RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021929
(305 letters)
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 75.7 bits (185), Expect = 2e-16
Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 92/274 (33%)
Query: 13 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--ANGD 70
P++EI +L Y++++GA GF+L +SGG DS + G + QL V+ I GD
Sbjct: 17 DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGD 71
Query: 71 EQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM---------------------GSEN 109
Q A + G + + + +F K F
Sbjct: 72 AQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNK 131
Query: 110 SSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT--------------LTGKRPRY 155
+ + R R G L V + ++ F T LT ++ R
Sbjct: 132 GNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRT 191
Query: 156 KL--------------------------DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKN 189
L DE ++G++Y+E+ Y +++
Sbjct: 192 LLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV----------- 240
Query: 190 LCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 223
++V+E ++ K YS+ HK V
Sbjct: 241 ----------SAKVSEALE---KRYSMTEHKRQV 261
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 51.8 bits (123), Expect = 2e-08
Identities = 37/271 (13%), Positives = 71/271 (26%), Gaps = 54/271 (19%)
Query: 14 PEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKE--IANGD 70
EEEI +L YL+ +L +SGG DS + G +CQ+ + E + G+
Sbjct: 18 AEEEIRRSVD-FLKSYLQTYPFIKSLVLGISGGQDS----TLAGKLCQMAINELRLETGN 72
Query: 71 EQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHL 130
E ++ A+R+ + + +A L
Sbjct: 73 ESLQFIAVRL--------------------------PYGVQADEQDCQDAIAFIQPDRVL 106
Query: 131 DVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNL 190
V+I V A + + + + + G + +
Sbjct: 107 TVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAI 166
Query: 191 CYRWGARLTPSEVAEKVKHFFKY-------YSINRHKMTVLTPSYHAESYSPEDNRFD-- 241
+ + K + P+ A+ + D
Sbjct: 167 TGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPT--ADLEDDRPSLPDEV 224
Query: 242 --------LRQFLYNARWPYQ-FRKIDELVK 263
+ +L P Q R I+
Sbjct: 225 ALGVTYDNIDDYLEGKNVPQQVARTIENWYL 255
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 48.4 bits (114), Expect = 3e-07
Identities = 34/240 (14%), Positives = 60/240 (25%), Gaps = 49/240 (20%)
Query: 25 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGD-----------EQV 73
+L +++ G + LSGG DS+ V + CQ V KE A+ +
Sbjct: 13 FLEKEVQKRGFKKVVYGLSGGLDSAVVGVL----CQKVFKENAHALLMPSSVSMPENKTD 68
Query: 74 KADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 133
+ E+ + + + + R+R L D V
Sbjct: 69 ALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVI 128
Query: 134 IDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFH-CGPVSMFKNLCY 192
+ S + + TL G + E+ R I +L
Sbjct: 129 GTSNKSERMLGYGTLFGD--LACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFV 186
Query: 193 R-------------------------WGARLTPSEVA------EKVKHFFKYYSINRHKM 221
+ +A VK+ N K+
Sbjct: 187 GQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQLGYDEILVKNITSRIQKNAFKL 246
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 29.6 bits (65), Expect = 0.51
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 42 LSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 101
LSGG DSS ++AI + + + + E+ +A ++ +A G + + A+ +
Sbjct: 41 LSGGLDSSIISAI---TKKYAARRVED-QERSEAWWPQLHSFAVGLPGSPDLKAAQEVAN 96
Query: 102 TVFM 105
+
Sbjct: 97 HLGT 100
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.4 bits (59), Expect = 2.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 32 RSGASGFLLPLSGGADSSSVAAIVGCMC 59
+ G +L LSGG DSS A ++
Sbjct: 17 QVGDDKVILGLSGGVDSSVTAMLLHRAI 44
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal
domains {Bacillus stearothermophilus [TaxId: 1422]}
Length = 265
Score = 27.1 bits (59), Expect = 2.8
Identities = 19/189 (10%), Positives = 50/189 (26%), Gaps = 20/189 (10%)
Query: 62 VVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKL 121
+++ + +++ + DA+R+ R F + + + + +T +
Sbjct: 1 IIRTVGEAEKRFREDALRMMRAV---------RFVSELGFAL-------APDTEQAIVQN 44
Query: 122 ADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHC 181
A + +S++ + L R L E + L+ + ++
Sbjct: 45 APLLA----HISVERMTMEMEKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQLRLAAA 100
Query: 182 GPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFD 241
RW V E + N+ + +
Sbjct: 101 YRWPWLAAREERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRPEAWTN 160
Query: 242 LRQFLYNAR 250
+ F
Sbjct: 161 EQLFSAGLE 169
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase
{Pectobacterium carotovorum [TaxId: 554]}
Length = 296
Score = 26.9 bits (58), Expect = 3.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 42 LSGGADSSSVAAI 54
LSGG DSS V A+
Sbjct: 40 LSGGLDSSLVTAL 52
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 26.9 bits (58), Expect = 3.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 42 LSGGADSSSVAAIV 55
LSGG DSS VAA
Sbjct: 39 LSGGIDSSGVAACA 52
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
{Enterococcus faecalis [TaxId: 1351]}
Length = 167
Score = 26.1 bits (57), Expect = 4.7
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 247 YNARWPYQFRKIDELVKELDGEKVPFSESSDHEKMGTTS 285
Y W QF + + +K++ E E H +G+TS
Sbjct: 5 YQPAWVEQFEEEAQALKQILKENCLKVE---H--IGSTS 38
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 381
Score = 25.7 bits (56), Expect = 9.0
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 195 GARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQ 254
++ VA + + K L + +D RF N W Q
Sbjct: 273 PRTISDQNVAARSDLLVDQW----KKKAELYRTNVLLIPLGDDFRFK-----QNTEWDVQ 323
Query: 255 FRKIDELVKELDGEKVPFSESSDHEKMGTTSD 286
+ L + ++ + + + GT +
Sbjct: 324 RVNYERLFEHIN----SQAHFNVQAQFGTLQE 351
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,209,622
Number of extensions: 57927
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 16
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)