RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021929
(305 letters)
>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing).
Length = 700
Score = 330 bits (848), Expect = e-108
Identities = 136/171 (79%), Positives = 145/171 (84%), Gaps = 3/171 (1%)
Query: 1 MSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQ 60
+ S PLKI YHSPEEEIA GP CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG MCQ
Sbjct: 314 LVPSSPLKIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQ 373
Query: 61 LVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKK 120
LVVK I GDEQVKADA RIG YA+GE PT+S+EFAKRIFYTV+MGSENSS+ETR RAK+
Sbjct: 374 LVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQ 433
Query: 121 LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSV 171
LADEIGS HLDV ID VVSA LSLFQTLTGKRPRYK VD G E L++
Sbjct: 434 LADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYK---VDGGSNAENLAL 481
Score = 270 bits (691), Expect = 2e-85
Identities = 98/115 (85%), Positives = 103/115 (89%)
Query: 156 KLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 215
+ DE DMGMTYEEL VYGRLRKIF CGPVSMFKNLC+ W RL+PSEVA KVK FFKYYS
Sbjct: 584 QTDEEDMGMTYEELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFKYYS 643
Query: 216 INRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKV 270
INRHKMT LTPSYHAESYSP+DNRFDLRQFLYN RWPYQFRKIDELV+ELDGE V
Sbjct: 644 INRHKMTTLTPSYHAESYSPDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGETV 698
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which
catalyzes the final step in de novo nicotinamide adenine
dinucleotide (NAD+) biosynthesis, an amide transfer from
either ammonia or glutamine to nicotinic acid adenine
dinucleotide (NaAD). The conversion of NaAD to NAD+
occurs via an NAD-adenylate intermediate and requires
ATP and Mg2+. The intemediate is subsequently cleaved
into NAD+ and AMP. In many prokaryotes, such as E. coli
, NAD synthetase consists of a single domain and is
strictly ammonia dependent. In contrast, eukaryotes and
other prokaryotes have an additional N-terminal
amidohydrolase domain that prefer glutamine,
Interestingly, NAD+ synthases in these prokaryotes, can
also utilize ammonia as an amide source .
Length = 248
Score = 106 bits (268), Expect = 1e-27
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 36/139 (25%)
Query: 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQ 72
EEI +L DYLR+SG G +L LSGG DS+ VAA+ G E
Sbjct: 1 EDLEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRAL---------GREN 51
Query: 73 VKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 132
V +FM S SS+ETR AK+LA+ +G H+++
Sbjct: 52 V---------------------------LALFMPSRYSSEETREDAKELAEALGIEHVNI 84
Query: 133 SIDTVVSAFLSLFQTLTGK 151
ID V AFL+L G
Sbjct: 85 DIDPAVEAFLALLGESGGS 103
Score = 64.9 bits (159), Expect = 3e-12
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DE ++GM YEEL + LR GP L P + E VK F+ Y N
Sbjct: 196 DEDELGMPYEELDQFLYLRLEGGLGP-----------EEILAPGIIEEVVKRVFRLYKKN 244
Query: 218 RHKM 221
HK
Sbjct: 245 EHKR 248
>gnl|CDD|217093 pfam02540, NAD_synthase, NAD synthase. NAD synthase (EC:6.3.5.1)
is involved in the de novo synthesis of NAD and is
induced by stress factors such as heat shock and glucose
limitation.
Length = 242
Score = 56.2 bits (136), Expect = 3e-09
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 36/122 (29%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 84
+L DY+++SGA G +L LSGG DS A+V + + G E V A
Sbjct: 8 FLRDYVQKSGAKGVVLGLSGGIDS----AVVAYLAVKAL-----GKENVLA--------- 49
Query: 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 144
+ M S NSS+E A LA+ +G + + I +V AF L
Sbjct: 50 ------------------LIMPSINSSEEDVQDALALAENLGINYKTIDIKPIVRAFSQL 91
Query: 145 FQ 146
FQ
Sbjct: 92 FQ 93
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 158 DEVDMGMTYEELSVY-GRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSI 216
DE ++G+ Y+EL L ++ + L P+EV E+V
Sbjct: 187 DEDELGIPYDELDQILKGLEELKQSEEEIIDLGL---------PAEVVERV---ENLIQK 234
Query: 217 NRHK 220
+ HK
Sbjct: 235 SEHK 238
>gnl|CDD|233019 TIGR00552, nadE, NAD+ synthetase. NAD+ synthetase is a nearly
ubiquitous enzyme for the final step in the biosynthesis
of the essensial cofactor NAD. The member of this family
from Bacillus subtilis is a strictly NH(3)-dependent
NAD(+) synthetase of 272 amino acids. Proteins
consisting only of the domain modeled here may be named
as NH3-dependent NAD+ synthetase. Amidotransferase
activity may reside in a separate protein, or not be
present. Some other members of the family, such as from
Mycobacterium tuberculosis, are considerably longer,
contain an apparent amidotransferase domain, and show
glutamine-dependent as well as NH(3)-dependent activity
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 250
Score = 46.6 bits (111), Expect = 5e-06
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 36/129 (27%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 84
+L Y+++SGA G +L LSGG DS+ VAA+ V+A
Sbjct: 12 FLRGYVQKSGAKGVVLGLSGGIDSAVVAAL-----------------CVEA--------- 45
Query: 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 144
++ + S + ++ A LA+ +G + ++ I + ++F +
Sbjct: 46 ----------LGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQAQ 95
Query: 145 FQTLTGKRP 153
+T
Sbjct: 96 TETGDELSD 104
Score = 30.4 bits (69), Expect = 0.99
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 20/66 (30%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DE ++G+TY+EL Y + + V E VK +
Sbjct: 194 DETELGITYDELDDYLKGIEELS--------------------QTVQEVVKRIESLVQKS 233
Query: 218 RHKMTV 223
HK +
Sbjct: 234 EHKRRL 239
>gnl|CDD|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism].
Length = 268
Score = 45.7 bits (109), Expect = 9e-06
Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 32/133 (24%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 84
+L DYL+++G G +L LSGG DS A+V + + +
Sbjct: 15 FLRDYLKKAGFKGVVLGLSGGIDS----ALVLALAVRALGK------------------- 51
Query: 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 144
+K V + + Q A+ LA+ +G + +++I V AFL
Sbjct: 52 ---------GDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKK 102
Query: 145 FQTLTGKRPRYKL 157
L L
Sbjct: 103 LLKLFLGIYLEDL 115
Score = 33.4 bits (77), Expect = 0.11
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 19/64 (29%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DE ++GM YEEL L + + E+ +K++ Y +
Sbjct: 206 DEAELGMPYEELDDI--LYGLLE--------------NGQEISEELVKKIERL---YKKS 246
Query: 218 RHKM 221
HK
Sbjct: 247 EHKR 250
>gnl|CDD|234831 PRK00768, nadE, NAD synthetase; Reviewed.
Length = 268
Score = 45.1 bits (108), Expect = 2e-05
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 14 PEEEI----AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--A 67
PEEEI F L DYL++SG +L +SGG DS+ + G + QL V+E+
Sbjct: 18 PEEEIRRRVDF-----LKDYLKKSGLKSLVLGISGGQDST----LAGRLAQLAVEELRAE 68
Query: 68 NGDEQVKADAIR 79
GD+ + A+R
Sbjct: 69 TGDDDYQFIAVR 80
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional.
Length = 540
Score = 42.5 bits (101), Expect = 2e-04
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 36/116 (31%)
Query: 28 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGE 87
DY+R++G G +L LSGG DS+ VAAI V A G E+V+A
Sbjct: 273 DYVRKNGFPGVVLGLSGGIDSALVAAI-------AVD--ALGAERVRA------------ 311
Query: 88 FPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLS 143
V M S +S+E+ A LA +G + + I+ AF +
Sbjct: 312 ---------------VMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEA 352
>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional.
Length = 265
Score = 41.7 bits (99), Expect = 2e-04
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 36/125 (28%)
Query: 28 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGE 87
+ + ++GA G +L LSGG DS+ VA L VK A G E V A
Sbjct: 23 EEVEKAGAKGVVLGLSGGIDSAVVAY-------LAVK--ALGKENVLA------------ 61
Query: 88 FPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 147
+ M S S E A+ +A+++G + + I +V AF S
Sbjct: 62 ---------------LLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPD 106
Query: 148 LTGKR 152
R
Sbjct: 107 ADRLR 111
>gnl|CDD|185554 PTZ00323, PTZ00323, NAD+ synthase; Provisional.
Length = 294
Score = 35.5 bits (82), Expect = 0.023
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 19 AFGPGCW-------LWDYLRRSGASGFLLPLSGGADSSSVAAI 54
AF P W L +Y+RR G G + +SGG DS+ V A+
Sbjct: 23 AFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLAL 65
>gnl|CDD|107331 cd06336, PBP1_ABC_ligand_binding_like_3, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that
are predicted to be involved in transport of amino
acids, peptides, or inorganic ions. This group
includes the type I periplasmic ligand-binding domain
of uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters (HAAT), such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been
determined experimentally.
Length = 347
Score = 34.2 bits (79), Expect = 0.065
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 37 GFLLPLSGGADSSSVAAIVGCMCQLVVKEI-ANGDEQVKADA--IRIGRYANGEFPTESR 93
GF PLSG A + + + G QL +EI A G +V + I Y + P E+
Sbjct: 3 GFSGPLSGPAAAWGLPGLRG--VQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAA 60
Query: 94 EFAKRI 99
A+R+
Sbjct: 61 ANARRL 66
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 32.7 bits (75), Expect = 0.22
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 37/102 (36%)
Query: 42 LSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 101
LSGG DSS VAAI + + +
Sbjct: 259 LSGGLDSSLVAAI--------------ARREAPRGPVHT--------------------F 284
Query: 102 TVFMGSENSSQETRMRAKKLADEIGSWH--LDVSIDTVVSAF 141
++ E+ A+K+AD +G+ H + S++ + A
Sbjct: 285 SIGFEGSPDFDESPY-ARKVADHLGTEHHEVLFSVEEGLDAL 325
>gnl|CDD|238949 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine
Synthase B. This domain is always found associated
n-terminal amidotransferase domain. Family members that
contain this domain catalyse the conversion of
aspartate to asparagine. Asparagine synthetase B
catalyzes the assembly of asparagine from aspartate,
Mg(2+)ATP, and glutamine. The three-dimensional
architecture of the N-terminal domain of asparagine
synthetase B is similar to that observed for glutamine
phosphoribosylpyrophosphate amidotransferase while the
molecular motif of the C-domain is reminiscent to that
observed for GMP synthetase .
Length = 269
Score = 31.2 bits (71), Expect = 0.49
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 40 LPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRI 99
+ LSGG DSS VAA+ E VK +I G + E +R A+ +
Sbjct: 20 VLLSGGLDSSLVAALAA----------RLLPEPVKTFSIGFGFEGSDEREY-ARRVAEHL 68
>gnl|CDD|217642 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of
regulatory proteins has ADP-dependent kinase and
inorganic phosphate-dependent pyrophosphorylase
activity.
Length = 255
Score = 30.9 bits (71), Expect = 0.76
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 99 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK 156
+FYT+ E R ++ A+ +G +D+ + L ++ G +P +
Sbjct: 56 VFYTLV------DPELREILEEFAEALGIPCVDL-----LGPLLEPLESELGIKPSPE 102
>gnl|CDD|107192 PHA02508, PHA02508, putative minor coat protein; Provisional.
Length = 93
Score = 29.1 bits (65), Expect = 0.78
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 132 VSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYG 173
V +D V A L + + P + + +E LS+
Sbjct: 32 VGLDAAVDAALGAAKPMLAGLPAVAAAILAIAGVFEALSIIA 73
>gnl|CDD|224315 COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 314
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 45 GADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIF 100
G D+ ++AAI G + G+E + + + + + E A +
Sbjct: 266 GGDTDTIAAITGAIAG-----AYYGEEAIPQQLL---AELDEDLIGDLAELAYALA 313
>gnl|CDD|235419 PRK05339, PRK05339, PEP synthetase regulatory protein; Provisional.
Length = 269
Score = 30.1 bits (69), Expect = 1.3
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 99 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK 156
+FYT+ E R ++ E G +D+ + ++ + G +P +
Sbjct: 62 VFYTLV------DPELREILEERCAEFGIPCIDI-----LGPLIAPLEQELGLKPTPE 108
>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Sorbitol dehydrogenase is tetrameric and has a single
catalytic zinc per subunit. Aldose reductase catalyzes
the NADP(H)-dependent conversion of glucose to sorbital,
and SDH uses NAD(H) in the conversion of sorbitol to
fructose. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 343
Score = 29.8 bits (68), Expect = 1.9
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 55 VGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 114
+G + V K A G +V I R EFAK + T + +++T
Sbjct: 174 IGLLTAAVAK--AFGATKVVVTDIDPSR----------LEFAKELGATHTVNV--RTEDT 219
Query: 115 RMRAKKLADEIGSWHLDVSIDT 136
A+K+A+ +G DV I+
Sbjct: 220 PESAEKIAELLGGKGPDVVIEC 241
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 29.3 bits (66), Expect = 3.0
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 38 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVK 74
F L LSGG DSS VAAI V K I NG+ +
Sbjct: 240 FGLFLSGGLDSSIVAAI-------VAKLIKNGEIDLS 269
>gnl|CDD|183745 PRK12787, fliX, flagellar assembly regulator FliX; Reviewed.
Length = 138
Score = 28.0 bits (63), Expect = 3.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 31 RRSGASGFLLPLSGGADSSSVAAIVG 56
RR+G+SGF LP + + A+
Sbjct: 19 RRTGSSGFSLPDESASGAGEARAVSA 44
>gnl|CDD|216090 pfam00733, Asn_synthase, Asparagine synthase. This family is
always found associated with pfam00310. Members of this
family catalyze the conversion of aspartate to
asparagine.
Length = 195
Score = 28.4 bits (64), Expect = 4.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 42 LSGGADSSSVAAI 54
LSGG DSS +AA+
Sbjct: 24 LSGGLDSSLIAAL 36
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 28.3 bits (63), Expect = 5.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 75 ADAIRIGRYANGEFPTESREFAKRIFYTVFMG 106
A A IG Y FP A +FY VF+G
Sbjct: 103 AIACFIGAYCESLFPVGPGWLAALVFYIVFIG 134
>gnl|CDD|224348 COG1431, COG1431, Argonaute homolog, implicated in RNA metabolism
[Translation, ribosomal structure and biogenesis].
Length = 685
Score = 28.3 bits (63), Expect = 5.5
Identities = 7/47 (14%), Positives = 20/47 (42%)
Query: 231 ESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESSD 277
++ + D + + + P + +++KE+D E++ E
Sbjct: 370 KNSNGIDWKVEGLTLHVAGKRPKMKDDLTKIIKEIDVEELKKQEMYK 416
>gnl|CDD|191924 pfam07999, RHSP, Retrotransposon hot spot protein. Members of this
family are retrotransposon hot spot proteins. They are
associated with polymorphic subtelomeric regions in
Trypanosoma. These proteins contain a P-loop motif.
Length = 439
Score = 28.0 bits (62), Expect = 7.6
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 242 LRQFLYNARWPYQFRKIDELVKEL 265
LR Y + Y KI E V E
Sbjct: 304 LRYIFYEGSYKYWIAKIHEAVDET 327
>gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed.
Length = 326
Score = 27.6 bits (62), Expect = 7.6
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 39/112 (34%)
Query: 30 LRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFP 89
LRR G +L LSGG DSS AA L V+ + G E+V
Sbjct: 31 LRRRGV---VLGLSGGIDSSVTAA-------LCVRAL--GKERV---------------- 62
Query: 90 TESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAF 141
Y + M +SS E+ +++A+ +G ++ I + A
Sbjct: 63 -----------YGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEAL 103
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 28.0 bits (63), Expect = 7.9
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 37 GFLLPLSGGADSSSVAAI 54
G LL SGG DSS ++AI
Sbjct: 231 GVLL--SGGLDSSLISAI 246
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 27.8 bits (62), Expect = 8.1
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 38/89 (42%)
Query: 42 LSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 101
LSGG DSS +AAI E +
Sbjct: 237 LSGGLDSSLIAAIA-------------------------------------AEELGKEGK 259
Query: 102 TVF-MGSENSSQETRMRAKKLADEIGSWH 129
T F +G E+S A+ +A +G+ H
Sbjct: 260 TTFTVGFEDSDSPDAKYARAVAKFLGTPH 288
>gnl|CDD|218690 pfam05683, Fumerase_C, Fumarase C-terminus. This family consists
of the C terminal region of several bacterial fumarate
hydratase proteins (FumA and FumB). Fumarase, or
fumarate hydratase (EC 4.2.1.2), is a component of the
citric acid cycle. In facultative anaerobes such as
Escherichia coli, fumarase also engages in the reductive
pathway from oxaloacetate to succinate during anaerobic
growth.
Length = 205
Score = 27.5 bits (62), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 160 VDMGMTYEELSVYGRLRKIFHCGPV 184
V+M E L V + R I++ GPV
Sbjct: 66 VEMLDRGEPLPVDLKGRFIYYVGPV 90
>gnl|CDD|233626 TIGR01897, cas_MJ1666, CRISPR-associated protein, MJ1666 family.
CRISPR is a term for Clustered, Regularly Interspaced
Short Palidromic Repeats. A number of protein families
appear only in association with these repeats and are
designated Cas (CRISPR-Associated) proteins. This model
describes a Cas protein about 400 residues in length,
found mostly in the Archaea but also in Aquifex [Mobile
and extrachromosomal element functions, Other].
Length = 410
Score = 27.4 bits (61), Expect = 9.6
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 201 SEVAEKVKHFFK--YYSIN--RHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFR 256
E K +I K L E Y F+ R FL +A + Y
Sbjct: 330 EEYISVYIEIIKNELDNIKNRSKKAEELALIKATEIYKVSGEGFEKRNFLAHAGFEYN-- 387
Query: 257 KIDELVKELDGEKVPF 272
+ E+ KE D V +
Sbjct: 388 -VVEVKKEKDKIYVRY 402
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,996,328
Number of extensions: 1539987
Number of successful extensions: 1588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1585
Number of HSP's successfully gapped: 45
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)