RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021929
(305 letters)
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 140 bits (354), Expect = 1e-37
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 11 YHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGD 70
E E L+DY+R+S + GF+L LSGGADSS+ A +V M + +KE+
Sbjct: 279 DLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTA 338
Query: 71 EQVKADAIRIG---RYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS 127
K++ + + F ++++ T + + NS ET AK LA+ IG+
Sbjct: 339 FLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGA 398
Query: 128 WHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYE 167
+ S+D + + + + + + ++ D++ T +
Sbjct: 399 TFYNWSVDEEIEQYKATIENVIERPLTWEKDDI----TLQ 434
Score = 116 bits (292), Expect = 3e-29
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 19/153 (12%)
Query: 115 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRP--RYKLDEVDMGMTYEELSVY 172
R K L + +A L RP + DE D+ M Y+ L+
Sbjct: 496 RWAEKNRNQHG----LHIVNKLAPTAEL---------RPSEYTQTDERDL-MPYDVLARI 541
Query: 173 GRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES 232
R PV ++ L T +E VK FF+ +SIN+ K L PS+H +
Sbjct: 542 ERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFHMDD 599
Query: 233 YSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 265
++ + + L + + + +D+
Sbjct: 600 FNIDPRSWYRFPILSSG-FAKELNDLDQEGHHH 631
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 112 bits (283), Expect = 4e-28
Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 39/168 (23%)
Query: 9 ITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAN 68
E L LR ++ +SGG DS+ + + ++
Sbjct: 335 QRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSD 394
Query: 69 GDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSW 128
+ + + T+ A KLA +G
Sbjct: 395 -------------------------------ILAFALPGFATGEHTKNNAIKLARALGVT 423
Query: 129 HLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLR 176
++ I L Y + E +T+E +V LR
Sbjct: 424 FSEIDIGDTARLMLHTIG------HPYSVGEKVYDVTFE--NVQAGLR 463
Score = 100 bits (251), Expect = 7e-24
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 40/160 (25%)
Query: 130 LDVSIDTVVSAFLSLFQTLTGKRPRYK----LDEVDMG-MTYEELSVYGRLRKIFHCGPV 184
L +DT ++ L P + E +G ++ S++ LR F P
Sbjct: 535 LQSVLDTEITPEL---------IPTGEEELQSSEAKVGPFALQDFSLFQVLRYGF--RPS 583
Query: 185 SMFKNLCYRWG----------------ARLTPSEVAEK----VKHFFKYYSINRHKMTVL 224
+ + W + +E+ V+ F+ + R +
Sbjct: 584 KIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNG 643
Query: 225 TPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKE 264
H + SP R D R + + +ID V +
Sbjct: 644 PKVSHGGALSP---RGDWRAPSDMSARIW-LDQIDREVPK 679
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 53.3 bits (129), Expect = 2e-08
Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 37/127 (29%)
Query: 24 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRY 83
++ + ++ S + G +L LSGG DS+ VA + A+
Sbjct: 15 DFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------------------KRAL----- 50
Query: 84 ANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLS 143
E + + + M ++ S++ A +L ++ + + I +++ AF+
Sbjct: 51 --KE----------NV-FALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIK 97
Query: 144 LFQTLTG 150
+ T
Sbjct: 98 QSENTTL 104
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 52.9 bits (128), Expect = 2e-08
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 38/129 (29%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 84
WL D A GF++ LSGG DS A+ +
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDS----AVAASLAVK----------------------- 51
Query: 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 144
+ + S+N+ + A +L + + H +SI AFL+
Sbjct: 52 -----------TGLPTTALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLAS 100
Query: 145 FQTLTGKRP 153
Q+ T +
Sbjct: 101 TQSFTNLQN 109
Score = 31.0 bits (71), Expect = 0.34
Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 25/72 (34%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DE +MG+TY+E+ + +++ ++ E++ +++ +
Sbjct: 202 DEDEMGVTYQEIDDFLDGKQV---------------------SAKALERIN---FWHNRS 237
Query: 218 RHKMTV-LTPSY 228
HK + LTP++
Sbjct: 238 HHKRKLALTPNF 249
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 49.5 bits (119), Expect = 3e-07
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 37/128 (28%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 84
+L +++ G + LSGG DS+ V +
Sbjct: 15 FLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------------------QKV------- 48
Query: 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 144
F + + + M S S E + A L ++ + + SI + F S
Sbjct: 49 ----------FKENA-HALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSH 97
Query: 145 FQTLTGKR 152
F+ + R
Sbjct: 98 FKDASLTR 105
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 49.5 bits (119), Expect = 4e-07
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 36/133 (27%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--ANGDEQVKADAIRIGR 82
+L Y++++GA GF+L +SGG DS + G + QL V+ I GD Q A
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGDAQFIA------- 76
Query: 83 YANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIG-SWHLDVSIDTVVSAF 141
V + E A+ I I + VSAF
Sbjct: 77 --------------------VRLPHGTQQDED--DAQLALKFIKPDKSWKFDIKSTVSAF 114
Query: 142 LSLFQTLTGKRPR 154
+Q TG +
Sbjct: 115 SDQYQQETGDQLT 127
Score = 34.5 bits (80), Expect = 0.033
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 24/64 (37%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DE ++G++Y+E+ Y +++ ++V+E ++ K YS+
Sbjct: 220 DETELGISYDEIDDYLEGKEV---------------------SAKVSEALE---KRYSMT 255
Query: 218 RHKM 221
HK
Sbjct: 256 EHKR 259
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 47.8 bits (114), Expect = 1e-06
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 30/139 (21%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 84
++ DYLR +G +L +SGG DS + G + QL V+ + +
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDS----STAGRLAQLAVERLRASGYDAR---------- 81
Query: 85 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 144
F + + E + LA L V + A L+
Sbjct: 82 ---------------FVAMRLPYGAQHDEADA-RRALAFVRADETLTVDVKPAADAMLAA 125
Query: 145 FQTLTGKRPRYKLDEVDMG 163
+ + +G
Sbjct: 126 LAAGGLAYLDHAQQDFVLG 144
Score = 30.8 bits (70), Expect = 0.42
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 24/64 (37%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DE G+TYE++ + + + VAE V F Y
Sbjct: 232 DEHAYGITYEQIDDFLEGKPM---------------------DDAVAETVLRF---YDAT 267
Query: 218 RHKM 221
RHK
Sbjct: 268 RHKR 271
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 47.7 bits (114), Expect = 2e-06
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 36/119 (30%)
Query: 28 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGE 87
Y+ ++G L+ LSGG DS+ VAAI DA+
Sbjct: 319 AYVAKNGFRSVLIGLSGGIDSALVAAIA-------------------CDALG-------- 351
Query: 88 FPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 146
A+ + Y V M S+ SS ++ A +LA G VSI+ + A+++
Sbjct: 352 --------AQNV-YGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 401
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 2e-06
Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 99/284 (34%)
Query: 39 LLPLSGGADSSSVAAI-VGCMCQLVV----KEIANGDEQVKADAIRIGRYANGEFPTESR 93
LL L ++ + A + C ++++ K++ + I + ++ P E +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 94 E-FAKRIFYTVFMGSENSS--QETR--------MRAKKLADEIGSW----HLDVS-IDTV 137
K ++ +E + A+ + D + +W H++ + T+
Sbjct: 305 SLLLK------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 138 VSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGAR 197
+ + L+ L+ + ++ LSV+ I P L W
Sbjct: 359 IESSLN------------VLEPAEYRKMFDRLSVFPPSAHI----PT---ILLSLIWFD- 398
Query: 198 LTPSEVAEKVKHFFKY-----------YSI------------NR---HKMTV-------- 223
+ S+V V KY SI N H+ V
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 224 -----LTP-----------SYHAESYSPEDNRFDLRQFLYNARW 251
L P +H ++ + R + R+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 46.4 bits (111), Expect = 4e-06
Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 38/131 (29%)
Query: 24 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRY 83
+ +++R G +G ++ +SGG DS++VA + K A G E+V
Sbjct: 11 ERILEFIREKGNNGVVIGISGGVDSATVAYL-------ATK--ALGKEKVLG-------- 53
Query: 84 ANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLS 143
+ M + AK +A+++G + ++I +V +F+
Sbjct: 54 -------------------LIMPY--FENKDVEDAKLVAEKLGIGYKVINIKPIVDSFVE 92
Query: 144 LFQTLTGKRPR 154
+ ++
Sbjct: 93 NLELNLDRKGL 103
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 44.4 bits (105), Expect = 3e-05
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 36/142 (25%)
Query: 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQ 72
S E ++ + DY+ ++G G ++ LSGG DS+ V A+ A G E+
Sbjct: 278 SVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVD---------ALGAER 328
Query: 73 VKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 132
V+A V M S ++ + A +A +G + ++
Sbjct: 329 VRA---------------------------VMMPSRYTAGISTTDAADMARRVGVRYDEI 361
Query: 133 SIDTVVSAFLSLFQTLTGKRPR 154
+I + AF +
Sbjct: 362 AIAPMFDAFRASLAAEFAGLAE 383
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 6e-05
Identities = 69/378 (18%), Positives = 111/378 (29%), Gaps = 129/378 (34%)
Query: 12 HSPEEEIAFGPGC----WL--------WDYLRRSGASGFLLPLSG--------------- 44
+ + E F G WL DYL S PL G
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS---CPLIGVIQLAHYVVTAKLLG 257
Query: 45 ---GADSSSVAAIVGCMCQLVV-KEIANGDE-----QVKADAIR----IGRYANGEFPTE 91
G S + G LV IA D AI IG +P
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 92 SREFAKRIFYTVFMGSENSSQE--TRM------RAKKLADEIGSW--HL----DVSI--- 134
S ++ S +++ + M +++ D + HL V I
Sbjct: 318 SLPP------SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 135 ----DTVVSAF-LSLF---QTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKI---FHCGP 183
+ VVS SL+ TL + LD+ + + +L R + FH
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-H 430
Query: 184 VSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES-----YSPEDN 238
L P ++ + ++ S++A+ Y D
Sbjct: 431 --------L-----LVP--ASDLINKDLVKNNV----------SFNAKDIQIPVYDTFDG 465
Query: 239 RFDLRQFLYNARWPYQFRKIDELVKE-LDGEKVPFSESSDH---------EKMGT-TSD- 286
DLR + R +D +++ + E +++ H +G T
Sbjct: 466 S-DLRVLSGSIS----ERIVDCIIRLPVKWETTTQFKAT-HILDFGPGGASGLGVLTHRN 519
Query: 287 -GGGGMGVIAAGS--GNP 301
G G+ VI AG+ NP
Sbjct: 520 KDGTGVRVIVAGTLDINP 537
Score = 30.8 bits (69), Expect = 0.69
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 48/129 (37%)
Query: 8 KITYHSPEE---------------EIAFGPGCWLWDYLRRSGASGFLLP----------- 41
T+ S + E A ++ L+ G L+P
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKA------AFEDLKSKG----LIPADATFAGHSLG 1765
Query: 42 ----LSGGADS---SSVAAIV---GCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 91
L+ AD S+ +V G Q+ V G AI GR A F E
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS-FSQE 1824
Query: 92 S-REFAKRI 99
+ + +R+
Sbjct: 1825 ALQYVVERV 1833
Score = 28.5 bits (63), Expect = 3.4
Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 58/144 (40%)
Query: 159 EVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKV-----KHFFKY 213
E MGM +L Y S+ A+ V HF
Sbjct: 1628 EQGMGM---DL--YKT--------------------------SKAAQDVWNRADNHFKDT 1656
Query: 214 Y--SI------NRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNA----RWPYQFRKIDEL 261
Y SI N +T+ + +R+ Y+A K +++
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKR---------IRE-NYSAMIFETIVDGKLKTEKI 1706
Query: 262 VKELDGEKVPFSESSDHEKMGTTS 285
KE++ ++ S+ + T
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQ 1730
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid,
center for structural genomics O infectious diseases,
alpha beta; 2.40A {Vibrio cholerae}
Length = 279
Score = 42.8 bits (101), Expect = 7e-05
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKE 65
++ L + +L +SGG DS G + QL V+E
Sbjct: 30 FIKRKLTEARYKSLVLGISGGVDS----TTCGRLAQLAVEE 66
Score = 33.5 bits (77), Expect = 0.059
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 24/65 (36%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DE + +TYE++ + + + P+EV++++ Y
Sbjct: 232 DEAALNLTYEQIDDFLEGKAV---------------------PAEVSQRLVAI---YHAT 267
Query: 218 RHKMT 222
+HK
Sbjct: 268 QHKRQ 272
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 38.1 bits (89), Expect = 0.002
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 31/124 (25%)
Query: 25 WLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRY 83
+L YL+ +L +SGG DS + G +CQ+ + E+
Sbjct: 29 FLKSYLQTYPFIKSLVLGISGGQDS----TLAGKLCQMAINELRLETGNESLQ------- 77
Query: 84 ANGEFPTESREFAKRIFYTVFM-GSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 142
F V + + ++ A L V+I V A
Sbjct: 78 ----------------FIAVRLPYGVQADEQDCQDAIAFIQPDRV--LTVNIKGAVLASE 119
Query: 143 SLFQ 146
+
Sbjct: 120 QALR 123
Score = 33.1 bits (76), Expect = 0.090
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 24/65 (36%)
Query: 158 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 217
DEV +G+TY+ + Y + + P +VA ++++ Y
Sbjct: 223 DEVALGVTYDNIDDYLEGKNV---------------------PQQVARTIENW---YLKT 258
Query: 218 RHKMT 222
HK
Sbjct: 259 EHKRR 263
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 29.6 bits (66), Expect = 0.54
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 257 KIDELVKELDGEKVPFSESSDHEKMGTTSDGGGGMGVIAAGSGNPKA 303
K+ + E V + + + G +G +
Sbjct: 38 KLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRW 84
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 24/59 (40%)
Query: 43 SGGADSSSVAAIVGCMCQLVVKE----IANGD-----------EQVKADAIRIGRYANG 86
+G A+ +++ +++ +GD E+ D + + R A G
Sbjct: 169 TGRAEWKALSV---------LEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 218
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 28.9 bits (65), Expect = 2.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 42 LSGGADSSSVAAI 54
LSGG DSS VAA
Sbjct: 248 LSGGIDSSGVAAC 260
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 28.6 bits (64), Expect = 3.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 42 LSGGADSSSVAAI 54
LSGG DSS V A+
Sbjct: 245 LSGGLDSSLVTAL 257
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN;
1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A*
3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A*
2h8x_A*
Length = 363
Score = 28.3 bits (64), Expect = 3.3
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 229 HAESYSPEDNRFDL----RQFLYNARWPYQFRKIDELVKELDGEKVP 271
AE+ + N+ DL R L + W Y K EL E +P
Sbjct: 309 LAEAAL-QANQLDLVSVGRAHLADPHWAYFAAK--ELGVEKASWTLP 352
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 28.2 bits (64), Expect = 3.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 39 LLPLSGGADSSSVAAIV 55
LL +SGG DSS++A ++
Sbjct: 213 LLAVSGGVDSSTLALLL 229
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
pyrococcus horikoshii OT3, structural genomics, NPPSFA;
1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 27.9 bits (63), Expect = 3.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 39 LLPLSGGADSSSVAAIV 55
++ LSGG DSS+ A +
Sbjct: 24 IIALSGGVDSSTAAVLA 40
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 28.2 bits (64), Expect = 4.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 39 LLPLSGGADSSSVAAIV 55
++ LSGG DS+ A +V
Sbjct: 234 IVGLSGGVDSAVTATLV 250
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 28.0 bits (63), Expect = 4.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 39 LLPLSGGADSSSVAAIV 55
L+ LSGG DS+ A++
Sbjct: 244 LVLLSGGVDSTVCTALL 260
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 27.8 bits (63), Expect = 4.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 39 LLPLSGGADSSSVAAIV 55
+L LSGG DSS A ++
Sbjct: 231 ILGLSGGVDSSVTAMLL 247
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 27.6 bits (62), Expect = 5.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 39 LLPLSGGADSSSVAAIV 55
+ +SGG DS+ AA
Sbjct: 259 IAAMSGGIDSTVAAAYT 275
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 27.1 bits (61), Expect = 7.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 113 ETRMRA-KKLADEIGSWHLDVSIDTVV 138
R+ KL ++I D+ ID V+
Sbjct: 273 SARVNMGTKLGEKIAREWEDLDIDVVI 299
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A
{Thermus scotoductus} PDB: 3hf3_A*
Length = 349
Score = 27.1 bits (61), Expect = 8.3
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 229 HAESYSPEDNRFDL----RQFLYNARWPYQF 255
AE+ + DL R L + +P +
Sbjct: 302 QAETLL-QAGSADLVLLGRVLLRDPYFPLRA 331
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 26.8 bits (60), Expect = 8.4
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 186 MFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY 228
KN G L P EV ++ + I + + PS
Sbjct: 220 FIKNPSTSLGPTLEPEEVVNRL-----MHGILTEQKMIFIPSS 257
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN,
beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis}
SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Length = 338
Score = 27.1 bits (61), Expect = 8.7
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 229 HAESYSPEDNRFDL----RQFLYNARWPYQF 255
AE ++ R DL R+ L + +
Sbjct: 291 MAEEIL-QNGRADLIFIGRELLRDPFFARTA 320
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel,
oxidoreductase, flavoprotein; HET: FMN; 2.30A
{Geobacillus kaustophilus} PDB: 3gr8_A*
Length = 340
Score = 26.7 bits (60), Expect = 9.0
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 229 HAESYSPEDNRFDL----RQFLYNARWPYQF 255
AE ++ R DL R+ L N WPY
Sbjct: 291 QAEEIL-QNGRADLVFLGRELLRNPYWPYAA 320
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Length = 289
Score = 26.7 bits (58), Expect = 9.6
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 265 LDGEKVPFSESSDHEKMGTTSDGGGGMGVIAAGSGNPKAGH 305
L GE++ E D E G + + A G
Sbjct: 43 LPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGP 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,921,807
Number of extensions: 301718
Number of successful extensions: 799
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 52
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)