Your job contains 1 sequence.
>021931
MESLLHSTSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRSNKKKNNNDNNKEDSHSF
FSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKLYESLNIELESELNVERRRHY
EVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNF
ELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRAEMHGYDEEEDDID
YDDEEYDDEYDDGEGDEMDDNVDDDFEHGFSIVNVDDNEGEDSNDRSANISTIGRSNLRA
EKVSR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021931
(305 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086112 - symbol:RFC3 "REGULATOR OF FATTY-ACID... 617 3.7e-62 2
TIGR_CMR|CBU_0864 - symbol:CBU_0864 "ribosomal protein S6... 232 1.9e-19 1
TIGR_CMR|SO_3930 - symbol:SO_3930 "ribosomal protein S6" ... 216 9.5e-18 1
TIGR_CMR|CPS_0415 - symbol:CPS_0415 "ribosomal protein S6... 215 1.2e-17 1
UNIPROTKB|Q9KUZ2 - symbol:rpsF "30S ribosomal protein S6"... 208 6.7e-17 1
TIGR_CMR|VC_0366 - symbol:VC_0366 "ribosomal protein S6" ... 208 6.7e-17 1
UNIPROTKB|P02358 - symbol:rpsF species:83333 "Escherichia... 205 1.4e-16 1
TIGR_CMR|CHY_0035 - symbol:CHY_0035 "ribosomal protein S6... 186 1.4e-14 1
TIGR_CMR|GSU_0665 - symbol:GSU_0665 "ribosomal protein S6... 154 3.6e-11 1
TIGR_CMR|BA_5723 - symbol:BA_5723 "ribosomal protein S6" ... 150 1.1e-10 1
TIGR_CMR|DET_1046 - symbol:DET_1046 "ribosomal protein S6... 133 1.1e-08 1
TIGR_CMR|CJE_1213 - symbol:CJE_1213 "ribosomal protein S6... 127 5.4e-08 1
UNIPROTKB|P66591 - symbol:rpsF "30S ribosomal protein S6"... 115 1.3e-06 1
TIGR_CMR|ECH_0308 - symbol:ECH_0308 "ribosomal protein S6... 102 3.6e-05 1
TIGR_CMR|APH_0151 - symbol:APH_0151 "ribosomal protein S6... 98 0.00010 1
TIGR_CMR|NSE_0062 - symbol:NSE_0062 "ribosomal protein S6... 97 0.00013 1
TIGR_CMR|SPO_2281 - symbol:SPO_2281 "ribosomal protein S6... 95 0.00022 1
UNIPROTKB|Q5ZIJ2 - symbol:MRPS6 "28S ribosomal protein S6... 93 0.00036 1
ZFIN|ZDB-GENE-060825-59 - symbol:mrps6 "mitochondrial rib... 90 0.00078 1
>TAIR|locus:2086112 [details] [associations]
symbol:RFC3 "REGULATOR OF FATTY-ACID COMPOSITION 3"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0019243 "methylglyoxal catabolic
process to D-lactate" evidence=RCA] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250 EMBL:CP002686
GO:GO:0005840 GO:GO:0003746 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
TIGRFAMs:TIGR00166 EMBL:AY074580 EMBL:AY101540 EMBL:AB057424
IPI:IPI00525662 RefSeq:NP_566568.1 UniGene:At.48673
UniGene:At.71146 ProteinModelPortal:Q948R9 SMR:Q948R9 STRING:Q948R9
PRIDE:Q948R9 EnsemblPlants:AT3G17170.1 GeneID:820974
KEGG:ath:AT3G17170 TAIR:At3g17170 InParanoid:Q948R9 OMA:IRHLVMK
PhylomeDB:Q948R9 ProtClustDB:CLSN2688474 Genevestigator:Q948R9
Uniprot:Q948R9
Length = 314
Score = 617 (222.3 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 123/230 (53%), Positives = 161/230 (70%)
Query: 1 MESLLH-STSATYLVPKFPKLITYNQNSCLAFARNSVIVGAKRS--XXXXXXXXXXXEDS 57
MESLLH S+S L P+ ++ S + + G+K +D+
Sbjct: 1 MESLLHASSSLVSLRPRIDGRDSFINPSRVCLNPSLGRRGSKPLPLVAAAKKKKSKKDDN 60
Query: 58 HSFFSKADEDNLFFPEAVLLKEKKVQEDGRALPEFADDEEEKXXXXXXXXXXXXXXVERR 117
H+F ++ DE FPE++LLKEKK+ E+G LPEFAD EE++ ER
Sbjct: 61 HNFSARPDEATGPFPESILLKEKKIDEEGDLLPEFADAEEKELYQFLDLQLQSDLNEERM 120
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
RHYEVVYLIHEK+ E+V S+N+KVQD+L+EKKG+VWR +DWG+RRLAYKIQKA+ AHYIL
Sbjct: 121 RHYEVVYLIHEKHAEEVESINQKVQDYLKEKKGKVWRFSDWGMRRLAYKIQKAENAHYIL 180
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCPPPPEFHTLRA 227
MNFE+EAK++N+FK +LD DE+VIRHLV+KRD+AITEDCPPPPEFH++RA
Sbjct: 181 MNFEIEAKYLNEFKGLLDSDERVIRHLVMKRDEAITEDCPPPPEFHSVRA 230
Score = 36 (17.7 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 276 DDNEGEDSND 285
D+ EGED D
Sbjct: 248 DEGEGEDEED 257
>TIGR_CMR|CBU_0864 [details] [associations]
symbol:CBU_0864 "ribosomal protein S6" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00360 InterPro:IPR000529
InterPro:IPR020814 Pfam:PF01250 PROSITE:PS01048 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040438 OMA:ITEASPM RefSeq:NP_819883.1
ProteinModelPortal:Q83D76 SMR:Q83D76 PRIDE:Q83D76 GeneID:1208757
KEGG:cbu:CBU_0864 PATRIC:17930425
BioCyc:CBUR227377:GJ7S-858-MONOMER Uniprot:Q83D76
Length = 127
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 44/97 (45%), Positives = 63/97 (64%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
RHYE+V L+H V ++ E+ Q ++EK G+V RL DWG R+LAY I K KAHY+L
Sbjct: 2 RHYEIVILVHPDQSSQVPAMVERYQSMIKEKDGKVHRLEDWGRRQLAYSIDKVHKAHYLL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
MN E + I++ + ++ VIR L++KRD AIT+
Sbjct: 62 MNIESDQGVISELENAFRYNDAVIRSLILKRDHAITK 98
>TIGR_CMR|SO_3930 [details] [associations]
symbol:SO_3930 "ribosomal protein S6" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
PROSITE:PS01048 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040438 OMA:ITEASPM RefSeq:NP_719461.1
ProteinModelPortal:Q8EAH2 SMR:Q8EAH2 PRIDE:Q8EAH2 GeneID:1171569
KEGG:son:SO_3930 PATRIC:23527540 Uniprot:Q8EAH2
Length = 131
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 41/100 (41%), Positives = 62/100 (62%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
RHYE+V+++H E V + E+ + E G++ RL DWG R+LAY IQ KAHY+L
Sbjct: 2 RHYEIVFMVHPDQSEQVPGMIERYTGAITEANGKIHRLEDWGRRQLAYPIQDLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
MN E A+ I + +T ++ V+R++V++ AITE P
Sbjct: 62 MNVEAPAETIEELETAFRFNDAVLRNMVMRTKGAITEASP 101
>TIGR_CMR|CPS_0415 [details] [associations]
symbol:CPS_0415 "ribosomal protein S6" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 InterPro:IPR020815
Pfam:PF01250 PROSITE:PS01048 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
RefSeq:YP_267173.1 ProteinModelPortal:Q489U1 SMR:Q489U1
STRING:Q489U1 PRIDE:Q489U1 GeneID:3522469 KEGG:cps:CPS_0415
PATRIC:21464191 HOGENOM:HOG000040438 OMA:ITEASPM
BioCyc:CPSY167879:GI48-510-MONOMER Uniprot:Q489U1
Length = 143
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 38/100 (38%), Positives = 62/100 (62%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
RHYE+V+++H E V + ++ D + +G++ RL DWG R+LAY I K KAHY+L
Sbjct: 2 RHYEIVFMVHPDQSEQVSGMIQRYTDLINAAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
MN E I++ +T ++ VIR+++++ A+TE P
Sbjct: 62 MNIEAPQVVIDELETAFRYNDVVIRNMIMRTKDAVTEASP 101
>UNIPROTKB|Q9KUZ2 [details] [associations]
symbol:rpsF "30S ribosomal protein S6" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_00360 InterPro:IPR000529
InterPro:IPR020814 InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717
SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453
TIGRFAMs:TIGR00166 OMA:ITEASPM PIR:H82332 RefSeq:NP_230020.1
ProteinModelPortal:Q9KUZ2 SMR:Q9KUZ2 PRIDE:Q9KUZ2 DNASU:2615045
GeneID:2615045 KEGG:vch:VC0366 PATRIC:20079803 Uniprot:Q9KUZ2
Length = 122
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 37/97 (38%), Positives = 61/97 (62%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
RHYE+V+++H E V + E+ + E G++ RL DWG R+LAY I K KAHY+L
Sbjct: 2 RHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
MN E + +++ +T ++ V+R+++++ AITE
Sbjct: 62 MNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITE 98
>TIGR_CMR|VC_0366 [details] [associations]
symbol:VC_0366 "ribosomal protein S6" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
OMA:ITEASPM PIR:H82332 RefSeq:NP_230020.1 ProteinModelPortal:Q9KUZ2
SMR:Q9KUZ2 PRIDE:Q9KUZ2 DNASU:2615045 GeneID:2615045
KEGG:vch:VC0366 PATRIC:20079803 Uniprot:Q9KUZ2
Length = 122
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 37/97 (38%), Positives = 61/97 (62%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
RHYE+V+++H E V + E+ + E G++ RL DWG R+LAY I K KAHY+L
Sbjct: 2 RHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITE 214
MN E + +++ +T ++ V+R+++++ AITE
Sbjct: 62 MNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITE 98
>UNIPROTKB|P02358 [details] [associations]
symbol:rpsF species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0003735 EMBL:U14003 GO:GO:0019843 PDB:3J00
PDBsum:3J00 Gene3D:3.30.70.60 InterPro:IPR014717 PDB:3FIH PDB:3IZV
PDB:3IZW PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627
EMBL:X04022 PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ PDB:1EG0
PDBsum:1EG0 SUPFAM:SSF54995 PDB:4GAS PDB:4GD1 PDBsum:4GAS
PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY
PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN
PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU
PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR
PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M
PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V
PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ
PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY
PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL
PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3
PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q
PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V
PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13 PDBsum:3J18
PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB
PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9
PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040438 OMA:ITEASPM PIR:C65231 RefSeq:NP_418621.5
RefSeq:YP_492342.1 ProteinModelPortal:P02358 SMR:P02358
DIP:DIP-10782N IntAct:P02358 MINT:MINT-1279331 SWISS-2DPAGE:P02358
PaxDb:P02358 PRIDE:P02358 EnsemblBacteria:EBESCT00000004456
EnsemblBacteria:EBESCT00000017509 GeneID:12930647 GeneID:948723
KEGG:ecj:Y75_p4086 KEGG:eco:b4200 PATRIC:48667972 EchoBASE:EB0898
EcoGene:EG10905 BioCyc:EcoCyc:EG10905-MONOMER
BioCyc:ECOL316407:JW4158-MONOMER EvolutionaryTrace:P02358
Genevestigator:P02358 Uniprot:P02358
Length = 135
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 39/100 (39%), Positives = 61/100 (61%)
Query: 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYIL 177
RHYE+V+++H E V + E+ + +G++ RL DWG R+LAY I K KAHY+L
Sbjct: 2 RHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVL 61
Query: 178 MNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
MN E + I++ +T ++ VIR +V++ A+TE P
Sbjct: 62 MNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASP 101
>TIGR_CMR|CHY_0035 [details] [associations]
symbol:CHY_0035 "ribosomal protein S6" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
Pfam:PF01250 PROSITE:PS01048 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040440 OMA:MVESKDW RefSeq:YP_358907.1
ProteinModelPortal:Q3AG27 STRING:Q3AG27 GeneID:3726848
KEGG:chy:CHY_0035 PATRIC:21273267 BioCyc:CHYD246194:GJCN-35-MONOMER
Uniprot:Q3AG27
Length = 96
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 32/94 (34%), Positives = 62/94 (65%)
Query: 118 RHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
R YEV+Y++H + + E S+ E+ + + ++ G V +++ WG RR AY+I+K ++ +Y+
Sbjct: 3 RQYEVMYILHPELDAEKTESIIERFKGMIEQEGGEVTKIDRWGKRRFAYEIKKLREGYYV 62
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
+MNF+ +A+ + +L + V+RH+VI+ DK
Sbjct: 63 VMNFKAKAETAQELDRLLRISDDVVRHIVIREDK 96
>TIGR_CMR|GSU_0665 [details] [associations]
symbol:GSU_0665 "ribosomal protein S6" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250 PROSITE:PS01048
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717
SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453
TIGRFAMs:TIGR00166 HOGENOM:HOG000040440 OMA:MVESKDW
RefSeq:NP_951722.1 ProteinModelPortal:Q74FE4 GeneID:2685562
KEGG:gsu:GSU0665 PATRIC:22024089 BioCyc:GSUL243231:GH27-684-MONOMER
Uniprot:Q74FE4
Length = 117
Score = 154 (59.3 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 31/101 (30%), Positives = 57/101 (56%)
Query: 118 RHYEVVYLIH-EKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
R YE + ++ E ++++ + KV D + KG + RL DWG+R+LAY ++K+ + Y
Sbjct: 3 RMYETIVIVQPELGDDELKGLTAKVTDIIGSFKGVLHRLEDWGVRKLAYPVKKSVRGRYY 62
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDCP 217
+ F+ +A I + + L D+KV+R+ +K +K P
Sbjct: 63 YVRFDGDAPLIAELERRLRLDDKVLRYQSVKLEKEAAAPAP 103
>TIGR_CMR|BA_5723 [details] [associations]
symbol:BA_5723 "ribosomal protein S6" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.70.60
InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990
ProtClustDB:PRK00453 TIGRFAMs:TIGR00166 RefSeq:NP_847869.1
RefSeq:YP_022409.1 RefSeq:YP_031564.1 PDB:3R3T PDBsum:3R3T
ProteinModelPortal:Q81JI2 DNASU:1085492
EnsemblBacteria:EBBACT00000011912 EnsemblBacteria:EBBACT00000018310
EnsemblBacteria:EBBACT00000024101 GeneID:1085492 GeneID:2815999
GeneID:2848522 KEGG:ban:BA_5723 KEGG:bar:GBAA_5723 KEGG:bat:BAS5327
HOGENOM:HOG000040440 OMA:RKYEVMY
BioCyc:BANT260799:GJAJ-5404-MONOMER
BioCyc:BANT261594:GJ7F-5580-MONOMER Uniprot:Q81JI2
Length = 96
Score = 150 (57.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 28/94 (29%), Positives = 53/94 (56%)
Query: 118 RHYEVVYLIHEKYEEDVG-SVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
R YE++Y+I EE+ ++ E+ L + +WG RRLAY+I ++ Y+
Sbjct: 2 RKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYM 61
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
++N A+ IN+F + +E ++RH+V+K ++
Sbjct: 62 ILNVNANAEAINEFDRLAKINEDILRHIVVKEEE 95
>TIGR_CMR|DET_1046 [details] [associations]
symbol:DET_1046 "ribosomal protein S6" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
PROSITE:PS01048 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040440 RefSeq:YP_181762.1 ProteinModelPortal:Q3Z7N7
STRING:Q3Z7N7 GeneID:3229652 KEGG:det:DET1046 PATRIC:21609141
OMA:YPIREYV BioCyc:DETH243164:GJNF-1047-MONOMER Uniprot:Q3Z7N7
Length = 109
Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/98 (32%), Positives = 50/98 (51%)
Query: 114 VERRRHYE-VVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKK 172
VE R YE VV L + +E V ++ E + + EK G +N WG R+LAY I + +
Sbjct: 11 VENLRDYELVVILTTDTPKEKVEAILEGISKTIAEKDGSFTEVNHWGKRKLAYLIGRYGE 70
Query: 173 AHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
+Y+ + + + I L E+VIRH+ I D+
Sbjct: 71 GYYVFIKMKAKPSSIRKINADLRISEQVIRHMAINMDE 108
>TIGR_CMR|CJE_1213 [details] [associations]
symbol:CJE_1213 "ribosomal protein S6" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
Pfam:PF01250 PROSITE:PS01048 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040440 RefSeq:YP_179201.1 ProteinModelPortal:Q5HU34
STRING:Q5HU34 GeneID:3231720 KEGG:cjr:CJE1213 PATRIC:20044222
OMA:MVESKDW BioCyc:CJEJ195099:GJC0-1239-MONOMER Uniprot:Q5HU34
Length = 125
Score = 127 (49.8 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 118 RHYEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
+HYEV++++ EE+V + E V++ L + + + G R+LAYKI+K ++ Y
Sbjct: 2 KHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMGTRKLAYKIKKYERGTYF 61
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIK 207
++ F+ I + + +L E+VIR L++K
Sbjct: 62 VIYFKAPTNLIAELERVLRITEEVIRFLIVK 92
>UNIPROTKB|P66591 [details] [associations]
symbol:rpsF "30S ribosomal protein S6" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 InterPro:IPR020815
Pfam:PF01250 PROSITE:PS01048 GO:GO:0005886 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 EMBL:BX842572 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040440 PIR:E70913 RefSeq:NP_214567.1
RefSeq:NP_334467.1 RefSeq:YP_006513367.1 ProteinModelPortal:P66591
SMR:P66591 PRIDE:P66591 EnsemblBacteria:EBMYCT00000000594
EnsemblBacteria:EBMYCT00000069863 GeneID:13316031 GeneID:887020
GeneID:922720 KEGG:mtc:MT0059 KEGG:mtu:Rv0053 KEGG:mtv:RVBD_0053
PATRIC:18121851 TubercuList:Rv0053 OMA:MRRYEVM Uniprot:P66591
Length = 96
Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/94 (27%), Positives = 52/94 (55%)
Query: 118 RHYEVVYLIHEKYEE-DVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
R YE++ ++ +E V E + +R+ G+V +++ WG RRLAY+I K + Y+
Sbjct: 2 RPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYV 61
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
+++ + +++ L +E V+R V++ DK
Sbjct: 62 VIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
>TIGR_CMR|ECH_0308 [details] [associations]
symbol:ECH_0308 "ribosomal protein S6" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
PROSITE:PS01048 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
HOGENOM:HOG000040439 KO:K02990 ProtClustDB:PRK00453
TIGRFAMs:TIGR00166 RefSeq:YP_507129.1 ProteinModelPortal:Q2GHF4
STRING:Q2GHF4 GeneID:3927658 KEGG:ech:ECH_0308 PATRIC:20576121
OMA:LMNIECN BioCyc:ECHA205920:GJNR-308-MONOMER Uniprot:Q2GHF4
Length = 109
Score = 102 (41.0 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 120 YEVVYLIHE---KYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
YE ++ + +YE + G V + + L + + + WGL AY I K K HY
Sbjct: 4 YEFTFIAQQGLTQYELE-GLV-KGLSSLLTKNGAELLKYEYWGLLDFAYTIDKMNKGHYC 61
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
++ + +++FK + +E ++R L +K+DK
Sbjct: 62 MIYIKATPSSMDEFKRKVRLNEDILRFLCLKKDK 95
>TIGR_CMR|APH_0151 [details] [associations]
symbol:APH_0151 "ribosomal protein S6" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250 PROSITE:PS01048
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0019843 Gene3D:3.30.70.60
InterPro:IPR014717 SUPFAM:SSF54995 RefSeq:YP_504775.1
ProteinModelPortal:Q2GLH6 STRING:Q2GLH6 GeneID:3930237
KEGG:aph:APH_0151 PATRIC:20948870 eggNOG:COG0360
HOGENOM:HOG000040439 KO:K02990 OMA:PSHIYEC ProtClustDB:PRK00453
BioCyc:APHA212042:GHPM-186-MONOMER TIGRFAMs:TIGR00166
Uniprot:Q2GLH6
Length = 109
Score = 98 (39.6 bits), Expect = 0.00010, P = 0.00010
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 120 YEVVYLIHEKYEE-DVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILM 178
YE ++ + + ++ +++ + L + + + WGL Y I K K HY +M
Sbjct: 4 YEFAFIAQQGLTQYELEGLSKGLTALLVKMGAELVKYEYWGLLDFVYSIAKNNKGHYCMM 63
Query: 179 NFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
E +++FK + +E V+R L +K DK
Sbjct: 64 YIRAEPAAMDEFKRKVKLNEDVLRFLCLKVDK 95
>TIGR_CMR|NSE_0062 [details] [associations]
symbol:NSE_0062 "ribosomal protein S6" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.30.70.60
InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990
OMA:PSHIYEC TIGRFAMs:TIGR00166 RefSeq:YP_505963.1
ProteinModelPortal:Q2GEY3 STRING:Q2GEY3 GeneID:3931902
KEGG:nse:NSE_0062 PATRIC:22680239 HOGENOM:HOG000127370
ProtClustDB:CLSK2527701 BioCyc:NSEN222891:GHFU-99-MONOMER
Uniprot:Q2GEY3
Length = 114
Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 120 YEVVYLIHEKYEEDVGSVNEKVQDF---LREKKGRVWRLNDWGLRRLAYKIQKAKKAHYI 176
YE V+L E G V+ + +F E +V R +WG LAY+++ KA+Y
Sbjct: 6 YECVFLASSSLSE--GGVSNLMDNFNAAFAENSIKVLRQENWGSLALAYRVKNHTKANYF 63
Query: 177 LMNFELEAKWINDFKTMLDKDEKVIRHLVIKR 208
+ E + F+ L ++ V+R+L+ ++
Sbjct: 64 MFVISAEPLALQKFEAKLKYNDLVLRYLLQRK 95
>TIGR_CMR|SPO_2281 [details] [associations]
symbol:SPO_2281 "ribosomal protein S6" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
PROSITE:PS01048 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
HOGENOM:HOG000040439 KO:K02990 ProtClustDB:PRK00453
TIGRFAMs:TIGR00166 OMA:ITEASPM RefSeq:YP_167505.1
ProteinModelPortal:Q5LR50 GeneID:3194317 KEGG:sil:SPO2281
PATRIC:23377917 Uniprot:Q5LR50
Length = 117
Score = 95 (38.5 bits), Expect = 0.00022, P = 0.00022
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 158 WGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDK 210
WG++ +AYKI K +K HY + + A + + + ++ + V+R L IK D+
Sbjct: 43 WGVKTMAYKINKNRKGHYAFLRTDAPASAVQEMERLMRLHDDVMRVLTIKVDE 95
>UNIPROTKB|Q5ZIJ2 [details] [associations]
symbol:MRPS6 "28S ribosomal protein S6, mitochondrial"
species:9031 "Gallus gallus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000529 Pfam:PF01250 PROSITE:PS01048 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
TIGRFAMs:TIGR00166 CTD:64968 HOVERGEN:HBG082699 EMBL:AJ720792
IPI:IPI00583142 RefSeq:NP_001026657.1 UniGene:Gga.5347
ProteinModelPortal:Q5ZIJ2 GeneID:427978 KEGG:gga:427978
eggNOG:NOG283928 HOGENOM:HOG000045806 InParanoid:Q5ZIJ2
OrthoDB:EOG4VHK7T NextBio:20829091 Uniprot:Q5ZIJ2
Length = 121
Score = 93 (37.8 bits), Expect = 0.00036, P = 0.00036
Identities = 27/101 (26%), Positives = 45/101 (44%)
Query: 120 YEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAH----Y 175
YE+ ++ + +V ++ + L E+ V L + G R L YKI K H Y
Sbjct: 4 YELALILKAMQRPETAAVLKRTVEALMERGAIVRNLENLGERALPYKISKHNHRHRRGGY 63
Query: 176 ILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKAITEDC 216
L++ E ++ L +D +IR IK + TE+C
Sbjct: 64 FLVDLEGPPSIVSTMMDHLGRDIDIIRRAFIKYPVSKTEEC 104
>ZFIN|ZDB-GENE-060825-59 [details] [associations]
symbol:mrps6 "mitochondrial ribosomal protein S6"
species:7955 "Danio rerio" [GO:0005840 "ribosome" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000529 Pfam:PF01250
ZFIN:ZDB-GENE-060825-59 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
TIGRFAMs:TIGR00166 CTD:64968 HOVERGEN:HBG082699 EMBL:BC122263
IPI:IPI00898455 RefSeq:NP_001038921.1 UniGene:Dr.154204
ProteinModelPortal:Q0P459 GeneID:751746 KEGG:dre:751746
InParanoid:Q0P459 NextBio:20917885 ArrayExpress:Q0P459
Uniprot:Q0P459
Length = 118
Score = 90 (36.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 120 YEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQK--AKKAH--Y 175
YE+ ++ + +V + + L E+ V L + G R+L YKI K ++++H Y
Sbjct: 4 YELYMVLKAMQRPETAAVLRRTVETLFERGAVVRSLENLGERKLPYKISKHDSRQSHGGY 63
Query: 176 ILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRD 209
++F ++ L++D V+R V+K+D
Sbjct: 64 FSIDFHASPNIVSGLLNHLERDVDVLRPTVVKKD 97
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 305 243 0.00097 113 3 11 22 0.45 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 604 (64 KB)
Total size of DFA: 192 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.75u 0.12s 21.87t Elapsed: 00:00:01
Total cpu time: 21.75u 0.12s 21.87t Elapsed: 00:00:01
Start: Fri May 10 20:35:29 2013 End: Fri May 10 20:35:30 2013