Query 021930
Match_columns 305
No_of_seqs 131 out of 1140
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 2.9E-33 9.8E-38 231.0 10.0 119 7-144 1-122 (136)
2 1oru_A YUAD protein; structura 99.8 6E-20 2E-24 160.0 15.4 117 163-299 66-187 (195)
3 1o65_A Hypothetical protein YI 99.3 4.5E-12 1.6E-16 113.6 10.4 106 164-296 67-177 (246)
4 3esg_A HUTD, putative uncharac 35.9 84 0.0029 26.4 6.5 50 4-54 28-84 (193)
5 1qd7_I S17 ribosomal protein; 18.3 61 0.0021 23.7 2.1 15 284-298 49-63 (89)
6 1v1c_A Obscurin; muscle, sarco 17.9 73 0.0025 22.3 2.3 34 266-299 4-40 (71)
7 2gdl_A Myeloid antimicrobial p 15.9 33 0.0011 19.3 0.1 10 186-195 13-22 (31)
8 1n0x_P B2.1 peptide, immunoglo 15.5 81 0.0028 17.0 1.6 18 36-53 1-18 (26)
9 3iz5_K 60S ribosomal protein L 13.9 58 0.002 27.7 1.1 19 32-50 3-21 (206)
10 2cr8_A MDM4 protein; ZF-ranbp 13.9 21 0.00071 23.4 -1.3 31 201-231 6-36 (53)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=100.00 E-value=2.9e-33 Score=231.03 Aligned_cols=119 Identities=27% Similarity=0.496 Sum_probs=108.2
Q ss_pred EeeeeeecccCCCCeeeeceeeeeccccccCceeEEEecCCceeeecCCcceeEEEeecCCcccccCCCCCCCceEEEEe
Q 021930 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRA 86 (305)
Q Consensus 7 V~~L~iyPVKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~~ 86 (305)
|++|||||||||+|++| +++. .|||+|||+|.+|+|+|||++|+|++|++.++. +.|+|++
T Consensus 1 v~~L~iYPIKSc~g~~l-~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~ 61 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQ-SEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKA 61 (136)
T ss_dssp CCCCCEEEETTTEEECC-GGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEEC
T ss_pred CceEEEeccccCCceec-CccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEe
Confidence 57999999999999999 9987 999999999999999999999999999999963 4799999
Q ss_pred CCCCeEEEeccCCC---CCccceEEecccccccccchHHHHHHHHhhCCCeEEEEecCCCC
Q 021930 87 PGMQALKISLSKPR---DIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESE 144 (305)
Q Consensus 87 p~~~~l~v~l~~~~---~~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~~rL~~~~~~~~ 144 (305)
||++++.|++.+.. .....++||++.+++++||+++++|||++||+||||++++++..
T Consensus 62 pg~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~~ 122 (136)
T 2exn_A 62 PGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMA 122 (136)
T ss_dssp SSSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTTC
T ss_pred CCCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCCc
Confidence 99999999997653 13457899999999999999999999999999999999987654
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.83 E-value=6e-20 Score=160.05 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=93.2
Q ss_pred CCceeeeeHhHHHHHHHHhCCC-CCCCcccceEEEeCC-CCCCCCCcceEEECC-eEEEEeeeCCCcccC--eeeCCCCC
Q 021930 163 CYPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGC-EPFSEDTWTEVRINK-FTFQGVKLCSRCKIP--TINQDTGD 237 (305)
Q Consensus 163 ~~P~llis~aSl~~l~~~l~~~-v~~~RFRpNIvI~g~-~pf~Ed~W~~l~IG~-~~~~~~~~c~RC~~~--~vdp~tg~ 237 (305)
..+++|++.+|++++++.++.+ +++.+||+||+++|. ..+.++-|++|+||+ +.|+++.+|.||..+ ++++.++.
T Consensus 66 ~r~V~l~~~e~~~~~~~~~g~~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG~~a~leVt~~~~pC~~~~~~i~~~~~~ 145 (195)
T 1oru_A 66 RRQISIVSIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQSYYPD 145 (195)
T ss_dssp CCCEEEEEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHHHHHHHHSTT
T ss_pred CceEEECCHHHHHHHHHHcCCCCCCcccccCCEEEeCCCChhhCCCCCEEEECCCEEEEEeeccCCCCCCccccchhccc
Confidence 4579999999999999998876 999999999999998 656666679999997 999999999999984 45654421
Q ss_pred CCCChhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEeEecCC
Q 021930 238 AGPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVTS 299 (305)
Q Consensus 238 ~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~~~~~ 299 (305)
.++..+.+.+.. ...||+|+.|. +.| .|++||.|+++.+..+
T Consensus 146 -~~g~~~~~~~~~-------------~~r~G~~~rVl-----~~G-~I~~GD~v~l~~~~~~ 187 (195)
T 1oru_A 146 -QPKLASAFVRHA-------------LGIRGIVCIVE-----RPG-AVYTGDEIEVHSYQRK 187 (195)
T ss_dssp -STTHHHHHHHHS-------------TTSSCEEEEEE-----ECE-EEETTCEEEEEEEC--
T ss_pred -ccchHHHHHhhc-------------cCCccEEEEEe-----cCc-eEcCCCEEEEEeCCCC
Confidence 234555555531 23699999999 677 9999999999987554
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=99.33 E-value=4.5e-12 Score=113.60 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=88.4
Q ss_pred CceeeeeHhHHHHHHHHhCC---CCCCCcccceEEEeCCCCCCCCCc--ceEEECCeEEEEeeeCCCcccCeeeCCCCCC
Q 021930 164 YPFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDTW--TEVRINKFTFQGVKLCSRCKIPTINQDTGDA 238 (305)
Q Consensus 164 ~P~llis~aSl~~l~~~l~~---~v~~~RFRpNIvI~g~~pf~Ed~W--~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~~ 238 (305)
..+++++.+|++.+++.++. .+++.+||-||+++|.. .++-| ++++||++.|+++.+|.+|...+.. +|.
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~~~~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG~avLeVTq~r~PC~~~~~~--~g~- 141 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLT--ESNVYMGDIFRWGEALIQVSQPRSPCYKLNYH--FDI- 141 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGGGGGCSTTTTCCSEEESSCC--TTTCBTTCEEEETTEEEEEEEECCCCTHHHHH--TTC-
T ss_pred CeEEECCHHHHHHHHHHhCCCcccCCcccccCCEEECCcc--hhhCCCCCEEEECCEEEEEEeCcCccHhHHHH--hcC-
Confidence 45999999999999998876 48999999999999974 44557 8999999999999999999988765 343
Q ss_pred CCChhHHHHHhhcccccCCCccccCccccceeeEEecccCCCCCCEEEeCCeEEEeEe
Q 021930 239 GPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKK 296 (305)
Q Consensus 239 ~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~g~~I~VGD~v~v~~~ 296 (305)
.+..+.+.+. ...|+|+.|. ++| .|++||.|+++++
T Consensus 142 -~~~~~~~~~~---------------~r~G~y~rVl-----~~G-~V~~GD~v~l~~r 177 (246)
T 1o65_A 142 -SDIAQLMQNT---------------GKVGWLYSVI-----APG-KVSADAPLELVSR 177 (246)
T ss_dssp -TTHHHHHHHH---------------TCCCEEEEEE-----ECE-EEETTSCEEEEEC
T ss_pred -cCHHHHHhhC---------------CCcEEEEEEe-----eCc-EEcCCCEEEEecC
Confidence 2455666553 2579999999 677 9999999999988
No 4
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=35.94 E-value=84 Score=26.36 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=39.2
Q ss_pred ceEEeeeeeecccCCCC--eeeeceeeeeccc-c----ccCceeEEEecCCceeeecC
Q 021930 4 AAKVKSIFVYPIKSCRG--ISVCQQAPLTPTG-F----RWDRQWMVINNNGRAYTQRN 54 (305)
Q Consensus 4 ~~~V~~L~iyPVKS~~g--~~v~~~~~l~~~G-l----~~DR~~~l~d~~g~~lt~r~ 54 (305)
-++=.+|++||-.+.+. -++ +.|++...| | -+||..++++.+|-.|+...
T Consensus 28 gG~TrEI~~~P~~~~~~F~wRi-SiA~V~~~g~FS~FpG~dR~l~lL~G~gl~L~~~g 84 (193)
T 3esg_A 28 GGSTEEITRDAGTGLEGFGWRL-SIADIGESGGFSSFAGYQRVITVIQGAGMVLTVDG 84 (193)
T ss_dssp SEEEEEEEECCCBTTTBCSEEE-EEEEECSSEECCCCTTCEEEEEEEESSCEEEEETT
T ss_pred CeEEEEEEEcCCCcCCCceEEE-EEEEEcCCCCCCCCCCceEEEEEEcCCcEEEEeCC
Confidence 45668999999875543 578 889999887 4 47999999998887777644
No 5
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=18.27 E-value=61 Score=23.74 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.8
Q ss_pred EEEeCCeEEEeEecC
Q 021930 284 VLKLGDPVFVLKKVT 298 (305)
Q Consensus 284 ~I~VGD~v~v~~~~~ 298 (305)
..++||.|.|.+.+|
T Consensus 49 ~~k~GD~V~I~E~RP 63 (89)
T 1qd7_I 49 EAKVGDIVKIMETRP 63 (89)
T ss_pred CCCCCCEEEEEEccc
Confidence 799999999988654
No 6
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=17.95 E-value=73 Score=22.33 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred ccceeeEEecc-c--CCCCCCEEEeCCeEEEeEecCC
Q 021930 266 YFGQNMVCKDN-L--TEGNGKVLKLGDPVFVLKKVTS 299 (305)
Q Consensus 266 ~fG~~~~~~~~-~--~~~~g~~I~VGD~v~v~~~~~~ 299 (305)
.|=+|.++.+- + .....-.++.||.|+|+++..+
T Consensus 4 ~~~~Y~v~aDy~p~~~~~~ei~lk~Gd~VeVl~k~~~ 40 (71)
T 1v1c_A 4 IFDIYVVTADYLPLGAEQDAITLREGQYVEVLDAAHP 40 (71)
T ss_dssp CCCEEEESSCBCCCSCCTTBCCBCTTCEEEEEEEEET
T ss_pred EeeEEEEEecccccCCCcceeeecCCCEEEEEEcCCC
Confidence 45666655431 1 1112235999999999987654
No 7
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=15.86 E-value=33 Score=19.33 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=7.6
Q ss_pred CCCcccceEE
Q 021930 186 PINRFRPNIL 195 (305)
Q Consensus 186 ~~~RFRpNIv 195 (305)
.++||||.+-
T Consensus 13 kirrfrpkvt 22 (31)
T 2gdl_A 13 KIRRFRPKVT 22 (31)
T ss_dssp SCCCCTTCCH
T ss_pred HHHhcCCceE
Confidence 4789999754
No 8
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=15.54 E-value=81 Score=17.04 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.0
Q ss_pred cCceeEEEecCCceeeec
Q 021930 36 WDRQWMVINNNGRAYTQR 53 (305)
Q Consensus 36 ~DR~~~l~d~~g~~lt~r 53 (305)
+.|.||+.|..++++.+.
T Consensus 1 hersymfsdlenrciaae 18 (26)
T 1n0x_P 1 HERSYMFSDLENRCIAAE 18 (26)
T ss_dssp CCCCEEEETTTTEEEECS
T ss_pred CcchhhhhHHHHHHHHHH
Confidence 468899999888887653
No 9
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=13.92 E-value=58 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=16.3
Q ss_pred cccccCceeEEEecCCcee
Q 021930 32 TGFRWDRQWMVINNNGRAY 50 (305)
Q Consensus 32 ~Gl~~DR~~~l~d~~g~~l 50 (305)
.|+.+.|.|.|+|++|+.+
T Consensus 3 ~~~~f~r~W~VIDA~g~~L 21 (206)
T 3iz5_K 3 SGSGVCAKRVVVDARHHML 21 (206)
T ss_dssp CSSSCCSSCCEEECTTBBH
T ss_pred cccccceeEEEEeCCCCch
Confidence 5788899999999998764
No 10
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=13.87 E-value=21 Score=23.45 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=20.6
Q ss_pred CCCCCCcceEEECCeEEEEeeeCCCcccCee
Q 021930 201 PFSEDTWTEVRINKFTFQGVKLCSRCKIPTI 231 (305)
Q Consensus 201 pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~v 231 (305)
.=.||.|+-.+-+...-=+.+.|.||-..--
T Consensus 6 ~~~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 6 SGSEDEWQCTECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp SCCSCCEECSSSCCEECSSCCBCTTTCCBCC
T ss_pred CCCcceeecccccccCCCccchhHHHHHhhc
Confidence 3468888766666444445778999976543
Done!