Query 021929
Match_columns 305
No_of_seqs 354 out of 1913
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 100.0 1.1E-46 3.7E-51 386.0 21.9 245 10-267 278-626 (634)
2 4f4h_A Glutamine dependent NAD 100.0 1.4E-32 4.6E-37 278.7 16.8 178 11-236 276-551 (565)
3 3sdb_A Glutamine-dependent NAD 100.0 7.1E-32 2.4E-36 278.6 15.1 211 3-251 320-664 (680)
4 3n05_A NH(3)-dependent NAD(+) 99.9 4.1E-27 1.4E-31 238.9 15.3 189 12-254 303-582 (590)
5 1xng_A NH(3)-dependent NAD(+) 99.9 1E-26 3.6E-31 214.3 15.1 177 13-238 3-264 (268)
6 1wxi_A NH(3)-dependent NAD(+) 99.9 4E-27 1.4E-31 219.4 12.1 105 13-147 18-124 (275)
7 1kqp_A NAD+ synthase, NH(3)-de 99.9 2E-26 6.7E-31 213.9 13.0 102 14-147 18-120 (271)
8 3p52_A NH(3)-dependent NAD(+) 99.9 3.8E-26 1.3E-30 210.0 10.9 163 13-228 4-247 (249)
9 3q4g_A NH(3)-dependent NAD(+) 99.9 6.3E-26 2.1E-30 212.3 11.4 102 13-143 18-120 (279)
10 2e18_A NH(3)-dependent NAD(+) 99.9 7.8E-25 2.7E-29 200.1 12.9 169 14-235 5-255 (257)
11 3dpi_A NAD+ synthetase; ssgcid 99.9 2E-24 6.7E-29 202.9 11.9 164 9-228 20-277 (285)
12 3fiu_A NH(3)-dependent NAD(+) 99.9 2.8E-23 9.4E-28 190.8 15.1 95 13-145 7-101 (249)
13 2hma_A Probable tRNA (5-methyl 99.1 5.3E-11 1.8E-15 115.1 6.1 111 29-177 3-137 (376)
14 2der_A TRNA-specific 2-thiouri 99.0 4.2E-10 1.4E-14 109.0 6.2 103 35-175 17-144 (380)
15 2vxo_A GMP synthase [glutamine 99.0 1.6E-09 5.6E-14 112.4 10.8 87 15-140 223-309 (697)
16 2dpl_A GMP synthetase, GMP syn 98.8 1.4E-08 4.6E-13 95.5 11.0 84 15-138 3-87 (308)
17 1gpm_A GMP synthetase, XMP ami 98.8 8.5E-09 2.9E-13 103.4 9.9 84 15-138 210-294 (525)
18 2pg3_A Queuosine biosynthesis 98.7 2.7E-08 9.1E-13 88.7 9.4 66 34-137 1-67 (232)
19 2ywb_A GMP synthase [glutamine 98.7 5.3E-08 1.8E-12 97.1 11.5 83 15-138 192-274 (503)
20 3bl5_A Queuosine biosynthesis 98.7 2.8E-08 9.5E-13 86.8 8.0 64 36-137 4-67 (219)
21 3uow_A GMP synthetase; structu 98.7 4.3E-08 1.5E-12 99.2 10.5 75 28-139 247-324 (556)
22 1jgt_A Beta-lactam synthetase; 98.6 1.3E-07 4.4E-12 94.7 10.4 84 13-136 217-302 (513)
23 3tqi_A GMP synthase [glutamine 98.6 1.3E-07 4.5E-12 94.9 9.1 80 19-138 217-297 (527)
24 1vl2_A Argininosuccinate synth 98.5 1.1E-07 3.8E-12 93.5 7.9 100 35-174 14-131 (421)
25 1q15_A CARA; CMPR, (2S,5S)-5-c 98.5 3.5E-07 1.2E-11 91.3 9.2 91 13-143 214-308 (503)
26 3k32_A Uncharacterized protein 98.5 2.4E-07 8.1E-12 81.7 7.0 64 35-138 6-69 (203)
27 1sur_A PAPS reductase; assimil 98.3 1.6E-06 5.6E-11 76.3 9.6 74 25-137 35-108 (215)
28 1ct9_A Asparagine synthetase B 98.3 2E-06 6.7E-11 86.9 10.6 95 16-136 205-301 (553)
29 2c5s_A THII, probable thiamine 98.3 1.2E-06 4E-11 85.4 8.6 69 36-142 188-262 (413)
30 1kor_A Argininosuccinate synth 98.3 1.4E-06 4.8E-11 85.0 8.1 64 36-138 1-65 (400)
31 1k92_A Argininosuccinate synth 98.2 1.1E-06 3.8E-11 87.2 6.7 66 36-139 11-77 (455)
32 3rjz_A N-type ATP pyrophosphat 98.2 1.6E-06 5.4E-11 79.3 6.9 63 36-136 5-73 (237)
33 2nz2_A Argininosuccinate synth 98.2 2.6E-06 8.9E-11 83.5 7.5 64 36-139 6-70 (413)
34 1wy5_A TILS, hypothetical UPF0 98.2 2.8E-06 9.6E-11 79.5 7.0 69 35-136 24-94 (317)
35 3a2k_A TRNA(Ile)-lysidine synt 98.0 2.2E-05 7.5E-10 77.4 9.8 75 27-135 6-87 (464)
36 2o8v_A Phosphoadenosine phosph 98.0 1.4E-05 4.9E-10 72.5 7.9 63 36-136 46-108 (252)
37 1ni5_A Putative cell cycle pro 97.8 3.6E-05 1.2E-09 75.3 8.4 76 26-136 6-83 (433)
38 1vbk_A Hypothetical protein PH 97.8 3.7E-05 1.3E-09 72.2 7.3 79 36-174 180-266 (307)
39 2wsi_A FAD synthetase; transfe 97.5 0.00021 7.2E-09 67.0 8.4 96 25-136 41-138 (306)
40 1zun_A Sulfate adenylyltransfe 97.5 0.00053 1.8E-08 64.9 11.1 84 18-137 31-114 (325)
41 2oq2_A Phosphoadenosine phosph 97.4 0.00045 1.5E-08 63.0 9.1 77 22-135 30-110 (261)
42 2goy_A Adenosine phosphosulfat 97.0 0.003 1E-07 57.9 9.5 74 23-136 43-116 (275)
43 3fwk_A FMN adenylyltransferase 95.5 0.042 1.5E-06 51.9 8.5 98 18-133 39-140 (308)
44 1fs5_A Glucosamine-6-phosphate 61.0 7.7 0.00026 34.5 4.3 38 9-46 3-43 (266)
45 3css_A 6-phosphogluconolactona 55.7 9.7 0.00033 34.3 4.0 40 6-45 5-46 (267)
46 2bkx_A Glucosamine-6-phosphate 54.8 9.5 0.00032 33.2 3.7 35 9-45 3-37 (242)
47 3hn6_A Glucosamine-6-phosphate 51.0 12 0.00042 34.3 3.9 40 7-46 22-64 (289)
48 1y89_A DEVB protein; structura 50.2 8.5 0.00029 33.9 2.6 35 9-45 4-38 (238)
49 1ne7_A Glucosamine-6-phosphate 50.2 13 0.00044 33.8 3.9 37 9-45 3-42 (289)
50 3nwp_A 6-phosphogluconolactona 45.8 12 0.00041 33.2 2.9 40 7-46 6-47 (233)
51 3ico_A 6PGL, 6-phosphogluconol 44.4 12 0.0004 34.0 2.7 39 7-45 24-64 (268)
52 3eb9_A 6-phosphogluconolactona 43.9 18 0.00063 32.6 3.9 37 9-45 7-45 (266)
53 2ri0_A Glucosamine-6-phosphate 41.8 15 0.00051 31.9 2.8 34 9-45 4-37 (234)
54 3lhi_A Putative 6-phosphogluco 41.5 13 0.00045 32.8 2.5 38 8-45 4-43 (232)
55 3oc6_A 6-phosphogluconolactona 36.5 27 0.00093 31.1 3.8 38 8-45 9-48 (248)
56 3tx2_A Probable 6-phosphogluco 35.5 19 0.00064 32.2 2.5 38 8-45 9-48 (251)
57 1vl1_A 6PGL, 6-phosphogluconol 33.8 14 0.00048 32.7 1.4 35 11-45 18-54 (232)
58 3lwd_A 6-phosphogluconolactona 31.2 26 0.00088 30.9 2.7 35 11-45 6-42 (226)
59 1u6t_A SH3 domain-binding glut 28.5 94 0.0032 24.9 5.4 35 101-135 2-39 (121)
60 1t1v_A SH3BGRL3, SH3 domain-bi 28.1 1.6E+02 0.0054 21.2 6.3 54 116-171 22-79 (93)
61 3e15_A Glucose-6-phosphate 1-d 27.0 45 0.0015 31.1 3.6 38 8-45 28-69 (312)
62 3o94_A Nicotinamidase; hydrola 22.4 1.4E+02 0.0047 25.8 5.7 29 110-138 181-210 (211)
63 3oa3_A Aldolase; structural ge 22.2 3.1E+02 0.01 25.3 8.3 51 71-133 158-208 (288)
64 4b4k_A N5-carboxyaminoimidazol 21.1 75 0.0026 27.6 3.6 32 100-132 24-55 (181)
65 2v79_A DNA replication protein 20.2 58 0.002 26.4 2.6 23 238-269 95-117 (135)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=1.1e-46 Score=386.04 Aligned_cols=245 Identities=27% Similarity=0.387 Sum_probs=210.7
Q ss_pred ccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHH-----HhhccC
Q 021929 10 TYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAI-----RIGRYA 84 (305)
Q Consensus 10 ~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~-----~ig~~~ 84 (305)
.++.|+|||..+++|||||||+++|.++++||||||||||++|+||++||+++++++ |+++|+.+++ +|....
T Consensus 278 ~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~~~ 355 (634)
T 3ilv_A 278 DDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPALQ 355 (634)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSCSS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--Cchhhhhhhhccccccccccc
Confidence 457889999999999999999999999999999999999999999999999999996 8899999987 344443
Q ss_pred CCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcCCCCccc--------
Q 021929 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK-------- 156 (305)
Q Consensus 85 ~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g~~prfr-------- 156 (305)
..+.|.+++++|+..++||||++.+|+.++.++|++||+.||++|++|||+++++++++.|...+|++|.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N 435 (634)
T 3ilv_A 356 HLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQN 435 (634)
T ss_dssp CTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHH
T ss_pred ccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhh
Confidence 456788999999999999999999999999999999999999999999999999999988877667666432
Q ss_pred --------------------------------------------------------------------------------
Q 021929 157 -------------------------------------------------------------------------------- 156 (305)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (305)
T Consensus 436 ~qaR~R~~~l~~~A~~~g~lvlgTgnksE~~~Gy~T~ygD~~~~~~Pl~~l~KteVr~la~~l~~~~glp~l~~i~~k~p 515 (634)
T 3ilv_A 436 IQARGRAPIIWMLTNVKQALLITTSNRSEGDVGYATMDGDTAGGIAPIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAP 515 (634)
T ss_dssp HHHHTTHHHHHHHHHHHTCEEBCCCCHHHHHTTCSCTTTTTCSSBBTTTTSCHHHHHHHHHHHHHHSCCGGGSSCC----
T ss_pred hhHHHHHHHHHHHHHhcCCEEeccCchhhHhhCCccccCCcccCCcccCCCcHHHHHHHHHHHHHcCCCchHHHHcCCCC
Confidence
Q ss_pred -----------ccccccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCC
Q 021929 157 -----------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLT 225 (305)
Q Consensus 157 -----------tDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~ 225 (305)
+||++| |||++||.|+++++..+++|++|+.++.+.|+ +++++|+++|++||++|++|||||+++|
T Consensus 516 SaeL~p~~~~q~de~~l-~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~~~--~~~~~i~~~v~~~~~~~~~~~~Kr~~~p 592 (634)
T 3ilv_A 516 TAELRPSEYTQTDERDL-MPYDVLARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLA 592 (634)
T ss_dssp ---------------CC-CTTTHHHHHHHHHTTSCCCHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHTHHHHTTCC
T ss_pred CcCcCcCCCCCCCcccc-CCHHHHHHHHHHHHHcCCCHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHhHhccccCC
Confidence 689999 99999999999999999999999999999995 9999999999999999999999999999
Q ss_pred CcccccccCCCCCcccccccccCCCCccchhhHHHHHHHhhc
Q 021929 226 PSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDG 267 (305)
Q Consensus 226 Ps~h~e~yspDdnr~d~r~fly~~~w~~~f~~id~~~~~~~~ 267 (305)
|++|+++||+|. |-|+| ||.- +-.|+ +.+++|+.
T Consensus 593 p~~~v~~~~~~p-r~~~r---~Pi~-~~~~~---~~~~~~~~ 626 (634)
T 3ilv_A 593 PSFHMDDFNIDP-RSWYR---FPIL-SSGFA---KELNDLDQ 626 (634)
T ss_dssp CBCCCSSCCCCT-TTTCC---CCSS-CCTTH---HHHHHTTC
T ss_pred CceEEeCCCCCC-CCcee---CCcC-CccHH---HHHHHHHh
Confidence 999999999983 33322 3322 22343 56666664
No 2
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=1.4e-32 Score=278.66 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=149.0
Q ss_pred cCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCc
Q 021929 11 YHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 90 (305)
Q Consensus 11 ~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~ 90 (305)
...+++||+.++++||||||+++|.+|++||||||+|||+||+|+ +++ ++.+
T Consensus 276 ~~~~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la-------~~a--------------lg~~------- 327 (565)
T 4f4h_A 276 ALSVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVA-------VDA--------------LGAE------- 327 (565)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHH--------------HCGG-------
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHH-------HHH--------------hCCc-------
Confidence 346688999999999999999999999999999999999999998 687 5655
Q ss_pred chhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhc----------CCCCccc----
Q 021929 91 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT----------GKRPRYK---- 156 (305)
Q Consensus 91 ~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~----------g~~prfr---- 156 (305)
++++++||+.+||+.|+++|+.||+.||+.|.+|+|+++++++...+.... |.++|.|
T Consensus 328 --------~v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l 399 (565)
T 4f4h_A 328 --------RVRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLL 399 (565)
T ss_dssp --------GEEEEECCCTTCCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred --------cEEEEeccccccccchHHHHHHHHHHhCCceeeeecchHHHHHHHHhhhcccCccchhhHhhhcchhhHHHH
Confidence 499999999999999999999999999999999999999999887765422 2233333
Q ss_pred --------------------------------------------------------------------------------
Q 021929 157 -------------------------------------------------------------------------------- 156 (305)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (305)
T Consensus 400 ~~~an~~g~lvlgTgn~sE~a~Gy~T~~Gd~~~~~~pi~~l~Kt~v~~l~~~~~~~~~~~~~~~ip~~i~~~~psaeL~~ 479 (565)
T 4f4h_A 400 MALSNKFGSIVLTTGNKSEMAVGYCTLYGDMAGGFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAELRE 479 (565)
T ss_dssp HHHHHHHCCEEEECCCHHHHHHTCSCTTTTTCSSEETTTTCCHHHHHHHHHHHHHTCCTTCCCSSCHHHHHC--------
T ss_pred HHHHhhcCCcccCCCchhhHhhccccccCCcccCchhccCccHHHHHHHHHHHhhhccccCcccChHHHcCCCCCcCcCC
Confidence
Q ss_pred --ccccccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccc--
Q 021929 157 --LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES-- 232 (305)
Q Consensus 157 --tDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~-- 232 (305)
+||++|| ||++||.|.+.....+.+|.+++.+ .+++ +.|++|+++|.+|||||+++||++|+.+
T Consensus 480 ~Q~ded~l~-~Y~~lD~~l~~~~~~~~~~~~i~~~-------~~~~----~~v~~~~~~~~~~~~KR~~~p~g~kv~~~a 547 (565)
T 4f4h_A 480 NQTDQDSLP-PYDVLDAIMRMYMEEDRPLAEIVAA-------GYSE----ADVKRVTRLIKINEYKRRQAPVGIRVTHRA 547 (565)
T ss_dssp -------CC-CHHHHHHHHHHHTTSCCCHHHHHHT-------TCCH----HHHHHHHHHHHHTHHHHTTSCCBCCCSSSC
T ss_pred CCCCcccCC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCH----HHHHHHHHHHHHhhhchhcCCCceEECCCC
Confidence 7899997 9999999998777777888877665 5665 5689999999999999999999999875
Q ss_pred cCCC
Q 021929 233 YSPE 236 (305)
Q Consensus 233 yspD 236 (305)
||||
T Consensus 548 f~~d 551 (565)
T 4f4h_A 548 FGRD 551 (565)
T ss_dssp SSTT
T ss_pred CCCC
Confidence 5553
No 3
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.97 E-value=7.1e-32 Score=278.62 Aligned_cols=211 Identities=16% Similarity=0.125 Sum_probs=161.4
Q ss_pred CCCCcccccCCcHH---------HHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhH
Q 021929 3 LSGPLKITYHSPEE---------EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQV 73 (305)
Q Consensus 3 ~~~~~~~~~~~pee---------Ei~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v 73 (305)
+++|+++.++.|++ ++...+..||+||++++|.++++||||||+||+++|+++ +++++
T Consensus 320 ~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~-------~~a~~------ 386 (680)
T 3sdb_A 320 LLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVA-------THAMD------ 386 (680)
T ss_dssp CCSCCCSCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHH-------HHHHH------
T ss_pred ccccccCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHH-------HHHHH------
Confidence 46788888888864 555566666999999999999999999999999887777 34422
Q ss_pred HHHHHHhh--ccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhhh---
Q 021929 74 KADAIRIG--RYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL--- 148 (305)
Q Consensus 74 ~~~~~~ig--~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~--- 148 (305)
++| .+ ++++|+|++.+++++++++|++||+.||++|++|||+++++++++.+...
T Consensus 387 -----~lg~~~~---------------~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~ 446 (680)
T 3sdb_A 387 -----REGRPRS---------------DILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHPYSV 446 (680)
T ss_dssp -----HTTCCGG---------------GEEEEECCC--------CHHHHHHHHHTCEEEECCCHHHHHHHHHHC------
T ss_pred -----HhCCCCc---------------eEEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHhchhhcC
Confidence 144 23 48999999988999999999999999999999999999998766543210
Q ss_pred ------------------------------------------cCCCCcc-c-----------------------------
Q 021929 149 ------------------------------------------TGKRPRY-K----------------------------- 156 (305)
Q Consensus 149 ------------------------------------------~g~~prf-r----------------------------- 156 (305)
.|.-.++ .
T Consensus 447 ~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn~sE~~~Gy~T~~~gD~~~~~~Pl~~l~K~eVr~lar~l~~~~~ 526 (680)
T 3sdb_A 447 GEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGE 526 (680)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCCHHHHHHTCSCCSSSTTCCSEETTTTSCHHHHHHHHHHHHHHCT
T ss_pred CCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCcHHhHhcCeeeccCCCccccccccCCCcHHHHHHHHHHHHhhcc
Confidence 1111111 0
Q ss_pred ------------------------------ccccccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCC---------
Q 021929 157 ------------------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGAR--------- 197 (305)
Q Consensus 157 ------------------------------tDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~--------- 197 (305)
+||++|| ||+.+|.|.+.....+++|.+|+.++.++|++.
T Consensus 527 ~~~~~~~ip~~i~~k~Ps~eL~p~~~~~~q~de~~lg-~Y~~~D~~L~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~ 605 (680)
T 3sdb_A 527 FGEKVGEVLQSVLDTEITPELIPTGEEELQSSEAKVG-PFALQDFSLFQVLRYGFRPSKIAFLAWHAWNDAERGNWPPGF 605 (680)
T ss_dssp TCHHHHHHHHHHHHHHHC-------------CHHHHC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSCTTSSCCCSSC
T ss_pred ccccccCchHHHhcCCCCcCcCCCCCCCCCCchhhcC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHhcccccccccccc
Confidence 5899998 999999999988889999999999999999764
Q ss_pred -------CCHHHHHHHHHHHHHHHHh-hhcccccCCCcccc-cccCCCCCcccccccccCCCC
Q 021929 198 -------LTPSEVAEKVKHFFKYYSI-NRHKMTVLTPSYHA-ESYSPEDNRFDLRQFLYNARW 251 (305)
Q Consensus 198 -------~s~~eia~kVk~ff~~~~~-NrHKrt~l~Ps~h~-e~yspDdnr~d~r~fly~~~w 251 (305)
|+.++|..|+++||++|+. |||||+++||++|+ ...|++ -|-|+| +|++=
T Consensus 606 ~~~~~~~y~~~~i~~~~~~f~~rf~~~~qfKr~~~p~gpkv~~~~~ls-pr~d~r---~psd~ 664 (680)
T 3sdb_A 606 PKSERPSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNGPKVSHGGALS-PRGDWR---APSDM 664 (680)
T ss_dssp CGGGCCCCCHHHHHHHHHHHHHHHHTTSHHHHTTCCCCCCCCTTCCCC-TTTTCC---CCSSC
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHhhhccCCcccCCCCCEeCCCCCcC-CCcccC---Ccccc
Confidence 8999999999999998887 99999999999999 544444 366544 66653
No 4
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.94 E-value=4.1e-27 Score=238.88 Aligned_cols=189 Identities=22% Similarity=0.222 Sum_probs=147.2
Q ss_pred CCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcc
Q 021929 12 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 91 (305)
Q Consensus 12 ~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~ 91 (305)
+.++|++...+++||+|||+++|.++++|+||||+|||++|+|+ +++ +|.+
T Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la-------~~a--------------lG~~-------- 353 (590)
T 3n05_A 303 LDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA-------CDA--------------LGAQ-------- 353 (590)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHH-------HHH--------------HCGG--------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHH-------HHH--------------hCcc--------
Confidence 56789999999999999999999999999999999999999998 566 5534
Q ss_pred hhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhh----------------------h--
Q 021929 92 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ----------------------T-- 147 (305)
Q Consensus 92 ~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~----------------------~-- 147 (305)
.+++++|++.++++.+.++|+++|+.||++|+++||+++++++...+. .
T Consensus 354 -------~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~ 426 (590)
T 3n05_A 354 -------NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQE 426 (590)
T ss_dssp -------GEEEEECCCSSCCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cEEEEEECCCCCCHHHHHHHHHHHHHcCCcEEEEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhc
Confidence 399999999999999999999999999999999999998887653221 0
Q ss_pred -------------hcCCCCc--------------------------------------cc----------------cccc
Q 021929 148 -------------LTGKRPR--------------------------------------YK----------------LDEV 160 (305)
Q Consensus 148 -------------~~g~~pr--------------------------------------fr----------------tDE~ 160 (305)
..|...+ .- +||+
T Consensus 427 g~~vl~TGn~se~~~Gy~t~~gd~~~~~~Pl~~l~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~L~p~q~de~ 506 (590)
T 3n05_A 427 GHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRPGQVDTD 506 (590)
T ss_dssp TCEEBCCCCHHHHHHTCCCSSCTTSCSBCTTTTSCHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC-------------
T ss_pred CCEEEeCCCHHHHhcCchhhcCCCccceeecCCCcHHHHHHHHHHhCcccccccccccChHHHhCCCCCCCCCCCCcCcc
Confidence 0011000 00 6888
Q ss_pred ccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccccCCCCCcc
Q 021929 161 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRF 240 (305)
Q Consensus 161 dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~yspDdnr~ 240 (305)
+|| +|+++|.|.+.....+..|.++..+ ++++ +.|++++++|.+|||||+++||.+++.+.|++
T Consensus 507 ~l~-~Y~~~D~~l~~~~~~~~~~~~i~~~-------~~~~----~~v~~~~~~~~~~~~KR~~~p~~~~v~~~~~~---- 570 (590)
T 3n05_A 507 SLP-DYPVLDAILELYVDRDTGADAIVAA-------GYDR----ELVVKTLRMVDTAEYKRRQYPPGTKISAKGFG---- 570 (590)
T ss_dssp ----CHHHHHHHHHHHHTSCCCHHHHHHT-------TCCH----HHHHHHHHHHHHTHHHHHSSCCCCCCSSSSSC----
T ss_pred ccC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCH----HHHHHHHHHHHhchhhhccCCCCceecCCCCC----
Confidence 887 9999998877665666677777664 4665 56888899999999999999999999998887
Q ss_pred cccccccCCCCccc
Q 021929 241 DLRQFLYNARWPYQ 254 (305)
Q Consensus 241 d~r~fly~~~w~~~ 254 (305)
+.+.||....|.
T Consensus 571 --~~~r~p~~~~~~ 582 (590)
T 3n05_A 571 --KDRRLPITNRWR 582 (590)
T ss_dssp --TTSCCCSSCCCC
T ss_pred --CCccCcccCCCc
Confidence 555688877663
No 5
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.94 E-value=1e-26 Score=214.25 Aligned_cols=177 Identities=19% Similarity=0.151 Sum_probs=135.2
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcch
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 92 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~ 92 (305)
.+.+++...+.+||++|+++++.++++|+||||+||+++|+++ +++ . +.
T Consensus 3 ~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~-------~~~--------------~-~~--------- 51 (268)
T 1xng_A 3 KDYQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKV--------------F-KE--------- 51 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHH--------------H-GG---------
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHH-------HHh--------------C-CC---------
Confidence 3578899999999999999999999999999999999999998 455 2 12
Q ss_pred hhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhh-------------------------
Q 021929 93 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT------------------------- 147 (305)
Q Consensus 93 ~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~------------------------- 147 (305)
.+++++|++..++.++.++|+++|+.+|++|++++|+++++++.+.+..
T Consensus 52 ------~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~ 125 (268)
T 1xng_A 52 ------NAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKS 125 (268)
T ss_dssp ------GEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHC
Confidence 3899999998888999999999999999999999999877655432210
Q ss_pred -------------hcCCCCccc-------------------------------------------ccccccCCChhhhhh
Q 021929 148 -------------LTGKRPRYK-------------------------------------------LDEVDMGMTYEELSV 171 (305)
Q Consensus 148 -------------~~g~~prfr-------------------------------------------tDE~dmGmtY~eLd~ 171 (305)
..|...++. +||++||++|+++|.
T Consensus 126 g~~vl~tg~~~E~~~Gy~t~~gd~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa~l~~~q~de~~lg~~y~~ld~ 205 (268)
T 1xng_A 126 DSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDP 205 (268)
T ss_dssp TCEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCCSSTTCCHHHHHSSCHHHHHH
T ss_pred CCEEEECCcHHHHhcCcccccCCCCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCcCcCCCCcchhhcCCCHHHHHH
Confidence 011111110 789999999999999
Q ss_pred hheeee---cc-ccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccccCCCCC
Q 021929 172 YGRLRK---IF-HCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDN 238 (305)
Q Consensus 172 y~rlrk---~~-~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~yspDdn 238 (305)
|++.+| .. .++|..+..+ ++++ +.|++|+++|.+|||||+ +||++++.+.....+
T Consensus 206 ~l~~~~~~~~~~~~~~~~i~~~-------~~~~----~~~~~~~~~~~~~~~kr~-~~~~~~~~~~~~~~~ 264 (268)
T 1xng_A 206 LLKDIEALFQTKPIDTETLAQL-------GYDE----ILVKNITSRIQKNAFKLE-LPAIAKRFNPELEHH 264 (268)
T ss_dssp HHHHHHHHSSSSCCCHHHHHHT-------TCCH----HHHHHHHHHHHHTGGGGS-CCEECCCC-------
T ss_pred HHHHHHHHhhccCCCHHHHHHc-------CCCH----HHHHHHHHHHHHhHhccc-CCCCccccchhhccc
Confidence 988763 22 2556666553 4554 349999999999999998 899999988776543
No 6
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.94 E-value=4e-27 Score=219.37 Aligned_cols=105 Identities=22% Similarity=0.210 Sum_probs=80.0
Q ss_pred CcHHHHHhcHHHHHHHHHHHhC-CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcc
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 91 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg-~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~ 91 (305)
.++++|.. +.+||+|||+++| .++++||||||||||++|+|+ +++++. ++.+...
T Consensus 18 ~~~~~i~~-~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~-------~~a~~~-----------lg~~~~~----- 73 (275)
T 1wxi_A 18 NAEEEIRR-SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLC-------QMAINE-----------LRLETGN----- 73 (275)
T ss_dssp CHHHHHHH-HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------HHHHHCC-----
T ss_pred CHHHHHHH-HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHH-------HHHHHH-----------hcccccc-----
Confidence 45555555 7899999999999 999999999999999999887 344221 2321000
Q ss_pred hhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHHHhhh
Q 021929 92 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT 147 (305)
Q Consensus 92 ~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi-~h~~i~Id~~v~a~~~~f~~ 147 (305)
-+-.+++++|+. ++..+.++|+++|+.||+ +|+++||+++++++.+.+..
T Consensus 74 ----~~~~v~av~~~~--~~~~~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~ 124 (275)
T 1wxi_A 74 ----ESLQFIAVRLPY--GVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALRE 124 (275)
T ss_dssp ----TTCEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH
T ss_pred ----ccceEEEEEeCC--CCccCHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHh
Confidence 000489999994 344579999999999999 99999999999988766543
No 7
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.94 E-value=2e-26 Score=213.88 Aligned_cols=102 Identities=26% Similarity=0.395 Sum_probs=78.4
Q ss_pred cHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchh
Q 021929 14 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 93 (305)
Q Consensus 14 peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~ 93 (305)
++++|. .+.+||+|||+++|.++++||||||+|||++|+|+ +++.+. +|.+...
T Consensus 18 ~~~~i~-~~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La-------~~a~~~-----------lg~~~~~------- 71 (271)
T 1kqp_A 18 PKQEIE-DRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLA-------QLAVES-----------IREEGGD------- 71 (271)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------HHHTTCC-------
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHH-------HHHHHH-----------hcccCCC-------
Confidence 444454 47999999999999999999999999999999887 344211 3332000
Q ss_pred hhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHHHhhh
Q 021929 94 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT 147 (305)
Q Consensus 94 e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi-~h~~i~Id~~v~a~~~~f~~ 147 (305)
-.+++++|+. .+..+.++|+++|+.||+ +|++++|+++++++.+.+..
T Consensus 72 ----~~v~av~~~~--~~~~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~ 120 (271)
T 1kqp_A 72 ----AQFIAVRLPH--GTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQ 120 (271)
T ss_dssp ----CEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH
T ss_pred ----ceEEEEEeCC--CCCCCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhh
Confidence 1489999984 334569999999999999 99999999999887765543
No 8
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.93 E-value=3.8e-26 Score=209.99 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=121.2
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcch
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 92 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~ 92 (305)
.+.+++...+.+||+||++++|.++++|+||||+||+++|+++ +++ +| .
T Consensus 4 ~~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~g-~--------- 52 (249)
T 3p52_A 4 MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------KRA--------------LK-E--------- 52 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHH-------HHH--------------HT-T---------
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-------HHH--------------cC-C---------
Confidence 5788999999999999999999999999999999999999998 455 34 3
Q ss_pred hhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhh-----hhcCCCCccc-----------
Q 021929 93 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ-----TLTGKRPRYK----------- 156 (305)
Q Consensus 93 ~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~-----~~~g~~prfr----------- 156 (305)
.+++++|++..+++++.++|+++|+.+|++|++++|+++++++...+. ..+|...|.|
T Consensus 53 ------~v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~ 126 (249)
T 3p52_A 53 ------NVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALK 126 (249)
T ss_dssp ------SEEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------cEEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHC
Confidence 389999999888889999999999999999999999998877654211 0011111111
Q ss_pred -----------------------------------------------------------------ccccccCCChhhhhh
Q 021929 157 -----------------------------------------------------------------LDEVDMGMTYEELSV 171 (305)
Q Consensus 157 -----------------------------------------------------------------tDE~dmGmtY~eLd~ 171 (305)
+||++|||||++||.
T Consensus 127 g~~vl~tgn~se~~~g~~t~~gd~~~~i~PL~~l~K~eV~~la~~~gip~~i~~k~psa~L~~~q~de~~lg~~y~~ld~ 206 (249)
T 3p52_A 127 NSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYTKIDE 206 (249)
T ss_dssp TEEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC-----------------CCCCHHHH
T ss_pred CCeEEeCCCHHHHHccchhhhccccCccccccCCcHHHHHHHHHHcCCcHHhcCCCCCcccCCCCCCHHHcCCCHHHHHH
Confidence 899999999999999
Q ss_pred hheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcc
Q 021929 172 YGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY 228 (305)
Q Consensus 172 y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~ 228 (305)
|.+.. .++..+..+ ++++ +.|+++.+++.+|+|||+ +||..
T Consensus 207 ~l~~~----~~~~~~~~~-------~~~~----~~~~~i~~~~~~~~~kr~-~p~~~ 247 (249)
T 3p52_A 207 GLKAL----ETNDEKLLR-------TLDP----SLIAMLKNRMQKNAFKGK-MPEIL 247 (249)
T ss_dssp HHHHH----HTTCHHHHH-------HSCH----HHHHHHHHHHHHTGGGGS-CCEEC
T ss_pred HHHHc----cChHHHHHc-------CCCH----HHHHHHHHHHHhhhhccC-CCCCC
Confidence 87643 232233222 3554 568899999999999997 77764
No 9
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.93 E-value=6.3e-26 Score=212.34 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=78.5
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcch
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 92 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~ 92 (305)
.+.++....+.+||+|||+++|.++++||||||+||+++|+++ +++++. +|.+.. |.
T Consensus 18 ~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~-------~~A~~~-----------Lg~~~~---~~-- 74 (279)
T 3q4g_A 18 IDPQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLA-------QLAVEE-----------LNQQHN---TT-- 74 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------HHHHTT---CS--
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHHHHH-----------hCcccc---cC--
Confidence 3444555556699999999999999999999999999999887 333221 442200 00
Q ss_pred hhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHH
Q 021929 93 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLS 143 (305)
Q Consensus 93 ~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi-~h~~i~Id~~v~a~~~ 143 (305)
+-.++++.|+. +++.+.++|+.+|+.||+ +|++|||+++|+++..
T Consensus 75 ----~~~v~av~~p~--~~~~~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~ 120 (279)
T 3q4g_A 75 ----EYQFIAVRLPY--GEQKDEDEAQLALSFIRPTHSVSVNIKAGVDGLHA 120 (279)
T ss_dssp ----CCEEEEEECCS--SSCSCHHHHHHHHHHHCCSEEEECCCHHHHHHHHH
T ss_pred ----CceEEEEEecC--CChHHHHHHHHHHHHhCCCeEEEEECHHHHHHHHH
Confidence 11589999994 455678999999999999 9999999999998766
No 10
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.92 E-value=7.8e-25 Score=200.14 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=127.7
Q ss_pred cHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchh
Q 021929 14 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 93 (305)
Q Consensus 14 peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~ 93 (305)
+.+++...+..||++| +.++++|+||||+||+++|+++ +++ .+..
T Consensus 5 ~~~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~-------~~~--------------~g~~---------- 49 (257)
T 2e18_A 5 DYDKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLA-------TKA--------------LGKE---------- 49 (257)
T ss_dssp CHHHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHH-------HHH--------------HCGG----------
T ss_pred CHHHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHH-------HHh--------------cCCC----------
Confidence 4678889999999999 7889999999999999999998 555 2323
Q ss_pred hhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhh--------------------------
Q 021929 94 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT-------------------------- 147 (305)
Q Consensus 94 e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~-------------------------- 147 (305)
.+++++|++.. + ++.++|+++|+.+|++|++++|+++++++...+..
T Consensus 50 -----~v~av~~~~~~-~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~ 122 (257)
T 2e18_A 50 -----KVLGLIMPYFE-N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSL 122 (257)
T ss_dssp -----GEEEEECCSSC-S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cEEEEEeCCCC-c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHc
Confidence 38999999864 4 88999999999999999999999876654433210
Q ss_pred -------------hcCCCCcc-------c------------------------------------ccccccCCChhhhhh
Q 021929 148 -------------LTGKRPRY-------K------------------------------------LDEVDMGMTYEELSV 171 (305)
Q Consensus 148 -------------~~g~~prf-------r------------------------------------tDE~dmGmtY~eLd~ 171 (305)
..|...++ + +||++||++|+++|.
T Consensus 123 g~~vl~tg~~~e~~~Gy~t~~g~~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~l~~~q~de~~lg~~y~~ld~ 202 (257)
T 2e18_A 123 GRIVLGTSNRSEFLTGYFTKWGDGASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAGLWEGQTDEDELGISYNLLDE 202 (257)
T ss_dssp TCEEECCCCHHHHHHTCSCTTSTTCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCCSSTTCCHHHHHTSCHHHHHH
T ss_pred CCEEEEcCchhHHhcCCeeccCCCccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCCcCCCCcCHhhcCCCHHHHHH
Confidence 01111111 0 788999999999999
Q ss_pred hheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcccccccCC
Q 021929 172 YGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSP 235 (305)
Q Consensus 172 y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~h~e~ysp 235 (305)
|++.....+..|..+... .++++ +.|++|+++|.+|||||+ +||.+++.+.|.
T Consensus 203 ~l~~~~~~~~~~~~i~~~------~~~~~----~~~~~~~~~~~~~~~kr~-~~~~~~~~~~~~ 255 (257)
T 2e18_A 203 ILWRMIDLKIGKEEIAKD------LGIPL----SLVERVEELIKKSEHKRR-LPIGPSFEDLIV 255 (257)
T ss_dssp HHHHHHTSCCCHHHHHHT------TTCCH----HHHHHHHHHHHTTGGGSS-CCCCCCCGGGEE
T ss_pred HHHHHHhcCCCHHHHHHH------hCCCH----HHHHHHHHHHHHhHhhcc-CCCCCCCCCCCC
Confidence 887654444555555542 03444 358999999999999998 899998876543
No 11
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.91 E-value=2e-24 Score=202.90 Aligned_cols=164 Identities=21% Similarity=0.311 Sum_probs=118.9
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCC
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEF 88 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~ 88 (305)
+++..+.++....+..||+|||+++|.++++||||||+||+++|+++. +++++ +|.+. +
T Consensus 20 ~~~~~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~----~A~da--------------LG~~~--~- 78 (285)
T 3dpi_A 20 VSPTFDARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQ----LAVER--------------LRASG--Y- 78 (285)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHH--------------HHHTT--C-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHH----HHHHH--------------hcccC--c-
Confidence 344455666677778999999999999999999999999999998872 11333 45331 0
Q ss_pred CcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHhhh--------------hcCCCC
Q 021929 89 PTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIG-SWHLDVSIDTVVSAFLSLFQT--------------LTGKRP 153 (305)
Q Consensus 89 p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iG-i~h~~i~Id~~v~a~~~~f~~--------------~~g~~p 153 (305)
...++++.|+. +++.+.++|+++|+.+| ++|++|||+++++++.+.+.. .+|.++
T Consensus 79 --------~~~viav~~p~--~~~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~Niqa 148 (285)
T 3dpi_A 79 --------DARFVAMRLPY--GAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKA 148 (285)
T ss_dssp --------CCEEEEEECCS--CC---CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred --------ccEEEEEEcCC--CCHHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHH
Confidence 00378888884 56678899999999999 799999999999988776642 234445
Q ss_pred ccc-----------------------------------------------------------------------------
Q 021929 154 RYK----------------------------------------------------------------------------- 156 (305)
Q Consensus 154 rfr----------------------------------------------------------------------------- 156 (305)
|.|
T Consensus 149 R~Rm~~L~~~A~~~g~lVlgTgn~sE~~~Gy~T~~GD~~~~~~Pl~~l~K~eV~~la~~lg~p~~i~~k~pSa~L~~l~~ 228 (285)
T 3dpi_A 149 RERMIAQYAVAGARNGVVIGTDHAAESVMGFFTKFGDGGADVLPLAGLTKRRVRALARMLGADEPLVLKTPTADLETLRP 228 (285)
T ss_dssp HHHHHHHHHHHHHTTEEEBCCCCHHHHHHHHHHCCCCCCCSBCTTTTCCHHHHHHHHHHTTCCHHHHTCCCHHHHGGGSC
T ss_pred HHHHHHHHHHHHHCCCEEEeCccHHhhhCCcccccCCCceeEeeecCCcHHHHHHHHHHcCCCHHHhcCCCCCCcccCCC
Confidence 544
Q ss_pred --ccccccCCChhhhhhhheeeeccccChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhhcccccCCCcc
Q 021929 157 --LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY 228 (305)
Q Consensus 157 --tDE~dmGmtY~eLd~y~rlrk~~~~gP~~mf~~l~~~w~~~~s~~eia~kVk~ff~~~~~NrHKrt~l~Ps~ 228 (305)
+||++|||||++||.|.+- ..+++ +.|+++.++|.+|+|||. +||.+
T Consensus 229 ~q~DE~~lg~~Y~~lD~~L~~--------------------~~~~~----~~~~~i~~~~~~~~hKR~-~p~~~ 277 (285)
T 3dpi_A 229 QRPDEHAYGITYEQIDDFLEG--------------------KPMDD----AVAETVLRFYDATRHKRA-LPYTM 277 (285)
T ss_dssp SCC--CCCCCCHHHHHHHHHT--------------------CSCCH----HHHHHHHHHHHHHHHHHH-CC---
T ss_pred CCCcHHHcCCCHHHHHHHHcC--------------------CCCCH----HHHHHHHHHHHHhhhccc-CCCCC
Confidence 7999999999999988531 13554 557888899999999997 56543
No 12
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.90 E-value=2.8e-23 Score=190.83 Aligned_cols=95 Identities=28% Similarity=0.357 Sum_probs=84.3
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcch
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 92 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~ 92 (305)
.+.+++...+..||+||++++|.++++|+||||+||+++|+++ +++ +.+
T Consensus 7 ~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~-------~~~---------------~~~--------- 55 (249)
T 3fiu_A 7 FSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLA-------VKT---------------GLP--------- 55 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHH-------HHT---------------TSC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH-------HHh---------------CCC---------
Confidence 5678889999999999999999999999999999999999998 444 323
Q ss_pred hhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHh
Q 021929 93 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 145 (305)
Q Consensus 93 ~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f 145 (305)
++ +++|++..++.++.++|+++|+.+|++|++++|++.++++...+
T Consensus 56 ------~~-av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~ 101 (249)
T 3fiu_A 56 ------TT-ALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLAST 101 (249)
T ss_dssp ------EE-EEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHT
T ss_pred ------CE-EEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHH
Confidence 35 99999877889999999999999999999999999998877655
No 13
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.11 E-value=5.3e-11 Score=115.06 Aligned_cols=111 Identities=22% Similarity=0.372 Sum_probs=78.8
Q ss_pred HHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCC
Q 021929 29 YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE 108 (305)
Q Consensus 29 yLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~ 108 (305)
++++....+++|+||||+||+++|.++ +++ +.+ +++++|...
T Consensus 3 ~~~~~~~~kVlVa~SGGvDSsv~a~lL-------~~~---------------G~~----------------V~~v~~~~~ 44 (376)
T 2hma_A 3 AMSDNSKTRVVVGMSGGVDSSVTALLL-------KEQ---------------GYD----------------VIGIFMKNW 44 (376)
T ss_dssp --CCGGGSEEEEECCSSHHHHHHHHHH-------HHT---------------TCE----------------EEEEEEECC
T ss_pred hhhhCCCCeEEEEEeCHHHHHHHHHHH-------HHc---------------CCc----------------EEEEEEECC
Confidence 455556678999999999999999998 333 433 889999754
Q ss_pred C--------CCHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhh--hcCCCC----------ccc---ccccccCC
Q 021929 109 N--------SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRP----------RYK---LDEVDMGM 164 (305)
Q Consensus 109 n--------Ss~et~~~A~~LA~~iGi~h~~i~Id~~v~a-~~~~f~~--~~g~~p----------rfr---tDE~dmGm 164 (305)
. ++.++.++|+++|+++|++|+++++++.+.. +++.|.. ..|.+| ||+ .-..++|.
T Consensus 45 ~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~ 124 (376)
T 2hma_A 45 DDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGA 124 (376)
T ss_dssp CCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTC
T ss_pred CcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 2467899999999999999999999876532 2232221 224444 555 11235899
Q ss_pred Chhhhhhhheeee
Q 021929 165 TYEELSVYGRLRK 177 (305)
Q Consensus 165 tY~eLd~y~rlrk 177 (305)
+|..++||++.+.
T Consensus 125 d~IatGH~a~d~~ 137 (376)
T 2hma_A 125 DYVATGHYARVAR 137 (376)
T ss_dssp SEEECCCSEEEEE
T ss_pred CEEEECcchhhhh
Confidence 9999999987643
No 14
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.97 E-value=4.2e-10 Score=109.05 Aligned_cols=103 Identities=24% Similarity=0.386 Sum_probs=74.3
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC-----
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 109 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n----- 109 (305)
..+++|+||||+||+++|+++ +++ +. .+++++|....
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL-------~~~---------------G~----------------~V~~v~~~~~~~~~~~ 58 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLL-------QQQ---------------GY----------------QVEGLFMKNWEEDDGE 58 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHH-------HTT---------------CC----------------EEEEEEEECCCCCSHH
T ss_pred CCEEEEEEEChHHHHHHHHHH-------HHc---------------CC----------------eEEEEEEEcCcccccc
Confidence 457999999999999999998 332 43 38899997532
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEEechHHHHH-HHHHhhh--hcCCCC----------ccc--cc-ccc-cCCChhhh
Q 021929 110 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRP----------RYK--LD-EVD-MGMTYEEL 169 (305)
Q Consensus 110 ---Ss~et~~~A~~LA~~iGi~h~~i~Id~~v~a-~~~~f~~--~~g~~p----------rfr--tD-E~d-mGmtY~eL 169 (305)
++.++.++|+++|+++|++|+++|+++.+.. +.+.|.. ..|.+| ||+ .+ ..+ +|.+|.++
T Consensus 59 ~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~Iat 138 (380)
T 2der_A 59 EYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 138 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEEC
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 2467899999999999999999999976532 2232221 124444 555 11 123 89999999
Q ss_pred hhhhee
Q 021929 170 SVYGRL 175 (305)
Q Consensus 170 d~y~rl 175 (305)
+||++.
T Consensus 139 GH~a~d 144 (380)
T 2der_A 139 GHYVRR 144 (380)
T ss_dssp CCSCEE
T ss_pred cccccc
Confidence 999874
No 15
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.97 E-value=1.6e-09 Score=112.37 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=73.4
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhh
Q 021929 15 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 94 (305)
Q Consensus 15 eeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e 94 (305)
.+++...+..+|++|+. .++++|+||||+||+++|+|+ .++ +|.+
T Consensus 223 ~~~~~~~~i~~Ir~~v~---~~~vvv~lSGGvDSsVla~Ll-------~~a--------------lG~~----------- 267 (697)
T 2vxo_A 223 VQNRELECIREIKERVG---TSKVLVLLSGGVDSTVCTALL-------NRA--------------LNQE----------- 267 (697)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHH--------------SCGG-----------
T ss_pred hhHHHHHHHHHHHHHhc---ccceEEEccCchHHHHHHHHH-------HHh--------------cCCc-----------
Confidence 45677778889999984 478999999999999999999 566 4533
Q ss_pred hcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHH
Q 021929 95 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA 140 (305)
Q Consensus 95 ~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v~a 140 (305)
.+++++|+...++..+.++|+++|+++|++|+.+++++.+..
T Consensus 268 ----~V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~f~~ 309 (697)
T 2vxo_A 268 ----QVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYN 309 (697)
T ss_dssp ----GEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHHHHT
T ss_pred ----eEEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHHHHh
Confidence 389999998777677889999999999999999999987654
No 16
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.84 E-value=1.4e-08 Score=95.55 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=65.6
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhh
Q 021929 15 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 94 (305)
Q Consensus 15 eeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e 94 (305)
.+.+......+|++++. .++++|+||||+||+++|+++ .++ ++.+
T Consensus 3 ~~~~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll-------~~~--------------~g~~----------- 47 (308)
T 2dpl_A 3 WGRFVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLA-------HKA--------------IGDR----------- 47 (308)
T ss_dssp HHHHHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHH-------HHH--------------HGGG-----------
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHH-------HHh--------------hCCC-----------
Confidence 35566777889999985 368999999999999999998 454 3422
Q ss_pred hcCCeEEEEEEcCCCCCHHHHHHHHH-HHHHhCCcEEEEechHHH
Q 021929 95 FAKRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 95 ~~~~~l~t~yM~t~nSs~et~~~A~~-LA~~iGi~h~~i~Id~~v 138 (305)
++++++.+.....++.+.+++ +|+++|++|+.+++++.+
T Consensus 48 -----v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~f 87 (308)
T 2dpl_A 48 -----LHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDRF 87 (308)
T ss_dssp -----EEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHHH
T ss_pred -----EEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHHH
Confidence 888988865544456677777 667899999999998753
No 17
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.83 E-value=8.5e-09 Score=103.43 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=67.3
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhh
Q 021929 15 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 94 (305)
Q Consensus 15 eeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e 94 (305)
.+++......+|++++. .++++|+||||+||+++|+++ .++ +| .
T Consensus 210 ~~~~~~~~~~~ir~~v~---~~~vvvalSGGvDSsv~a~ll-------~~a--------------~G-~----------- 253 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVG---DDKVILGLSGGVDSSVTAMLL-------HRA--------------IG-K----------- 253 (525)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHH--------------HG-G-----------
T ss_pred HHHHHHhhhhhhhhhhc---ccceEEEecCCCCHHHHHHHH-------HHH--------------hC-C-----------
Confidence 34566677788888874 368999999999999999998 465 44 2
Q ss_pred hcCCeEEEEEEcCCCCCHHHHHHHHH-HHHHhCCcEEEEechHHH
Q 021929 95 FAKRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 95 ~~~~~l~t~yM~t~nSs~et~~~A~~-LA~~iGi~h~~i~Id~~v 138 (305)
.+++++|.....+..+.+.|.+ +|+.+|++|+.+++++.+
T Consensus 254 ----~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f 294 (525)
T 1gpm_A 254 ----NLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRF 294 (525)
T ss_dssp ----GEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHH
T ss_pred ----CEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHH
Confidence 3899999976666667778866 899999999999999854
No 18
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.75 E-value=2.7e-08 Score=88.65 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHH
Q 021929 34 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 113 (305)
Q Consensus 34 g~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~e 113 (305)
|.++++|++|||+||+++++++ .++ + . .++++++.....+..
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll-------~~~---------------~-~---------------~v~av~~~~g~~~~~ 42 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQA-------LQD---------------Y-D---------------DVHCITFDYGQRHRA 42 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHH-------HHH---------------C-S---------------EEEEEEEESSSSCHH
T ss_pred CCCCEEEEecCcHHHHHHHHHH-------HHc---------------C-C---------------CEEEEEEECCCCCHH
Confidence 4568999999999999999988 343 3 2 277888876555567
Q ss_pred HHHHHHHHHHHhCCc-EEEEechHH
Q 021929 114 TRMRAKKLADEIGSW-HLDVSIDTV 137 (305)
Q Consensus 114 t~~~A~~LA~~iGi~-h~~i~Id~~ 137 (305)
+.+.|+++|+++|++ |++++++.+
T Consensus 43 e~~~a~~~a~~lgi~~~~vi~~~~l 67 (232)
T 2pg3_A 43 EIEVAQELSQKLGAAAHKVLDVGLL 67 (232)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred HHHHHHHHHHHhCCCceEEEeChhH
Confidence 899999999999999 999999843
No 19
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.72 E-value=5.3e-08 Score=97.12 Aligned_cols=83 Identities=23% Similarity=0.211 Sum_probs=66.7
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhh
Q 021929 15 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 94 (305)
Q Consensus 15 eeEi~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e 94 (305)
.+.+......+|++++ +..+++|+||||+||+++|.++ .++ + .
T Consensus 192 ~~~~~~~~i~~ir~~~---~~~kvvvalSGGvDSsvla~ll-------~~~---------------g-~----------- 234 (503)
T 2ywb_A 192 PEHVLEELLREVRERA---GKDRVLLAVSGGVDSSTLALLL-------AKA---------------G-V----------- 234 (503)
T ss_dssp HHHHHHHHHHHHHHHH---TTSEEEEEECSSHHHHHHHHHH-------HHH---------------T-C-----------
T ss_pred chhhhHHHHHhhhhhc---cCccEEEEecCCcchHHHHHHH-------HHc---------------C-C-----------
Confidence 3445556667888877 3368999999999999999998 343 3 2
Q ss_pred hcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHHH
Q 021929 95 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 95 ~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~v 138 (305)
.++++++.+.....++.+.++++|+++|++|+.+++++.+
T Consensus 235 ----~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f 274 (503)
T 2ywb_A 235 ----DHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERF 274 (503)
T ss_dssp ----EEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHH
T ss_pred ----eEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHH
Confidence 3889999876656678999999999999999999998754
No 20
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.71 E-value=2.8e-08 Score=86.76 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=52.5
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
+.++|+||||+||++++.++ .+. + . .++++++.....+.++.
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll-------~~~---------------~-~---------------~v~~~~~~~~~~~~~e~ 45 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWA-------LKE---------------F-E---------------EVETVTFHYNQRHSQEV 45 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH---------------C-S---------------EEEEEEEESSCTTCHHH
T ss_pred CCEEEEccCcHHHHHHHHHH-------HHc---------------C-C---------------ceEEEEEeCCCCCHHHH
Confidence 57999999999999999988 343 3 2 37788887655555788
Q ss_pred HHHHHHHHHhCCcEEEEechHH
Q 021929 116 MRAKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~~ 137 (305)
+.|+++|+++|++|+.++++.+
T Consensus 46 ~~a~~~a~~lgi~~~~~~~~~~ 67 (219)
T 3bl5_A 46 EVAKSIAEKLGVKNHLLDMSLL 67 (219)
T ss_dssp HHHHHHHHTTCCCEEEEECGGG
T ss_pred HHHHHHHHHhCCCeEEEeChHH
Confidence 9999999999999999999873
No 21
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.70 E-value=4.3e-08 Score=99.17 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=58.8
Q ss_pred HHHHHhC-CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEc
Q 021929 28 DYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG 106 (305)
Q Consensus 28 DyLrrsg-~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~ 106 (305)
+++|+.| .++++|+||||+||+++|+|+ .++ +|. .+++++|.
T Consensus 247 ~~ir~~g~~~~vvvalSGGvDSsv~a~ll-------~~~--------------~G~----------------~v~~v~vd 289 (556)
T 3uow_A 247 KNIEKYKHDHYVIAAMSGGIDSTVAAAYT-------HKI--------------FKE----------------RFFGIFID 289 (556)
T ss_dssp HHHGGGTTTCEEEEECCSSHHHHHHHHHH-------HHH--------------HGG----------------GEEEEEEE
T ss_pred eeeeecCCCceEEEEcccCCCHHHHHHHH-------HHH--------------hCC----------------eEEEEEEe
Confidence 3344446 678999999999999999999 566 553 38999998
Q ss_pred CCCCCHHHHHHH-HHHHHHh-CCcEEEEechHHHH
Q 021929 107 SENSSQETRMRA-KKLADEI-GSWHLDVSIDTVVS 139 (305)
Q Consensus 107 t~nSs~et~~~A-~~LA~~i-Gi~h~~i~Id~~v~ 139 (305)
+......+.+.| +.+|+.+ |++|+.+|+++.+.
T Consensus 290 ~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f~ 324 (556)
T 3uow_A 290 NGLLRKNEAENVYTFLKSTFPDMNITKIDASENFL 324 (556)
T ss_dssp CSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHHH
Confidence 765555556666 6799999 99999999998653
No 22
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.61 E-value=1.3e-07 Score=94.72 Aligned_cols=84 Identities=29% Similarity=0.301 Sum_probs=67.7
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCC--CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCc
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 90 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~--~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~ 90 (305)
.+.++....+..+|.+.+++.-. ..+.+.||||+||+++|+++ .+. + .
T Consensus 217 ~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala-------~~~---------------~-~------- 266 (513)
T 1jgt_A 217 LPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACA-------HRA---------------A-G------- 266 (513)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHH-------HHH---------------H-S-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHH-------HHh---------------C-C-------
Confidence 45788899999999999988653 47899999999999999998 344 2 1
Q ss_pred chhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 91 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 91 ~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
.+.|+.++..+ ..+...|+++|+.+|+.|+.+++++
T Consensus 267 --------~v~tfti~~~~--~~E~~~A~~vA~~lg~~h~~i~i~~ 302 (513)
T 1jgt_A 267 --------ELDTVSMGTDT--SNEFREARAVVDHLRTRHREITIPT 302 (513)
T ss_dssp --------SCEEEEEECSS--CCCHHHHHHHHHHHTCEEEEEECCH
T ss_pred --------CceEEEcCCCC--CCHHHHHHHHHHHhCCCcEEEECCH
Confidence 15566666554 3578999999999999999999987
No 23
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.56 E-value=1.3e-07 Score=94.92 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=59.6
Q ss_pred HhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCC
Q 021929 19 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKR 98 (305)
Q Consensus 19 ~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~ 98 (305)
.......|.+++ +.++++|+||||+||+++|.++ .++ +|..
T Consensus 217 ~~~~i~~i~~~v---~~~kvlvalSGGvDSsvla~ll-------~~~--------------~G~~--------------- 257 (527)
T 3tqi_A 217 IEDSIRDIQEKV---GKEQVIVGLSGGVDSAVTATLV-------HKA--------------IGDQ--------------- 257 (527)
T ss_dssp HHHHHHHHHHHH---TTSCEEEECTTTHHHHHHHHHH-------HHH--------------HGGG---------------
T ss_pred HHHHHHHHHHhc---CCCeEEEEEecCcCHHHHHHHH-------HHH--------------hCCe---------------
Confidence 333444555554 3478999999999999999999 455 4532
Q ss_pred eEEEEEEcCCCCCHHHHHHHHH-HHHHhCCcEEEEechHHH
Q 021929 99 IFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 99 ~l~t~yM~t~nSs~et~~~A~~-LA~~iGi~h~~i~Id~~v 138 (305)
++++++.....+.++.+.+.+ +|+++|++|+.+++++.+
T Consensus 258 -v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~ 297 (527)
T 3tqi_A 258 -LVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRF 297 (527)
T ss_dssp -EEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHH
T ss_pred -EEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHH
Confidence 889998765545555666655 999999999999998765
No 24
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.54 E-value=1.1e-07 Score=93.48 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=69.0
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
..+++|++|||+|||++|+++ +++ |.+ +++++|-... .++
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~L-------ke~---------------G~e----------------Viavt~d~Gq--~~E 53 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWL-------CEK---------------GFD----------------VIAYVANVGQ--KDD 53 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHH-------HHT---------------TCE----------------EEEEEEESSC--CCC
T ss_pred cCCEEEEeCCcHHHHHHHHHH-------HHC---------------CCe----------------EEEEEEEcCC--HHH
Confidence 356999999999999999998 443 433 8888887643 267
Q ss_pred HHHHHHHHHHhCC-cEEEEechHHHH-HHHHHhhhh----cCCCC---------ccc---ccccccCCChhhhhhhhe
Q 021929 115 RMRAKKLADEIGS-WHLDVSIDTVVS-AFLSLFQTL----TGKRP---------RYK---LDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 115 ~~~A~~LA~~iGi-~h~~i~Id~~v~-a~~~~f~~~----~g~~p---------rfr---tDE~dmGmtY~eLd~y~r 174 (305)
.++|+++|+++|+ +|+++|+.+.|. .+...+... .|..| .++ .-..++|.+|..+|++++
T Consensus 54 le~A~~vA~~lGi~~~~VvDl~eef~~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~k 131 (421)
T 1vl2_A 54 FVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGK 131 (421)
T ss_dssp HHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHcCCceEEEEecHHHHHHhhhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeC
Confidence 9999999999999 999999987443 322222111 12222 011 112347999999998863
No 25
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.47 E-value=3.5e-07 Score=91.30 Aligned_cols=91 Identities=25% Similarity=0.283 Sum_probs=69.2
Q ss_pred CcHHHHHhcHHHHHHHHHHHhCC--CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCc
Q 021929 13 SPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 90 (305)
Q Consensus 13 ~peeEi~~~~a~~L~DyLrrsg~--~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~ 90 (305)
.+.++....+...|.+-+++.-. ..+.+.||||+||+++|+++ .+. + .
T Consensus 214 ~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala-------~~~---------------~-~------- 263 (503)
T 1q15_A 214 LPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALA-------SRH---------------F-K------- 263 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHH-------TTT---------------C-S-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHH-------HHh---------------C-C-------
Confidence 45788888899999999988543 45789999999999999988 232 2 1
Q ss_pred chhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechH--HHHHHHH
Q 021929 91 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT--VVSAFLS 143 (305)
Q Consensus 91 ~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~--~v~a~~~ 143 (305)
.+.|+.++..++ .+...|+++|+.+|++|+.+++++ +++.+.+
T Consensus 264 --------~~~~~t~~~~~~--~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~ 308 (503)
T 1q15_A 264 --------KLNTYSIGTELS--NEFEFSQQVADALGTHHQMKILSETEVINGIIE 308 (503)
T ss_dssp --------EEEEEEEEETTB--CCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHH
T ss_pred --------CcEEEEEeCCCc--cHHHHHHHHHHHhCCceEEEECCHHHHHHHHHH
Confidence 256666665433 578999999999999999999987 4444433
No 26
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.46 E-value=2.4e-07 Score=81.68 Aligned_cols=64 Identities=23% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et 114 (305)
.++++|++|||+||++++.++ .+ .+.+ +.++++...... +
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll-------~~---------------~g~~----------------v~~~~v~~~~~~--~ 45 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVIL-------KK---------------LGYN----------------PHLITINFGVIP--S 45 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHH-------HH---------------TTEE----------------EEEEEEECSSSC--T
T ss_pred CCeEEEEEECcHHHHHHHHHH-------HH---------------cCCC----------------eEEEEEeCCCch--H
Confidence 457999999999999999887 22 2322 677777654444 6
Q ss_pred HHHHHHHHHHhCCcEEEEechHHH
Q 021929 115 RMRAKKLADEIGSWHLDVSIDTVV 138 (305)
Q Consensus 115 ~~~A~~LA~~iGi~h~~i~Id~~v 138 (305)
.+.|+++|+++|++|+.++++..+
T Consensus 46 ~~~~~~~a~~lgi~~~~~~~~~~~ 69 (203)
T 3k32_A 46 YKLAEETAKILGFKHKVITLDRKI 69 (203)
T ss_dssp THHHHHHHHHHTCEEEEEECCTHH
T ss_pred HHHHHHHHHHhCCCEEEEECCHHH
Confidence 789999999999999999998753
No 27
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.35 E-value=1.6e-06 Score=76.28 Aligned_cols=74 Identities=12% Similarity=-0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEE
Q 021929 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 104 (305)
Q Consensus 25 ~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~y 104 (305)
-|...+++.| ..++|++|||+||++++.++ .+. +.+ +..++
T Consensus 35 ~l~~~~~~~~-~~v~Va~SGGkDS~vLL~ll-------~~~---------------~~~----------------v~~v~ 75 (215)
T 1sur_A 35 RVAWALDNLP-GEYVLSSSFGIQAAVSLHLV-------NQI---------------RPD----------------IPVIL 75 (215)
T ss_dssp HHHHHHHHCC-SEEEEECCCCTTHHHHHHHH-------HHH---------------STT----------------CEEEE
T ss_pred HHHHHHHHcC-CCEEEEecCCHHHHHHHHHH-------HHh---------------CCC----------------CeEEE
Confidence 3444455543 57999999999999999888 333 211 56677
Q ss_pred EcCCCCCHHHHHHHHHHHHHhCCcEEEEechHH
Q 021929 105 MGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 105 M~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~ 137 (305)
+-+....+++.+.++++|+++|++++++..+..
T Consensus 76 vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~ 108 (215)
T 1sur_A 76 TDTGYLFPETYRFIDELTDKLKLNLKVYRATES 108 (215)
T ss_dssp EECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred eeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC
Confidence 766555689999999999999999999987653
No 28
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.32 E-value=2e-06 Score=86.87 Aligned_cols=95 Identities=21% Similarity=0.174 Sum_probs=61.4
Q ss_pred HHHHhcHHHHHHHHHHHhCC--CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchh
Q 021929 16 EEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 93 (305)
Q Consensus 16 eEi~~~~a~~L~DyLrrsg~--~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~ 93 (305)
++....+-..|.+-+++.-. ..+.+.||||+||+++|+++. +...+ ....+..... +-
T Consensus 205 ~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~-------~~~~~---~~~~~~~~~a-----~~----- 264 (553)
T 1ct9_A 205 VTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITK-------KYAAR---RVEDQERSEA-----WW----- 264 (553)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHH-------HHC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHH-------Hhhcc---cccccccccc-----cc-----
Confidence 44455666777777777543 358889999999999999983 33110 0000000000 00
Q ss_pred hhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 94 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 94 e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
..++|+.++..++ .++..|+++|+.+|+.|++++++.
T Consensus 265 ----~~l~tfsig~~~~--~E~~~A~~vA~~lg~~h~~i~~~~ 301 (553)
T 1ct9_A 265 ----PQLHSFAVGLPGS--PDLKAAQEVANHLGTVHHEIHFTV 301 (553)
T ss_dssp ------CEEEEEESTTC--HHHHHHHHHHHHHTCEEEEEECCH
T ss_pred ----CceeEEEecCCCC--cHHHHHHHHHHHhCCCCEEEECCH
Confidence 0256777776544 678999999999999999999975
No 29
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.31 E-value=1.2e-06 Score=85.44 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=55.4
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCC-CCCHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-NSSQET 114 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~-nSs~et 114 (305)
.+++|++|||+||++++.++ .+ .|. .++++++... ..++.+
T Consensus 188 ~kvlvalSGGvDS~vll~ll-------~~---------------~G~----------------~v~av~v~~~~~~~~~~ 229 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLT-------MK---------------RGV----------------SVEAVHFHSPPFTSERA 229 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHH-------HH---------------BTE----------------EEEEEEEECTTTSCHHH
T ss_pred CeEEEEeCCCChHHHHHHHH-------HH---------------cCC----------------cEEEEEEeCCCCCCHHH
Confidence 35999999999999999988 22 232 3788888753 456788
Q ss_pred HHHHHHHHHHh-----CCcEEEEechHHHHHHH
Q 021929 115 RMRAKKLADEI-----GSWHLDVSIDTVVSAFL 142 (305)
Q Consensus 115 ~~~A~~LA~~i-----Gi~h~~i~Id~~v~a~~ 142 (305)
.+.++++|+.+ |++|+.+++++.+.++.
T Consensus 230 ~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~i~ 262 (413)
T 2c5s_A 230 KQKVIDLAQELTKYCKRVTLHLVPFTEVQKTIN 262 (413)
T ss_dssp HHHHHHHHHHHGGGSSCEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHH
Confidence 89999999999 99999999998876544
No 30
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.28 E-value=1.4e-06 Score=84.96 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=52.1
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
++++|++|||+||++++.++ .++ .+.+ ++++++.... .++.
T Consensus 1 ~kVvva~SGG~DSsvll~ll-------~~~--------------~g~~----------------V~av~vd~g~--~~e~ 41 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWL-------KET--------------YRAE----------------VIAFTADIGQ--GEEV 41 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH--------------HTCE----------------EEEEEEESSC--SSCH
T ss_pred CcEEEEEeChHHHHHHHHHH-------HHh--------------hCCc----------------EEEEEEeCCC--HHHH
Confidence 36899999999999999988 444 3433 7788887654 4679
Q ss_pred HHHHHHHHHhCC-cEEEEechHHH
Q 021929 116 MRAKKLADEIGS-WHLDVSIDTVV 138 (305)
Q Consensus 116 ~~A~~LA~~iGi-~h~~i~Id~~v 138 (305)
+.|+++|+++|+ +|+++++++.+
T Consensus 42 e~a~~~A~~lGi~~~~vvd~~~ef 65 (400)
T 1kor_A 42 EEAREKALRTGASKAIALDLKEEF 65 (400)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeCcHHH
Confidence 999999999999 79999998654
No 31
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.24 E-value=1.1e-06 Score=87.17 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=52.2
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
++++|++|||+||++++.++ .+. +.+ ++++++-......++.
T Consensus 11 ~KVvVA~SGGlDSSvll~~L-------~e~---------------G~e----------------Viavtvd~Gq~~~~el 52 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWM-------RQK---------------GAV----------------PYAYTANLGQPDEEDY 52 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHH-------HHT---------------TCE----------------EEEEEEECCCTTCSCT
T ss_pred CeEEEEEcChHHHHHHHHHH-------HHc---------------CCE----------------EEEEEEEcCCCCHHHH
Confidence 57999999999999999888 332 333 7777776543334678
Q ss_pred HHHHHHHHHhCC-cEEEEechHHHH
Q 021929 116 MRAKKLADEIGS-WHLDVSIDTVVS 139 (305)
Q Consensus 116 ~~A~~LA~~iGi-~h~~i~Id~~v~ 139 (305)
+.|+++|+++|+ +|+++|+++.+.
T Consensus 53 e~a~~~A~~lGi~~~~vvD~~eef~ 77 (455)
T 1k92_A 53 DAIPRRAMEYGAENARLIDCRKQLV 77 (455)
T ss_dssp THHHHHHHHHTCSEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeChHHHH
Confidence 999999999999 899999987554
No 32
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.23 E-value=1.6e-06 Score=79.29 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=42.8
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEE--cCC-CC--
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM--GSE-NS-- 110 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM--~t~-nS-- 110 (305)
-++++.+|||.||+++++++ .++ |.+ +.++++ +.. .+
T Consensus 5 MKvvvl~SGGkDSs~al~~l-------~~~---------------G~e----------------V~~L~~~~~~~~~s~~ 46 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWA-------IKN---------------RFS----------------VKFLVTMVSENEESYM 46 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHH-------HHT---------------TCE----------------EEEEEEEECC------
T ss_pred CEEEEEecCcHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEEcCCCCCccc
Confidence 47999999999999999988 343 433 444432 211 11
Q ss_pred -CHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 111 -SQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 111 -s~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
.....+.|+.+|+.+|++|+.+++..
T Consensus 47 ~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 47 YHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp --CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred cCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 11335789999999999999999975
No 33
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.17 E-value=2.6e-06 Score=83.47 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=50.8
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
++++|++|||+||++++.++ .+. +. .++++++..... ++.
T Consensus 6 ~kVvvalSGGlDSsvll~lL-------~e~---------------G~----------------eV~av~vd~g~~--~e~ 45 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWL-------KEQ---------------GY----------------DVIAYLANIGQK--EDF 45 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHH-------HHT---------------TE----------------EEEEEEEESSCC--CCH
T ss_pred CeEEEEEcChHHHHHHHHHH-------HHc---------------CC----------------EEEEEEEECCcH--HHH
Confidence 57999999999999999888 332 32 277888875432 578
Q ss_pred HHHHHHHHHhCCc-EEEEechHHHH
Q 021929 116 MRAKKLADEIGSW-HLDVSIDTVVS 139 (305)
Q Consensus 116 ~~A~~LA~~iGi~-h~~i~Id~~v~ 139 (305)
+.|+++|+++|++ |+++++++.+.
T Consensus 46 e~a~~~A~~lGi~~~~vvd~~~ef~ 70 (413)
T 2nz2_A 46 EEARKKALKLGAKKVFIEDVSREFV 70 (413)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeChHHHH
Confidence 9999999999998 88999986543
No 34
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.15 E-value=2.8e-06 Score=79.50 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=50.3
Q ss_pred CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCC--CCH
Q 021929 35 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQ 112 (305)
Q Consensus 35 ~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~n--Ss~ 112 (305)
..+++|++|||+||++++.++. +... +++.+ .++++++.... .+.
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~-------~~~~-----------~~g~~---------------~v~av~vd~g~r~~s~ 70 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLL-------KLKN-----------YFSLK---------------EVALAHFNHMLRESAE 70 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHH-------HSTT-----------TTTCS---------------EEEEEEEECCSSTHHH
T ss_pred CCEEEEEecchHHHHHHHHHHH-------HHHH-----------HcCCC---------------EEEEEEEECCCCcccH
Confidence 3679999999999999998883 2100 01211 16667765433 356
Q ss_pred HHHHHHHHHHHHhCCcEEEEechH
Q 021929 113 ETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 113 et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
++.+.++++|+++|++|++++++.
T Consensus 71 ~~~~~v~~~a~~lgi~~~v~~~~~ 94 (317)
T 1wy5_A 71 RDEEFCKEFAKERNMKIFVGKEDV 94 (317)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEec
Confidence 788999999999999999999874
No 35
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=97.98 E-value=2.2e-05 Score=77.43 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=52.8
Q ss_pred HHHHHHhC----CCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEE
Q 021929 27 WDYLRRSG----ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYT 102 (305)
Q Consensus 27 ~DyLrrsg----~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t 102 (305)
..++++.+ ...++|++|||+||++++.++. +... +.+. .+++
T Consensus 6 ~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~-------~~~~-----------~~~~----------------~v~a 51 (464)
T 3a2k_A 6 RAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFL-------SLRD-----------EWKL----------------QVIA 51 (464)
T ss_dssp HHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHH-------HHHH-----------TTTC----------------BCEE
T ss_pred HHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHH-------HHHH-----------HcCC----------------eEEE
Confidence 34455543 3579999999999999999883 2211 0122 2566
Q ss_pred EEEcCCCC---CHHHHHHHHHHHHHhCCcEEEEech
Q 021929 103 VFMGSENS---SQETRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 103 ~yM~t~nS---s~et~~~A~~LA~~iGi~h~~i~Id 135 (305)
+++-.... |.++.+.++++|+++|++|++++++
T Consensus 52 vhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~ 87 (464)
T 3a2k_A 52 AHVDHMFRGRESEEEMEFVKRFCVERRILCETAQID 87 (464)
T ss_dssp EEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 66654333 4567889999999999999999886
No 36
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.98 E-value=1.4e-05 Score=72.52 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=51.2
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
..++|++|||+||++++.++ .+. ..+ +..+++-+....++|.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll-------~~~---------------~~~----------------v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLV-------NQI---------------RPD----------------IPVILTDTGYLFPETY 87 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHH-------HHH---------------STT----------------CEEEECCCSCBCHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHH-------HHh---------------CCC----------------CeEEEecCCCCCHHHH
Confidence 57999999999999998888 333 212 5667777766678999
Q ss_pred HHHHHHHHHhCCcEEEEechH
Q 021929 116 MRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~ 136 (305)
+.++++|+++|++++++..+.
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCSS
T ss_pred HHHHHHHHHhCCceEEEcCCC
Confidence 999999999999999987764
No 37
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.83 E-value=3.6e-05 Score=75.26 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEE
Q 021929 26 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 105 (305)
Q Consensus 26 L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM 105 (305)
|..++.. ...++|++|||+||++++.++. +.... ..+. .++++++
T Consensus 6 l~~~l~~--~~~vlVa~SGG~DS~~Ll~ll~-------~~~~~----------~~g~----------------~v~avhv 50 (433)
T 1ni5_A 6 LNRQLLT--SRQILVAFSGGLDSTVLLHQLV-------QWRTE----------NPGV----------------ALRAIHV 50 (433)
T ss_dssp HHHHHTT--CSEEEEECCSBHHHHHHHHHHH-------HHHTT----------STTC----------------EEEEEEE
T ss_pred HHHhcCC--CCEEEEEEcchHHHHHHHHHHH-------HHHHh----------cCCC----------------eEEEEEE
Confidence 4555543 3679999999999999998883 32100 0111 3777777
Q ss_pred cCCC--CCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 106 GSEN--SSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 106 ~t~n--Ss~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
-... .|.++.+.++++|+++|++|++++++.
T Consensus 51 dhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 83 (433)
T 1ni5_A 51 HHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (433)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred ECCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 6432 345678899999999999999988763
No 38
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.79 E-value=3.7e-05 Score=72.23 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=61.6
Q ss_pred CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHH
Q 021929 36 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 115 (305)
Q Consensus 36 ~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~ 115 (305)
..++++||| +||+++|+++ .+. |.+ +++++|. .++.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll-------~~~---------------G~~----------------v~~v~~~---~~~~~~ 217 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLM-------MKR---------------GVE----------------VIPVYIG---KDDKNL 217 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHH-------HHB---------------TCE----------------EEEEEES---CSSHHH
T ss_pred CcEEEEEeC-CcHHHHHHHH-------HhC---------------CCe----------------EEEEEEE---ECHHHH
Confidence 357999999 9999999988 333 533 8899997 355778
Q ss_pred HHHHHHHHHh-------CCcEEEEe-chHHHHHHHHHhhhhcCCCCcccccccccCCChhhhhhhhe
Q 021929 116 MRAKKLADEI-------GSWHLDVS-IDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGR 174 (305)
Q Consensus 116 ~~A~~LA~~i-------Gi~h~~i~-Id~~v~a~~~~f~~~~g~~prfrtDE~dmGmtY~eLd~y~r 174 (305)
+.|+++|+.+ |++++.++ +.+.++ + . .++|..+..+||++.
T Consensus 218 ~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~~-~---A--------------~~~ga~~I~tG~~~~ 266 (307)
T 1vbk_A 218 EKVRSLWNLLKRYSYGSKGFLVVAESFDRVLK-L---I--------------RDFGVKGVIKGLRPN 266 (307)
T ss_dssp HHHHHHHHHHHTTCTTSCCCCEEESSHHHHHH-H---H--------------HHHTCCEEECCCCGG
T ss_pred HHHHHHHHHHhhhccCCCCcEEEeCCCHHHHH-H---H--------------HHcCCCEEEECcccc
Confidence 9999999999 99999999 887761 1 1 247888888888743
No 39
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00021 Score=66.96 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=58.0
Q ss_pred HHHHHHHHhCC--CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEE
Q 021929 25 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYT 102 (305)
Q Consensus 25 ~L~DyLrrsg~--~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t 102 (305)
-|.+.+++.+. ..++|++|||.||++++.|+. +++.. ..+.++. .......+ ..+-+..+..
T Consensus 41 il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~-------~~l~~---~~~~~~~-~~~~~~~~-----~~~~~~~i~v 104 (306)
T 2wsi_A 41 LLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYL-------SCLWE---YFFIKAQ-NSQFDFEF-----QSFPMQRLPT 104 (306)
T ss_dssp HHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHH-------HHHHH---HHHHHHH-HC-------------CCCCCEEE
T ss_pred HHHHHHHHcccccCCEEEEecCCHHHHHHHHHHH-------HHHhh---hcccccc-cccccccc-----cccCCCCeeE
Confidence 44444554443 579999999999999999883 33210 0000000 00000000 0000113778
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 103 VFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 103 ~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
+|.-+....++|.+.++++++++|++++++..+.
T Consensus 105 v~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~~ 138 (306)
T 2wsi_A 105 VFIDQEETFPTLENFVLETSERYCLSLYESQRQS 138 (306)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHTTEEEEECCC--
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 8888877889999999999999999999887653
No 40
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.52 E-value=0.00053 Score=64.86 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=58.0
Q ss_pred HHhcHHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcC
Q 021929 18 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAK 97 (305)
Q Consensus 18 i~~~~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~ 97 (305)
+......-|...+... .+++|++|||.||++++.|+ .++... ...
T Consensus 31 le~~a~~ilr~~~~~~--~~ivVa~SGGkDS~vLL~Ll-------~~~~~~------------~~~-------------- 75 (325)
T 1zun_A 31 LEAESIHIIREVAAEF--DNPVMLYSIGKDSAVMLHLA-------RKAFFP------------GKL-------------- 75 (325)
T ss_dssp HHHHHHHHHHHHHHHC--SSEEEECCSSHHHHHHHHHH-------HHHHTT------------SCC--------------
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEEcChHHHHHHHHHH-------HHhccc------------cCC--------------
Confidence 3333444555555553 58999999999999999888 344110 001
Q ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechHH
Q 021929 98 RIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 137 (305)
Q Consensus 98 ~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~~ 137 (305)
.+..++.-+....++|.+.++++|+++|++++++..+..
T Consensus 76 -~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~ 114 (325)
T 1zun_A 76 -PFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG 114 (325)
T ss_dssp -SSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---
T ss_pred -CEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH
Confidence 145667776666789999999999999999999987653
No 41
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00045 Score=62.96 Aligned_cols=77 Identities=8% Similarity=-0.075 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEE
Q 021929 22 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 101 (305)
Q Consensus 22 ~a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~ 101 (305)
+..-|...+... ..++|++|||.||++++.|+ .+. ... +..+.
T Consensus 30 ~~~~l~~a~~~~--~~v~va~SGGkDS~vLL~ll-------~~~---------------~~~-------------~~~i~ 72 (261)
T 2oq2_A 30 PQEIIAWSIVTF--PHLFQTTAFGLTGLVTIDML-------SKL---------------SEK-------------YYMPE 72 (261)
T ss_dssp HHHHHHHHHHHC--SSEEEECCCCHHHHHHHHHH-------HHH---------------TTT-------------SCCCE
T ss_pred HHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHH-------HHh---------------Ccc-------------CCCee
Confidence 344555556655 37999999999999999888 343 210 01256
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCC----cEEEEech
Q 021929 102 TVFMGSENSSQETRMRAKKLADEIGS----WHLDVSID 135 (305)
Q Consensus 102 t~yM~t~nSs~et~~~A~~LA~~iGi----~h~~i~Id 135 (305)
.+++-+..-.++|.+.++++++++|+ +++++..+
T Consensus 73 vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~ 110 (261)
T 2oq2_A 73 LLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPD 110 (261)
T ss_dssp EEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECST
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecC
Confidence 67777766678999999999999999 99888765
No 42
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.97 E-value=0.003 Score=57.87 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCCceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCCCCcchhhhcCCeEEE
Q 021929 23 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYT 102 (305)
Q Consensus 23 a~~L~DyLrrsg~~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t 102 (305)
..-|...++..| ..++|++| |.||++++.|+ .+. +.+ +..
T Consensus 43 ~~~l~~a~~~~g-~~i~Va~S-GkDS~vLL~Ll-------~~~---------------~~~----------------i~v 82 (275)
T 2goy_A 43 QDILKAAFEHFG-DELWISFS-GAEDVVLVDMA-------WKL---------------NRN----------------VKV 82 (275)
T ss_dssp HHHHHHHHHHHS-TTEEEECC-SSTTHHHHHHH-------HHH---------------CTT----------------CCE
T ss_pred HHHHHHHHHHcC-CCEEEEee-cHHHHHHHHHH-------HHh---------------CCC----------------ceE
Confidence 344444455544 68999999 99999998888 232 212 456
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCcEEEEechH
Q 021929 103 VFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 136 (305)
Q Consensus 103 ~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~Id~ 136 (305)
+++-+....++|.+.++++++++|+++.++..+.
T Consensus 83 v~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 116 (275)
T 2goy_A 83 FSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDP 116 (275)
T ss_dssp EEECCSCCCHHHHHHHHHHHHHHTCCCEEECCCH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCCc
Confidence 7777766678999999999999999999887764
No 43
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=95.46 E-value=0.042 Score=51.87 Aligned_cols=98 Identities=9% Similarity=0.047 Sum_probs=58.3
Q ss_pred HHhcHHHHHHHHHHHhCC--CceEEeccCchHHHHHHHHHHHhHHHHHHHHhcCchhHHHHHHHhhccCCCC--CCcchh
Q 021929 18 IAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGE--FPTESR 93 (305)
Q Consensus 18 i~~~~a~~L~DyLrrsg~--~g~~LgLSGGiDSs~tA~lv~~mc~~v~~a~~~g~~~v~~~~~~ig~~~~~~--~p~~~~ 93 (305)
|...+...|..-+.+-+. ..++|+.|||.||+|++.|+ .+++... ++.+...-..+. .+ .|.
T Consensus 39 ir~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~-------~kal~~~---~~~~~~~~~~~~-~~~~~p~--- 104 (308)
T 3fwk_A 39 INTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLY-------LSCLWEY---YIVKLSQSQFDG-KFHRFPL--- 104 (308)
T ss_dssp HHHHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHH-------HHHHHHH---HTCCE------------------
T ss_pred HHHHHHHHHHHHHHHcccccCCEEEEecCChhHHHHHHHH-------HHHhhhh---cccccccccccc-cccccCC---
Confidence 444444455555555554 57999999999999999988 3442100 000000000000 00 000
Q ss_pred hhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 021929 94 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 133 (305)
Q Consensus 94 e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~ 133 (305)
..+-.+|.-|...-+||.+-..++++++|+...++.
T Consensus 105 ----~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v~~ 140 (308)
T 3fwk_A 105 ----TKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESD 140 (308)
T ss_dssp -------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEECC
T ss_pred ----CCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 126678888888889999999999999999877654
No 44
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=61.04 E-value=7.7 Score=34.52 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=31.3
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHh---CCCceEEeccCch
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRS---GASGFLLPLSGGA 46 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrs---g~~g~~LgLSGGi 46 (305)
++.+.+.+++....|.+|.+.++.. ...+++|+||||-
T Consensus 3 ~~~~~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgGs 43 (266)
T 1fs5_A 3 LIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGG 43 (266)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSS
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCCC
Confidence 4566778899999999999999974 3357999999994
No 45
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=55.70 E-value=9.7 Score=34.29 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=33.2
Q ss_pred CcccccCCcHHHHHhcHHHHHHHHHHHhCC--CceEEeccCc
Q 021929 6 PLKITYHSPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGG 45 (305)
Q Consensus 6 ~~~~~~~~peeEi~~~~a~~L~DyLrrsg~--~g~~LgLSGG 45 (305)
..+++.+.+.++++...|..|.+.++..-. ..+.|+||||
T Consensus 5 ~~~~~~~~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgG 46 (267)
T 3css_A 5 APTVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGG 46 (267)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 456777888999999999999999987443 3689999999
No 46
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=54.80 E-value=9.5 Score=33.24 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=29.5
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCc
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 45 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGG 45 (305)
++.+.+.+++....|.+|.+.++.. .++.|+||||
T Consensus 3 ~~~~~~~~~l~~~aA~~l~~~i~~~--~~~~i~lsgG 37 (242)
T 2bkx_A 3 VMECQTYEELSQIAARITADTIKEK--PDAVLGLATG 37 (242)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHC--TTCEEEECCS
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHC--CCeEEEECCC
Confidence 4566778899999999999999872 4689999999
No 47
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=51.03 E-value=12 Score=34.34 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=33.1
Q ss_pred cccccCCcHHHHHhcHHHHHHHHHHHhCC--C-ceEEeccCch
Q 021929 7 LKITYHSPEEEIAFGPGCWLWDYLRRSGA--S-GFLLPLSGGA 46 (305)
Q Consensus 7 ~~~~~~~peeEi~~~~a~~L~DyLrrsg~--~-g~~LgLSGGi 46 (305)
++++.+.+.++++...|..+.+.++.... + .+.|+||||-
T Consensus 22 M~i~i~~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGs 64 (289)
T 3hn6_A 22 MRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGS 64 (289)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSS
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCc
Confidence 45677788999999999999999998653 2 3899999993
No 48
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=50.21 E-value=8.5 Score=33.94 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=28.9
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCc
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 45 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGG 45 (305)
++.+.+.+++....|..|.+.++. ...+.|+||||
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~--~~~~~l~lsgG 38 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQ--GQPVHISLSGG 38 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT--SSCEEEEECCS
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHh--CCCEEEEECCC
Confidence 455677888999999999888877 34689999999
No 49
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=50.18 E-value=13 Score=33.79 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=30.5
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhC--CCc-eEEeccCc
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSG--ASG-FLLPLSGG 45 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg--~~g-~~LgLSGG 45 (305)
++.+.+.++++...|.+|.+.++... .++ ++|+||||
T Consensus 3 i~i~~~~~~la~~aA~~i~~~i~~~~~~~~~~~~lglsgG 42 (289)
T 1ne7_A 3 LIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTG 42 (289)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCS
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEcCC
Confidence 45567788999999999999999753 235 89999999
No 50
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=45.78 E-value=12 Score=33.21 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=29.4
Q ss_pred cccccCCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCch
Q 021929 7 LKITYHSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGA 46 (305)
Q Consensus 7 ~~~~~~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGGi 46 (305)
++++.+.+.++++...|..+.+.+++.- ...+.|+||||-
T Consensus 6 m~~~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgGs 47 (233)
T 3nwp_A 6 TVFKSFDTPSALEQQLASKIASQLQEAVDARGKASLVVSGGS 47 (233)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSS
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4567778889988888888766655432 246899999993
No 51
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=44.38 E-value=12 Score=34.00 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=30.8
Q ss_pred cccccCCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCc
Q 021929 7 LKITYHSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGG 45 (305)
Q Consensus 7 ~~~~~~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGG 45 (305)
..++.+.+.++++...|..+.+.+++.- ...+.|+||||
T Consensus 24 m~i~v~~~~~~l~~~~A~~i~~~i~~ai~~~~~~~l~LsgG 64 (268)
T 3ico_A 24 SSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGG 64 (268)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cceEecCCcchhhhhhcchhhhHhHHHHHhcCceEEEEecC
Confidence 4566777889999999988888887632 24699999999
No 52
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=43.85 E-value=18 Score=32.55 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=30.5
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCc
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGG 45 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGG 45 (305)
++.+.+.++++...|..+.+.+++.- ...+.|+||||
T Consensus 7 i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgG 45 (266)
T 3eb9_A 7 ISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGG 45 (266)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCS
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 56677889999999999998887653 34699999999
No 53
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=41.77 E-value=15 Score=31.86 Aligned_cols=34 Identities=15% Similarity=-0.106 Sum_probs=28.1
Q ss_pred cccCCcHHHHHhcHHHHHHHHHHHhCCCceEEeccCc
Q 021929 9 ITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 45 (305)
Q Consensus 9 ~~~~~peeEi~~~~a~~L~DyLrrsg~~g~~LgLSGG 45 (305)
++.+.+.+++....|.+|.+.++.. +-.|+||||
T Consensus 4 ~~~~~~~~~l~~~aA~~l~~~i~~~---~~~i~ls~G 37 (234)
T 2ri0_A 4 TIKVKNKTEGSKVAFRMLEEEITFG---AKTLGLATG 37 (234)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTT---CCEEEECCS
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC---CCEEEEcCC
Confidence 4566778899999999999999863 339999999
No 54
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=41.50 E-value=13 Score=32.80 Aligned_cols=38 Identities=24% Similarity=0.129 Sum_probs=27.4
Q ss_pred ccccCCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCc
Q 021929 8 KITYHSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGG 45 (305)
Q Consensus 8 ~~~~~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGG 45 (305)
+++.+.+.++++...|..+-+.+++.- ...+.|+||||
T Consensus 4 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgG 43 (232)
T 3lhi_A 4 VWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGG 43 (232)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 455667788888888877766555431 24699999999
No 55
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=36.51 E-value=27 Score=31.09 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=29.5
Q ss_pred ccccCCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCc
Q 021929 8 KITYHSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGG 45 (305)
Q Consensus 8 ~~~~~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGG 45 (305)
+++.+.+.++++...|..+.+.+++.- ...+.|+||||
T Consensus 9 ~i~i~~~~~~l~~~~A~~i~~~i~~~~~~~~~~~l~LsgG 48 (248)
T 3oc6_A 9 VIERHADTAALVAAAGDRLVDAISSAIGERGQATIVLTGG 48 (248)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 456677888998888888888877632 24699999999
No 56
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=35.50 E-value=19 Score=32.20 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=29.7
Q ss_pred ccccCCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCc
Q 021929 8 KITYHSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGG 45 (305)
Q Consensus 8 ~~~~~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGG 45 (305)
.++.+.+.++++...|..+.+.+++.- ...+.|+||||
T Consensus 9 ~i~i~~~~~~l~~~~A~~i~~~i~~a~~~~~~~~l~LsgG 48 (251)
T 3tx2_A 9 IIEKYADTDALVTAAGDRLASAITGALAERGKAMIVLTGG 48 (251)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 456677889999988888888877632 24699999999
No 57
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=33.85 E-value=14 Score=32.72 Aligned_cols=35 Identities=11% Similarity=-0.044 Sum_probs=25.5
Q ss_pred cCCcHHHHHhcHHHHHHHHHHHhC--CCceEEeccCc
Q 021929 11 YHSPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGG 45 (305)
Q Consensus 11 ~~~peeEi~~~~a~~L~DyLrrsg--~~g~~LgLSGG 45 (305)
.+.+.++++...|..|.+.++..- ...+.|+||||
T Consensus 18 ~~~~~~~l~~~aA~~i~~~i~~~~~~~~~~~l~LsgG 54 (232)
T 1vl1_A 18 IYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGG 54 (232)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCS
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 344566788888888888777622 24699999999
No 58
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=31.21 E-value=26 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=26.3
Q ss_pred cCCcHHHHHhcHHHHHHHHHHHh--CCCceEEeccCc
Q 021929 11 YHSPEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 45 (305)
Q Consensus 11 ~~~peeEi~~~~a~~L~DyLrrs--g~~g~~LgLSGG 45 (305)
.+.+.++++...|..+-+.+++. ....+.|+||||
T Consensus 6 i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgG 42 (226)
T 3lwd_A 6 TQEGRQRLAERLADTVAQALEADLAKRERALLVVSGG 42 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEECCS
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 34457788888888887777664 234699999999
No 59
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=28.47 E-value=94 Score=24.90 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHH---HHHHHHHHHHHhCCcEEEEech
Q 021929 101 YTVFMGSENSSQE---TRMRAKKLADEIGSWHLDVSID 135 (305)
Q Consensus 101 ~t~yM~t~nSs~e---t~~~A~~LA~~iGi~h~~i~Id 135 (305)
+.+|..+....-+ .-.+|+.+-+..|+.|.++||+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~ 39 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIA 39 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECT
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECC
Confidence 4566654333322 3468999999999999999997
No 60
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=28.06 E-value=1.6e+02 Score=21.18 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCcEEEEechHHHHHHHHHhhhhcC----CCCcccccccccCCChhhhhh
Q 021929 116 MRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG----KRPRYKLDEVDMGMTYEELSV 171 (305)
Q Consensus 116 ~~A~~LA~~iGi~h~~i~Id~~v~a~~~~f~~~~g----~~prfrtDE~dmGmtY~eLd~ 171 (305)
.+|+.+-+..|+++..+||+.-- .....+...+| ..|..--|..-+| .|+++..
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~-~~~~~l~~~~g~~~~~vP~ifi~g~~ig-G~d~l~~ 79 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDN-ALRDEMRTLAGNPKATPPQIVNGNHYCG-DYELFVE 79 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCH-HHHHHHHHHTTCTTCCSCEEEETTEEEE-EHHHHHH
T ss_pred HHHHHHHHHCCCceEEEECCCCH-HHHHHHHHHhCCCCCCCCEEEECCEEEe-CHHHHHH
Confidence 78999999999999999997421 22333333444 3465443333332 4554443
No 61
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=26.97 E-value=45 Score=31.11 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=30.1
Q ss_pred ccccCCcHHHHHhcHHHHHHHHHHHh---CC-CceEEeccCc
Q 021929 8 KITYHSPEEEIAFGPGCWLWDYLRRS---GA-SGFLLPLSGG 45 (305)
Q Consensus 8 ~~~~~~peeEi~~~~a~~L~DyLrrs---g~-~g~~LgLSGG 45 (305)
.+....+.++++...|..+.+.++.. .. ..+.|+||||
T Consensus 28 kiii~~d~~~ls~~aA~~i~~~I~~~~~~~~~~~~~l~LsgG 69 (312)
T 3e15_A 28 KYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGG 69 (312)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEECCS
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHhhhhhhhCCCEEEEEeCC
Confidence 35566778999999999999998763 22 4599999999
No 62
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=22.37 E-value=1.4e+02 Score=25.78 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHH-hCCcEEEEechHHH
Q 021929 110 SSQETRMRAKKLADE-IGSWHLDVSIDTVV 138 (305)
Q Consensus 110 Ss~et~~~A~~LA~~-iGi~h~~i~Id~~v 138 (305)
.+.+..+.|.+.-++ .|+...+-++.++|
T Consensus 181 ~~~~~h~~aL~~m~~~~G~~i~ts~~~~~~ 210 (211)
T 3o94_A 181 IWPENHQFALGHFKNTLGAKLVDENLNELF 210 (211)
T ss_dssp SCHHHHHHHHHHHHHTSCCEEECTTSCBC-
T ss_pred CCHHHHHHHHHHHHHHCCcEEechhhHhhc
Confidence 356777777776666 89988777765544
No 63
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=22.18 E-value=3.1e+02 Score=25.25 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=35.9
Q ss_pred hhHHHHHHHhhccCCCCCCcchhhhcCCeEEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEEe
Q 021929 71 EQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 133 (305)
Q Consensus 71 ~~v~~~~~~ig~~~~~~~p~~~~e~~~~~l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i~ 133 (305)
+.|.+|++.+. +.|+..+.-+.+.+-.-+.+....|-++|.+.|+.+.--+
T Consensus 158 ~~v~~eI~~V~------------~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS 208 (288)
T 3oa3_A 158 TDVFQDIRAVR------------LAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTS 208 (288)
T ss_dssp HHHHHHHHHHH------------HHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHHHH------------HHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcC
Confidence 36777777654 2344445666666545567788899999999999997665
No 64
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=21.13 E-value=75 Score=27.59 Aligned_cols=32 Identities=31% Similarity=0.202 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 021929 100 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 132 (305)
Q Consensus 100 l~t~yM~t~nSs~et~~~A~~LA~~iGi~h~~i 132 (305)
+.++.||+ .|.-.+.+.|.++.+++|++|..-
T Consensus 24 ~V~IimGS-~SD~~v~~~a~~~L~~~gI~~e~~ 55 (181)
T 4b4k_A 24 LVGVIMGS-TSDWETMKYACDILDELNIPYEKK 55 (181)
T ss_dssp SEEEEESS-GGGHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECC-HhHHHHHHHHHHHHHHcCCCeeEE
Confidence 68999997 466778889999999999997443
No 65
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.16 E-value=58 Score=26.38 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=15.5
Q ss_pred CcccccccccCCCCccchhhHHHHHHHhhcCC
Q 021929 238 NRFDLRQFLYNARWPYQFRKIDELVKELDGEK 269 (305)
Q Consensus 238 nr~d~r~fly~~~w~~~f~~id~~~~~~~~~~ 269 (305)
+++|+.|. |.|++.+++.-+.+.
T Consensus 95 ~~ydL~pL---------~ekL~~~~~~~~~~~ 117 (135)
T 2v79_A 95 EKYSLQPL---------WGKLYEYIQLAQNQT 117 (135)
T ss_dssp EEEECHHH---------HHHHHHHHHHHHC--
T ss_pred EEeeHHHH---------HHHHHHHHHHHHHHH
Confidence 57777776 789999887654433
Done!