Query 021930
Match_columns 305
No_of_seqs 131 out of 1140
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 1.3E-65 2.9E-70 533.4 28.6 269 3-294 516-803 (805)
2 COG3217 Uncharacterized Fe-S p 100.0 3.5E-63 7.6E-68 440.1 22.8 263 5-298 2-266 (270)
3 KOG2362 Uncharacterized Fe-S p 100.0 2.5E-61 5.4E-66 433.0 16.9 291 2-300 40-336 (336)
4 PF03476 MOSC_N: MOSC N-termin 100.0 6.9E-34 1.5E-38 231.1 7.1 119 4-133 1-120 (120)
5 PF03473 MOSC: MOSC domain; I 100.0 3.2E-29 6.9E-34 206.9 8.7 120 156-293 11-133 (133)
6 KOG2142 Molybdenum cofactor su 99.4 2.1E-13 4.6E-18 134.3 4.0 195 6-239 465-670 (728)
7 PRK14499 molybdenum cofactor b 98.7 7.6E-08 1.6E-12 89.9 9.2 103 164-295 203-307 (308)
8 PRK11536 6-N-hydroxylaminopuri 98.0 4.9E-05 1.1E-09 68.0 10.6 107 164-298 55-167 (223)
9 COG2258 Uncharacterized protei 98.0 2.5E-05 5.4E-10 68.8 8.4 107 165-299 56-165 (210)
10 PF05962 HutD: HutD; InterPro 48.4 65 0.0014 27.8 6.6 51 4-55 15-73 (184)
11 KOG3347 Predicted nucleotide k 43.0 14 0.00031 31.4 1.4 28 187-214 3-40 (176)
12 PF03658 Ub-RnfH: RnfH family 25.1 44 0.00095 25.3 1.4 27 265-296 47-73 (84)
13 PF14952 zf-tcix: Putative tre 24.6 20 0.00043 23.7 -0.4 19 212-230 3-21 (44)
14 COG4416 Com Mu-like prophage p 24.2 43 0.00094 23.2 1.1 13 219-231 23-35 (60)
15 PRK14499 molybdenum cofactor b 22.2 1E+02 0.0022 29.1 3.6 36 3-39 161-197 (308)
16 TIGR03635 S17_bact 30S ribosom 21.6 80 0.0017 23.0 2.2 15 284-298 48-62 (71)
17 CHL00142 rps17 ribosomal prote 20.2 85 0.0018 23.7 2.1 16 283-298 49-64 (84)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=1.3e-65 Score=533.40 Aligned_cols=269 Identities=33% Similarity=0.569 Sum_probs=233.9
Q ss_pred CceEEeeeeeecccCCCCeeeeceeeeeccccccCceeEEEecCCceeeecCCcceeEEEeecCCcccccCCCCCCCceE
Q 021930 3 AAAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (305)
Q Consensus 3 ~~~~V~~L~iyPVKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l 82 (305)
..++|++|||||||||+|++| ++|+|++.||.|||+|||+|.+|+++|||++|+|++|++.++.+ ++.|
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v-~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l 584 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSV-ERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKL 584 (805)
T ss_pred CCCEEEEEEEeccccCCCcee-eEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeE
Confidence 456899999999999999999 99999999999999999999999999999999999999999532 4679
Q ss_pred EEEeCCCC-eEEEeccCCCC--CccceEEecccccccccchHHHHHHHHhhCCCeEEEEecCCCCCCCCC-----CCCC-
Q 021930 83 VIRAPGMQ-ALKISLSKPRD--IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVD-----PKYA- 153 (305)
Q Consensus 83 ~l~~p~~~-~l~v~l~~~~~--~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~~rL~~~~~~~~~r~~~-----~~~~- 153 (305)
+|++|+++ ++.|++..... ....+.+|++.+.+++||+++++|||++||++|+|+++.+... |... +.+.
T Consensus 585 ~l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~ 663 (805)
T PLN02724 585 VVRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCG 663 (805)
T ss_pred EEEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-cccccccccccccc
Confidence 99999987 69999976432 3457899999999999999999999999999999999976543 3221 1111
Q ss_pred -CCcceeccCCCceeeeeHhHHHHHHHHhCC-------CCCCCcccceEEEeCCCCCCCCCcceEEECCeEEEEeeeCCC
Q 021930 154 -AGEKIMFSDCYPFMLLSQGSLDALNKLLKE-------PIPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSR 225 (305)
Q Consensus 154 -~~~~~~f~D~~P~llis~aSl~~l~~~l~~-------~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~~~~~~~~~c~R 225 (305)
...+.+|+|.+||||+|++||++||++++. +++++||||||||+|.+||+||.|++|+||+++|++++||.|
T Consensus 664 ~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG~~~~~~~~~C~R 743 (805)
T PLN02724 664 DDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNR 743 (805)
T ss_pred CcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEEECCEEEEEecccCC
Confidence 224589999999999999999999999973 699999999999999999999999999999999999999999
Q ss_pred cccCeeeCCCCCC--CCChhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEe
Q 021930 226 CKIPTINQDTGDA--GPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVL 294 (305)
Q Consensus 226 C~~~~vdp~tg~~--~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~ 294 (305)
|+||||||+||++ +.|||+||++||+ ..++++||+|+++... ....| +|+|||.|++.
T Consensus 744 C~~~tvDp~tg~~~~~~epl~tL~~~R~---------~~~~~~FG~~~~~~~~-~~~~~-~i~vGd~v~~~ 803 (805)
T PLN02724 744 CQMINIDQETGLVNPSNEPLATLASYRR---------VKGKILFGILLRYEIS-DKRDQ-WIAVGSRVNPR 803 (805)
T ss_pred CCCCcCCcccCccCCCCChHHHHHHHhC---------cCCCCCccceeecccc-CCCCc-EEEeCCEEEec
Confidence 9999999999986 5799999999994 3478999999977311 12445 99999999874
No 2
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=3.5e-63 Score=440.05 Aligned_cols=263 Identities=31% Similarity=0.597 Sum_probs=236.0
Q ss_pred eEEeeeeeecccCCCCeeeeceeeeeccccccCceeEEEecCCceeeecCCcceeEEEeecCCcccccCCCCCCCceEEE
Q 021930 5 AKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVI 84 (305)
Q Consensus 5 ~~V~~L~iyPVKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l 84 (305)
++|++||||||||++|+.+ +++.+...||.+||+|||+|.+|+++|+|++|+|..+++.+.+ ..++|
T Consensus 2 ~~ls~L~iyPvKSl~g~~l-~~a~v~~~Gl~~DR~fml~d~dG~~itar~~pa~~~~~~~~~~------------~~~~l 68 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERL-SRALVDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAYEH------------DGLRL 68 (270)
T ss_pred ccchheeeeccccccchhh-hhheeeccCCccceEEEEEcCCCceeccccccceeEeeeeccc------------cceEE
Confidence 4699999999999999999 9999999999999999999999999999999999999996533 35788
Q ss_pred EeCCCCeEEEeccCCCCCccceEEecccccccccchHHHHHHHHhhCCCeEEEEecCCCCCCCCCCCCCCCcceeccCCC
Q 021930 85 RAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGEKIMFSDCY 164 (305)
Q Consensus 85 ~~p~~~~l~v~l~~~~~~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~~rL~~~~~~~~~r~~~~~~~~~~~~~f~D~~ 164 (305)
++++.+.+.+...+ ....+++||++++.....++++++|||.|||+++.|++.+.+..++...+ .....+|+|.+
T Consensus 69 ~~~~~~~~~v~~~~--~~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~v~L~~~~~~~~r~v~~~---p~~~~~fadg~ 143 (270)
T COG3217 69 TAPDGEELYVRFAD--AQRAPVEVWGDHFTADAAGDAANDWLSGFLGRAVSLRWDGAGFARRVKAG---PAVPVTFADGY 143 (270)
T ss_pred ecCCCccceeeccc--cccccceeeccccccccchhHHHHHHHhhhceeeEEEecCccccccccCC---CceeeEecCCc
Confidence 89988888887754 44568999999999999999999999999999999999876543332111 34578999999
Q ss_pred ceeeeeHhHHHHHHHHhCCCCCCCcccceEEEeCCCCCCCCCcceEEECCeEEEEeeeCCCcccCeeeCCCCCC--CCCh
Q 021930 165 PFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSRCKIPTINQDTGDA--GPEP 242 (305)
Q Consensus 165 P~llis~aSl~~l~~~l~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~~--~~~p 242 (305)
|+|++|++||++|+++.+..++|+|||||||++|.++|.||.|+.|+||++.|.+++||.||++||+||+||++ ..+|
T Consensus 144 p~l~~~~aSl~dL~~r~~~~~~merFRpNlvv~ge~a~aEd~w~~i~IG~v~F~~vkPC~RCi~Ttvd~~tGe~~p~~~p 223 (270)
T COG3217 144 PILLFNTASLADLRRRVPANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCSRCIFTTVDPDTGERRPGGEP 223 (270)
T ss_pred eEEEEccccHHHHhhhccCCCChhhCCCceEEeecccccccCceEEEEccEEEEEeccchhcceeeECCcccccCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 4799
Q ss_pred hHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEeEecC
Q 021930 243 NETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVT 298 (305)
Q Consensus 243 l~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~~~~ 298 (305)
+.+|+++|... ..+++.||+|+++. ..| .|++||.|+++..++
T Consensus 224 ~~~~~~~R~~~-------d~~~~~FG~n~~a~-----~~g-~ir~Gd~ve~l~~~~ 266 (270)
T COG3217 224 LFTLNRFRTNP-------DAGGVLFGQNLIAR-----NEG-RIRVGDAVEVLAVGP 266 (270)
T ss_pred hHHHHhhhccc-------ccCcccccceEEec-----cCc-ceecCcceeEEEecc
Confidence 99999999631 14689999999998 677 899999999999877
No 3
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=2.5e-61 Score=433.03 Aligned_cols=291 Identities=42% Similarity=0.733 Sum_probs=242.9
Q ss_pred CCceEEeeeeeecccCCCCeeeeceeeeeccc----cccCceeEEEecCCceeeecCCcceeEEEeecCCcccccCCCCC
Q 021930 2 EAAAKVKSIFVYPIKSCRGISVCQQAPLTPTG----FRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPT 77 (305)
Q Consensus 2 ~~~~~V~~L~iyPVKS~~g~~v~~~~~l~~~G----l~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~ 77 (305)
...++|++|++||||||+|.+| .+..+|+.| ..+||.|++++.+|+++|+|..|+|.+|+....+..+...|...
T Consensus 40 ~~vg~v~slhiyPiKSC~~~~v-~q~~ct~~g~~~e~~~DR~~lvVn~kg~~iTaRv~P~l~~ies~~~~~~~~v~~~~~ 118 (336)
T KOG2362|consen 40 VPVGRVKSLHIYPIKSCKGIDV-FQYKCTPLGPSMEFLWDRTFLVVNEKGKFITARVKPKLVLIESEMPDGAFLVDWPGP 118 (336)
T ss_pred EEeeeeeeeEEEEeccccccch-hHhhcCCCCcchhheeeceEEEEeccceEEEeeccceEEEeecccccceeEEecCCC
Confidence 4568999999999999999999 999999988 78999999999999999999999999999998766555556532
Q ss_pred -CCceEEEEeCCCCeEEEeccCCCCCccceEEecccccccccchHHHHHHHHhhCCCeEEEEecCCCCCCCCCCCCCCCc
Q 021930 78 -GRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGE 156 (305)
Q Consensus 78 -~~~~l~l~~p~~~~l~v~l~~~~~~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~~rL~~~~~~~~~r~~~~~~~~~~ 156 (305)
....+....++++.+.+.+.......+...+|.+...+.+.+.+..+|+..+.++++++.+......++...|.+.++.
T Consensus 119 ~~~s~~~~~~l~~~~~~~~t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~~~~p~~~~~d 198 (336)
T KOG2362|consen 119 EKDSVLVFRVLGNKRLKVATLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETWWNNPVPKRGD 198 (336)
T ss_pred cchhhhhhhhccCCccccccccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCccccCCCccCccc
Confidence 3334455566666665555433333333444444444444444555666666788899999877777788888888888
Q ss_pred ceeccCCCceeeeeHhHHHHHHHHhCCCCCCCcccceEEEeCCCCCCCCCcceEEECCeEEEEeeeCCCcccCeeeCCCC
Q 021930 157 KIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSRCKIPTINQDTG 236 (305)
Q Consensus 157 ~~~f~D~~P~llis~aSl~~l~~~l~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vdp~tg 236 (305)
..+|.|.+|+||+|++||++||.+|+++|+++||||||+|+|+.||+||.|.+|+||+++|+.+++|+||++|||||+||
T Consensus 199 ~~~f~D~~Pfli~s~aSL~dLNt~L~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~Igd~~~~~v~~CtRCiltTV~petG 278 (336)
T KOG2362|consen 199 STTFSDLAPFLIASQASLDDLNTRLDKPVPMNNFRPNIVVDGCDAFAEDKWDEIRIGDAEFQCVAPCTRCILTTVDPETG 278 (336)
T ss_pred cccccccchhhhhchhhHHHHHhhhcCCccHhhcccceEEecCccccccccceEEEccEEEEEEeeccceeeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ChhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEeEecCCc
Q 021930 237 DAGP-EPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVTSA 300 (305)
Q Consensus 237 ~~~~-~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~~~~~~ 300 (305)
+++. +|+++|++||.+. .......++++.||+|+... +.| +|+|||.|.|+.+.+++
T Consensus 279 ~~~k~qpletLr~fR~~~-~~~~~~~~~sp~fGv~~~~~-----~~g-~I~vGd~Vyv~~k~~~~ 336 (336)
T KOG2362|consen 279 EMSKMQPLETLREFRLDP-GKPRKVHMGSPLFGVYAGLV-----NEG-TIKVGDTVYVLYKPSSF 336 (336)
T ss_pred cccccCchhhHHhhhcCC-cccccccCCCcccceeeccc-----ccc-eEEeCCEEEEEecCCCC
Confidence 9986 9999999999865 33345567899999999998 788 99999999999988764
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=100.00 E-value=6.9e-34 Score=231.11 Aligned_cols=119 Identities=41% Similarity=0.810 Sum_probs=64.8
Q ss_pred ceEEeeeeeecccCCCCeeeeceeeeeccccc-cCceeEEEecCCceeeecCCcceeEEEeecCCcccccCCCCCCCceE
Q 021930 4 AAKVKSIFVYPIKSCRGISVCQQAPLTPTGFR-WDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (305)
Q Consensus 4 ~~~V~~L~iyPVKS~~g~~v~~~~~l~~~Gl~-~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l 82 (305)
|++|++||+||||||+|+++ +++.|++.||. |||+|||+|.+|+|+|||++|+|++|++.++.+ .+.|
T Consensus 1 m~~v~~L~iyPIKS~~g~~~-~~~~~~~~Gl~~~DR~~~l~d~~g~~it~r~~P~l~~i~~~~~~~----------~~~l 69 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEV-DEAEVTPSGLKAGDRRFMLVDEDGRFITQRQYPRLALIRPEIDED----------DGTL 69 (120)
T ss_dssp --------------------------------GT--SEEEEETTS-EE-TTT-GGGG--EEEE-------------SSEE
T ss_pred Cccccccccccccccccccc-cccccccccCCccchhheeECCCCCEEeeccCcceeeEEEEeecc----------eeEE
Confidence 58999999999999999999 99999999996 999999999999999999999999999999632 4789
Q ss_pred EEEeCCCCeEEEeccCCCCCccceEEecccccccccchHHHHHHHHhhCCC
Q 021930 83 VIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKP 133 (305)
Q Consensus 83 ~l~~p~~~~l~v~l~~~~~~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~ 133 (305)
+|++||++.+.+++.........+.+|++.+.+++||+++++|||++||+|
T Consensus 70 ~l~~~~~~~l~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 70 TLSAPGMPPLEIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp EEE-SSS-EEEEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred EEECCCCceEEEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 999999999999998545566789999999999999999999999999986
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.96 E-value=3.2e-29 Score=206.89 Aligned_cols=120 Identities=40% Similarity=0.619 Sum_probs=93.7
Q ss_pred cceeccCCCceeeeeHhHHHHHHHHhCCCC-CCCcccceEEEeCCCCCCCCCc--ceEEECCeEEEEeeeCCCcccCeee
Q 021930 156 EKIMFSDCYPFMLLSQGSLDALNKLLKEPI-PINRFRPNILVDGCEPFSEDTW--TEVRINKFTFQGVKLCSRCKIPTIN 232 (305)
Q Consensus 156 ~~~~f~D~~P~llis~aSl~~l~~~l~~~v-~~~RFRpNIvI~g~~pf~Ed~W--~~l~IG~~~~~~~~~c~RC~~~~vd 232 (305)
....|+|.+|+||+|++|+++|+++++.+. +++||||||+|+|.+||+||.| ++++||++.|+++++|.||.++++|
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG~~~l~v~~~~~rC~~~~~~ 90 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEPGLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIGDAVLEVTQPCPRCVMPNVD 90 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCCGGSCCCCT-SEEECS-T---TCCGBTEEEECTTEEEEEEEE----CHHHHH
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccccCCHhHCCCCEEEeccccccccccceeeeccCCEEEEEEeCcCCCCcccee
Confidence 467899999999999999999999999875 9999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEE
Q 021930 233 QDTGDAGPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFV 293 (305)
Q Consensus 233 p~tg~~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v 293 (305)
|+||.++.+-...+..+. ....+|+|+.+. ..| .|+|||+|+|
T Consensus 91 ~~tg~~~~~~~~~~~~~~------------~~~~~G~~~~V~-----~~G-~I~vGD~V~V 133 (133)
T PF03473_consen 91 PDTGERDPEGKPLFGQNA------------SPGRRGVYARVI-----KGG-TIRVGDEVEV 133 (133)
T ss_dssp HCHCTCTSTTHHHHHHHH------------CCTSS-EEEEEE-----E-E-EEETTSEEEE
T ss_pred eccCcccchhhhhhhhhe------------ecCCceEEEEec-----cCC-EEccCCeEEC
Confidence 999999888554454443 334789999998 677 9999999987
No 6
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=99.38 E-value=2.1e-13 Score=134.28 Aligned_cols=195 Identities=22% Similarity=0.311 Sum_probs=126.3
Q ss_pred EEeeeeeecccCCCCeeeeceeeeeccccccCceeEEEecCCceeeecCCcceeEEEeecCCcccccCCCCCCCceEEEE
Q 021930 6 KVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIR 85 (305)
Q Consensus 6 ~V~~L~iyPVKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~ 85 (305)
.+.+++.|||| |+.+++ +++.....||.|||.||++|-+|.++++++++++.||++.++. +.
T Consensus 465 ~d~~~~s~~~~-~~~~EI-~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~----------------~~ 526 (728)
T KOG2142|consen 465 FDAAVASYPIK-CAAFEI-EEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKV----------------QE 526 (728)
T ss_pred hhhhhhhhhhh-hceeEe-eccCccccccccccccccccccccceeeecccceeeeccccch----------------hh
Confidence 35678899999 999999 9999999999999999999999999999999999999999853 11
Q ss_pred eCCCCeEEEeccCC--CCCccceEEec-ccccccccchHHHHHHHHhhCCCe------EEEEecCCCCC--CCCCCCCCC
Q 021930 86 APGMQALKISLSKP--RDIADGVSVWE-WCGSALAEGAEASNWFTNYLGKPS------RLVRYNAESET--RPVDPKYAA 154 (305)
Q Consensus 86 ~p~~~~l~v~l~~~--~~~~~~~~v~~-~~~~~~d~g~~~~~wlS~~lg~~~------rL~~~~~~~~~--r~~~~~~~~ 154 (305)
..+++ .+|+++.. ......+.++. ..++++|+++....|+++..|+.. .|+ ..+.... +...--..-
T Consensus 527 d~~~~-~~vs~~~sl~~~~a~~~s~~d~~~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl~-~~~~~~~~~~~~nlvq~y 604 (728)
T KOG2142|consen 527 DEQSE-RRVSFPTSLEQGEASKCSSYDCPPCRGIDHVDSLGLNLTTNRGRELLNWLVQSLR-NLQHSESSSTTVNLVQIY 604 (728)
T ss_pred hcccc-eeecchhhhhhhhhhhcccccCccccccchhhhhhHHhhhhhhhhHHHHHHHhcc-cccccccccccccceeee
Confidence 11122 23333211 01111122221 346778999988999988777652 221 1110000 000000000
Q ss_pred CcceeccCCCceeeeeHhHHHHHHHHhCCCCCCCcccceEEEeCCCCCCCCCcceEEECCeEEEEeeeCCCcccCeeeCC
Q 021930 155 GEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSRCKIPTINQD 234 (305)
Q Consensus 155 ~~~~~f~D~~P~llis~aSl~~l~~~l~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vdp~ 234 (305)
+.++.+.....+.. +|.+ -..|||.||||++...|+|-+|..+-||...|.. ||.| ++|+.
T Consensus 605 gpk~~~erG~~~~f----nl~d---------~~~~fr~p~IV~~lae~E~isl~~~~l~~iri~d--p~~r----~~dq~ 665 (728)
T KOG2142|consen 605 GPKTKYERGPAVAF----NLFD---------LSKRFRAPIIVNKLAEREEISLGELSLGHIRIQD--PCHR----DIDQL 665 (728)
T ss_pred cCccccccChhhee----ehhh---------hhccccchhhhcchhhhhcccccceeeeeeEEec--Ccch----hhhHH
Confidence 01111111111100 1111 2579999999999999999999999999999887 8999 67888
Q ss_pred CCCCC
Q 021930 235 TGDAG 239 (305)
Q Consensus 235 tg~~~ 239 (305)
+|++.
T Consensus 666 ~~~r~ 670 (728)
T KOG2142|consen 666 LGQRR 670 (728)
T ss_pred hhhhc
Confidence 88864
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=98.69 E-value=7.6e-08 Score=89.91 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=75.3
Q ss_pred CceeeeeHhHHHHHHHHhCCC-CCCCcccceEEEeCCCCCCCCCcceEEECC-eEEEEeeeCCCcccCeeeCCCCCCCCC
Q 021930 164 YPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGCEPFSEDTWTEVRINK-FTFQGVKLCSRCKIPTINQDTGDAGPE 241 (305)
Q Consensus 164 ~P~llis~aSl~~l~~~l~~~-v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~-~~~~~~~~c~RC~~~~vdp~tg~~~~~ 241 (305)
..+++++.++++.++ .++.+ +++..||.||+++|.....-.-=.+|+||+ +.|+++.+|..|.-.........
T Consensus 203 RqVsl~~~E~~~~~~-~~g~~~l~pG~fGENLtv~Gidl~~l~iGdrlrIG~~avLeVt~pr~PC~~~~~~l~~~~---- 277 (308)
T PRK14499 203 RQVSLLDISSIKKME-EYGLKGLCFGKFAENITTENLDLQKISLGTKLKIGDNVVLEISQIGKKCHGSGCEIARQV---- 277 (308)
T ss_pred ceEEEcCHHHHHHHH-hcCCcCCCcccccceEEEcCcCHHHCCCCCEEEECCcEEEEEEeCCCCCcCcccchhHhc----
Confidence 469999999999987 45555 899999999999998332111128999999 99999999999975321111110
Q ss_pred hhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEeE
Q 021930 242 PNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLK 295 (305)
Q Consensus 242 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~ 295 (305)
+. ..-+.=|+|+.|. ++| .|++||.|++++
T Consensus 278 --------~~----------~~~~r~G~y~RVl-----~~G-~Ir~GD~V~l~~ 307 (308)
T PRK14499 278 --------GV----------CIMPKEGLFAKVL-----KGG-KIKPGDIIEILN 307 (308)
T ss_pred --------Cc----------cCcccceEEEEEe-----cCe-EEcCCCEEEEcc
Confidence 00 0111259999999 777 999999999875
No 8
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=98.02 E-value=4.9e-05 Score=68.00 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=82.1
Q ss_pred CceeeeeHhHHHHHHHHhCC---CCCCCcccceEEEeCCCCCCCCCc---ceEEECCeEEEEeeeCCCcccCeeeCCCCC
Q 021930 164 YPFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDTW---TEVRINKFTFQGVKLCSRCKIPTINQDTGD 237 (305)
Q Consensus 164 ~P~llis~aSl~~l~~~l~~---~v~~~RFRpNIvI~g~~pf~Ed~W---~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~ 237 (305)
..+++.+.++.+..++.++. .+..--|==||.++|. .|++- ..++||++.|++..|+..|--. +...|.
T Consensus 55 kAV~~y~~e~y~~w~~~~~~~~~~l~~G~fGENLtv~Gl---~e~~v~IGD~~riG~avleVsqpR~PC~kl--~~r~~~ 129 (223)
T PRK11536 55 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGL---TESNVFIGDIFRWGEALIQVTQPRSPCYKL--NYHFDI 129 (223)
T ss_pred ceEEEcCHhHHHHHHHHccccccccCCCCccCCEEecCc---ChhhCCccCEEEECCEEEEEecCCCCCCch--hhhccc
Confidence 45889999999999988864 4666789999999974 56655 8999999999999999999544 333332
Q ss_pred CCCChhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEeEecC
Q 021930 238 AGPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVT 298 (305)
Q Consensus 238 ~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~~~~ 298 (305)
++..+.+.+. + .-|+|+.|. ++| .|++||+|+++++.+
T Consensus 130 --~~~~~~~~~~-------------g--~~G~Y~RVL-----~~G-~V~~GD~v~l~~r~~ 167 (223)
T PRK11536 130 --SDIAQLMQNS-------------G--KCGWLYRVI-----APG-KVSADAPLELVSRVS 167 (223)
T ss_pred --hhHHHHHHhh-------------C--CcEEEEEEE-----CCc-EEcCCCEEEEEeCCC
Confidence 2333333332 2 349999999 788 999999999999974
No 9
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=2.5e-05 Score=68.82 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=84.4
Q ss_pred ceeeeeHhHHHHHHHHhCCCCCCCcccceEEEeCCCCCCCCCc---ceEEECCeEEEEeeeCCCcccCeeeCCCCCCCCC
Q 021930 165 PFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDTW---TEVRINKFTFQGVKLCSRCKIPTINQDTGDAGPE 241 (305)
Q Consensus 165 P~llis~aSl~~l~~~l~~~v~~~RFRpNIvI~g~~pf~Ed~W---~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~~~~~ 241 (305)
.+.+.+.+.+......++..+.+-=|+=||.++|. .|..- .+++||++.|++..++.-|.-.+.-.+. ++
T Consensus 56 Av~~y~~ehy~~w~~~lg~~l~pg~fGENltt~Gl---~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~----~~ 128 (210)
T COG2258 56 AVCHYPREHYAAWETLLGRGLQPGAFGENLTTSGL---DEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGI----PD 128 (210)
T ss_pred eEEEccHHHHHHHHHHhCCCCCcccccCceeecCc---chhhccccCEEEeccEEEEecCCCCchHHHHHhcCC----cc
Confidence 47889999999999999999999999999999986 44444 7999999999999999999876553321 22
Q ss_pred hhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEeEecCC
Q 021930 242 PNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVTS 299 (305)
Q Consensus 242 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~~~~~ 299 (305)
..+.+.+ .| .=|+|+.|. .+| .|++||++.++.+.+.
T Consensus 129 ~~~~~~~-------------~G--~~G~y~RVL-----~~G-~v~~gD~l~l~~r~~~ 165 (210)
T COG2258 129 LAKRFQQ-------------TG--RTGWYARVL-----EEG-KVRAGDPLKLIPRPSP 165 (210)
T ss_pred HHHHhhc-------------cC--cccEEEEEc-----ccc-eecCCCceEEecCCCC
Confidence 2222221 13 359999999 777 9999999999998764
No 10
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=48.36 E-value=65 Score=27.84 Aligned_cols=51 Identities=24% Similarity=0.407 Sum_probs=36.1
Q ss_pred ceEEeeeeeecccC---CCCeeeeceeeeeccc-c----ccCceeEEEecCCceeeecCC
Q 021930 4 AAKVKSIFVYPIKS---CRGISVCQQAPLTPTG-F----RWDRQWMVINNNGRAYTQRNE 55 (305)
Q Consensus 4 ~~~V~~L~iyPVKS---~~g~~v~~~~~l~~~G-l----~~DR~~~l~d~~g~~lt~r~~ 55 (305)
-++=.+|++||-.+ -=..++ +.|.+...| | -+||..++++.+|-.++....
T Consensus 15 gG~T~Ei~~~P~~~~~~~F~wRi-S~A~V~~~g~FS~FpG~~R~l~~L~G~gl~L~~~~~ 73 (184)
T PF05962_consen 15 GGTTREIAIYPEGSAKRDFDWRI-SIATVEADGPFSDFPGYDRILTLLEGNGLRLTHDGQ 73 (184)
T ss_dssp SEEEEEEEE-SSSCCCCC-SEEE-EEEEE-SSEEE---TT-EEEEEEEESS-EEEEETTC
T ss_pred CeEEEEEEEcCCCCccCCceEEE-EEEEEcCCCCCCCCCCCcEEEEEEeCCcEEEecCCC
Confidence 46678999999876 222478 889998887 3 469999999988888877655
No 11
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=43.02 E-value=14 Score=31.43 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=19.8
Q ss_pred CCcccceEEEeCCCC-----CCC-----CCcceEEECC
Q 021930 187 INRFRPNILVDGCEP-----FSE-----DTWTEVRINK 214 (305)
Q Consensus 187 ~~RFRpNIvI~g~~p-----f~E-----d~W~~l~IG~ 214 (305)
++|-||||+|.|.+. +.| -..+.|.||+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 569999999998643 222 2447888887
No 12
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=25.07 E-value=44 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.073 Sum_probs=14.7
Q ss_pred cccceeeEEecccCCCCCCEEEeCCeEEEeEe
Q 021930 265 IYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKK 296 (305)
Q Consensus 265 ~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~~ 296 (305)
..+|+|.... .....++-||.|+|-..
T Consensus 47 ~~vGIfGk~~-----~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 47 NKVGIFGKLV-----KLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp SEEEEEE-S-------TT-B--TT-EEEEE-S
T ss_pred ceeeeeeeEc-----CCCCcCCCCCEEEEecc
Confidence 4578888877 55568999999999653
No 13
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=24.64 E-value=20 Score=23.68 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=16.5
Q ss_pred ECCeEEEEeeeCCCcccCe
Q 021930 212 INKFTFQGVKLCSRCKIPT 230 (305)
Q Consensus 212 IG~~~~~~~~~c~RC~~~~ 230 (305)
+|-.+++.++.|+.|...|
T Consensus 3 l~k~TlRGirkCp~CGt~N 21 (44)
T PF14952_consen 3 LGKPTLRGIRKCPKCGTYN 21 (44)
T ss_pred cchhhHhccccCCcCcCcc
Confidence 5667889999999999987
No 14
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=24.20 E-value=43 Score=23.16 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=10.1
Q ss_pred EeeeCCCcccCee
Q 021930 219 GVKLCSRCKIPTI 231 (305)
Q Consensus 219 ~~~~c~RC~~~~v 231 (305)
+-..|+||..+|-
T Consensus 23 le~KCPrCK~vN~ 35 (60)
T COG4416 23 LEKKCPRCKEVNE 35 (60)
T ss_pred eeecCCccceeee
Confidence 4569999998754
No 15
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=22.23 E-value=1e+02 Score=29.09 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=31.3
Q ss_pred CceEEeeeeeecccCCCCeeeeceeee-eccccccCce
Q 021930 3 AAAKVKSIFVYPIKSCRGISVCQQAPL-TPTGFRWDRQ 39 (305)
Q Consensus 3 ~~~~V~~L~iyPVKS~~g~~v~~~~~l-~~~Gl~~DR~ 39 (305)
+|++|.+|++.|-++..=.++ ++..+ ...|+.+|+.
T Consensus 161 ~~~~VlsI~is~~~gi~K~~v-~~~~~v~~~GieGD~H 197 (308)
T PRK14499 161 KTAKVVSINISRQKGTPKEPV-EEAVLIENHGIEGDAH 197 (308)
T ss_pred CCCEEEEEEeCCCCCccceec-CceEEEccCCCCCCcC
Confidence 578999999999999999999 87765 4689999984
No 16
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=21.62 E-value=80 Score=23.03 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.9
Q ss_pred EEEeCCeEEEeEecC
Q 021930 284 VLKLGDPVFVLKKVT 298 (305)
Q Consensus 284 ~I~VGD~v~v~~~~~ 298 (305)
..++||.|.|.+-+|
T Consensus 48 ~~k~GD~V~I~ecrP 62 (71)
T TIGR03635 48 ECKVGDVVRIIETRP 62 (71)
T ss_pred CCCCCCEEEEEEcCC
Confidence 699999999998655
No 17
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=20.17 E-value=85 Score=23.74 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.2
Q ss_pred CEEEeCCeEEEeEecC
Q 021930 283 KVLKLGDPVFVLKKVT 298 (305)
Q Consensus 283 ~~I~VGD~v~v~~~~~ 298 (305)
...++||.|.|.+-+|
T Consensus 49 n~~~~GD~V~I~e~RP 64 (84)
T CHL00142 49 NECNIGDQVLIEETRP 64 (84)
T ss_pred CCCCCCCEEEEEEcCC
Confidence 3799999999988654
Done!