T PRK00074 242 --QLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRF 282 (511)
T ss_pred --ceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHH
Confidence 3899999876544556777775 789999999999998754
No 30
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.61 E-value=1.2e-07 Score=84.53 Aligned_cols=62 Identities=24% Similarity=0.331 Sum_probs=50.7
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 117 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~ 117 (305)
++|+||||+||+++++++ .+. +. .++++++.......++.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~-------~~~---------------g~----------------~v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIA-------KDE---------------GY----------------EVHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHH-------HHc---------------CC----------------cEEEEEEECCCCCHHHHHH
Confidence 479999999999999887 232 32 2788888766556778899
Q ss_pred HHHHHHHhCCcEEEEechHH
Q 021929 118 AKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 118 A~~LA~~iGi~h~~i~Id~~ 137 (305)
|+++|+++|++|+.++++.+
T Consensus 43 a~~~a~~lgi~~~~~~~~~~ 62 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSLL 62 (201)
T ss_pred HHHHHHHhCCCeEEEechhh
Confidence 99999999999999999853
No 31
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.59 E-value=1.7e-07 Score=83.17 Aligned_cols=64 Identities=27% Similarity=0.234 Sum_probs=51.9
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 117 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~ 117 (305)
++|++|||+||++++.++ .+. +.. .++++++.....+.++.+.
T Consensus 1 vvva~SGG~DS~~ll~ll-------~~~---------------~~~---------------~v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAA-------VDA---------------LGD---------------RVLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHH-------HHH---------------hCC---------------cEEEEEeCCCCCCHHHHHH
Confidence 589999999999999988 343 221 2677887766556789999
Q ss_pred HHHHHHHhCCcEEEEechHHH
Q 021929 118 AKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 118 A~~LA~~iGi~h~~i~Id~~v 138 (305)
|+++|+++|++|+.+++++..
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~~ 64 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDELD 64 (202)
T ss_pred HHHHHHHcCCcEEEEeCCccc
Confidence 999999999999999998643
No 32
>PRK00919 GMP synthase subunit B; Validated
Probab=98.56 E-value=3.4e-07 Score=88.00 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=64.6
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhh
Q 021929 16 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 95 (305)
Q Consensus 16 eEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~ 95 (305)
+.+......-|.+.++ .++++|++|||+||+++|.++ .++ +|.
T Consensus 5 ~~~~~~~~~~l~~~~~---~~kVlVa~SGGVDSsvla~la-------~~~--------------lG~------------- 47 (307)
T PRK00919 5 EKFIEEAIEEIREEIG---DGKAIIALSGGVDSSVAAVLA-------HRA--------------IGD------------- 47 (307)
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEecCCHHHHHHHHHH-------HHH--------------hCC-------------
Confidence 4445555566777664 378999999999999999998 455 442
Q ss_pred cCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 021929 96 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 96 ~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v 138 (305)
.++++++-+......+.+.|+++|+++ ++|..+++++.+
T Consensus 48 ---~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f 86 (307)
T PRK00919 48 ---RLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF 86 (307)
T ss_pred ---eEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH
Confidence 388998887666678899999999998 999999998754
No 33
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.55 E-value=4.4e-07 Score=77.06 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.0
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
.++|+||||+||+++++++ ++. +.. .+.++++.....+.++.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~-------~~~---------------~~~---------------~v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLL-------KEK---------------YGL---------------NPLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHH-------HHH---------------hCC---------------ceEEEEeCCCCCCHHHHH
Confidence 5799999999999999988 343 211 256666665455677899
Q ss_pred HHHHHHHH-hCCcEEEEechHHHHHHHH
Q 021929 117 RAKKLADE-IGSWHLDVSIDTVVSAFLS 143 (305)
Q Consensus 117 ~A~~LA~~-iGi~h~~i~Id~~v~a~~~ 143 (305)
.|+.+|+. +++.+..+++++.......
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~~~ 73 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQLA 73 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHHHH
Confidence 99999999 5555566666655544333
No 34
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.53 E-value=3.6e-07 Score=81.80 Aligned_cols=66 Identities=30% Similarity=0.442 Sum_probs=49.3
Q ss_pred CCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHH
Q 021929 34 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 113 (305)
Q Consensus 34 g~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~e 113 (305)
....+.+.||||+||+++|+++. +. ... .+.++.++.......
T Consensus 16 ~~~~i~~~LSGGlDSs~i~~~~~-------~~---------------~~~---------------~~~~~t~~~~~~~~~ 58 (255)
T PF00733_consen 16 SDKPIGILLSGGLDSSAIAALAA-------RQ---------------GGP---------------PIKTFTIGFEDDDYD 58 (255)
T ss_dssp CTSEEEEE--SSHHHHHHHHHHH-------HT---------------CCS---------------EEEEEEEECSSCC--
T ss_pred cCCCEEEECCCChhHHHHHHHHH-------Hh---------------hCC---------------ceeEEEEEcCCCcch
Confidence 45678999999999999999993 31 112 478888888777766
Q ss_pred HHHHHHHHHHHhCCcEEEEechH
Q 021929 114 TRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 114 t~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
+...|+.+|+.+|++|+.++++.
T Consensus 59 e~~~a~~va~~~~~~~~~~~~~~ 81 (255)
T PF00733_consen 59 EREYARKVARHLGLEHHEIELDP 81 (255)
T ss_dssp HHHHHHHHHHHHT-EEEEEEE-H
T ss_pred hHHHHHHHhcccccccceeeech
Confidence 89999999999999999998876
No 35
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.53 E-value=3.4e-07 Score=87.51 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=53.4
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
+++|++|||+||+++|.++ .++ +|. .++++++-+......+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll-------~~~--------------lG~----------------~v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLL-------HKA--------------IGD----------------RLTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHH-------HHH--------------hCC----------------cEEEEEecCCCCChHHHH
Confidence 4789999999999999999 455 342 288999887655567889
Q ss_pred HHHHHHHHhCC-cEEEEechHHH
Q 021929 117 RAKKLADEIGS-WHLDVSIDTVV 138 (305)
Q Consensus 117 ~A~~LA~~iGi-~h~~i~Id~~v 138 (305)
+++++|+++|+ +|+.+++++.|
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e~f 66 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASERF 66 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcHHH
Confidence 99999999997 99999998643
No 36
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.52 E-value=3e-07 Score=85.14 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=52.2
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
++++|.+|||+||+++++++ .+. + + .++++++-+......+.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a-------~~~---------------~-~---------------~v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQA-------LQQ---------------Y-D---------------EVHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHH-------Hhc---------------C-C---------------eEEEEEEEeCCCCHHHH
Confidence 47999999999999999887 232 2 2 27777777665567899
Q ss_pred HHHHHHHHHhCCc-EEEEechHH
Q 021929 116 MRAKKLADEIGSW-HLDVSIDTV 137 (305)
Q Consensus 116 ~~A~~LA~~iGi~-h~~i~Id~~ 137 (305)
+.|+.+|+.+|++ |+++|++.+
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~l 66 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTLL 66 (231)
T ss_pred HHHHHHHHHcCCCeEEEEecccc
Confidence 9999999999996 999999964
No 37
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.44 E-value=6.4e-07 Score=82.04 Aligned_cols=64 Identities=27% Similarity=0.324 Sum_probs=46.3
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
..+.+.||||+||+++|+++ .+. +... -...++..+ ....++.
T Consensus 16 ~~v~~~LSGGlDSs~va~~~-------~~~---------------~~~~-------------~~~~~~~~~--~~~~~e~ 58 (269)
T cd01991 16 VPVGVLLSGGLDSSLVAALA-------ARL---------------LPEP-------------VKTFSIGFG--FEGSDER 58 (269)
T ss_pred CceEEeecccHHHHHHHHHH-------HHh---------------hCCC-------------CceEEEeeC--CCCCChH
Confidence 46889999999999999988 333 2111 013444444 3334568
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 021929 116 MRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~ 136 (305)
..|+.+|+.+|++|+.++++.
T Consensus 59 ~~a~~~a~~l~~~~~~~~~~~ 79 (269)
T cd01991 59 EYARRVAEHLGTEHHEVEFTP 79 (269)
T ss_pred HHHHHHHHHhCCcceEEEcCH
Confidence 999999999999999999875
No 38
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.44 E-value=1.3e-06 Score=84.81 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=52.8
Q ss_pred HHHHHhCC--CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEE
Q 021929 28 DYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 105 (305)
Q Consensus 28 DyLrrsg~--~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM 105 (305)
+.+|+.+. -.++||||||+||+++|.++ ++. ++. +++++++
T Consensus 50 ~~~k~~~~~~yD~iV~lSGGkDSs~la~ll-------~~~--------------~gl----------------~~l~vt~ 92 (343)
T TIGR03573 50 DKIKKKGGGRYDCIIGVSGGKDSTYQAHVL-------KKK--------------LGL----------------NPLLVTV 92 (343)
T ss_pred HHHHhcCCCCCCEEEECCCCHHHHHHHHHH-------HHH--------------hCC----------------ceEEEEE
Confidence 34444442 35999999999999999877 344 332 2455555
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 106 GSENSSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 106 ~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
.....++...+.++.+|+.+|++|+.+.++.
T Consensus 93 ~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~ 123 (343)
T TIGR03573 93 DPGWNTELGVKNLNNLIKKLGFDLHTITINP 123 (343)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeCCH
Confidence 5444567788899999999999999998874
No 39
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.44 E-value=6.7e-07 Score=82.38 Aligned_cols=67 Identities=25% Similarity=0.274 Sum_probs=53.2
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
..+.+|-||||.||+++|+++ .+. +. .++++.+-.-+-...+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a-------~~~---------------~~----------------ev~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWA-------KKE---------------GY----------------EVHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHH-------Hhc---------------CC----------------EEEEEEeeCCCCcHHH
Confidence 357899999999999999988 444 32 2666666554445789
Q ss_pred HHHHHHHHHHhCCcEEEEechHHHH
Q 021929 115 RMRAKKLADEIGSWHLDVSIDTVVS 139 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~~v~ 139 (305)
.+.|+++|+.+|++|++||++-+-+
T Consensus 44 le~A~~iak~lgv~~~iid~~~~~~ 68 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDLLGE 68 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhHHhh
Confidence 9999999999999999999986554
No 40
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.42 E-value=8.3e-07 Score=80.78 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=47.8
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
+++|.+|||+||+++++++ .+. +. .+++++.-.......+.+
T Consensus 1 Kavvl~SGG~DSt~~l~~~-------~~~---------------~~----------------~v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWA-------KKE---------------GY----------------EVYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHH----------------S----------------EEEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHc---------------CC----------------eEEEEEEECCCCCHHHHH
Confidence 4689999999999999988 343 32 266666665555778999
Q ss_pred HHHHHHHHhCC-cEEEEechHHHH
Q 021929 117 RAKKLADEIGS-WHLDVSIDTVVS 139 (305)
Q Consensus 117 ~A~~LA~~iGi-~h~~i~Id~~v~ 139 (305)
.|+++|+.+|+ +|+.||++.+.+
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~~ 66 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLKE 66 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHHH
T ss_pred HHHHHHHHhCCCCCEEeeHHHHHh
Confidence 99999999999 999999996543
No 41
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.41 E-value=8.9e-07 Score=91.87 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=65.6
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCCc--eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCc
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGASG--FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 90 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~g--~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~ 90 (305)
.+++|....+...|.+.+++.-.+. +.+.||||+||+++|+++. +. +..
T Consensus 234 ~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~-------~~---------------~~~------- 284 (628)
T TIGR03108 234 LSEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMA-------GL---------------SDT------- 284 (628)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHH-------Hh---------------cCC-------
Confidence 4577778888888888887754444 4566999999999998872 22 212
Q ss_pred chhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHH
Q 021929 91 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 91 ~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~ 137 (305)
.+.|+.++..++...+...|+.+|+.+|+.|+++.+++.
T Consensus 285 --------~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~ 323 (628)
T TIGR03108 285 --------PVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPD 323 (628)
T ss_pred --------CCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHH
Confidence 156666665555557889999999999999999998753
No 42
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.37 E-value=1.3e-06 Score=86.28 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=53.4
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcC-CCCCHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS-ENSSQETR 115 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t-~nSs~et~ 115 (305)
.++++||||+||+++|.++ .+. |. .++++++.+ ...++.+.
T Consensus 178 kvvvllSGGiDS~vaa~l~-------~k~---------------G~----------------~v~av~~~~~~~~~~~~~ 219 (394)
T PRK01565 178 KALLLLSGGIDSPVAGYLA-------MKR---------------GV----------------EIEAVHFHSPPYTSERAK 219 (394)
T ss_pred CEEEEECCChhHHHHHHHH-------HHC---------------CC----------------EEEEEEEeCCCCCcHHHH
Confidence 4677799999999999988 232 32 277777754 35667788
Q ss_pred HHHHHHHHHhC-----CcEEEEechHHHHHHHH
Q 021929 116 MRAKKLADEIG-----SWHLDVSIDTVVSAFLS 143 (305)
Q Consensus 116 ~~A~~LA~~iG-----i~h~~i~Id~~v~a~~~ 143 (305)
+.++++|+.++ ++|+++|++++...+..
T Consensus 220 ~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~~ 252 (394)
T PRK01565 220 EKVIDLARILAKYGGRIKLHVVPFTEIQEEIKK 252 (394)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECHHHHHHHhh
Confidence 99999999995 99999999998765543
No 43
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.35 E-value=1.8e-06 Score=74.59 Aligned_cols=70 Identities=21% Similarity=0.131 Sum_probs=51.6
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC--CCHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQET 114 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n--Ss~et 114 (305)
.++|++|||+||++++.++ .+.... .... -.++++++.... .+.++
T Consensus 1 ~v~v~~SGG~DS~~ll~~l-------~~~~~~-----------~~~~--------------~~~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVL-------KKLQRR-----------YPYG--------------FELEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHhh-----------cCCC--------------eEEEEEEEECCCCCCcHHH
Confidence 4799999999999999988 333110 1001 136777776432 45788
Q ss_pred HHHHHHHHHHhCCcEEEEechHHH
Q 021929 115 RMRAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~~v 138 (305)
.+.++++|+++|+++..+++++.+
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc
Confidence 999999999999999999998755
No 44
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.33 E-value=4.6e-06 Score=83.51 Aligned_cols=88 Identities=31% Similarity=0.316 Sum_probs=62.9
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCC--ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCc
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 90 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~--g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~ 90 (305)
.++++....+...|.+.+++.-.+ .+.+.||||+||+++|+++. +. ....
T Consensus 229 ~~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~-------~~---------------~~~~------ 280 (467)
T TIGR01536 229 DSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIAR-------RE---------------APRG------ 280 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHH-------Hh---------------cCCC------
Confidence 356777778888888888776444 46777999999999999882 32 1110
Q ss_pred chhhhcCCeEEEEEEcCCC-CCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 91 ESREFAKRIFYTVFMGSEN-SSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 91 ~~~e~~~~~l~t~yM~t~n-Ss~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
.+.|+..+..+ ....+...|+++|+.+|++|+.+++++
T Consensus 281 --------~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 281 --------PVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred --------CceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCH
Confidence 14555555442 333567799999999999999999964
No 45
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.27 E-value=3.7e-06 Score=73.68 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=49.9
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC--CCHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQET 114 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n--Ss~et 114 (305)
.++|++|||.||++++.++ .+..+. .+ . .+.++++.... .+.++
T Consensus 1 ~v~va~SGG~DS~~ll~ll-------~~~~~~-----------~~-~---------------~v~~v~vd~g~~~~~~~~ 46 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLL-------LKLQPK-----------LK-I---------------RLIAAHVDHGLRPESDEE 46 (189)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHH-----------cC-C---------------CEEEEEeCCCCChhHHHH
Confidence 4799999999999999988 343110 12 1 26777776433 34678
Q ss_pred HHHHHHHHHHhCCcEEEEechHH
Q 021929 115 RMRAKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~~ 137 (305)
.+.++.+|+.+|++++.++++..
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~~ 69 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDVK 69 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecch
Confidence 89999999999999999998643
No 46
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=98.27 E-value=6.9e-06 Score=84.68 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=66.8
Q ss_pred cHHHHHhcHHHHHHHHHHHhCCCc--eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcc
Q 021929 14 PEEEIAFGPGCWLWDYLRRSGASG--FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 91 (305)
Q Consensus 14 peeEi~~~~a~~L~DyLrrsg~~g--~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~ 91 (305)
+.++....+-.-|.+-+++.-.+. +-+-||||+|||++|+++. +...+..+ .......|.|
T Consensus 204 ~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~-------~~~~~~~~--------~~~~~~~~~~-- 266 (554)
T PRK09431 204 DNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAK-------KYAARRIE--------DDERSEAWWP-- 266 (554)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHH-------Hhhccccc--------ccccccccCC--
Confidence 455666777777788887765443 5667999999999999993 32110000 0000000100
Q ss_pred hhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEech--HHHHHHHH
Q 021929 92 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLS 143 (305)
Q Consensus 92 ~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id--~~v~a~~~ 143 (305)
.++|+..+..++ .+...|+++|+.+|+.|+++.++ +..+.+.+
T Consensus 267 -------~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~ 311 (554)
T PRK09431 267 -------QLHSFAVGLEGS--PDLKAAREVADHLGTVHHEIHFTVQEGLDALRD 311 (554)
T ss_pred -------CceEEEEeCCCC--ChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHH
Confidence 277888887664 37899999999999999999884 34444333
No 47
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=98.21 E-value=4.6e-06 Score=86.35 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=63.1
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCC--CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCc
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 90 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~--~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~ 90 (305)
.++++....+..-|.+-+++.-. ..+.+.||||+|||++|+++. +. +..
T Consensus 236 ~~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~-------~~---------------~~~------- 286 (589)
T TIGR03104 236 RTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLA-------EA---------------GVD------- 286 (589)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHH-------Hh---------------cCC-------
Confidence 34566666666777777766543 356788999999999998872 22 222
Q ss_pred chhhhcCCeEEEEEEcCCCCC---HHHHHHHHHHHHHhCCcEEEEechH
Q 021929 91 ESREFAKRIFYTVFMGSENSS---QETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 91 ~~~e~~~~~l~t~yM~t~nSs---~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
.+.|+.++...+. ..+...|+.+|+.+|+.|+.+.+++
T Consensus 287 --------~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 287 --------GLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred --------CceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCH
Confidence 2677777765542 3678999999999999999998864
No 48
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.20 E-value=3.6e-06 Score=75.77 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=44.1
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCC------
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS------ 110 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nS------ 110 (305)
++++++|||+||++++.++ .+. |.+ +.++++-....
T Consensus 1 kv~v~~SGGkDS~~al~~a-------~~~---------------G~~----------------v~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRA-------LEE---------------GHE----------------VVALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHH-------HHc---------------CCE----------------EEEEEEEecCCCCcccc
Confidence 4789999999999999988 342 322 44444332221
Q ss_pred CHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 111 SQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 111 s~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
.....+.++.+|+.+|++|+.++++.
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~~~ 68 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEISG 68 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 12367899999999999999998753
No 49
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.20 E-value=6.6e-06 Score=69.04 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=53.9
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
.++|++|||.||++++.++ .+. .... ..+..+++-+....+++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~-------~~~---------------~~~~-------------~~~~~v~~dtg~~~~~~~~ 45 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLA-------LKA---------------LPEL-------------KPVPVIFLDTGYEFPETYE 45 (173)
T ss_pred CeEEEecCChHHHHHHHHH-------HHh---------------cccc-------------cCceEEEeCCCCCCHHHHH
Confidence 3789999999999999998 343 1110 0266777777666789999
Q ss_pred HHHHHHHHhCCcEEEEechHHHHH
Q 021929 117 RAKKLADEIGSWHLDVSIDTVVSA 140 (305)
Q Consensus 117 ~A~~LA~~iGi~h~~i~Id~~v~a 140 (305)
.++.+++.+|+++..+..+.....
T Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~~~ 69 (173)
T cd01713 46 FVDRVAERYGLPLVVVRPPDSPAE 69 (173)
T ss_pred HHHHHHHHhCCCeEEECCCccHHH
Confidence 999999999999999988765543
No 50
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.13 E-value=8.4e-06 Score=81.21 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=67.3
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
+.++|++|||+||++++.++ .+. ++.+ ++++++.... ..++.
T Consensus 6 ~kVvva~SGGlDSsvla~~L-------~e~--------------~G~e----------------Viav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWL-------REN--------------YGCE----------------VVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHH-------HHh--------------hCCe----------------EEEEEEECCC-ChHHH
Confidence 58999999999999999888 343 3333 7888887643 34689
Q ss_pred HHHHHHHHHhCCcE-EEEechHHHH-HHH-HHhhhhcCCC-----C---------ccc---ccccccCCChhhhhhhhe
Q 021929 116 MRAKKLADEIGSWH-LDVSIDTVVS-AFL-SLFQTLTGKR-----P---------RYK---LDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 116 ~~A~~LA~~iGi~h-~~i~Id~~v~-a~~-~~f~~~~g~~-----p---------rfr---tDE~dmGmtY~eLd~y~r 174 (305)
+.|+++|+++|++| +++|+.+.|. .++ ..+. +|.. | -|+ .-..++|+++...+++++
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef~~~~i~p~i~--~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgk 124 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLR--ANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGK 124 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHHHHhhcCHHHH--cCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCC
Confidence 99999999999975 7788776554 222 1111 2211 1 122 112358999999998875
No 51
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.12 E-value=8.4e-06 Score=80.94 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=49.7
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
+++|++|||+||++++.++ .+. +. .++++++-... ..++.+
T Consensus 1 kVvla~SGGlDSsvll~~l-------~e~---------------g~----------------~V~av~id~Gq-~~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWL-------REK---------------GY----------------EVIAYTADVGQ-PEEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHH-------HHc---------------CC----------------EEEEEEEecCC-ChHHHH
Confidence 4799999999999999888 332 32 27777776542 367899
Q ss_pred HHHHHHHHhCC-cEEEEechHHH
Q 021929 117 RAKKLADEIGS-WHLDVSIDTVV 138 (305)
Q Consensus 117 ~A~~LA~~iGi-~h~~i~Id~~v 138 (305)
.|+++|+++|+ +|+++|+++.|
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef 64 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEF 64 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHH
Confidence 99999999998 89999998544
No 52
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=98.10 E-value=1.9e-05 Score=81.96 Aligned_cols=102 Identities=31% Similarity=0.287 Sum_probs=63.9
Q ss_pred HHHHHhcHHHHHHHHHHHhCCC--ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcch
Q 021929 15 EEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 92 (305)
Q Consensus 15 eeEi~~~~a~~L~DyLrrsg~~--g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~ 92 (305)
.++....+-.-|.+-+++.-.+ .+-+-||||+|||++|+|+. +...++. .|....+
T Consensus 215 ~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~-------~~~~~~~----~~~~~~~----------- 272 (586)
T PTZ00077 215 GEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVA-------KLIKNGE----IDLSKRG----------- 272 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHH-------Hhhcccc----ccccccc-----------
Confidence 4444455555566666655333 56778999999999999994 3211100 0000000
Q ss_pred hhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEech--HHHHHHHHH
Q 021929 93 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSL 144 (305)
Q Consensus 93 ~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id--~~v~a~~~~ 144 (305)
...++|+..+...+ .+...|+++|+.+|+.|+++.++ +..+.+.+.
T Consensus 273 ----~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 273 ----MPKLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred ----CCCceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 01377888887654 47899999999999999888764 455554443
No 53
>PRK14561 hypothetical protein; Provisional
Probab=98.09 E-value=9.7e-06 Score=72.79 Aligned_cols=61 Identities=25% Similarity=0.261 Sum_probs=44.8
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
.++|++|||+||+++++++. . + .+. .+.++..+. ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l~--------~--------------~-~~v--------------~a~t~~~g~----~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLE--------R--------------F-YDV--------------ELVTVNFGV----LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHHH--------h--------------c-CCe--------------EEEEEecCc----hhHHH
Confidence 48899999999999988662 1 1 010 134454443 24688
Q ss_pred HHHHHHHHhCCcEEEEechHHH
Q 021929 117 RAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 117 ~A~~LA~~iGi~h~~i~Id~~v 138 (305)
.|+.+|+++|++|+.++++..+
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~~ 62 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDREI 62 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHHH
Confidence 9999999999999999998743
No 54
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.08 E-value=1.5e-05 Score=69.26 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=47.1
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCC--HHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSS--QET 114 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs--~et 114 (305)
.++|++|||+||++++.++ ++.... .+ . .+.++++.+.... .++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~-------~~~~~~-----------~~-~---------------~v~~v~id~~~~~~~~~~ 46 (185)
T cd01992 1 KILVAVSGGPDSMALLHLL-------SELKPR-----------LG-L---------------RLVAVHVDHGLRPESDEE 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHH-----------cC-C---------------cEEEEEecCCCCchHHHH
Confidence 4799999999999999988 333110 11 1 2778888765433 589
Q ss_pred HHHHHHHHHHhCCcEEEE
Q 021929 115 RMRAKKLADEIGSWHLDV 132 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i 132 (305)
.+.++++|+.+|++++.+
T Consensus 47 ~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 47 AAFVADLCAKLGIPLYIL 64 (185)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 999999999999999988
No 55
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.06 E-value=1.6e-05 Score=81.87 Aligned_cols=96 Identities=26% Similarity=0.250 Sum_probs=69.6
Q ss_pred cHHHHHhcHHHHHHHHHHHhCCCc--eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcc
Q 021929 14 PEEEIAFGPGCWLWDYLRRSGASG--FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 91 (305)
Q Consensus 14 peeEi~~~~a~~L~DyLrrsg~~g--~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~ 91 (305)
..++....+..-|.+-+++..... +.+-||||+|||++|+++. +. ....
T Consensus 207 ~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~-------~~---------------~~~~------- 257 (542)
T COG0367 207 SADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAA-------EE---------------LGKE------- 257 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHH-------Hh---------------cccc-------
Confidence 567778888888999998887444 4555999999999999993 33 1111
Q ss_pred hhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechH--HHHHHHHHh
Q 021929 92 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT--VVSAFLSLF 145 (305)
Q Consensus 92 ~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~--~v~a~~~~f 145 (305)
..+|...+.+++...+...|+++|+.||.+|+.+.+.+ +.+++...+
T Consensus 258 -------~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv 306 (542)
T COG0367 258 -------GKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVV 306 (542)
T ss_pred -------ceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHH
Confidence 12246667777766789999999999999998877754 555544433
No 56
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.05 E-value=1.3e-05 Score=79.29 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=60.8
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
+.++++||||+||+++|.++ .+. |.+ +.++++- .++.+.
T Consensus 181 gkvlvllSGGiDSpVAa~ll-------~kr---------------G~~----------------V~~v~f~---~g~~~~ 219 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLM-------MKR---------------GVE----------------VIPVHIY---MGEKTL 219 (381)
T ss_pred CcEEEEEeCChHHHHHHHHH-------HHc---------------CCe----------------EEEEEEE---eCHHHH
Confidence 35888899999999999999 333 433 6777773 346789
Q ss_pred HHHHHHHHHhCCc-------EEEEechHHHHHHHHHhhhh---------cCCCCccc---ccccccCCChhhhhhhhe
Q 021929 116 MRAKKLADEIGSW-------HLDVSIDTVVSAFLSLFQTL---------TGKRPRYK---LDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 116 ~~A~~LA~~iGi~-------h~~i~Id~~v~a~~~~f~~~---------~g~~prfr---tDE~dmGmtY~eLd~y~r 174 (305)
+.++++|+.||.+ +++++... .+.+...+... |++. .|+ .-..+.|..+..+||+..
T Consensus 220 e~v~~la~~L~~~~~~~~i~l~~v~~~~-~~~v~~~i~~~~~~~~~C~~Ckr~-m~r~a~~iA~~~g~~~IaTGhslg 295 (381)
T PRK08384 220 EKVRKIWNQLKKYHYGGKAELIVVKPQE-RERIIQKLKELKKENYTCVFCKFM-MVKHADRIAKEFGAKGIVMGDSLG 295 (381)
T ss_pred HHHHHHHHHhcccccCCcceEEEEChHH-HHHHHHHHHHhccCCCchHHHHHH-HHHHHHHHHHHcCCCEEEEcccch
Confidence 9999999999955 55555532 11222333221 1111 222 112357899999998743
No 57
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.05 E-value=2.9e-05 Score=80.57 Aligned_cols=89 Identities=24% Similarity=0.209 Sum_probs=57.8
Q ss_pred HHHhcHHHHHHHHHHHhCCC--ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhh
Q 021929 17 EIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 94 (305)
Q Consensus 17 Ei~~~~a~~L~DyLrrsg~~--g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e 94 (305)
+....+-.-|.+-+++.-.+ .+.+-||||+|||++|+++. +.+.+ ......|
T Consensus 205 ~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~-------~~~~~------------~~~~~~~------- 258 (578)
T PLN02549 205 YDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAA-------RHLAE------------TKAARQW------- 258 (578)
T ss_pred hHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHHHHHHHH-------Hhhhh------------ccccccc-------
Confidence 33444555566666665433 46777999999999999993 33110 0000000
Q ss_pred hcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 021929 95 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 95 ~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id 135 (305)
+..++|+..+..++ .+...|+.+|+.+|+.|+++.++
T Consensus 259 --~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~ev~~~ 295 (578)
T PLN02549 259 --GQQLHSFCVGLEGS--PDLKAAREVADYLGTVHHEFHFT 295 (578)
T ss_pred --CCCceEEecCCCCC--CHHHHHHHHHHHhCCCCeEEEEC
Confidence 01367777777654 47889999999999999998775
No 58
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.03 E-value=1.4e-05 Score=79.10 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=49.2
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 117 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~ 117 (305)
++|++|||+||++++.++ .+. +.. .++++++-..... +..+.
T Consensus 1 Vvva~SGGlDSsvll~~l-------~e~---------------~~~---------------eV~av~~d~Gq~~-~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWL-------KEK---------------GGY---------------EVIAVTADVGQPE-EEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHH-------HHh---------------CCC---------------eEEEEEEECCCcc-hhHHH
Confidence 589999999999999988 343 222 2777777665433 33589
Q ss_pred HHHHHHHhCCc-EEEEechHHHH
Q 021929 118 AKKLADEIGSW-HLDVSIDTVVS 139 (305)
Q Consensus 118 A~~LA~~iGi~-h~~i~Id~~v~ 139 (305)
|+++|+++|+. |+++|+++.+.
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~ 65 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFV 65 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHH
Confidence 99999999996 99999998665
No 59
>PRK08349 hypothetical protein; Validated
Probab=98.02 E-value=1.8e-05 Score=70.79 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=41.0
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
++++++|||+||+++|.++ .+ .+.+ ++++++-. +..+.+
T Consensus 2 ~~vvllSGG~DS~v~~~~l-------~~---------------~g~~----------------v~av~~d~---~~~~~~ 40 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLM-------LR---------------RGVE----------------VYPVHFRQ---DEKKEE 40 (198)
T ss_pred cEEEEccCChhHHHHHHHH-------HH---------------cCCe----------------EEEEEEeC---CHHHHH
Confidence 5789999999999999988 22 1322 77887764 345667
Q ss_pred HHHHHHHHh----CCcE---EEEechH
Q 021929 117 RAKKLADEI----GSWH---LDVSIDT 136 (305)
Q Consensus 117 ~A~~LA~~i----Gi~h---~~i~Id~ 136 (305)
.|+++|+.+ |++| ..+++.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~v~~~~ 67 (198)
T PRK08349 41 KVRELVERLQELHGGKLKDPVVVDAFE 67 (198)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcchH
Confidence 777777666 4776 4555543
No 60
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.02 E-value=2.6e-05 Score=76.62 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=53.1
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCC-CCCHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-NSSQET 114 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~-nSs~et 114 (305)
..++++||||+||+++++++ .+. |. .++++++.+. ..+.++
T Consensus 173 ~kvlvllSGGiDS~vaa~ll-------~kr---------------G~----------------~V~av~~~~~~~~~~~~ 214 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMM-------MKR---------------GC----------------RVVAVHFFNEPAASEKA 214 (371)
T ss_pred CeEEEEecCCchHHHHHHHH-------HHc---------------CC----------------eEEEEEEeCCCCccHHH
Confidence 45889999999999999988 232 32 2777777754 345678
Q ss_pred HHHHHHHHHHhC-----CcEEEEechHHHHHHHH
Q 021929 115 RMRAKKLADEIG-----SWHLDVSIDTVVSAFLS 143 (305)
Q Consensus 115 ~~~A~~LA~~iG-----i~h~~i~Id~~v~a~~~ 143 (305)
.+.|+.+|+.++ +.++.+|+.+++..+..
T Consensus 215 ~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~ 248 (371)
T TIGR00342 215 REKVERLANSLNETGGSVKLYVFDFTDVQEEIIH 248 (371)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHh
Confidence 899999999883 47899999887765543
No 61
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.01 E-value=3.5e-05 Score=77.02 Aligned_cols=91 Identities=32% Similarity=0.401 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCc--eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeE
Q 021929 23 GCWLWDYLRRSGASG--FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIF 100 (305)
Q Consensus 23 a~~L~DyLrrsg~~g--~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l 100 (305)
-.-|..-+++.-+.. |-+-||||.|||++|+|+. +.+++-. +.+ + . .+
T Consensus 211 r~~~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~-------R~lk~~~------~~~-~-~---------------~l 260 (543)
T KOG0571|consen 211 RHTLEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAA-------RELKKAQ------AAR-G-S---------------KL 260 (543)
T ss_pred HHHHHHHHHHHhhccCceeEEeeCCchHHHHHHHHH-------HHHHHhh------hhc-C-C---------------Cc
Confidence 334555566555544 5566999999999999994 4432100 000 1 1 38
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEE--echHHHHHHHHHh
Q 021929 101 YTVFMGSENSSQETRMRAKKLADEIGSWHLDV--SIDTVVSAFLSLF 145 (305)
Q Consensus 101 ~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i--~Id~~v~a~~~~f 145 (305)
+++-.|.++|+ +...|+++|+-||+.|+++ ++++-.+++-+.+
T Consensus 261 hsFaIGle~SP--DL~aarkVAd~igt~Hhe~~ft~qegidal~eVI 305 (543)
T KOG0571|consen 261 HSFAIGLEDSP--DLLAARKVADFIGTIHHEHTFTIQEGIDALDEVI 305 (543)
T ss_pred eEEEecCCCCh--hHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHh
Confidence 99999998875 7899999999999999765 4555666655543
No 62
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.92 E-value=3.7e-05 Score=67.56 Aligned_cols=68 Identities=24% Similarity=0.242 Sum_probs=43.7
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
+++||+|||.||.+.+.++. +-... .+.. -.+.+|-.+....|.++.+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~-------~~~~~-----------~~~~--------------~~~~~vdh~~~~~s~~~~~ 48 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLK-------ELRRR-----------NGIK--------------LIAVHVDHGLREESDEEAE 48 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHH-------HHHTT-----------TTTE--------------EEEEEEE-STSCCHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHH-------HHHHh-----------cCCC--------------eEEEEEecCCCcccchhHH
Confidence 47999999999999888883 22110 1111 0244555555556677889
Q ss_pred HHHHHHHHhCCcEEEEechH
Q 021929 117 RAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 117 ~A~~LA~~iGi~h~~i~Id~ 136 (305)
..+++|+++|++++..+++.
T Consensus 49 ~v~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 49 FVEEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHHHTT-EEEEEE--C
T ss_pred HHHHHHHhcCCceEEEEeee
Confidence 99999999999999999986
No 63
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.91 E-value=8.1e-05 Score=64.30 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=53.9
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
.++|++|||+||++++.++ .+. +.+ ++++++.....+..+.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~-------~~~---------------~~~----------------v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWA-------KKE---------------GYE----------------VHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHH-------HHc---------------CCc----------------EEEEEEECCCCChhHHH
Confidence 4789999999999999888 232 322 56676664333445669
Q ss_pred HHHHHHHHhCCcEEEEechHH-HHHHHHHhhhhcCCCCcccccccccCCChhhhhhhh
Q 021929 117 RAKKLADEIGSWHLDVSIDTV-VSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYG 173 (305)
Q Consensus 117 ~A~~LA~~iGi~h~~i~Id~~-v~a~~~~f~~~~g~~prfrtDE~dmGmtY~eLd~y~ 173 (305)
.++.+|+.+| ++..++.... +..+...+. .+.|+++..++|..
T Consensus 43 ~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~a-------------~~~g~~~i~~G~~~ 86 (169)
T cd01995 43 AAKLIAEKLG-PSTYVPARNLIFLSIAAAYA-------------EALGAEAIIIGVNA 86 (169)
T ss_pred HHHHHHHHHC-CCEEEeCcCHHHHHHHHHHH-------------HHCCCCEEEEeecc
Confidence 9999999999 6555554432 111111111 24677777777653
No 64
>PRK08576 hypothetical protein; Provisional
Probab=97.87 E-value=8.8e-05 Score=74.71 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=58.4
Q ss_pred cHHHHHhcHHHHHHH-------HHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCC
Q 021929 14 PEEEIAFGPGCWLWD-------YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANG 86 (305)
Q Consensus 14 peeEi~~~~a~~L~D-------yLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~ 86 (305)
+.+++...=.|+|.. ++++.+...++|++|||.||++++.++ .++ .+ .
T Consensus 206 ~~~~~~e~N~~~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La-------~k~--------------~~-~--- 260 (438)
T PRK08576 206 SLEKLIEANREVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLA-------KKA--------------FG-D--- 260 (438)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHH-------HHh--------------CC-C---
Confidence 345555444455433 344445458999999999999999887 343 11 1
Q ss_pred CCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 021929 87 EFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 132 (305)
Q Consensus 87 ~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i 132 (305)
+.++++-+....++|.+.++++|+.+|++++..
T Consensus 261 -------------V~aV~iDTG~e~pet~e~~~~lae~LGI~lii~ 293 (438)
T PRK08576 261 -------------VTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIRA 293 (438)
T ss_pred -------------CEEEEeCCCCCChHHHHHHHHHHHHcCCCEEEc
Confidence 567777776667889999999999999999873
No 65
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.85 E-value=4.2e-05 Score=66.74 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=17.6
Q ss_pred ceEEeccCchHHHHHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIV 55 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv 55 (305)
.++|++|||+||+++|.++
T Consensus 1 ~vlv~~SGG~DS~~la~ll 19 (177)
T cd01712 1 KALALLSGGIDSPVAAWLL 19 (177)
T ss_pred CEEEEecCChhHHHHHHHH
Confidence 4789999999999999998
No 66
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.74 E-value=5.9e-05 Score=68.97 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEech
Q 021929 113 ETRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 113 et~~~A~~LA~~iGi~h~~i~Id 135 (305)
...+.|+.+|+.+|++|+.++++
T Consensus 43 ~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 43 PNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCHHHHHHHHHHhCCCEEEEECC
Confidence 46789999999999999999998
No 67
>PRK13795 hypothetical protein; Provisional
Probab=97.73 E-value=0.00025 Score=74.39 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=64.5
Q ss_pred HHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhc
Q 021929 17 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFA 96 (305)
Q Consensus 17 Ei~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~ 96 (305)
++......+|+.++.+. ...++|++|||.||++++.|+ .++ ..+
T Consensus 226 ~~~~~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~-------~~a---------------~~~------------- 269 (636)
T PRK13795 226 EKEKEAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLA-------REA---------------LKD------------- 269 (636)
T ss_pred HHHHHHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHH-------HHh---------------CCC-------------
Confidence 34455567777777665 357999999999999999998 344 111
Q ss_pred CCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHH
Q 021929 97 KRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVS 139 (305)
Q Consensus 97 ~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~ 139 (305)
+..+|.-|....++|.+.++++++.+|++++.++.+..+.
T Consensus 270 ---~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~f~ 309 (636)
T PRK13795 270 ---FKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDAFW 309 (636)
T ss_pred ---cEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHhHH
Confidence 5567777766778999999999999999999998875443
No 68
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.69 E-value=0.00014 Score=67.70 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=44.6
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
...++|++|||+||++.+.++..+. +. .... -.+.+++.-...++ .+
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~----~~--------------~~~~--------------~~l~av~vd~g~~~-~~ 75 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQ----KR--------------APIN--------------FELVAVNLDQKQPG-FP 75 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHH----Hh--------------CCCC--------------eEEEEEEecCCCCC-CC
Confidence 3579999999999999988884210 11 0100 02555655432222 22
Q ss_pred HHHHHHHHHHhCCcEEEEechH
Q 021929 115 RMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
.+.++++|+++|++|++++++.
T Consensus 76 ~~~~~~~~~~lgI~~~v~~~~~ 97 (258)
T PRK10696 76 EHVLPEYLESLGVPYHIEEQDT 97 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEecc
Confidence 3457899999999999998764
No 69
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00019 Score=68.49 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=50.3
Q ss_pred hCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCH
Q 021929 33 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 112 (305)
Q Consensus 33 sg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~ 112 (305)
-|-..++++||||+|||++|+|+ .+| || + +++|+|.-+----.
T Consensus 19 vg~~kvi~alSGGVDSsv~a~L~-------~~A--------------iG-d---------------~l~cvfVD~GLlR~ 61 (315)
T COG0519 19 VGDGKVILALSGGVDSSVAAVLA-------HRA--------------IG-D---------------QLTCVFVDHGLLRK 61 (315)
T ss_pred hCCceEEEEecCCCcHHHHHHHH-------HHH--------------hh-c---------------ceEEEEecCCcccC
Confidence 45678999999999999999999 588 55 3 38888887543333
Q ss_pred HHHH-HHHHHHHHhCCcEEEEechHHH
Q 021929 113 ETRM-RAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 113 et~~-~A~~LA~~iGi~h~~i~Id~~v 138 (305)
.+.+ --+.+.+.+|++...+|-.+-|
T Consensus 62 ~E~e~V~~~f~~~~~~nl~~VdA~~~F 88 (315)
T COG0519 62 GEAEQVVEMFREHLGLNLIVVDAKDRF 88 (315)
T ss_pred CcHHHHHHHHHhhcCCceEEEchHHHH
Confidence 3333 3445667799999999876644
No 70
>PRK13794 hypothetical protein; Provisional
Probab=97.59 E-value=0.0007 Score=68.90 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=60.3
Q ss_pred HhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCC
Q 021929 19 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKR 98 (305)
Q Consensus 19 ~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~ 98 (305)
......+|+..+.+.+ ..++|++|||.||++++.|+ .++ ++ .
T Consensus 232 ~~~a~~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~-------~~~--------------~~-~--------------- 273 (479)
T PRK13794 232 ERNSIGFIRNTAEKIN-KPVTVAYSGGKDSLATLLLA-------LKA--------------LG-I--------------- 273 (479)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEecchHHHHHHHHHH-------HHH--------------hC-C---------------
Confidence 3444455666554444 57999999999999999988 455 22 1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 021929 99 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 99 ~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id 135 (305)
.+..+|+-|....++|.+.++++++.+|++++.+..+
T Consensus 274 ~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 274 NFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred CeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 2677888777777899999999999999999888766
No 71
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.43 E-value=0.00025 Score=64.38 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=48.4
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcC-CCCCHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS-ENSSQET 114 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t-~nSs~et 114 (305)
.++++-||||+||.++|.++ .+. |.+ ++++++-+ ...++..
T Consensus 4 gk~l~LlSGGiDSpVAa~lm-------~kr---------------G~~----------------V~~l~f~~~~~~~~~~ 45 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLM-------MKR---------------GCE----------------VIALHFDSPPFTGEKA 45 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHH-------HCB---------------T-E----------------EEEEEEE-TTTSSCCC
T ss_pred ceEEEEecCCccHHHHHHHH-------HHC---------------CCE----------------EEEEEEECCCCCCHHH
Confidence 35777799999999999988 232 433 78888852 3445556
Q ss_pred HHHHHHHHHHh-------CCcEEEEechHHHHHHHHHh
Q 021929 115 RMRAKKLADEI-------GSWHLDVSIDTVVSAFLSLF 145 (305)
Q Consensus 115 ~~~A~~LA~~i-------Gi~h~~i~Id~~v~a~~~~f 145 (305)
++.++++++.+ .++++.+|+.+++..+....
T Consensus 46 ~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 46 REKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp HHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 66677777665 36778889988887765443
No 72
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.00056 Score=63.89 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=50.6
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
..++||+|||.||++.+.++. +. ...- +-.+.+|.-+....+....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~-------~l---------------~~~~------------~~~a~~Vd~~~~~~~~~~~ 67 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLK-------EL---------------GRRI------------EVEAVHVDHGLRGYSDQEA 67 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHH-------Hh---------------ccCc------------eEEEEEecCCCCCccchHH
Confidence 689999999999999999993 32 1100 0024445444443447888
Q ss_pred HHHHHHHHHhCCcEEEEechHHHH
Q 021929 116 MRAKKLADEIGSWHLDVSIDTVVS 139 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~~v~ 139 (305)
+.++.+|+.+|+++.+.+++..+.
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~~~ 91 (298)
T COG0037 68 ELVEKLCEKLGIPLIVERVTDDLG 91 (298)
T ss_pred HHHHHHHHHhCCceEEEEEEeecc
Confidence 999999999999999999877554
No 73
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=97.36 E-value=0.0013 Score=55.89 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=46.9
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 117 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~ 117 (305)
++|++|||-||++++.|+ .++ +.. +..+++-+....++|.+.
T Consensus 2 i~vs~SGGKDS~v~l~l~-------~~~---------------~~~----------------~~vv~~dtg~e~p~t~~~ 43 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLA-------REA---------------GRK----------------VPVVFIDTGYEFPETYEF 43 (174)
T ss_dssp EEEE--SSHHHHHHHHHH-------HHH---------------HTT----------------CEEEEEE-STB-HHHHHH
T ss_pred eEEEecCCHHHHHHHHHH-------HHh---------------cCC----------------CcEEEEecCccCHHHHHH
Confidence 789999999999999998 455 211 244566666678899999
Q ss_pred HHHHHHHhCCcEEEEechHHHHH
Q 021929 118 AKKLADEIGSWHLDVSIDTVVSA 140 (305)
Q Consensus 118 A~~LA~~iGi~h~~i~Id~~v~a 140 (305)
++.+++.+|++...+.....+..
T Consensus 44 ~~~~~~~~~~~i~~~~~~~~~~~ 66 (174)
T PF01507_consen 44 VDELAKRYGIPIIVYRPPETFEQ 66 (174)
T ss_dssp HHHHHHHTTCEEEEEETTSHHHH
T ss_pred HHHHHhhhhhhhhhcccccchhh
Confidence 99999999999777766655443
No 74
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.36 E-value=0.0023 Score=61.58 Aligned_cols=77 Identities=17% Similarity=-0.010 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEE
Q 021929 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 104 (305)
Q Consensus 25 ~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~y 104 (305)
-|+..+.. ...++|++|||.||++++.|+ .++. .... ..+..++
T Consensus 19 iLrea~~~--f~~~vv~~SGGKDS~VLL~La-------~ka~--------------~~~~-------------~~~~vl~ 62 (301)
T PRK05253 19 ILREVAAE--FENPVMLYSIGKDSSVMLHLA-------RKAF--------------YPGK-------------LPFPLLH 62 (301)
T ss_pred HHHHHHHh--CCCEEEEecCCHHHHHHHHHH-------HHhh--------------cccC-------------CCeeEEE
Confidence 34444444 368999999999999999999 4552 1110 0145566
Q ss_pred EcCCCCCHHHHHHHHHHHHHhCCcEEEEechHH
Q 021929 105 MGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 105 M~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~ 137 (305)
.-|....+++.+.+.++|+++|++++++..++.
T Consensus 63 iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~~~ 95 (301)
T PRK05253 63 VDTGWKFPEMIEFRDRRAKELGLELIVHSNPEG 95 (301)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCEEEEeChHH
Confidence 665555689999999999999999999877643
No 75
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.36 E-value=0.0012 Score=61.15 Aligned_cols=77 Identities=17% Similarity=0.037 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeE
Q 021929 21 GPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIF 100 (305)
Q Consensus 21 ~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l 100 (305)
.+...|..-+++-+ ..++|++|||-||++++.|+. +. .. .+
T Consensus 27 ~~~e~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~~-------~~---------------~~----------------~i 67 (241)
T PRK02090 27 SAQERLAWALENFG-GRLALVSSFGAEDAVLLHLVA-------QV---------------DP----------------DI 67 (241)
T ss_pred CHHHHHHHHHHHcC-CCEEEEecCCHHHHHHHHHHH-------hc---------------CC----------------CC
Confidence 45566777777655 459999999999999999883 32 21 25
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 101 YTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 101 ~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
..+|+-|....++|.+.++++++.+|+.++++..+.
T Consensus 68 ~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 68 PVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 677787766788999999999999999999887764
No 76
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.27 E-value=0.00066 Score=68.19 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=45.9
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEc--CCCCCHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG--SENSSQE 113 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~--t~nSs~e 113 (305)
+.++|++|||+||.+.+.++... ... ..+. .+++++.- -...|.+
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~----~~~-------------~~~~----------------~l~a~hvnhglr~~s~~ 62 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQW----RTE-------------NPGV----------------TLRAIHVHHGLSPNADS 62 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHH----HHh-------------cCCC----------------eEEEEEEeCCCCcchHH
Confidence 67999999999999988877311 000 0111 25555554 3334556
Q ss_pred HHHHHHHHHHHhCCcEEEEech
Q 021929 114 TRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 114 t~~~A~~LA~~iGi~h~~i~Id 135 (305)
..+.++.+|+++|++|+.++++
T Consensus 63 ~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 63 WVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred HHHHHHHHHHHcCCcEEEEEEe
Confidence 6788999999999999988776
No 77
>PRK08557 hypothetical protein; Provisional
Probab=97.24 E-value=0.0036 Score=62.88 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=58.3
Q ss_pred HHhcHHHHHHHHHHHhCCC--ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhh
Q 021929 18 IAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 95 (305)
Q Consensus 18 i~~~~a~~L~DyLrrsg~~--g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~ 95 (305)
+.......|...+++.+.+ .+++++|||.||++++.|+ .++ ..+
T Consensus 162 ~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~-------~~~---------------~~~------------ 207 (417)
T PRK08557 162 LEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLA-------KEV---------------IPD------------ 207 (417)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHH-------HHh---------------CCC------------
Confidence 4444556677777766543 4779999999999998877 333 211
Q ss_pred cCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 021929 96 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 96 ~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id 135 (305)
+..++.-|....++|.+.++++++.+|++...+.-+
T Consensus 208 ----i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 208 ----LEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred ----CEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 445666665556899999999999999999988754
No 78
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.19 E-value=0.001 Score=53.18 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=16.6
Q ss_pred eEEeccCchHHHHHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIV 55 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv 55 (305)
++|++|||+||++++.++
T Consensus 1 v~v~~SGG~DS~~ll~~l 18 (103)
T cd01986 1 VLVAFSGGKDSSVAAALL 18 (103)
T ss_pred CEEEEeCcHHHHHHHHHH
Confidence 589999999999999888
No 79
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.16 E-value=0.0014 Score=66.69 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=45.2
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEc--CCCCCHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG--SENSSQET 114 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~--t~nSs~et 114 (305)
.+++.||||+||+++|+++ .+. |.+ ++++++- ...+....
T Consensus 179 k~lvllSGGiDS~va~~~~-------~kr---------------G~~----------------v~~l~f~~g~~~~~~~~ 220 (482)
T PRK01269 179 DVLSLISGGFDSGVASYML-------MRR---------------GSR----------------VHYCFFNLGGAAHEIGV 220 (482)
T ss_pred eEEEEEcCCchHHHHHHHH-------HHc---------------CCE----------------EEEEEEecCCchhHHHH
Confidence 4778899999999999888 222 322 5555553 22222236
Q ss_pred HHHHHHHHHHhC----CcEEEEechHHHHHHH
Q 021929 115 RMRAKKLADEIG----SWHLDVSIDTVVSAFL 142 (305)
Q Consensus 115 ~~~A~~LA~~iG----i~h~~i~Id~~v~a~~ 142 (305)
++.|+.+|+.++ ++++++++.+.+.++.
T Consensus 221 ~~~a~~l~~~~~~~~~~~l~~v~~~~~~~~i~ 252 (482)
T PRK01269 221 KQVAHYLWNRYGSSHRVRFISVDFEPVVGEIL 252 (482)
T ss_pred HHHHHHHHHHhCccCCceEEEEecHHHHHHHH
Confidence 788888888776 4577888877666443
No 80
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.15 E-value=0.0033 Score=58.09 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEechH
Q 021929 113 ETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 113 et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
...+.++..|+.+|++++.+.+..
T Consensus 45 ~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 45 PNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCC
Confidence 456889999999999998887643
No 81
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0019 Score=57.55 Aligned_cols=59 Identities=29% Similarity=0.325 Sum_probs=48.4
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 117 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~ 117 (305)
+-+-+|||-|||++|.|+ +. +|++. .+.||.+|--. +.+.
T Consensus 3 v~vLfSGGKDSSLaA~iL--------~k--------------lgyev--------------~LVTvnFGv~d----~~k~ 42 (198)
T COG2117 3 VYVLFSGGKDSSLAALIL--------DK--------------LGYEV--------------ELVTVNFGVLD----SWKY 42 (198)
T ss_pred eEEEecCCCchhHHHHHH--------HH--------------hCCCc--------------EEEEEEecccc----chhh
Confidence 456789999999999998 33 57664 58999998653 4678
Q ss_pred HHHHHHHhCCcEEEEechH
Q 021929 118 AKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 118 A~~LA~~iGi~h~~i~Id~ 136 (305)
|++-|+.+|-+|.++.++.
T Consensus 43 A~~tA~~lgF~h~vl~Ldr 61 (198)
T COG2117 43 ARETAAILGFPHEVLQLDR 61 (198)
T ss_pred HHHHHHHhCCCcceeccCH
Confidence 9999999999999999975
No 82
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.85 E-value=0.0028 Score=63.04 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=44.3
Q ss_pred EEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHH
Q 021929 39 LLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRA 118 (305)
Q Consensus 39 ~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A 118 (305)
||+.|||.|||++...+ .+. +.. .++|++.-.-+ +.++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L-------~e~---------------~~~---------------~Via~~aDlGq-~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWL-------KEE---------------GGY---------------EVIAVTADLGQ-PDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHH-------HHT---------------TTE---------------EEEEEEEESSS-T-S-HHHH
T ss_pred CeeeCCChHHHHHHHHH-------Hhh---------------cCc---------------eEEEEEEECCC-cHHHHHHH
Confidence 68999999999998887 343 312 37777776533 45789999
Q ss_pred HHHHHHhCC-cEEEEechHHHH
Q 021929 119 KKLADEIGS-WHLDVSIDTVVS 139 (305)
Q Consensus 119 ~~LA~~iGi-~h~~i~Id~~v~ 139 (305)
++-|.++|+ .|+++|..+.|-
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHH
T ss_pred HHHHHhcCCceeeecchHHHHH
Confidence 999999998 999999987554
No 83
>PRK05370 argininosuccinate synthase; Validated
Probab=96.79 E-value=0.004 Score=62.86 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHH
Q 021929 34 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 113 (305)
Q Consensus 34 g~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~e 113 (305)
+-++++|+.|||.|||+++..+ .+. +.+ |+|+..-.-+...+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL-------~e~---------------~~e----------------Via~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWM-------RQK---------------GAV----------------PYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHH-------Hhc---------------CCe----------------EEEEEEECCCCCcc
Confidence 3467999999999999988877 232 222 66665544332246
Q ss_pred HHHHHHHHHHHhCC-cEEEEechHHH-HHHHHHh
Q 021929 114 TRMRAKKLADEIGS-WHLDVSIDTVV-SAFLSLF 145 (305)
Q Consensus 114 t~~~A~~LA~~iGi-~h~~i~Id~~v-~a~~~~f 145 (305)
+.+.+++-|..+|+ .|+++|..+.| +.++..+
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI 85 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAI 85 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHH
Confidence 88999999999999 69999998744 3454433
No 84
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0095 Score=60.25 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEE
Q 021929 24 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 103 (305)
Q Consensus 24 ~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~ 103 (305)
.|+..++ |..++++.+|||+||+++++|+ .+| ++.+. ++++
T Consensus 222 ~~i~k~v---G~~~Vl~~vSGgvdStV~a~Ll-------~~a--------------lg~~R---------------~~ai 262 (552)
T KOG1622|consen 222 NEIRKWV---GDYKVLVAVSGGVDSTVCAALL-------RRA--------------LGPDR---------------VHAI 262 (552)
T ss_pred HHHHHHh---cccceEEEecCCchHHHHHHHH-------HHh--------------hCCCc---------------eEEE
Confidence 4555555 4579999999999999999999 577 56553 6776
Q ss_pred EEcCCCCCHHHHHHHHH-HHHHhCCcEEEEechHHHHH
Q 021929 104 FMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVVSA 140 (305)
Q Consensus 104 yM~t~nSs~et~~~A~~-LA~~iGi~h~~i~Id~~v~a 140 (305)
..-.-.--..+.+.-++ |.. ||++...+|-..-|-.
T Consensus 263 ~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~~f~s 299 (552)
T KOG1622|consen 263 HVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASETFLS 299 (552)
T ss_pred EecccchhhhHHHHHHHHHHH-cCCceEEeechHHHHH
Confidence 55422112222333333 444 9999999998776654
No 85
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.006 Score=60.58 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=52.7
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
.++++|+.|||.|+|++.-.+ ++. .+.+ ++|+..-.-+. .++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL-------~e~--------------~~~e----------------Via~tadvGQ~-eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWL-------KEK--------------GGAE----------------VIAVTADVGQP-EED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHH-------HHh--------------cCce----------------EEEEEEeCCCC-hHH
Confidence 468999999999999988887 454 2233 77776654333 689
Q ss_pred HHHHHHHHHHhCCc-EEEEechHHHH
Q 021929 115 RMRAKKLADEIGSW-HLDVSIDTVVS 139 (305)
Q Consensus 115 ~~~A~~LA~~iGi~-h~~i~Id~~v~ 139 (305)
.+.+++=|.++|+. |+++|..+.|-
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF~ 71 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEFV 71 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHHH
Confidence 99999999999987 99999987554
No 86
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=96.44 E-value=0.0026 Score=58.91 Aligned_cols=57 Identities=25% Similarity=0.231 Sum_probs=40.1
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHH
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 116 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~ 116 (305)
.+.|++|||+|||++|.|+ ..+ +.+. + -.|..| +.+-+.
T Consensus 62 kiaVA~SGG~DSsas~iil-------R~~---------------g~~v------~--------p~t~~L-----p~~ir~ 100 (255)
T COG1365 62 KIAVAYSGGVDSSASAIIL-------RWA---------------GFTV------D--------PGTAIL-----PDHIRR 100 (255)
T ss_pred eEEEEecCCcchHHHHHHH-------Hhh---------------ceee------c--------cccccC-----CHHHhH
Confidence 5899999999999999999 333 3110 0 123344 347788
Q ss_pred HHHHHHHHhCCcEEEEec
Q 021929 117 RAKKLADEIGSWHLDVSI 134 (305)
Q Consensus 117 ~A~~LA~~iGi~h~~i~I 134 (305)
.++.++..+|..+.-+.+
T Consensus 101 n~~~l~~~lg~~p~yvee 118 (255)
T COG1365 101 NKEELETLLGEVPEYVEE 118 (255)
T ss_pred HHHHHHHHHccCHHHHHH
Confidence 899999999988754433
No 87
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.22 E-value=0.018 Score=57.33 Aligned_cols=70 Identities=30% Similarity=0.369 Sum_probs=50.7
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEc-CCCCCHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG-SENSSQETRM 116 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~-t~nSs~et~~ 116 (305)
+++-||||+||-+++.++ .+- |- .++.||+. ..+.+++.++
T Consensus 178 ~l~LlSGGIDSPVA~~l~-------mkR---------------G~----------------~v~~v~f~~~p~~~~~a~~ 219 (383)
T COG0301 178 VLLLLSGGIDSPVAAWLM-------MKR---------------GV----------------EVIPVHFGNPPYTSEKARE 219 (383)
T ss_pred EEEEEeCCCChHHHHHHH-------Hhc---------------CC----------------EEEEEEEcCCCCchHHHHH
Confidence 555589999999999998 232 32 37888884 4467788889
Q ss_pred HHHHHH-HHhCCc-----EEEEechHHHHHHHHHh
Q 021929 117 RAKKLA-DEIGSW-----HLDVSIDTVVSAFLSLF 145 (305)
Q Consensus 117 ~A~~LA-~~iGi~-----h~~i~Id~~v~a~~~~f 145 (305)
.+..|+ ..++.+ .+.+|+.+++..+....
T Consensus 220 k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~ 254 (383)
T COG0301 220 KVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKV 254 (383)
T ss_pred HHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhc
Confidence 888888 666544 47778888877765443
No 88
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=96.18 E-value=0.045 Score=49.24 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=48.2
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
..++|..|||.||+|++-|+ .+. ... +..+|+-|...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~-------~~~---------------~~~----------------~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLV-------SKI---------------SPD----------------IPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHH-------Hhc---------------CCC----------------CcEEEecCCCCCHHHH
Confidence 47999999999999999888 232 211 4556888888889999
Q ss_pred HHHHHHHHHhCCcEEEEec
Q 021929 116 MRAKKLADEIGSWHLDVSI 134 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~I 134 (305)
+..+++++.+|.....+.-
T Consensus 56 efv~~~~~~~~l~i~~~~~ 74 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKP 74 (212)
T ss_pred HHHHHHHHHhCCceEEECC
Confidence 9999999999977665544
No 89
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=95.97 E-value=0.087 Score=50.74 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=51.0
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
...+++.|||-||++++.|+ .++... +.- .+..++.-|...-++|.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa-------~kaf~~------------~~~---------------p~~vl~IDTG~~F~Et~ 65 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLA-------RKAFYP------------GPL---------------PFPLLHVDTGWKFREMI 65 (294)
T ss_pred CCcEEEEecChHHHHHHHHH-------HHHhcc------------cCC---------------CeEEEEEecCCCCHHHH
Confidence 35678899999999999998 455210 101 25666666665567899
Q ss_pred HHHHHHHHHhCCcEEEEechHH
Q 021929 116 MRAKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~~ 137 (305)
+...++|+.+|+++++....+.
T Consensus 66 efrd~~a~~~gl~l~v~~~~~~ 87 (294)
T TIGR02039 66 AFRDHMVAKYGLRLIVHSNEEG 87 (294)
T ss_pred HHHHHHHHHhCCCEEEEechhh
Confidence 9999999999999999877653
No 90
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.71 E-value=0.14 Score=49.79 Aligned_cols=79 Identities=16% Similarity=0.058 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEE
Q 021929 24 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 103 (305)
Q Consensus 24 ~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~ 103 (305)
.-|+..+.. ....+++.|||.||+|++.|+ .+++.. +.. .+-.+
T Consensus 28 ~ilrea~~~--f~~~~v~~SgGKDS~VlLhLa-------~kaf~~------------~~~---------------~~pvl 71 (312)
T PRK12563 28 HILREVVAE--CSKPVMLYSIGKDSVVMLHLA-------MKAFRP------------TRP---------------PFPLL 71 (312)
T ss_pred HHHHHHHHh--cCCcEEEecCChHHHHHHHHH-------HHhhcc------------cCC---------------CeeEE
Confidence 334444433 356789999999999999999 455210 011 15667
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 021929 104 FMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 104 yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v 138 (305)
+.-|...-++|.+...++|+++|+++++..-.+.+
T Consensus 72 ~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~~~~ 106 (312)
T PRK12563 72 HVDTTWKFREMIDFRDRRAKELGLDLVVHHNPDGI 106 (312)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCcEEEecChHHH
Confidence 77777777899999999999999998876544433
No 91
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.46 E-value=0.081 Score=40.35 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=16.6
Q ss_pred eEEeccCchHHHHHHHHH
Q 021929 38 FLLPLSGGADSSSVAAIV 55 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv 55 (305)
++|++|||.||++++.++
T Consensus 1 ilv~~sgg~dS~~~l~~~ 18 (86)
T cd01984 1 ILVALSGGLDSSVLLHLA 18 (86)
T ss_pred CEEEeeCCHHHHHHHHHH
Confidence 589999999999999888
No 92
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=95.35 E-value=0.17 Score=46.69 Aligned_cols=57 Identities=9% Similarity=0.062 Sum_probs=44.4
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
...+++..|||.||+|++-|+ .++ ... .+-.+|.-|...-++|
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~-------~~~---------------~~~---------------~i~vv~vDTg~~fpET 67 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLL-------SSI---------------SEP---------------MIPVIFIDTLYHFPQT 67 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHH-------HHh---------------hCC---------------CCCEEEEeCCCCCHHH
Confidence 456999999999999999988 344 101 1445777777778999
Q ss_pred HHHHHHHHHHhCCc
Q 021929 115 RMRAKKLADEIGSW 128 (305)
Q Consensus 115 ~~~A~~LA~~iGi~ 128 (305)
.+.+.++++.+|+.
T Consensus 68 ~e~~d~~~~~~~~~ 81 (226)
T TIGR02057 68 LTLKDELTKKYYQT 81 (226)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999999943
No 93
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=94.45 E-value=0.078 Score=51.72 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=45.1
Q ss_pred hCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCH
Q 021929 33 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 112 (305)
Q Consensus 33 sg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~ 112 (305)
++.+.++|+.|||.|+|++++.+ ++. |++ ..|||..... .
T Consensus 3 ~~~~~vVLAySGgLDTscil~WL-------keq---------------Gye-----------------Viay~AnvGQ-~ 42 (412)
T KOG1706|consen 3 SSKKSVVLAYSGGLDTSCILAWL-------KEQ---------------GYE-----------------VIAYLANVGQ-K 42 (412)
T ss_pred CCCceEEEEecCCcCchhhhHHH-------Hhc---------------Cce-----------------EEEeeccccc-h
Confidence 34467899999999999988877 454 555 4588885433 7
Q ss_pred HHHHHHHHHHHHhCCcEE
Q 021929 113 ETRMRAKKLADEIGSWHL 130 (305)
Q Consensus 113 et~~~A~~LA~~iGi~h~ 130 (305)
++.+.|++=|-.+|+.-.
T Consensus 43 edfe~ar~kAlk~Gakk~ 60 (412)
T KOG1706|consen 43 EDFEEARKKALKSGAKKV 60 (412)
T ss_pred hhHHHHHHhhhhcCceEE
Confidence 899999999999998753
No 94
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.26 E-value=0.33 Score=45.65 Aligned_cols=68 Identities=24% Similarity=0.214 Sum_probs=51.0
Q ss_pred CCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHH
Q 021929 34 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 113 (305)
Q Consensus 34 g~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~e 113 (305)
-...++++.|||.||+|++.|+ .++ ... +..++.-|..--++
T Consensus 38 ~~~~~~~~~S~Gkds~V~l~L~-------~k~---------------~~~----------------~~vif~DTg~~f~E 79 (261)
T COG0175 38 FSNPVVVSFSGGKDSTVLLHLA-------AKA---------------FPD----------------FPVIFLDTGYHFPE 79 (261)
T ss_pred cCCCeEEEecCchhHHHHHHHH-------HHh---------------cCC----------------CcEEEEeCCCcCHH
Confidence 3345799999999999999998 455 111 44566666666789
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHH
Q 021929 114 TRMRAKKLADEIGSWHLDVSIDTVVS 139 (305)
Q Consensus 114 t~~~A~~LA~~iGi~h~~i~Id~~v~ 139 (305)
|.+-+.++++.+|+...+..-+..+.
T Consensus 80 t~~~~d~~~~~~~~~l~~~~~~~~~~ 105 (261)
T COG0175 80 TYEFRDRLAEEYGLDLKVYRPDDEVA 105 (261)
T ss_pred HHHHHHHHHHHcCCeEEEecCccchh
Confidence 99999999999997777666655443
No 95
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=93.14 E-value=0.32 Score=49.46 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=43.7
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
..++||+|||-||++++.|+ .+|+.. +..+ .-.+.++-++.-|---.+++.
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv-------~~Al~~-----------lp~e-----------~~~k~v~VI~~DTgvE~Pe~~ 64 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLI-------WNALAA-----------LPAE-----------QRTKKIHVISTDTLVENPIVA 64 (447)
T ss_pred CceEEEeCCCHHHHHHHHHH-------HHHHHh-----------cccc-----------ccCcceEEEECcCCCccHHHH
Confidence 56899999999999999999 466321 1111 011246666666544445444
Q ss_pred HH-------HHHHHHHhCCcEEEEechH
Q 021929 116 MR-------AKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 116 ~~-------A~~LA~~iGi~h~~i~Id~ 136 (305)
+. .+..|++.|.+....-+.+
T Consensus 65 ~~v~~~l~~i~~~a~~~~lpi~~~~v~P 92 (447)
T TIGR03183 65 AWVNASLERMQEAAQDQGLPIEPHRLTP 92 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEecCC
Confidence 44 4556777787765443433
No 96
>PRK06850 hypothetical protein; Provisional
Probab=92.79 E-value=0.42 Score=49.36 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcC
Q 021929 18 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAK 97 (305)
Q Consensus 18 i~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~ 97 (305)
....+..-+.+-... ....++||+|||-||++++.|+ .+|+.. +..+. -.
T Consensus 18 ~~~~~i~~i~~~Y~~-~~~P~vV~fSGGKDStavL~Lv-------~~Al~~-----------lp~e~-----------r~ 67 (507)
T PRK06850 18 PIEELIEEIQELYCA-DNRPWVIGYSGGKDSTAVLQLV-------WNALAG-----------LPPEK-----------RT 67 (507)
T ss_pred HHHHHHHHHHHHHhc-CCCCeEEeCCCCchHHHHHHHH-------HHHHHh-----------cchhc-----------cC
Confidence 334444444442221 2356899999999999999999 455321 11110 01
Q ss_pred CeEEEEEEcCCCCCHHHHHHH-------HHHHHHhCCcEEEEechH
Q 021929 98 RIFYTVFMGSENSSQETRMRA-------KKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 98 ~~l~t~yM~t~nSs~et~~~A-------~~LA~~iGi~h~~i~Id~ 136 (305)
+.++-++.-|---.+++.... +..|++.|++....-+.+
T Consensus 68 k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~glpi~~~~v~P 113 (507)
T PRK06850 68 KPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGLPITPHKLTP 113 (507)
T ss_pred CcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCCceEEEeeCC
Confidence 236666665544445555443 445677788775544443
No 97
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=92.01 E-value=0.82 Score=42.58 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=41.8
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCC-C----H
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS-S----Q 112 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nS-s----~ 112 (305)
++.-+|||-||+.++.++ .+. |.+ ...-+.|..++. | .
T Consensus 3 ~~aL~SGGKDS~~Al~~a-------~~~---------------G~e---------------V~~Ll~~~p~~~dS~m~H~ 45 (223)
T COG2102 3 VIALYSGGKDSFYALYLA-------LEE---------------GHE---------------VVYLLTVKPENGDSYMFHT 45 (223)
T ss_pred EEEEEecCcHHHHHHHHH-------HHc---------------CCe---------------eEEEEEEecCCCCeeeeec
Confidence 556689999998888777 232 333 122333333332 1 2
Q ss_pred HHHHHHHHHHHHhCCcEEEEechH
Q 021929 113 ETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 113 et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
...+-+..+|+.+|+++.....+-
T Consensus 46 ~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 46 PNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cchHHHHHHHHhcCCceEEEecCc
Confidence 456789999999999999999887
No 98
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=91.85 E-value=0.6 Score=43.33 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCcEEEEech
Q 021929 114 TRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 114 t~~~A~~LA~~iGi~h~~i~Id 135 (305)
..+-.+..|+.+|++++.+..+
T Consensus 46 ~~~~~~~qA~algipl~~~~~~ 67 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTE 67 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecC
Confidence 4577888999999999876554
No 99
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=89.03 E-value=0.72 Score=42.58 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=34.7
Q ss_pred ceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCC-CH--H
Q 021929 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS-SQ--E 113 (305)
Q Consensus 37 g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nS-s~--e 113 (305)
++++..|||-||+.++..+ .+..+ +. .+.|.+=....| .- -
T Consensus 2 k~v~l~SGGKDS~lAl~~a-------~~~~~------------v~-----------------~L~t~~~~~~~s~~~H~~ 45 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRA-------LRQHE------------VV-----------------CLLTMVPEEEDSYMFHGV 45 (218)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHT-E------------EE-----------------EEEEEEESTTT-SSS-ST
T ss_pred cEEEEEcCcHHHHHHHHHH-------HHhCC------------cc-----------------EEEEeccCCCCccccccc
Confidence 4677899999999987665 22210 11 134433222232 11 2
Q ss_pred HHHHHHHHHHHhCCcEEEEech
Q 021929 114 TRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 114 t~~~A~~LA~~iGi~h~~i~Id 135 (305)
..+..+..|+.+|+++..+.++
T Consensus 46 ~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 46 NIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp TGTCHHHHHHHHT--EEEEEE-
T ss_pred CHHHHHHHHHHCCCCEEEEEcc
Confidence 2556788899999999998887
No 100
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=84.58 E-value=0.65 Score=47.37 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.1
Q ss_pred CceEEeccCchHHHHHHHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVG 56 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~ 56 (305)
+.+.|-+||||||+++|.+++
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h 271 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAH 271 (520)
T ss_pred CcEEEEecCCchHHHHHHHHH
Confidence 678899999999999999994
No 101
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=81.31 E-value=18 Score=36.93 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCc--h---hHHHHHHHhhccCCCCCCcchhhhcCCeE
Q 021929 26 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGD--E---QVKADAIRIGRYANGEFPTESREFAKRIF 100 (305)
Q Consensus 26 L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~--~---~v~~~~~~ig~~~~~~~p~~~~e~~~~~l 100 (305)
+.+.++++|...+.+|+=.|-|..+- .+++|. + +.++.+++.|-. ..
T Consensus 289 ll~~l~~aG~~~v~iGiES~~~~~L~-------------~~~K~~t~~~~~~ai~~l~~~Gi~---------------~~ 340 (497)
T TIGR02026 289 ILHLYRRAGLVHISLGTEAAAQATLD-------------HFRKGTTTSTNKEAIRLLRQHNIL---------------SE 340 (497)
T ss_pred HHHHHHHhCCcEEEEccccCCHHHHH-------------HhcCCCCHHHHHHHHHHHHHCCCc---------------EE
Confidence 44667888888888877666555332 121111 1 222233332211 23
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEec
Q 021929 101 YTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 134 (305)
Q Consensus 101 ~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~I 134 (305)
..+.+|..+.+.++..+-.+.+.+++..|..+.+
T Consensus 341 ~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~ 374 (497)
T TIGR02026 341 AQFITGFENETDETFEETYRQLLDWDPDQANWLM 374 (497)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 4566677777788888888888888888766643
No 102
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=77.94 E-value=5 Score=39.96 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCceEEeccCchHHHHHHHHHH
Q 021929 23 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG 56 (305)
Q Consensus 23 a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~ 56 (305)
-.|+..+ ...+.|++|||-||++++-|+.
T Consensus 20 l~~if~~-----f~~VcVSFSGGKDS~lmLhL~~ 48 (407)
T COG3969 20 LEWIFNT-----FPRVCVSFSGGKDSGLMLHLVA 48 (407)
T ss_pred HHHHHhc-----CCeEEEEecCCCchhHHHHHHH
Confidence 3555544 4789999999999999999884
No 103
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=75.05 E-value=9.3 Score=34.08 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEec
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 134 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~I 134 (305)
+..+|+-|...-++|.+.+.++++++|+....+.-
T Consensus 19 ~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 19 VKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 55688888778899999999999999998777753
No 104
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=66.67 E-value=7.5 Score=36.31 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=32.6
Q ss_pred ccccCCcHHHHHhcHHHHHHHHHHHhCCC--ceEEeccCc
Q 021929 8 KITYHSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 45 (305)
Q Consensus 8 ~~~~~~peeEi~~~~a~~L~DyLrrsg~~--g~~LgLSGG 45 (305)
.++...++++++...+.++.+++...... .+.|+||||
T Consensus 2 ~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgG 41 (238)
T COG0363 2 KLIIFEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGG 41 (238)
T ss_pred ceEEcCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCC
Confidence 35667788999999999999999887644 699999999
No 105
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=65.23 E-value=43 Score=34.46 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 021929 101 YTVFMGSENSSQETRMRAKKLADEIGSWHLDV 132 (305)
Q Consensus 101 ~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i 132 (305)
--+++-|-.--+||.+.+.++++++|+...++
T Consensus 142 pV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 142 RVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 34566666677899999999999999887765
No 106
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=64.63 E-value=8.1 Score=35.64 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=34.4
Q ss_pred ccccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHH
Q 021929 8 KITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVA 52 (305)
Q Consensus 8 ~~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA 52 (305)
+++.+.+.+|++...+..+.+++.+.+ .+.|+||||-.-..+-
T Consensus 2 ~i~i~~~~~e~~~~~a~~i~~~i~~~~--~~~l~lsgG~tp~~~y 44 (239)
T PRK12358 2 KIIITKDYEEMSRVAAHHLLGYMSKTK--RVNLAITAGSTPKGMY 44 (239)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHhCC--CeEEEECCCCCHHHHH
Confidence 355667889999999999999998854 7999999996554433
No 107
>PLN02309 5'-adenylylsulfate reductase
Probab=62.82 E-value=54 Score=33.67 Aligned_cols=31 Identities=10% Similarity=-0.030 Sum_probs=25.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 021929 102 TVFMGSENSSQETRMRAKKLADEIGSWHLDV 132 (305)
Q Consensus 102 t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i 132 (305)
-+++-|-.--+||.+.+.+|++++|++.+++
T Consensus 138 V~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 138 VFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 4566666677899999999999999987766
No 108
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=57.51 E-value=12 Score=34.30 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=31.4
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCC---CceEEeccCchH
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGA---SGFLLPLSGGAD 47 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~---~g~~LgLSGGiD 47 (305)
++.+.+.++++...|.+|-+.+++... .+.+||||||--
T Consensus 3 ~~~~~~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T 44 (261)
T PRK00443 3 LIILKTAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSS 44 (261)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCC
Confidence 456678899999999999999986543 457899999955
No 109
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=56.12 E-value=77 Score=31.47 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=44.1
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
..+.+|-|||-||++.|..+ +++.. |-.++.+. .+..++=+...--....
T Consensus 52 e~v~igasGgkdstvlA~v~--------~~Ln~----------r~~~g~~l------------~Lls~degi~gyrd~sl 101 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVL--------DALNE----------RHDYGLRL------------FLLSIDEGIRGYRDDSL 101 (347)
T ss_pred CccccccccchhHHHHHHHH--------HHhhh----------hcCCCcee------------eeeeccccccceeccHH
Confidence 34788899999999998877 44221 00111000 13344444322122233
Q ss_pred HHHHHHHHHhCCcEEEEechHHHH
Q 021929 116 MRAKKLADEIGSWHLDVSIDTVVS 139 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~~v~ 139 (305)
..-+....+.|++..++...+++.
T Consensus 102 ~avkrn~~~~~lPL~ivs~~dl~~ 125 (347)
T KOG2840|consen 102 EAVKRNGVQYGLPLCIVSYKDLYG 125 (347)
T ss_pred HHHHHhhhhcCCceEEecHHHHhc
Confidence 444556778999999999988877
No 110
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=55.97 E-value=14 Score=33.94 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=30.4
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCch
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGA 46 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGi 46 (305)
++.+.+.+++....+..|.+.+++.+ .+.|+||||-
T Consensus 3 i~i~~~~~~~~~~~a~~i~~~i~~~~--~~~l~lsgGs 38 (232)
T PRK09762 3 LQQVENYTALSERASEYLLAVIRSKP--DAVICLATGA 38 (232)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCC--CeEEEECCCC
Confidence 45567789999999999999998854 7899999993
No 111
>PRK10490 sensor protein KdpD; Provisional
Probab=51.62 E-value=1.9e+02 Score=32.06 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.3
Q ss_pred EEEEEEcCCCC---CHHH---HHHHHHHHHHhCCcEEEEechHHHHHHHHHhhh
Q 021929 100 FYTVFMGSENS---SQET---RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 147 (305)
Q Consensus 100 l~t~yM~t~nS---s~et---~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~ 147 (305)
++.+|.-+.+. +.+. ..+..+||+++|.....+.=+++.+++.+.-..
T Consensus 281 ~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~i~~~A~~ 334 (895)
T PRK10490 281 WHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVLRYARE 334 (895)
T ss_pred EEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHH
Confidence 78888876532 2222 335567999999998888888888887766543
No 112
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=49.90 E-value=22 Score=33.03 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=32.4
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHH-h--CCCceEEeccCchHH
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRR-S--GASGFLLPLSGGADS 48 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrr-s--g~~g~~LgLSGGiDS 48 (305)
++.+.+.+|++...+..+.+.+++ . .-..+.|+||||-.=
T Consensus 3 i~~~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP 45 (253)
T PTZ00285 3 IVISEDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTP 45 (253)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCH
Confidence 456678899999999999999987 4 334689999999654
No 113
>PLN02360 probable 6-phosphogluconolactonase
Probab=49.86 E-value=23 Score=33.35 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=30.8
Q ss_pred ccccCCcHHHHHhcHHHHHHHHHHHh--CCCceEEeccCc
Q 021929 8 KITYHSPEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 45 (305)
Q Consensus 8 ~~~~~~peeEi~~~~a~~L~DyLrrs--g~~g~~LgLSGG 45 (305)
+++.+...++++...+..+.+.++.. ....+.|+||||
T Consensus 12 ~l~i~~~~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGG 51 (268)
T PLN02360 12 EIRVHENLDELSTDLAEYIAELSEASVKERGVFAIALSGG 51 (268)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 35667789999999999999988764 334688999999
No 114
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=49.77 E-value=20 Score=34.04 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=30.8
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCCCc--eEEeccCc
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGASG--FLLPLSGG 45 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~~g--~~LgLSGG 45 (305)
+..+...+|+...++.++.+-..++-.++ |-|+||||
T Consensus 11 ~~v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGG 49 (252)
T KOG3147|consen 11 VIVFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGG 49 (252)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 45678889999999999988877766555 88999999
No 115
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=48.81 E-value=26 Score=32.25 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCch
Q 021929 12 HSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGA 46 (305)
Q Consensus 12 ~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGGi 46 (305)
+...+|++...+..+-+.+++.- .+.+.|+||||-
T Consensus 2 ~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGGs 38 (233)
T TIGR01198 2 FSNSAELAEALAERIATKLQTALAERGQFSLALSGGR 38 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCc
Confidence 34678888888888888887632 346899999993
No 116
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=48.79 E-value=22 Score=33.07 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=34.1
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHH-hC--CCceEEeccCchHHHHH
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRR-SG--ASGFLLPLSGGADSSSV 51 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrr-sg--~~g~~LgLSGGiDSs~t 51 (305)
++.+.+.+|+....+..+-+.+++ .. ...|.|+||||---..+
T Consensus 3 i~~~~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP~~~ 48 (259)
T TIGR00502 3 LIILQTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIGT 48 (259)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCChHHH
Confidence 456678899999999999999999 43 34689999999654443
No 117
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=44.14 E-value=22 Score=32.44 Aligned_cols=55 Identities=25% Similarity=0.442 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccccCCCCCcccccccccCCC
Q 021929 187 FKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNAR 250 (305)
Q Consensus 187 f~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~ 250 (305)
++-|..-|. +-+|+|++..+.++.+.|...-++++.+ +-.||.. .|.-||.||.-
T Consensus 35 vdsl~Yfw~-~rtP~~~a~Dl~~~i~~y~~~w~~~~vv-----LiGYSFG---ADvlP~~~nrL 89 (192)
T PF06057_consen 35 VDSLRYFWS-ERTPEQTAADLARIIRHYRARWGRKRVV-----LIGYSFG---ADVLPFIYNRL 89 (192)
T ss_pred echHHHHhh-hCCHHHHHHHHHHHHHHHHHHhCCceEE-----EEeecCC---chhHHHHHhhC
Confidence 445566676 4799999999999999998776666543 4556664 57899999853
No 118
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=41.27 E-value=2.3e+02 Score=25.01 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=43.0
Q ss_pred CCcHHHHHhcHHHHHHHHHHHhCC------CceEEe---ccCchHHHHHHHHH--HHhHHHHHHHHhcCchhHHHHHHHh
Q 021929 12 HSPEEEIAFGPGCWLWDYLRRSGA------SGFLLP---LSGGADSSSVAAIV--GCMCQLVVKEIANGDEQVKADAIRI 80 (305)
Q Consensus 12 ~~peeEi~~~~a~~L~DyLrrsg~------~g~~Lg---LSGGiDSs~tA~lv--~~mc~~v~~a~~~g~~~v~~~~~~i 80 (305)
..+.+++...+ ++|.+.|. +++... ||||.|....|..- ..|-.++.+++.+ +
T Consensus 52 ~is~~ev~~sL-----~~L~~~gli~k~~~g~y~~t~~~l~~~~~~~~~avr~~h~q~~~lA~~al~~-----------~ 115 (171)
T PF14394_consen 52 KISAEEVRDSL-----EFLEKLGLIKKDGDGKYVQTDKSLTTSSEIPSEAVRSYHKQMLELAQEALDR-----------V 115 (171)
T ss_pred CCCHHHHHHHH-----HHHHHCCCeEECCCCcEEEecceeeCCCCCcHHHHHHHHHHHHHHHHHHHHh-----------C
Confidence 55666666666 56666553 345443 77776665555433 2444455555331 2
Q ss_pred hccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHH
Q 021929 81 GRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKL 121 (305)
Q Consensus 81 g~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~L 121 (305)
..+ .|.+.|++|+. ++++.+.+++.
T Consensus 116 p~~-------------~R~~s~~T~~v---s~~~~~ki~~~ 140 (171)
T PF14394_consen 116 PPE-------------ERDFSGLTMSV---SREDYEKIKKE 140 (171)
T ss_pred Ccc-------------ccceeeeEEEe---CHHHHHHHHHH
Confidence 222 25688999985 55555555544
No 119
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.59 E-value=79 Score=29.91 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=19.4
Q ss_pred EEcCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 021929 104 FMGSENSSQETRMRAKKLADEIGSWHLDV 132 (305)
Q Consensus 104 yM~t~nSs~et~~~A~~LA~~iGi~h~~i 132 (305)
.+|...+...|-.-.-.||+.||+++...
T Consensus 117 l~G~~s~D~~tgqvg~~lAe~Lg~P~vt~ 145 (256)
T PRK03359 117 LCGDGSSDLYAQQVGLLVGEILNIPAING 145 (256)
T ss_pred EEcCccccCCCCcHHHHHHHHhCCCceee
Confidence 33433334456677888999999998543
No 120
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=40.12 E-value=2.3e+02 Score=28.62 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCch--hH---HHHHHHhhccCCCCCCcchhhhcCCe
Q 021929 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDE--QV---KADAIRIGRYANGEFPTESREFAKRI 99 (305)
Q Consensus 25 ~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~--~v---~~~~~~ig~~~~~~~p~~~~e~~~~~ 99 (305)
.+.+.|+++|...+.+|+=.|-|..+- .+++|.. ++ ++.+++.|-. .
T Consensus 288 e~l~~l~~aG~~~v~iGiES~s~~~L~-------------~~~K~~~~~~~~~~i~~~~~~Gi~---------------v 339 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGYESGDQQILK-------------NIKKGLTVEIARRFTRDCHKLGIK---------------V 339 (472)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHH-------------HhcCCCCHHHHHHHHHHHHHCCCe---------------E
Confidence 456778888888888888666665442 2222221 22 2222222211 2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEec
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 134 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~I 134 (305)
...+.+|....+.++..+-.+.+.+++..+..+.+
T Consensus 340 ~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~ 374 (472)
T TIGR03471 340 HGTFILGLPGETRETIRKTIDFAKELNPHTIQVSL 374 (472)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeee
Confidence 23455566677778888888888889877665544
No 121
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=37.62 E-value=2.2e+02 Score=31.84 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=53.2
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCC---C-
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS---S- 111 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nS---s- 111 (305)
..++|++||+..|.-+ +..-++++-+ +.. .++.+|.-+.++ +
T Consensus 249 e~ilvcI~~~~~~e~l---iR~a~RlA~~---------------~~a----------------~~~av~v~~~~~~~~~~ 294 (890)
T COG2205 249 ERILVCISGSPGSEKL---IRRAARLASR---------------LHA----------------KWTAVYVETPELHRLSE 294 (890)
T ss_pred ceEEEEECCCCchHHH---HHHHHHHHHH---------------hCC----------------CeEEEEEeccccccccH
Confidence 5689999999988654 3222222111 121 278888887653 2
Q ss_pred --HHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhh
Q 021929 112 --QETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 146 (305)
Q Consensus 112 --~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~ 146 (305)
......+.+||+++|....++.=+++.+++...-.
T Consensus 295 ~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ya~ 331 (890)
T COG2205 295 KEARRLHENLRLAEELGAEIVTLYGGDVAKAIARYAR 331 (890)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHH
Confidence 23455788999999999999998888888776654
No 122
>COG4703 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.84 E-value=16 Score=28.27 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=32.8
Q ss_pred HHHHhhhcccccCCCcccccccCCCCCcccccccccCCCCccchhhHHHHHHHh
Q 021929 212 KYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 265 (305)
Q Consensus 212 ~~~~~NrHKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~w~~~f~~id~~~~~~ 265 (305)
+.|.+|--+.- --+||+|++-|-||.|=-+. .++|..||-..-++
T Consensus 25 rnFEr~G~vv~-------eV~ys~~~e~F~lr~~~~~e--~y~FD~IDlvaiEI 69 (74)
T COG4703 25 RNFERNGEVVC-------EVKYSEDNETFELRDVEDRE--KYPFDDIDLVAIEI 69 (74)
T ss_pred hhhhcCCEEEE-------EEEecCCCceEEEEEcccCc--cCccccccchhHHH
Confidence 44555555543 34789999999999987666 59999999766543
No 123
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=36.48 E-value=33 Score=30.65 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCchH
Q 021929 16 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 47 (305)
Q Consensus 16 eEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiD 47 (305)
++++...+..|.++|++. .++.|+||||--
T Consensus 1 ~~~~~~~a~~l~~~i~~~--~~~~i~lsgG~T 30 (232)
T cd01399 1 EEMSEAAAELIAELIREK--PPAVLGLATGST 30 (232)
T ss_pred ChHHHHHHHHHHHHHHhC--CCcEEEEcCCCC
Confidence 357778888899999886 478999999954
No 124
>PRK04447 hypothetical protein; Provisional
Probab=36.40 E-value=2.3e+02 Score=28.23 Aligned_cols=117 Identities=23% Similarity=0.269 Sum_probs=73.1
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
..+..|-|-||.=++++|+++..++. + .++.+. +-+|-|.....++
T Consensus 232 ~~~~pVlLdGG~qm~Aaalla~~i~p----------------------~-------~~~~~~--i~TT~wv~~D~~~--- 277 (351)
T PRK04447 232 SSGGPVLLAGGTQMLAVAALIKAIGK----------------------E-------DLENIA--IATTRWVAEDKSA--- 277 (351)
T ss_pred hcCCCEEEeChHHHHHHHHHHHHhCc----------------------c-------ccCCeE--EEEeeeeecCCCc---
Confidence 34666778899999998888843332 1 000000 3567777654443
Q ss_pred HHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcCCCCcccccccccCCChhhhhhhheeeeccccChHHHHHHHHHhh
Q 021929 115 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRW 194 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g~~prfrtDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w 194 (305)
+-..|+++||++.+..+.+ | =...|..|..|.+=...++.|-=.+.-. ..-
T Consensus 278 --~~~~l~~~i~~~~~~~~~~-------------------F------~~s~~~~L~~Ye~G~vKEGvGaGg~~~~--a~~ 328 (351)
T PRK04447 278 --DFKGLAEQIGVPLLASDLD-------------------F------SNSKHPGLRAYERGYVKEGVGAGGAALL--ALL 328 (351)
T ss_pred --CHHHHHHHhCCceEecCCC-------------------C------ccCCCHHHHHHcCCccccCcCHHHHHHH--HHH
Confidence 5577888899665444432 2 0256778888877655566665555422 221
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 021929 195 GARLTPSEVAEKVKHFFKYYS 215 (305)
Q Consensus 195 ~~~~s~~eia~kVk~ff~~~~ 215 (305)
. +.++++|.+.|+.++..+.
T Consensus 329 ~-G~~~~~~~~~ie~~~~~~~ 348 (351)
T PRK04447 329 N-GLSPEELLEAIEELYERLL 348 (351)
T ss_pred h-CCCHHHHHHHHHHHHHHHh
Confidence 2 5899999999999988754
No 125
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=34.03 E-value=1.3e+02 Score=31.26 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=71.0
Q ss_pred eEEeccCchHHHHHHHHHHHhHHHHHHH-H-----hcCchhHHHHHHHhhccCCC-------CC-------Ccch-hhhc
Q 021929 38 FLLPLSGGADSSSVAAIVGCMCQLVVKE-I-----ANGDEQVKADAIRIGRYANG-------EF-------PTES-REFA 96 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA~lv~~mc~~v~~a-~-----~~g~~~v~~~~~~ig~~~~~-------~~-------p~~~-~e~~ 96 (305)
=+|-|.||+|.=-.-++++ .++++.+. + -.||.++-.+++.+-...+. .. +... +.|+
T Consensus 122 DIILLaGGtDGG~~e~~l~-NA~~La~~~~~~pIIyAGN~~a~~~V~~il~~~~~~~~i~eNV~P~i~~ln~epaR~~I~ 200 (463)
T TIGR01319 122 DIILFAGGTDGGEEECGIH-NAKMLAEHGLDCAIIVAGNKDIQDEVQEIFDHADIFYRITDNVLPDLDHLNPEAAREAIC 200 (463)
T ss_pred CEEEEeCCcCCCchHHHHH-HHHHHHhcCCCCcEEEeCCHHHHHHHHHHHhcCCceEEecCCcCCCCCCcCchHHHHHHH
Confidence 3666899999876666554 22222211 1 13888888888876543211 11 1111 1111
Q ss_pred ----CCe------------EEEEEEcCCCCCHHHHHHHHHHHHHhC----C-cEEEEechHHHHHHHHHhhh--------
Q 021929 97 ----KRI------------FYTVFMGSENSSQETRMRAKKLADEIG----S-WHLDVSIDTVVSAFLSLFQT-------- 147 (305)
Q Consensus 97 ----~~~------------l~t~yM~t~nSs~et~~~A~~LA~~iG----i-~h~~i~Id~~v~a~~~~f~~-------- 147 (305)
+++ .....||| +..-...++.||+.++ + +...|||-.+-..+.+....
T Consensus 201 ~vF~~~Iv~akGl~~i~~~~~~~i~PT---P~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~~g~~~~~~~~ 277 (463)
T TIGR01319 201 DIFLKKIVEAKGLDNAEDFIGEELMPT---PAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAAAGELSKPDTT 277 (463)
T ss_pred HHHHHHHhcCCCHHHHHHHhCCcccCC---HHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhccCCCcccccce
Confidence 111 22344554 3344556677777543 3 48888887655544444332
Q ss_pred hcC-CCCc-ccccccccCCChhhhhhh
Q 021929 148 LTG-KRPR-YKLDEVDMGMTYEELSVY 172 (305)
Q Consensus 148 ~~g-~~pr-frtDE~dmGmtY~eLd~y 172 (305)
+-| ..|. -||=|.||||-|.....+
T Consensus 278 ~~glpEp~~kRTVEGDLGmr~sa~~v~ 304 (463)
T TIGR01319 278 LHGLEEPFAKRTVEGDLGMRVSAISLG 304 (463)
T ss_pred ecCCCcccccceeecCCcceeehhHHH
Confidence 112 2232 238899999999777754
No 126
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=31.06 E-value=1.2e+02 Score=29.38 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=56.7
Q ss_pred cCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHH--------------------hcCc
Q 021929 11 YHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--------------------ANGD 70 (305)
Q Consensus 11 ~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~--------------------~~g~ 70 (305)
|..+.|||.... +++.+.|...+.+. ||.++..-.-.+..+|+.+++.. +.-+
T Consensus 68 y~ls~eeI~e~~-----~~~~~~G~~~i~l~--gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~ 140 (343)
T TIGR03551 68 YLLSLEEIAERA-----AEAWKAGATEVCIQ--GGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSV 140 (343)
T ss_pred ccCCHHHHHHHH-----HHHHHCCCCEEEEE--eCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCH
Confidence 446778877765 34566688877776 66554333333344555555441 1113
Q ss_pred hhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcE
Q 021929 71 EQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWH 129 (305)
Q Consensus 71 ~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h 129 (305)
+++++.++..|-+. .+.+..|..+..+.--..++ ..+.+++-++.+.|.++|+..
T Consensus 141 ~e~l~~LkeAGl~~---i~~~~~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDS---MPGTAAEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCccc---ccCcchhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcc
Confidence 55666666555332 22222222221111111121 225567889999999999875
No 127
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=30.78 E-value=57 Score=33.69 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=37.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccccCCCCCcc
Q 021929 188 KNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRF 240 (305)
Q Consensus 188 ~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~yspDdnr~ 240 (305)
+.|+.=|-+.++.+|+..++|+|+.+.-| ++|.||---+-.|.|||.
T Consensus 103 D~lL~Pfv~~l~eee~~~klk~Fl~~lDR------Ti~DsF~HaNIGP~dt~~ 149 (487)
T PF11230_consen 103 DRLLEPFVQGLDEEEAYKKLKLFLIHLDR------TIPDSFCHANIGPEDTRA 149 (487)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHHhhc------cCcchhhccCCCCcccHH
Confidence 34444444468999999999999987763 689999777899999985
No 128
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=30.27 E-value=2.1e+02 Score=29.75 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=44.7
Q ss_pred CchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhh
Q 021929 69 GDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT 147 (305)
Q Consensus 69 g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a-~~~~f~~ 147 (305)
..+.|++.++.|+.- |.-+.=.+.-.|++|++-|.+|.+..|++...+|+..+-+. +..++..
T Consensus 168 AEervI~ELk~igKP----------------FvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 168 AEERVIEELKEIGKP----------------FVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HHHHHHHHHHHhCCC----------------EEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 346888888888742 44333333345789999999999999999999999876554 3344443
No 129
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=30.12 E-value=2.1e+02 Score=22.23 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 133 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~ 133 (305)
...|++.. |.++.++..-..+|+.-++++..++
T Consensus 28 aklViiA~-D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 28 VKEVVVAE-DADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred eeEEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 56778876 6777899999999999999998886
No 130
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=29.78 E-value=51 Score=35.31 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=35.6
Q ss_pred CcccccCCcHHHHHhcHHHHHHHHHHHhCC--CceEEeccCchHHHHH
Q 021929 6 PLKITYHSPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSV 51 (305)
Q Consensus 6 ~~~~~~~~peeEi~~~~a~~L~DyLrrsg~--~g~~LgLSGGiDSs~t 51 (305)
.|+++.+...+|++..+|..+-+.+++... +.++|+||||-.=..+
T Consensus 27 ~i~~~if~~~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~~ 74 (652)
T PRK02122 27 KIPTDIFESSEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIGV 74 (652)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHHH
Confidence 355667788999999999999999987543 4589999999544433
No 131
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=28.19 E-value=2e+02 Score=24.06 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhccC--CCCCCcchhhh-cCCeEEEEEEcCCCCCHH----HHHHHHHHHHHhCCcEE
Q 021929 71 EQVKADAIRIGRYA--NGEFPTESREF-AKRIFYTVFMGSENSSQE----TRMRAKKLADEIGSWHL 130 (305)
Q Consensus 71 ~~v~~~~~~ig~~~--~~~~p~~~~e~-~~~~l~t~yM~t~nSs~e----t~~~A~~LA~~iGi~h~ 130 (305)
.++.++++++.... .+...+++-.| |..++|++.+...+.+.. ....+.++|++.|+...
T Consensus 43 ~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p~~~~~~~~~l~~~~~~~L~~a~~~~~~SI 109 (137)
T cd02903 43 PELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLPNWSNGALKILKDIVSECLEKCEELSYTSI 109 (137)
T ss_pred HHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHCCCcEE
Confidence 34555555554332 23344555556 777888876653222111 12344455555555443
No 132
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=27.85 E-value=72 Score=28.91 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=17.5
Q ss_pred HHhcHHHHHHHHHHHhCCCceEEeccCch
Q 021929 18 IAFGPGCWLWDYLRRSGASGFLLPLSGGA 46 (305)
Q Consensus 18 i~~~~a~~L~DyLrrsg~~g~~LgLSGGi 46 (305)
++..++..+.+.+++. ..+.|+||||-
T Consensus 7 ~a~~i~~~i~~~i~~~--~~~~l~lsGGs 33 (219)
T cd01400 7 LADRIAEALAAAIAKR--GRFSLALSGGS 33 (219)
T ss_pred HHHHHHHHHHHHHHhc--CeEEEEECCCc
Confidence 4444555555555544 47899999994
No 133
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=27.64 E-value=1.2e+02 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHH---HHHHHHHHhCCcEEEEechH
Q 021929 101 YTVFMGSENSSQETRM---RAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 101 ~t~yM~t~nSs~et~~---~A~~LA~~iGi~h~~i~Id~ 136 (305)
+.+|+.|-.++.++++ +.+.|-+..|+++.++||+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 3467766666666666 45667788899999999974
No 134
>PRK12342 hypothetical protein; Provisional
Probab=27.38 E-value=1.3e+02 Score=28.38 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=18.2
Q ss_pred EcCCCCCHHHHHHHHHHHHHhCCcEEE
Q 021929 105 MGSENSSQETRMRAKKLADEIGSWHLD 131 (305)
Q Consensus 105 M~t~nSs~et~~~A~~LA~~iGi~h~~ 131 (305)
.|...+...|-+-.-.||+.||+++..
T Consensus 115 ~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 115 FGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred EcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 343333345667788999999998744
No 135
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.32 E-value=1.3e+02 Score=28.98 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=65.1
Q ss_pred cHHHHHhcHHHHHHHHHHHhCCCceEEeccCchH----------HHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhcc
Q 021929 14 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD----------SSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRY 83 (305)
Q Consensus 14 peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiD----------Ss~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~ 83 (305)
++.++.-+-.--|-.||+..+...++ |+||+- +..+..++ ..++.++.+||+.++.-+-.+- +
T Consensus 48 e~~~~~iG~vg~lik~l~~~~v~~vV--l~G~v~~Rp~~~~L~~d~~~l~~l----p~Iv~~~~~gDDaLLk~vi~~~-E 120 (279)
T COG3494 48 EYKEVSIGEVGKLIKLLKTEGVDRVV--LAGGVERRPNFRDLRPDKIGLAVL----PKIVEALIRGDDALLKAVIDFI-E 120 (279)
T ss_pred CCeEEeHHHHHHHHHHHHHcCCcEEE--EecccccCcchhhcccccchhhHH----HHHHHHhccCcHHHHHHHHHHH-H
Confidence 45556667777788999999988765 688887 33333333 2346778889998887775432 1
Q ss_pred CCCCCCcchhhhcCCeEE--EEEEcCC--CCCHHHHHHHHHHHHHhCC
Q 021929 84 ANGEFPTESREFAKRIFY--TVFMGSE--NSSQETRMRAKKLADEIGS 127 (305)
Q Consensus 84 ~~~~~p~~~~e~~~~~l~--t~yM~t~--nSs~et~~~A~~LA~~iGi 127 (305)
...+---.+.|++...+. +|+-... ++...+.+-|-++|..||.
T Consensus 121 ~~GfKvigahei~~~ll~~~g~lt~~~P~~~d~~dI~~g~~aA~~lg~ 168 (279)
T COG3494 121 SRGFKVIGAHEIVPGLLAETGPLTKKEPDNEDLRDIELGIEAANALGA 168 (279)
T ss_pred hcCcEEecHhhhhhhhccCCCcccCCCCChhhHHHHHHHHHHHHHhcc
Confidence 122323344444443321 2222211 4556778888899999874
No 136
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=25.87 E-value=80 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=20.6
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCchHHH
Q 021929 16 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSS 49 (305)
Q Consensus 16 eEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs 49 (305)
++++..++.-|.+.+++. ..+.|+||||---.
T Consensus 3 ~~~a~~i~~~i~~~i~~~--~~~~i~LsgGstp~ 34 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAER--GRAVIALSGGSTPK 34 (199)
T ss_dssp HHHHHHHHHHHHHHHHHC--SSEEEEE--SCTHH
T ss_pred HHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH
Confidence 456666677777777665 56999999995433
No 137
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=25.74 E-value=3.2e+02 Score=25.02 Aligned_cols=107 Identities=18% Similarity=0.315 Sum_probs=62.5
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
.+.++|.+++|+.+...-.++.. + . ++.. -.|.+|-.+.. -++ .+.+..+.++++
T Consensus 69 ~~~~ivS~~agi~~~~l~~~~~~-----------~-~-------~ivR----~mPn~~~~~~~-g~t-~~~~~~~~~~~~ 123 (245)
T TIGR00112 69 KDKLLISIAAGVTLEKLSQLLGG-----------T-R-------RVVR----VMPNTPAKVGA-GVT-AIAANANVSEED 123 (245)
T ss_pred CCCEEEEecCCCCHHHHHHHcCC-----------C-C-------eEEE----ECCChHHHHhC-CeE-EEecCCCCCHHH
Confidence 35799999999998775444310 0 0 0111 24555555543 234 444455677788
Q ss_pred HHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcCCCCccc-------c-cccccCCChhhhhhh
Q 021929 115 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK-------L-DEVDMGMTYEELSVY 172 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g~~prfr-------t-DE~dmGmtY~eLd~y 172 (305)
++.++.|-+.+|..+ .++ ++. ++.+..++|--|-|= . .-..+|++.++-..+
T Consensus 124 ~~~v~~lf~~~G~~~-~v~-E~~----~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~l 183 (245)
T TIGR00112 124 RALVLALFKAVGEVV-ELP-EAL----MDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALEL 183 (245)
T ss_pred HHHHHHHHHhCCCEE-EEC-HHH----cchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999665 444 433 344455555556432 1 112467777766654
No 138
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=25.32 E-value=1.8e+02 Score=26.51 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCCCHHHHHH-HHHHHHHhCCcEEEEechH
Q 021929 98 RIFYTVFMGSENSSQETRMR-AKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 98 ~~l~t~yM~t~nSs~et~~~-A~~LA~~iGi~h~~i~Id~ 136 (305)
|.+.-+.=|..|++.-+-.. |..+|++.|+..++|-|..
T Consensus 113 kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~ 152 (191)
T cd01455 113 AIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGS 152 (191)
T ss_pred cEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecC
Confidence 45555544544455555566 6899999999999999865
No 139
>PRK06683 hypothetical protein; Provisional
Probab=24.78 E-value=2.9e+02 Score=21.51 Aligned_cols=33 Identities=9% Similarity=-0.062 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 133 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~ 133 (305)
..-+++.. +.++.+++.-..+|+.-+++.+.++
T Consensus 28 aklViiA~-Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 28 VKEVVIAE-DADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred eeEEEEEC-CCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 55677765 7888999999999999999998876
No 140
>PF13941 MutL: MutL protein
Probab=24.67 E-value=1.8e+02 Score=30.08 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=78.2
Q ss_pred HHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHH------HhcCchhHHHHHHHhhccC-------CCCCCc----
Q 021929 28 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKE------IANGDEQVKADAIRIGRYA-------NGEFPT---- 90 (305)
Q Consensus 28 DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a------~~~g~~~v~~~~~~ig~~~-------~~~~p~---- 90 (305)
+-|+...-. +|-|+||+|.=-.-++++. .+++.++ +-.||.++-.+++.+-... +...|+
T Consensus 118 ~~i~~~~PD--iILLaGGtDgG~~~~il~n-A~~La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~l 194 (457)
T PF13941_consen 118 EEIREIRPD--IILLAGGTDGGNKEVILHN-AEMLAEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVL 194 (457)
T ss_pred HHHhccCCC--EEEEeCCccCCchHHHHHH-HHHHHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCc
Confidence 345555444 4446999998555555432 2222222 1148988888888765411 011121
Q ss_pred ---chhhhc-----CCe------------EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhh---
Q 021929 91 ---ESREFA-----KRI------------FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT--- 147 (305)
Q Consensus 91 ---~~~e~~-----~~~------------l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~--- 147 (305)
..++.. +++ +.+..||| +..-..-++.||+.-+-....+||-.+-..+.+....
T Consensus 195 n~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PT---P~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~~~~~~ 271 (457)
T PF13941_consen 195 NVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPT---PAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVAEGSPE 271 (457)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCC---HHHHHHHHHHHHhcccCCEEEEEccCcccchhhhccCCcc
Confidence 112211 111 22455664 3445666777887556689999996555444444321
Q ss_pred ----hcCCCCccc-ccccccCCChhhhhhhhe
Q 021929 148 ----LTGKRPRYK-LDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 148 ----~~g~~prfr-tDE~dmGmtY~eLd~y~r 174 (305)
.....|.++ |=|.||||-|...+.+..
T Consensus 272 ~~~~~~~~ep~~kRTVEGDLGmr~sa~~l~e~ 303 (457)
T PF13941_consen 272 IPGIVLKPEPYAKRTVEGDLGMRYSAPNLLEA 303 (457)
T ss_pred ccccccCCcchhhhheeccccceechHHHHHh
Confidence 122345544 889999999999987643
No 141
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=24.52 E-value=89 Score=27.12 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=17.2
Q ss_pred HHhcHHHHHHHHHHHhCCCceEEeccCc
Q 021929 18 IAFGPGCWLWDYLRRSGASGFLLPLSGG 45 (305)
Q Consensus 18 i~~~~a~~L~DyLrrsg~~g~~LgLSGG 45 (305)
.+..++..+.+.+++. +.+.|+||||
T Consensus 4 ~a~~i~~~i~~~~~~~--~~~~i~lsgG 29 (169)
T cd00458 4 ALKFIEDKXEKLLEEK--DDMVIGLGTG 29 (169)
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEECCC
Confidence 3444555555555544 4789999999
No 142
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=24.51 E-value=21 Score=31.17 Aligned_cols=10 Identities=60% Similarity=1.182 Sum_probs=8.9
Q ss_pred EeccCchHHH
Q 021929 40 LPLSGGADSS 49 (305)
Q Consensus 40 LgLSGGiDSs 49 (305)
+|+|||+||+
T Consensus 141 ~pm~gg~d~~ 150 (164)
T PF10624_consen 141 LPMHGGVDSA 150 (164)
T ss_pred CcccCCcccC
Confidence 6899999995
No 143
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=24.19 E-value=1.1e+02 Score=27.65 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcCCCCcccccccccCCChhhhhhhhe
Q 021929 114 TRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 114 t~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g~~prfrtDE~dmGmtY~eLd~y~r 174 (305)
+-.-|+.||+.+|.+|.. --.+|..+ ..+|||+.++.+.|++
T Consensus 13 ~TTva~~lAe~~gl~~vs--aG~iFR~~-----------------A~e~gmsl~ef~~~AE 54 (179)
T COG1102 13 KTTVARELAEHLGLKLVS--AGTIFREM-----------------ARERGMSLEEFSRYAE 54 (179)
T ss_pred hhHHHHHHHHHhCCceee--ccHHHHHH-----------------HHHcCCCHHHHHHHHh
Confidence 345689999999999954 22444432 1368888888887754
No 144
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=23.81 E-value=1.4e+02 Score=26.66 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEech
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id 135 (305)
..++.||| .|.-++.+.|.++-+++|++|+.-=++
T Consensus 4 ~V~IIMGS-~SD~~~mk~Aa~~L~~fgi~ye~~VvS 38 (162)
T COG0041 4 KVGIIMGS-KSDWDTMKKAAEILEEFGVPYEVRVVS 38 (162)
T ss_pred eEEEEecC-cchHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 57899998 466788899999999999999766554
No 145
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=23.37 E-value=6.6e+02 Score=24.02 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=10.7
Q ss_pred eEEeccCchHHHHHH
Q 021929 38 FLLPLSGGADSSSVA 52 (305)
Q Consensus 38 ~~LgLSGGiDSs~tA 52 (305)
|+--+|||-||+-..
T Consensus 3 vvaLiSGGKDScynm 17 (277)
T KOG2316|consen 3 VVALISGGKDSCYNM 17 (277)
T ss_pred EEEEEeCChHHHHHH
Confidence 333479999998743
No 146
>TIGR02728 spore_gerQ spore coat protein GerQ. Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=22.51 E-value=1.2e+02 Score=24.07 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 133 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~ 133 (305)
+-|+||-.+|+++-.-+--+-+-++-|-.|..|.
T Consensus 19 ~~T~y~Tfenn~ew~akvf~G~iE~AGRDhiiis 52 (82)
T TIGR02728 19 TATVYMTFENSPEWAARVFRGQIENAGRDHIVIS 52 (82)
T ss_pred eEEEEEEEcCChHhhhhheeeehhhcCcceEEEc
Confidence 8999999999886554555566777888887763
No 147
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=22.30 E-value=2.5e+02 Score=22.19 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=38.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHH--HHHHHHHhhhhcCC--CCcccccccccCCChhhhh
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV--VSAFLSLFQTLTGK--RPRYKLDEVDMGMTYEELS 170 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~--v~a~~~~f~~~~g~--~prfrtDE~dmGmtY~eLd 170 (305)
-.++|..+ ..+ --.+|+.+-+++|+++..+||+.. ...+...+...+|. .|..--+..-+ ..|+++-
T Consensus 9 ~Vvvysk~-~Cp--~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~i-GG~ddl~ 79 (99)
T TIGR02189 9 AVVIFSRS-SCC--MCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLV-GGLENVM 79 (99)
T ss_pred CEEEEECC-CCH--HHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEE-cCHHHHH
Confidence 35566653 222 345888899999999999999753 23344555555553 36543333233 2344433
No 148
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=21.81 E-value=1e+02 Score=30.34 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=38.2
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCC------CceEEeccCchHHHHHHHHH
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGA------SGFLLPLSGGADSSSVAAIV 55 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~------~g~~LgLSGGiDSs~tA~lv 55 (305)
-|+..++++++..++.|+..-.+++|. +++.|+|||+=+=...=-|+
T Consensus 36 nh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv 88 (336)
T KOG1794|consen 36 NHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGTDQEDKNRKLV 88 (336)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeeecccCCchhHHHHHH
Confidence 477888999999999999999999884 46889999997766554444
No 149
>PRK06852 aldolase; Validated
Probab=21.60 E-value=6e+02 Score=24.79 Aligned_cols=89 Identities=17% Similarity=0.107 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEech-----HHHHHHHHHhhhhcCCCCcc-c-----ccccccCCChhhhhh-------hh
Q 021929 112 QETRMRAKKLADEIGSWHLDVSID-----TVVSAFLSLFQTLTGKRPRY-K-----LDEVDMGMTYEELSV-------YG 173 (305)
Q Consensus 112 ~et~~~A~~LA~~iGi~h~~i~Id-----~~v~a~~~~f~~~~g~~prf-r-----tDE~dmGmtY~eLd~-------y~ 173 (305)
.+....|..+|.+||+...-++.. .-.+.|..... .+|..|-. . ++++=|-|.|+.+.. +|
T Consensus 187 ~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~-~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 187 PHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL-AAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH-hCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 467889999999999999888876 22233333222 34455522 1 444456677777652 33
Q ss_pred eeeecc-ccCh--HHHHHHHHHhhCCCCCHHHH
Q 021929 174 RLRKIF-HCGP--VSMFKNLCYRWGARLTPSEV 203 (305)
Q Consensus 174 rlrk~~-~~gP--~~mf~~l~~~w~~~~s~~ei 203 (305)
| .+. +--| ..|.+.+..--.++.+++|-
T Consensus 266 R--NIfQ~~~p~~~~~~~Ai~~IVH~~~s~~eA 296 (304)
T PRK06852 266 R--NIHQKPLDEAVRMCNAIYAITVEDKSVEEA 296 (304)
T ss_pred h--hhhcCCCchHHHHHHHHHHHHhCCCCHHHH
Confidence 3 221 2234 66766665554456777653
No 150
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=21.34 E-value=2.3e+02 Score=24.80 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEe------chHHHHHHHHHhhhhcCCCC
Q 021929 113 ETRMRAKKLADEIGSWHLDVS------IDTVVSAFLSLFQTLTGKRP 153 (305)
Q Consensus 113 et~~~A~~LA~~iGi~h~~i~------Id~~v~a~~~~f~~~~g~~p 153 (305)
.+.+.++.+|+..|..+..++ ++++|+.+.+.+....|+.|
T Consensus 128 v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~~ 174 (189)
T cd04121 128 VATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPP 174 (189)
T ss_pred CCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 357789999999999998887 78888887776655555554
No 151
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=21.27 E-value=3e+02 Score=21.13 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=30.6
Q ss_pred EEEEEEcC-CCCC-HHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcC
Q 021929 100 FYTVFMGS-ENSS-QETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 150 (305)
Q Consensus 100 l~t~yM~t-~nSs-~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g 150 (305)
=..+||.+ .+.+ =.--..|+++-+..|+++..+||+.- ..+.+.+...+|
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g 60 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSN 60 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhC
Confidence 35566653 1111 12346788888999999999998653 334444554555
No 152
>PRK07094 biotin synthase; Provisional
Probab=20.42 E-value=7.3e+02 Score=23.39 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=13.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCcEE
Q 021929 103 VFMGSENSSQETRMRAKKLADEIGSWHL 130 (305)
Q Consensus 103 ~yM~t~nSs~et~~~A~~LA~~iGi~h~ 130 (305)
+.+|...-+.+++.+...++.+++..+.
T Consensus 185 ~iiGlpget~ed~~~~l~~l~~l~~~~v 212 (323)
T PRK07094 185 FMVGLPGQTLEDLADDILFLKELDLDMI 212 (323)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCee
Confidence 3333333444555555555555555443
Done!