Query 021931
Match_columns 305
No_of_seqs 120 out of 1166
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cqm_A Ribosomal protein S6; a 100.0 6E-32 2.1E-36 217.1 11.9 99 117-215 1-100 (101)
2 3i1m_F 30S ribosomal protein S 100.0 9.3E-33 3.2E-37 233.9 7.3 107 117-223 1-107 (135)
3 3r8n_F 30S ribosomal protein S 100.0 1.6E-32 5.5E-37 220.3 4.4 100 117-216 1-100 (100)
4 2j5a_A 30S ribosomal protein S 100.0 1E-30 3.5E-35 213.2 12.4 99 116-214 6-106 (110)
5 3r3t_A 30S ribosomal protein S 100.0 1.4E-31 4.7E-36 214.5 -0.9 96 115-210 2-98 (99)
6 1vmb_A 30S ribosomal protein S 100.0 1.7E-30 6E-35 221.2 5.6 109 112-220 13-123 (140)
7 3bbn_F Ribosomal protein S6; s 99.9 4.7E-28 1.6E-32 212.3 8.5 96 116-211 61-166 (168)
8 2kjw_A TS9, 30S ribosomal prot 99.6 1.2E-16 4.1E-21 128.7 3.6 58 112-169 38-96 (96)
9 3zzp_A TS9, ribosomal protein 99.0 2.1E-10 7.1E-15 88.8 4.3 42 170-211 2-43 (77)
10 2kjw_A TS9, 30S ribosomal prot 98.7 2.7E-09 9.3E-14 85.8 1.4 40 170-209 2-41 (96)
11 3zzp_A TS9, ribosomal protein 97.9 7.1E-06 2.4E-10 63.3 3.7 38 113-150 39-77 (77)
12 2ca6_A RAN GTPase-activating p 74.6 0.81 2.8E-05 41.2 0.7 6 201-206 305-310 (386)
13 4fp9_B Mterf domain-containing 58.8 2 6.9E-05 40.6 0.0 21 241-261 305-325 (335)
14 2ayu_A Nucleosome assembly pro 35.8 2.6 8.9E-05 41.3 -3.3 11 119-129 228-240 (417)
15 2ayu_A Nucleosome assembly pro 31.4 10 0.00034 37.2 0.0 10 171-180 226-235 (417)
16 2kje_B Early E1A 32 kDa protei 29.4 10 0.00035 26.4 -0.2 14 67-80 13-26 (42)
17 2id1_A Hypothetical protein; a 23.6 2.2E+02 0.0075 23.5 6.8 66 117-194 31-104 (130)
18 2byk_A Chrac-16; nucleosome sl 23.0 21 0.00072 29.9 0.5 8 220-227 103-110 (140)
19 1u8s_A Glycine cleavage system 22.4 2.8E+02 0.0095 22.7 7.4 61 119-194 6-66 (192)
20 3lo3_A Uncharacterized conserv 21.4 1.4E+02 0.0049 22.6 4.9 66 116-187 2-67 (94)
21 2o5a_A BH1328 protein; BHR21, 20.8 1E+02 0.0034 25.3 4.2 51 118-180 32-82 (125)
No 1
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.97 E-value=6e-32 Score=217.05 Aligned_cols=99 Identities=26% Similarity=0.414 Sum_probs=94.1
Q ss_pred CcCcceEEEecCCC-hHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhC
Q 021931 117 RRHYEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLD 195 (305)
Q Consensus 117 MR~YEimlILrP~l-eEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~Lr 195 (305)
||+||+|+|++|++ +++++++++++.++|.++||+|+++++||+|+|||+|+|+++|+|++|+|.++|+++++|++.|+
T Consensus 1 M~~YE~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr 80 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR 80 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhc
Confidence 89999999999997 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEeecCCCCCC
Q 021931 196 KDEKVIRHLVIKRDKAITED 215 (305)
Q Consensus 196 LDE~VLR~LIVK~ek~i~e~ 215 (305)
+|++|||||++|++++.+++
T Consensus 81 ~~~~VlR~l~vk~~~~~~~~ 100 (101)
T 1cqm_A 81 IRDNVRRVMVVKSQEPFLAN 100 (101)
T ss_dssp TSTTEEEEEEEECSSCCC--
T ss_pred CCcceEEEEEEEecccccCC
Confidence 99999999999999877654
No 2
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.97 E-value=9.3e-33 Score=233.86 Aligned_cols=107 Identities=36% Similarity=0.661 Sum_probs=98.8
Q ss_pred CcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhCC
Q 021931 117 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK 196 (305)
Q Consensus 117 MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~LrL 196 (305)
||+||+|||++|+++++++++++++.++|.++||+|+++++||+|+|||+|+|+++|||++|+|.++|++|++|++.|++
T Consensus 1 Mr~YE~~~Il~P~~~e~v~~~ve~~~~~I~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~i~ELer~lri 80 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF 80 (135)
T ss_dssp CCEECBEEEECSTTTTSHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEEECCEECCTTHHHHHHHHHHH
T ss_pred CCceEEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeeccccCceEcCCCCeEEEEEEEEEeCHHHHHHHHHHhcC
Confidence 89999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCCCcc
Q 021931 197 DEKVIRHLVIKRDKAITEDCPPPPEFH 223 (305)
Q Consensus 197 DE~VLR~LIVK~ek~i~e~~p~~~ef~ 223 (305)
|++||||||||+++..+++||+.+...
T Consensus 81 ~e~VLR~livk~d~~~~~~s~~~~~~~ 107 (135)
T 3i1m_F 81 NDAVIRSMVMRTKHAVTEASPMVKAKD 107 (135)
T ss_dssp CSSEESCCBCCCSSCCCSCC-------
T ss_pred CCCeEEEEEEEeccCccCCChhhhhhh
Confidence 999999999999999999999986654
No 3
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=99.97 E-value=1.6e-32 Score=220.31 Aligned_cols=100 Identities=38% Similarity=0.707 Sum_probs=97.2
Q ss_pred CcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHhCC
Q 021931 117 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK 196 (305)
Q Consensus 117 MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~LrL 196 (305)
||+||+|+|++|+++++++++++++.++|.++||+|+++++||+|+|||+|+|+++|+|++|+|.++|+++++|++.|++
T Consensus 1 M~~YE~~~Il~p~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~ 80 (100)
T 3r8n_F 1 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF 80 (100)
T ss_dssp CEEECCCCEECGGGTTHHHHHHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSCSCEEEEECCEEECTTTTHHHHHHHHH
T ss_pred CCceEEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCCCEEEEEEEEEEeChHHHHHHHHHhcC
Confidence 89999999999998788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEeecCCCCCCC
Q 021931 197 DEKVIRHLVIKRDKAITEDC 216 (305)
Q Consensus 197 DE~VLR~LIVK~ek~i~e~~ 216 (305)
|++|||||++|+++++++++
T Consensus 81 ~~~VlR~livk~~~~~~~~s 100 (100)
T 3r8n_F 81 NDAVIRSMVMRTKHAVTEAS 100 (100)
T ss_dssp CTTEEECCCCCCSSCCCCCC
T ss_pred CCCeEEEEEEEeCccccCCC
Confidence 99999999999999888764
No 4
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=99.97 E-value=1e-30 Score=213.21 Aligned_cols=99 Identities=33% Similarity=0.591 Sum_probs=94.2
Q ss_pred cCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEe-CcchHHHHHHH
Q 021931 116 RRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFEL-EAKWINDFKTM 193 (305)
Q Consensus 116 ~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea-~psaIkELer~ 193 (305)
.|++||+|||++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|+++|+|++|+|.+ +|++|++|++.
T Consensus 6 ~M~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~ 85 (110)
T 2j5a_A 6 TLRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQ 85 (110)
T ss_dssp SCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHH
T ss_pred CCCcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHH
Confidence 5999999999999975 589999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hCCCCCeeEEEEEeecCCCCC
Q 021931 194 LDKDEKVIRHLVIKRDKAITE 214 (305)
Q Consensus 194 LrLDE~VLR~LIVK~ek~i~e 214 (305)
|++|++|||||++|+++....
T Consensus 86 lr~~e~VlR~livk~~~~~~~ 106 (110)
T 2j5a_A 86 LKIDEDVIRWLNIQIKESEVK 106 (110)
T ss_dssp HHHCTTEEEEEEEEECGGGCC
T ss_pred hCCCcCeEEEEEEEccccccc
Confidence 999999999999999866543
No 5
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=99.96 E-value=1.4e-31 Score=214.53 Aligned_cols=96 Identities=29% Similarity=0.635 Sum_probs=91.6
Q ss_pred ccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHH
Q 021931 115 ERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTM 193 (305)
Q Consensus 115 ~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~ 193 (305)
++||+||+|+|++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|+++|+|++|+|.|+|+++++|++.
T Consensus 2 ~~M~~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~ 81 (99)
T 3r3t_A 2 NAMRKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYMILNVNANAEAINEFDRL 81 (99)
T ss_dssp -CCCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCSCCCCCCCCCCHHHHHHHHHH
T ss_pred CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeeccccCcCcCCCCEEEEEEEEEEeCHHHHHHHHHH
Confidence 47999999999999985 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCeeEEEEEeecC
Q 021931 194 LDKDEKVIRHLVIKRDK 210 (305)
Q Consensus 194 LrLDE~VLR~LIVK~ek 210 (305)
|++|++|||||++|+++
T Consensus 82 lr~~~~VlR~livk~~~ 98 (99)
T 3r3t_A 82 AKINEDILRHIVVKEEE 98 (99)
T ss_dssp HHHCTTCCCCCCCCCC-
T ss_pred hcCCCCeEEEEEEEecC
Confidence 99999999999999875
No 6
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.96 E-value=1.7e-30 Score=221.24 Aligned_cols=109 Identities=19% Similarity=0.444 Sum_probs=98.2
Q ss_pred hccccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhC-CCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHH
Q 021931 112 LNVERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREK-KGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWIND 189 (305)
Q Consensus 112 ~~~~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~-GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkE 189 (305)
+-...||+||+|||++|+++ ++++++++++.++|.++ ||+|+++++||+|+|||+|+|+++|+|++|+|.++|++|++
T Consensus 13 ~~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Yvl~~f~a~~~~i~E 92 (140)
T 1vmb_A 13 MAYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQE 92 (140)
T ss_dssp ----CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSTHH
T ss_pred ccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccccccCCCCEEEEEEEEEEECHHHHHH
Confidence 34567999999999999975 58999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCeeEEEEEeecCCCCCCCCCCC
Q 021931 190 FKTMLDKDEKVIRHLVIKRDKAITEDCPPPP 220 (305)
Q Consensus 190 Ler~LrLDE~VLR~LIVK~ek~i~e~~p~~~ 220 (305)
|++.|++|++||||||||+++...++++++.
T Consensus 93 Ler~lri~e~VLR~livK~~~~~~~~s~~~~ 123 (140)
T 1vmb_A 93 LENFYRVTPEIIRWQTFRRFDLEKKERKAQR 123 (140)
T ss_dssp HHHHHHTCTTEEEEEEEECHHHHHHHHHHHC
T ss_pred HHHHhcCCcceeEEEEEEecccccchhhhhc
Confidence 9999999999999999999987665555443
No 7
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=4.7e-28 Score=212.27 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=91.2
Q ss_pred cCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCC---------eEEEEEEEEEeCcc
Q 021931 116 RRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAK---------KAHYILMNFELEAK 185 (305)
Q Consensus 116 ~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~k---------eG~Yvlm~Fea~ps 185 (305)
.||+||+|+|++|+++ ++++++++++.++|.++||+|+++++||+|+|||+|+|++ +|+|++|+|.++|+
T Consensus 61 ~Mr~YE~m~IlrPdl~eeev~alver~~~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yvlm~F~a~p~ 140 (168)
T 3bbn_F 61 GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPE 140 (168)
T ss_dssp -CEEEEEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTT
T ss_pred CCCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEEEEEEEeCHH
Confidence 4999999999999974 5899999999999999999999999999999999999998 79999999999999
Q ss_pred hHHHHHHHhCCCCCeeEEEEEeecCC
Q 021931 186 WINDFKTMLDKDEKVIRHLVIKRDKA 211 (305)
Q Consensus 186 aIkELer~LrLDE~VLR~LIVK~ek~ 211 (305)
+|++|++.|++|++||||||||+++.
T Consensus 141 ~I~ELeR~Lride~VLR~liVK~d~~ 166 (168)
T 3bbn_F 141 SISPLEAALVTDDDVIRSSSFKIRKR 166 (168)
T ss_dssp SSHHHHHHHHTSSCCSEEECCBCCSC
T ss_pred HHHHHHHHhcCCcCeeEEEEEecccc
Confidence 99999999999999999999998853
No 8
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=99.62 E-value=1.2e-16 Score=128.68 Aligned_cols=58 Identities=29% Similarity=0.455 Sum_probs=54.1
Q ss_pred hccccCcCcceEEEecCCCh-HhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCC
Q 021931 112 LNVERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQK 169 (305)
Q Consensus 112 ~~~~~MR~YEimlILrP~le-EEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK 169 (305)
+.+++|++||+|||++|+++ ++++++++++.++|+++||+|.++++||+|+|||+|+|
T Consensus 38 v~~e~Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~WG~R~LAY~I~K 96 (96)
T 2kjw_A 38 VASTTPGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK 96 (96)
T ss_dssp EECSSSSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred eehhhhhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccccccccccCCC
Confidence 35677999999999999985 57999999999999999999999999999999999997
No 9
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=99.00 E-value=2.1e-10 Score=88.77 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCeEEEEEEEEEeCcchHHHHHHHhCCCCCeeEEEEEeecCC
Q 021931 170 AKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKA 211 (305)
Q Consensus 170 ~keG~Yvlm~Fea~psaIkELer~LrLDE~VLR~LIVK~ek~ 211 (305)
+++|||++|+|.|+|++|++|++.|+++++|||||++|.+++
T Consensus 2 k~~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~ 43 (77)
T 3zzp_A 2 DPQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP 43 (77)
T ss_dssp --CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSST
T ss_pred CceEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCC
Confidence 478999999999999999999999999999999999999875
No 10
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=98.71 E-value=2.7e-09 Score=85.81 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=38.9
Q ss_pred CCeEEEEEEEEEeCcchHHHHHHHhCCCCCeeEEEEEeec
Q 021931 170 AKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRD 209 (305)
Q Consensus 170 ~keG~Yvlm~Fea~psaIkELer~LrLDE~VLR~LIVK~e 209 (305)
+++|||++|+|.++|+++++|+|.|+++++|||||+++++
T Consensus 2 ~~~g~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e 41 (96)
T 2kjw_A 2 DPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVAST 41 (96)
T ss_dssp TTSCCCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECS
T ss_pred CceEEEEEEEeecChhHHHHHHHHhccchhhhhhhheehh
Confidence 5789999999999999999999999999999999999998
No 11
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=97.90 E-value=7.1e-06 Score=63.31 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=34.4
Q ss_pred ccccCcCcceEEEecCCChH-hHHHHHHHHHHHHHhCCC
Q 021931 113 NVERRRHYEVVYLIHEKYEE-DVGSVNEKVQDFLREKKG 150 (305)
Q Consensus 113 ~~~~MR~YEimlILrP~leE-EVkalvekv~~iL~e~GG 150 (305)
..+.+|+||+|||++|++++ ++++++++++++|+++||
T Consensus 39 r~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 39 ASTTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp ECSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 56669999999999999865 799999999999999987
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=74.56 E-value=0.81 Score=41.24 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=2.7
Q ss_pred eEEEEE
Q 021931 201 IRHLVI 206 (305)
Q Consensus 201 LR~LIV 206 (305)
|+++-+
T Consensus 305 L~~L~l 310 (386)
T 2ca6_A 305 LLFLEL 310 (386)
T ss_dssp CCEEEC
T ss_pred ceEEEc
Confidence 444444
No 13
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=58.81 E-value=2 Score=40.57 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=0.0
Q ss_pred CCCcccCCccCCCCCCCCCCC
Q 021931 241 YDDEEYDDEYDDGEGDEMDDN 261 (305)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~ 261 (305)
|++...+++++|+++.++.++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~ 325 (335)
T 4fp9_B 305 NDEDDNDEDDDDEDDDEAEDN 325 (335)
T ss_dssp ---------------------
T ss_pred ccCccccCCCccccccccccc
Confidence 333333444444444444443
No 14
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=35.80 E-value=2.6 Score=41.34 Aligned_cols=11 Identities=0% Similarity=0.395 Sum_probs=6.8
Q ss_pred CcceEEEe--cCC
Q 021931 119 HYEVVYLI--HEK 129 (305)
Q Consensus 119 ~YEimlIL--rP~ 129 (305)
-|-+.|-+ .++
T Consensus 228 gF~L~F~F~~~~N 240 (417)
T 2ayu_A 228 GFKLLFRFDSSAN 240 (417)
T ss_dssp EEEEEEEECTTTC
T ss_pred ceEEEEEeCCCCC
Confidence 46677777 444
No 15
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=31.43 E-value=10 Score=37.23 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=7.2
Q ss_pred CeEEEEEEEE
Q 021931 171 KKAHYILMNF 180 (305)
Q Consensus 171 keG~Yvlm~F 180 (305)
..|+=+.|+|
T Consensus 226 ~~gF~L~F~F 235 (417)
T 2ayu_A 226 RPGFKLLFRF 235 (417)
T ss_dssp SCEEEEEEEE
T ss_pred CcceEEEEEe
Confidence 3477777888
No 16
>2kje_B Early E1A 32 kDa protein; CBP, TAZ2, adenoviral, acetylation, activator, bromodomain, chromosomal rearrangement, disease mutation; NMR {Human adenovirus 5}
Probab=29.45 E-value=10 Score=26.37 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=11.6
Q ss_pred ccCCcchhhhhhhh
Q 021931 67 DNLFFPEAVLLKEK 80 (305)
Q Consensus 67 ~~~~~~~~~~~~~~ 80 (305)
+.|+|||++||---
T Consensus 13 Vn~~FpesllLAAe 26 (42)
T 2kje_B 13 VSQIFPDSVMLAVQ 26 (42)
T ss_dssp HHTTSCSSSCGGGT
T ss_pred HHhhchHHHHHHHH
Confidence 57999999999653
No 17
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=23.56 E-value=2.2e+02 Score=23.51 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=47.1
Q ss_pred CcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEE--------EeCcchHH
Q 021931 117 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNF--------ELEAKWIN 188 (305)
Q Consensus 117 MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~F--------ea~psaIk 188 (305)
......|+|.......+++++.+.+.+.+.+.|.. +..|-....|.++++.| .-+...--
T Consensus 31 s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~g~~------------~~~~EG~~~~~WvLlD~GdVvVHIf~~e~RefY 98 (130)
T 2id1_A 31 TSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVD------------IVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYY 98 (130)
T ss_dssp CSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCC------------CCBCCSTTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCc------------CccccCCCCCCEEEEecCCEEEEcCCHHHHhHc
Confidence 35578889998888889999999999999987642 34455677888877665 22333445
Q ss_pred HHHHHh
Q 021931 189 DFKTML 194 (305)
Q Consensus 189 ELer~L 194 (305)
.||+..
T Consensus 99 ~LE~LW 104 (130)
T 2id1_A 99 DIEALW 104 (130)
T ss_dssp CHHHHT
T ss_pred CHHHHh
Confidence 566666
No 18
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=23.05 E-value=21 Score=29.94 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=0.0
Q ss_pred CCccchhh
Q 021931 220 PEFHTLRA 227 (305)
Q Consensus 220 ~ef~s~~~ 227 (305)
.+|+...+
T Consensus 103 ~~~~~~~~ 110 (140)
T 2byk_A 103 HQFQEMLR 110 (140)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444443
No 19
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=22.36 E-value=2.8e+02 Score=22.75 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=39.3
Q ss_pred CcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchHHHHHHHh
Q 021931 119 HYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTML 194 (305)
Q Consensus 119 ~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaIkELer~L 194 (305)
.|.+.++. |+. ..++.++..+|.++|+.|....-... ..+.++.+.|..+...+..|++.|
T Consensus 6 ~~~itv~~-~Dr----pGiva~vt~~La~~g~NI~d~~~~~~----------~~~f~~~~~v~~~~~~~~~l~~~L 66 (192)
T 1u8s_A 6 HLVITAVG-TDR----PGICNEVVRLVTQAGCNIIDSRIAMF----------GKEFTLLMLISGSPSNITRVETTL 66 (192)
T ss_dssp EEEEEEEE-ECC----TTHHHHHHHHHHHTTCEEEEEEEEEE----------TTEEEEEEEEEECHHHHHHHHHHH
T ss_pred EEEEEEEc-CCC----CcHHHHHHHHHHHCCCCEEeeeeeec----------CCceEEEEEEecCCCCHHHHHHHH
Confidence 46555444 442 24788899999999999998776541 234444556666655666666554
No 20
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.42 E-value=1.4e+02 Score=22.59 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=42.1
Q ss_pred cCcCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEEEeCcchH
Q 021931 116 RRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWI 187 (305)
Q Consensus 116 ~MR~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~Fea~psaI 187 (305)
+|+-| ++.-++..-.+..+.=.+.+..+|.+.||++.-- | ....- ...-..+.-+++.|-+-..+.
T Consensus 2 ~m~aY-~i~~~~v~d~e~y~~Y~~~~~~~l~~~GG~~l~r---g-~~~~l-EG~~~~~~~viieFps~~aa~ 67 (94)
T 3lo3_A 2 NATAY-IIVGLTPKDAEKLQQYGARVASTLAKYSGEVLVK---G-SVEQL-HGKFEHKAQVILEFPSREDAY 67 (94)
T ss_dssp CCCEE-EEEEEEECCHHHHHHHHHHHHHHHHTTTCEEEEE---E-ECEEE-ESCCCCSEEEEEEESSHHHHH
T ss_pred CccEE-EEEEEEECCHHHHHHHHHHHHHHHHHcCCEEEEE---c-ccccc-cCCCCCCeEEEEECCCHHHHH
Confidence 68878 4333443335568888889999999999998753 4 32221 122235677888887654443
No 21
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=20.84 E-value=1e+02 Score=25.35 Aligned_cols=51 Identities=14% Similarity=0.321 Sum_probs=37.3
Q ss_pred cCcceEEEecCCChHhHHHHHHHHHHHHHhCCCEEEEEEeeeccccccccCCCCeEEEEEEEE
Q 021931 118 RHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNF 180 (305)
Q Consensus 118 R~YEimlILrP~leEEVkalvekv~~iL~e~GG~I~kvEdWG~RrLAY~IKK~keG~Yvlm~F 180 (305)
..-..|+|.......+++++.+.+.+.+.+.|....+ |-....|.++++.|
T Consensus 32 ~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~------------~EG~~~~~WvLlD~ 82 (125)
T 2o5a_A 32 LIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKR------------LEGYEQARWVLIDL 82 (125)
T ss_dssp C--CEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCE------------EESTTTTSEEEEEC
T ss_pred cccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCcccc------------ccCCCCCCEEEEeC
Confidence 4567788888888889999999999999988754333 34556777777665
Done!