Query 021932
Match_columns 305
No_of_seqs 212 out of 1660
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 4.5E-62 9.8E-67 456.1 28.1 256 47-303 1-257 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 1.6E-60 3.4E-65 446.3 27.0 256 48-303 1-256 (312)
3 PLN00106 malate dehydrogenase 100.0 1.7E-58 3.7E-63 434.2 30.7 267 36-302 8-274 (323)
4 COG0039 Mdh Malate/lactate deh 100.0 1.8E-58 3.8E-63 428.6 24.1 240 47-299 1-253 (313)
5 KOG1495 Lactate dehydrogenase 100.0 1.1E-56 2.3E-61 400.9 22.2 237 46-298 20-274 (332)
6 KOG1494 NAD-dependent malate d 100.0 3.8E-56 8.3E-61 399.0 25.0 284 9-304 3-287 (345)
7 PTZ00325 malate dehydrogenase; 100.0 9.1E-56 2E-60 415.4 28.2 258 44-303 6-263 (321)
8 cd05290 LDH_3 A subgroup of L- 100.0 3.9E-56 8.6E-61 416.4 24.9 238 48-300 1-256 (307)
9 PRK05086 malate dehydrogenase; 100.0 1.2E-54 2.7E-59 407.5 28.4 254 47-302 1-256 (312)
10 TIGR01759 MalateDH-SF1 malate 100.0 8.7E-55 1.9E-59 409.6 24.5 245 45-301 2-269 (323)
11 cd05293 LDH_1 A subgroup of L- 100.0 1.5E-54 3.3E-59 406.6 25.2 240 46-299 3-258 (312)
12 PLN02602 lactate dehydrogenase 100.0 2.4E-54 5.3E-59 410.1 25.9 240 47-300 38-293 (350)
13 PRK05442 malate dehydrogenase; 100.0 3.9E-54 8.5E-59 405.6 23.8 244 45-300 3-268 (326)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 1.3E-53 2.8E-58 398.3 22.5 234 51-299 1-250 (299)
15 PRK00066 ldh L-lactate dehydro 100.0 2.5E-52 5.4E-57 392.4 25.9 241 45-300 5-260 (315)
16 cd00704 MDH Malate dehydrogena 100.0 1.6E-52 3.5E-57 394.5 23.6 242 48-301 2-269 (323)
17 PLN00112 malate dehydrogenase 100.0 3.5E-52 7.5E-57 403.8 24.4 246 44-301 98-365 (444)
18 TIGR01757 Malate-DH_plant mala 100.0 7.1E-52 1.5E-56 396.2 24.2 246 43-300 41-308 (387)
19 cd01338 MDH_choloroplast_like 100.0 1.4E-51 3E-56 388.0 24.7 244 45-300 1-266 (322)
20 cd05291 HicDH_like L-2-hydroxy 100.0 3.4E-51 7.4E-56 383.5 24.7 240 47-301 1-255 (306)
21 cd00300 LDH_like L-lactate deh 100.0 6.8E-51 1.5E-55 380.5 24.1 239 49-301 1-250 (300)
22 TIGR01763 MalateDH_bact malate 100.0 1.3E-50 2.7E-55 379.4 24.9 239 47-300 2-252 (305)
23 PTZ00082 L-lactate dehydrogena 100.0 2.2E-50 4.7E-55 380.0 26.4 243 45-300 5-267 (321)
24 PTZ00117 malate dehydrogenase; 100.0 3.3E-50 7.2E-55 378.8 27.1 242 45-299 4-260 (319)
25 TIGR01758 MDH_euk_cyt malate d 100.0 3.5E-50 7.6E-55 378.8 24.2 244 48-300 1-267 (324)
26 cd05292 LDH_2 A subgroup of L- 100.0 3E-49 6.5E-54 370.7 25.6 239 47-300 1-255 (308)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 8.9E-49 1.9E-53 369.7 23.6 244 45-300 1-270 (325)
28 cd05294 LDH-like_MDH_nadp A la 100.0 8.6E-48 1.9E-52 360.9 25.3 241 47-300 1-255 (309)
29 cd01339 LDH-like_MDH L-lactate 100.0 1.4E-47 3E-52 358.2 24.1 238 49-299 1-248 (300)
30 PRK06223 malate dehydrogenase; 100.0 5.3E-47 1.2E-51 354.9 24.7 241 46-299 2-252 (307)
31 cd05295 MDH_like Malate dehydr 100.0 1.4E-47 3.1E-52 371.5 21.2 240 46-300 123-396 (452)
32 PLN00135 malate dehydrogenase 100.0 7.1E-47 1.5E-51 353.5 21.3 216 74-300 15-250 (309)
33 TIGR01756 LDH_protist lactate 100.0 1.6E-45 3.6E-50 345.1 21.2 221 68-300 13-251 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 1.5E-41 3.3E-46 311.8 23.3 205 49-299 1-210 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 4.1E-38 8.9E-43 277.7 15.1 249 45-302 3-273 (332)
36 PF00056 Ldh_1_N: lactate/mala 100.0 2E-34 4.2E-39 241.4 13.0 139 47-190 1-141 (141)
37 PRK15076 alpha-galactosidase; 99.9 2.8E-25 6.1E-30 216.9 14.3 164 47-223 2-200 (431)
38 cd05197 GH4_glycoside_hydrolas 99.9 7.2E-25 1.6E-29 213.5 17.1 177 47-238 1-207 (425)
39 cd05296 GH4_P_beta_glucosidase 99.9 1.1E-23 2.5E-28 204.8 15.6 167 47-224 1-198 (419)
40 cd05297 GH4_alpha_glucosidase_ 99.9 1.2E-21 2.6E-26 191.3 16.4 167 47-223 1-198 (423)
41 PF02866 Ldh_1_C: lactate/mala 99.9 4.6E-22 9.9E-27 172.1 10.5 104 192-301 1-115 (174)
42 cd05298 GH4_GlvA_pagL_like Gly 99.8 2.7E-20 5.9E-25 181.9 16.4 166 47-222 1-196 (437)
43 PF02056 Glyco_hydro_4: Family 99.8 2.6E-18 5.5E-23 149.2 15.3 152 48-209 1-183 (183)
44 COG1486 CelF Alpha-galactosida 99.8 6.9E-18 1.5E-22 162.7 14.8 169 45-223 2-201 (442)
45 COG1004 Ugd Predicted UDP-gluc 99.0 2.2E-08 4.8E-13 95.7 17.3 115 47-173 1-131 (414)
46 PF02737 3HCDH_N: 3-hydroxyacy 99.0 1.7E-09 3.8E-14 94.1 8.6 118 48-193 1-137 (180)
47 COG1250 FadB 3-hydroxyacyl-CoA 98.9 5.1E-09 1.1E-13 98.0 10.2 141 46-211 3-178 (307)
48 PF03721 UDPG_MGDP_dh_N: UDP-g 98.8 1.2E-08 2.6E-13 89.2 8.6 125 47-183 1-141 (185)
49 PRK07066 3-hydroxybutyryl-CoA 98.8 4.3E-08 9.2E-13 92.8 12.5 118 47-191 8-140 (321)
50 PRK07819 3-hydroxybutyryl-CoA 98.8 6E-08 1.3E-12 90.4 12.5 120 45-192 4-143 (286)
51 PRK11730 fadB multifunctional 98.7 6.8E-08 1.5E-12 100.6 11.3 118 46-191 313-449 (715)
52 TIGR02441 fa_ox_alpha_mit fatt 98.7 6E-08 1.3E-12 101.2 10.4 119 45-191 334-471 (737)
53 PRK08293 3-hydroxybutyryl-CoA 98.7 1.9E-07 4.2E-12 86.8 12.7 119 46-191 3-141 (287)
54 TIGR02437 FadB fatty oxidation 98.7 1.1E-07 2.3E-12 99.0 11.9 119 45-191 312-449 (714)
55 PRK11154 fadJ multifunctional 98.7 1.9E-07 4.1E-12 97.2 12.4 119 45-191 308-446 (708)
56 TIGR02440 FadJ fatty oxidation 98.7 2E-07 4.3E-12 96.8 12.4 119 45-191 303-441 (699)
57 KOG2304 3-hydroxyacyl-CoA dehy 98.6 1.9E-08 4.2E-13 89.3 3.8 121 44-192 9-154 (298)
58 PF01073 3Beta_HSD: 3-beta hyd 98.6 5.4E-07 1.2E-11 83.7 11.5 109 51-159 2-112 (280)
59 PF02719 Polysacc_synt_2: Poly 98.6 5E-07 1.1E-11 84.1 11.1 121 49-170 1-139 (293)
60 PLN02353 probable UDP-glucose 98.6 9.3E-07 2E-11 87.8 13.3 122 46-172 1-137 (473)
61 TIGR01915 npdG NADPH-dependent 98.6 8.9E-07 1.9E-11 79.2 12.0 100 47-168 1-106 (219)
62 PRK05808 3-hydroxybutyryl-CoA 98.6 1.2E-06 2.5E-11 81.3 13.2 117 47-191 4-139 (282)
63 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.5 6.6E-07 1.4E-11 89.6 10.5 122 45-193 4-143 (503)
64 PRK06035 3-hydroxyacyl-CoA deh 98.5 1.2E-06 2.7E-11 81.5 11.6 118 47-192 4-143 (291)
65 PRK08268 3-hydroxy-acyl-CoA de 98.5 1.5E-06 3.2E-11 87.2 12.4 122 46-195 7-147 (507)
66 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 5.2E-07 1.1E-11 76.6 7.6 94 48-163 1-103 (157)
67 COG1086 Predicted nucleoside-d 98.4 4.9E-06 1.1E-10 82.9 14.7 208 45-286 249-493 (588)
68 PRK07530 3-hydroxybutyryl-CoA 98.4 1.5E-06 3.2E-11 81.0 10.1 119 46-192 4-141 (292)
69 PLN02166 dTDP-glucose 4,6-dehy 98.4 3.7E-06 8.1E-11 82.8 13.1 114 44-163 118-233 (436)
70 PRK09260 3-hydroxybutyryl-CoA 98.4 3.1E-06 6.7E-11 78.7 11.5 100 47-168 2-120 (288)
71 PLN02662 cinnamyl-alcohol dehy 98.4 8.8E-06 1.9E-10 75.8 14.0 113 46-160 4-124 (322)
72 PLN02427 UDP-apiose/xylose syn 98.4 4.8E-06 1E-10 80.2 12.5 115 45-163 13-135 (386)
73 PLN02545 3-hydroxybutyryl-CoA 98.4 3.2E-06 6.9E-11 78.8 10.8 100 47-169 5-123 (295)
74 PRK06130 3-hydroxybutyryl-CoA 98.3 4.3E-06 9.3E-11 78.4 11.2 119 46-191 4-136 (311)
75 PLN02650 dihydroflavonol-4-red 98.3 1.3E-05 2.7E-10 76.2 14.2 119 43-163 2-127 (351)
76 PRK08125 bifunctional UDP-gluc 98.3 9.4E-06 2E-10 83.9 13.6 125 27-163 300-432 (660)
77 PRK15181 Vi polysaccharide bio 98.3 1E-05 2.3E-10 76.9 12.9 168 46-222 15-199 (348)
78 PLN00198 anthocyanidin reducta 98.3 2E-05 4.4E-10 74.3 14.3 116 46-163 9-131 (338)
79 PRK07531 bifunctional 3-hydrox 98.3 1E-05 2.2E-10 81.1 12.5 103 47-170 5-121 (495)
80 PRK06129 3-hydroxyacyl-CoA deh 98.3 1.5E-05 3.3E-10 74.8 12.9 103 46-169 2-122 (308)
81 KOG1502 Flavonol reductase/cin 98.2 2.1E-05 4.5E-10 74.2 13.0 106 45-154 5-119 (327)
82 PLN02206 UDP-glucuronate decar 98.2 1.9E-05 4.1E-10 78.0 13.1 113 45-163 118-232 (442)
83 TIGR03026 NDP-sugDHase nucleot 98.2 2.8E-05 6.2E-10 75.9 14.1 119 47-179 1-137 (411)
84 PLN02695 GDP-D-mannose-3',5'-e 98.2 1E-05 2.2E-10 77.8 10.8 122 35-162 10-136 (370)
85 PLN02214 cinnamoyl-CoA reducta 98.2 4E-05 8.6E-10 72.9 13.6 110 45-161 9-125 (342)
86 TIGR02622 CDP_4_6_dhtase CDP-g 98.1 7.2E-05 1.6E-09 71.0 14.9 117 46-164 4-127 (349)
87 CHL00194 ycf39 Ycf39; Provisio 98.1 1.3E-05 2.8E-10 75.2 9.6 109 47-163 1-110 (317)
88 PF03807 F420_oxidored: NADP o 98.1 8.5E-06 1.8E-10 62.8 6.9 94 48-165 1-96 (96)
89 TIGR03466 HpnA hopanoid-associ 98.1 3E-05 6.4E-10 72.1 11.9 112 47-163 1-113 (328)
90 PRK11908 NAD-dependent epimera 98.1 3.1E-05 6.7E-10 73.4 12.1 109 46-163 1-117 (347)
91 PRK15057 UDP-glucose 6-dehydro 98.1 3E-05 6.5E-10 75.4 12.1 116 47-172 1-127 (388)
92 TIGR01181 dTDP_gluc_dehyt dTDP 98.1 7.2E-05 1.6E-09 68.9 14.1 113 48-163 1-124 (317)
93 COG0240 GpsA Glycerol-3-phosph 98.1 6.2E-05 1.3E-09 71.0 12.9 111 46-180 1-123 (329)
94 TIGR03589 PseB UDP-N-acetylglu 98.1 3.3E-05 7.1E-10 72.9 11.2 114 46-163 4-125 (324)
95 PTZ00345 glycerol-3-phosphate 98.1 4.2E-05 9.1E-10 73.7 11.7 107 31-163 2-129 (365)
96 PF13460 NAD_binding_10: NADH( 98.1 6.4E-05 1.4E-09 64.3 11.7 91 49-160 1-95 (183)
97 PRK00094 gpsA NAD(P)H-dependen 98.0 4.4E-05 9.6E-10 71.6 11.4 101 46-168 1-110 (325)
98 PLN02986 cinnamyl-alcohol dehy 98.0 0.00016 3.4E-09 67.7 14.6 114 46-161 5-126 (322)
99 PLN02989 cinnamyl-alcohol dehy 98.0 0.00017 3.7E-09 67.4 14.8 113 46-160 5-126 (325)
100 PRK15182 Vi polysaccharide bio 98.0 0.0001 2.3E-09 72.4 13.3 120 44-179 4-137 (425)
101 PRK10217 dTDP-glucose 4,6-dehy 98.0 0.00019 4.1E-09 68.0 14.5 106 47-153 2-115 (355)
102 PF03446 NAD_binding_2: NAD bi 98.0 5.4E-05 1.2E-09 64.5 9.7 89 46-161 1-92 (163)
103 COG2085 Predicted dinucleotide 98.0 8E-05 1.7E-09 66.0 10.9 96 46-166 1-96 (211)
104 PRK14619 NAD(P)H-dependent gly 98.0 6.7E-05 1.5E-09 70.5 11.1 79 46-165 4-84 (308)
105 PRK12921 2-dehydropantoate 2-r 98.0 6E-05 1.3E-09 70.1 10.4 120 47-193 1-126 (305)
106 PRK10675 UDP-galactose-4-epime 98.0 0.00012 2.6E-09 68.7 12.5 111 47-160 1-121 (338)
107 COG0451 WcaG Nucleoside-diphos 97.9 9E-05 2E-09 68.3 11.3 108 48-160 2-113 (314)
108 PRK06249 2-dehydropantoate 2-r 97.9 0.00011 2.3E-09 69.3 11.8 120 42-191 1-127 (313)
109 TIGR01777 yfcH conserved hypot 97.9 6.1E-05 1.3E-09 68.8 9.9 99 49-156 1-103 (292)
110 PLN02896 cinnamyl-alcohol dehy 97.9 0.00011 2.4E-09 69.8 11.9 105 45-154 9-128 (353)
111 PLN02778 3,5-epimerase/4-reduc 97.9 0.00014 3E-09 68.0 12.3 91 44-156 7-104 (298)
112 PRK08229 2-dehydropantoate 2-r 97.9 7.2E-05 1.6E-09 70.9 10.4 101 46-169 2-113 (341)
113 PRK11064 wecC UDP-N-acetyl-D-m 97.9 0.00017 3.7E-09 70.7 13.2 111 46-172 3-129 (415)
114 PLN02583 cinnamoyl-CoA reducta 97.9 0.00029 6.4E-09 65.5 14.1 111 47-161 7-126 (297)
115 PLN02572 UDP-sulfoquinovose sy 97.9 8.4E-05 1.8E-09 73.4 10.9 179 42-223 43-263 (442)
116 PLN03209 translocon at the inn 97.9 0.00012 2.7E-09 74.0 12.1 117 45-163 79-208 (576)
117 PRK10084 dTDP-glucose 4,6 dehy 97.9 0.00027 6E-09 66.8 13.9 106 47-153 1-114 (352)
118 PLN02653 GDP-mannose 4,6-dehyd 97.9 0.00014 2.9E-09 68.7 11.6 112 42-155 2-126 (340)
119 PRK14620 NAD(P)H-dependent gly 97.9 0.00012 2.5E-09 69.2 10.9 98 47-168 1-111 (326)
120 PRK09987 dTDP-4-dehydrorhamnos 97.8 0.0001 2.2E-09 68.7 9.8 93 47-155 1-97 (299)
121 PRK06522 2-dehydropantoate 2-r 97.8 0.00027 5.8E-09 65.6 12.6 101 47-170 1-107 (304)
122 PRK14618 NAD(P)H-dependent gly 97.8 8.5E-05 1.8E-09 70.3 9.3 97 46-167 4-108 (328)
123 PLN02240 UDP-glucose 4-epimera 97.8 0.00032 7E-09 66.2 13.2 114 45-160 4-129 (352)
124 PRK07201 short chain dehydroge 97.8 0.00031 6.7E-09 72.1 13.5 112 47-162 1-124 (657)
125 PLN02260 probable rhamnose bio 97.8 0.00043 9.3E-09 71.7 14.6 121 43-163 3-131 (668)
126 TIGR01214 rmlD dTDP-4-dehydror 97.8 0.00016 3.5E-09 66.2 10.1 89 48-155 1-93 (287)
127 PRK12439 NAD(P)H-dependent gly 97.8 0.00019 4.2E-09 68.5 10.8 99 45-168 6-116 (341)
128 PRK06194 hypothetical protein; 97.8 0.00092 2E-08 61.2 15.0 115 46-164 6-148 (287)
129 TIGR01472 gmd GDP-mannose 4,6- 97.8 0.00033 7.1E-09 66.3 12.2 106 47-154 1-120 (343)
130 PF01118 Semialdhyde_dh: Semia 97.8 0.00012 2.6E-09 59.3 7.8 72 48-122 1-74 (121)
131 TIGR03376 glycerol3P_DH glycer 97.8 0.00019 4E-09 68.7 10.2 71 48-122 1-90 (342)
132 COG0677 WecC UDP-N-acetyl-D-ma 97.7 0.00036 7.7E-09 67.2 11.7 115 46-173 9-139 (436)
133 PRK07417 arogenate dehydrogena 97.7 0.00021 4.5E-09 66.2 9.7 64 47-122 1-65 (279)
134 PRK11150 rfaD ADP-L-glycero-D- 97.7 0.00036 7.9E-09 64.7 11.3 102 49-155 2-109 (308)
135 PLN02657 3,8-divinyl protochlo 97.7 0.00043 9.4E-09 67.2 12.0 115 44-163 58-182 (390)
136 COG1087 GalE UDP-glucose 4-epi 97.7 0.00057 1.2E-08 63.7 11.7 165 47-222 1-176 (329)
137 PRK08269 3-hydroxybutyryl-CoA 97.7 0.00038 8.2E-09 65.8 10.7 111 58-192 1-137 (314)
138 KOG1429 dTDP-glucose 4-6-dehyd 97.6 0.00016 3.4E-09 66.8 7.5 104 47-154 28-133 (350)
139 PF01370 Epimerase: NAD depend 97.6 0.00028 6.1E-09 62.2 8.9 111 49-163 1-116 (236)
140 TIGR02197 heptose_epim ADP-L-g 97.6 0.00053 1.2E-08 63.4 10.8 103 49-155 1-107 (314)
141 PRK07231 fabG 3-ketoacyl-(acyl 97.6 0.0013 2.9E-08 58.5 12.9 36 45-82 4-39 (251)
142 PRK11880 pyrroline-5-carboxyla 97.6 0.00043 9.4E-09 63.3 9.8 96 46-167 2-98 (267)
143 KOG1430 C-3 sterol dehydrogena 97.6 0.0006 1.3E-08 65.4 11.0 112 45-158 3-121 (361)
144 PRK07502 cyclohexadienyl dehyd 97.6 0.00048 1E-08 64.6 10.1 68 47-123 7-75 (307)
145 PRK07680 late competence prote 97.6 0.00055 1.2E-08 63.1 10.3 97 47-167 1-100 (273)
146 COG1748 LYS9 Saccharopine dehy 97.6 0.0014 3.1E-08 63.5 13.3 150 46-224 1-160 (389)
147 PLN02686 cinnamoyl-CoA reducta 97.6 0.00047 1E-08 66.3 10.0 120 42-163 49-180 (367)
148 TIGR01179 galE UDP-glucose-4-e 97.6 0.00064 1.4E-08 62.8 10.6 108 48-160 1-118 (328)
149 PLN02253 xanthoxin dehydrogena 97.6 0.003 6.5E-08 57.7 14.9 115 45-164 17-155 (280)
150 PRK05865 hypothetical protein; 97.5 0.0004 8.7E-09 73.6 10.0 104 47-166 1-105 (854)
151 PRK08643 acetoin reductase; Va 97.5 0.0045 9.8E-08 55.6 15.3 115 47-165 3-140 (256)
152 PRK13394 3-hydroxybutyrate deh 97.5 0.00083 1.8E-08 60.3 10.4 114 46-163 7-143 (262)
153 PLN02688 pyrroline-5-carboxyla 97.5 0.00074 1.6E-08 61.8 10.1 95 47-167 1-99 (266)
154 PRK08655 prephenate dehydrogen 97.5 0.00073 1.6E-08 66.8 10.3 66 47-122 1-66 (437)
155 PRK11559 garR tartronate semia 97.5 0.00072 1.6E-08 62.9 9.8 66 46-123 2-67 (296)
156 PRK07326 short chain dehydroge 97.5 0.0025 5.5E-08 56.4 12.8 115 46-165 6-141 (237)
157 TIGR00872 gnd_rel 6-phosphoglu 97.5 0.00092 2E-08 62.6 10.3 95 47-166 1-96 (298)
158 PRK11199 tyrA bifunctional cho 97.5 0.00074 1.6E-08 65.3 9.9 54 45-122 97-150 (374)
159 PF10727 Rossmann-like: Rossma 97.4 0.00031 6.7E-09 57.8 6.0 102 45-172 9-115 (127)
160 PRK06545 prephenate dehydrogen 97.4 0.001 2.2E-08 64.0 10.5 68 47-122 1-68 (359)
161 PRK12829 short chain dehydroge 97.4 0.0046 9.9E-08 55.6 14.3 36 45-82 10-45 (264)
162 PRK12429 3-hydroxybutyrate deh 97.4 0.0011 2.5E-08 59.2 10.3 112 47-163 5-139 (258)
163 PRK12320 hypothetical protein; 97.4 0.0012 2.6E-08 68.6 11.6 95 47-155 1-95 (699)
164 TIGR01746 Thioester-redct thio 97.4 0.0015 3.3E-08 61.2 11.5 113 48-161 1-134 (367)
165 PRK08267 short chain dehydroge 97.4 0.00089 1.9E-08 60.4 9.6 115 47-164 2-136 (260)
166 PRK12384 sorbitol-6-phosphate 97.4 0.0075 1.6E-07 54.2 15.6 117 47-165 3-142 (259)
167 PLN00141 Tic62-NAD(P)-related 97.4 0.0011 2.4E-08 59.9 10.0 112 45-164 16-133 (251)
168 TIGR01505 tartro_sem_red 2-hyd 97.4 0.00067 1.4E-08 63.0 8.7 64 48-123 1-64 (291)
169 COG0300 DltE Short-chain dehyd 97.4 0.0037 8E-08 57.7 13.1 117 43-163 3-142 (265)
170 PRK07102 short chain dehydroge 97.4 0.003 6.5E-08 56.4 12.2 115 47-164 2-135 (243)
171 PRK05866 short chain dehydroge 97.4 0.0036 7.7E-08 58.2 13.0 39 42-82 36-74 (293)
172 PF02558 ApbA: Ketopantoate re 97.4 0.00076 1.6E-08 56.1 7.7 118 49-193 1-125 (151)
173 PRK07806 short chain dehydroge 97.4 0.0015 3.3E-08 58.3 10.1 114 46-163 6-134 (248)
174 PRK12828 short chain dehydroge 97.4 0.0019 4.2E-08 56.8 10.7 36 45-82 6-41 (239)
175 PRK07634 pyrroline-5-carboxyla 97.3 0.0021 4.5E-08 57.9 10.9 99 46-168 4-104 (245)
176 PRK12937 short chain dehydroge 97.3 0.0063 1.4E-07 54.0 13.7 116 45-164 4-140 (245)
177 PRK07679 pyrroline-5-carboxyla 97.3 0.002 4.3E-08 59.6 10.8 98 46-167 3-103 (279)
178 PRK07067 sorbitol dehydrogenas 97.3 0.005 1.1E-07 55.4 13.2 115 46-164 6-140 (257)
179 PRK07424 bifunctional sterol d 97.3 0.0036 7.9E-08 61.3 13.0 102 45-149 177-283 (406)
180 PLN02256 arogenate dehydrogena 97.3 0.0019 4.1E-08 60.8 10.7 68 42-122 32-100 (304)
181 TIGR01832 kduD 2-deoxy-D-gluco 97.3 0.0059 1.3E-07 54.5 13.3 116 45-164 4-140 (248)
182 PLN02725 GDP-4-keto-6-deoxyman 97.3 0.00097 2.1E-08 61.4 8.3 93 51-161 2-99 (306)
183 COG2910 Putative NADH-flavin r 97.3 0.002 4.4E-08 56.1 9.5 102 47-164 1-105 (211)
184 COG2084 MmsB 3-hydroxyisobutyr 97.3 0.0015 3.2E-08 60.9 9.3 66 47-123 1-66 (286)
185 PRK06138 short chain dehydroge 97.3 0.0044 9.5E-08 55.3 12.1 36 45-82 4-39 (252)
186 PRK14982 acyl-ACP reductase; P 97.3 0.0018 3.8E-08 61.9 9.8 99 43-169 152-252 (340)
187 PRK15461 NADH-dependent gamma- 97.3 0.0018 3.9E-08 60.5 9.8 64 47-122 2-65 (296)
188 PF04321 RmlD_sub_bind: RmlD s 97.3 0.00041 8.8E-09 64.5 5.4 91 47-154 1-93 (286)
189 PLN02996 fatty acyl-CoA reduct 97.3 0.0048 1E-07 61.9 13.3 118 45-163 10-161 (491)
190 PRK07523 gluconate 5-dehydroge 97.3 0.0068 1.5E-07 54.5 13.2 115 46-164 10-146 (255)
191 PRK12491 pyrroline-5-carboxyla 97.3 0.0025 5.4E-08 59.0 10.5 68 46-122 2-71 (272)
192 PRK06182 short chain dehydroge 97.2 0.0037 8E-08 56.9 11.4 112 46-163 3-132 (273)
193 PTZ00142 6-phosphogluconate de 97.2 0.0019 4.2E-08 64.3 10.2 96 47-165 2-103 (470)
194 PRK07985 oxidoreductase; Provi 97.2 0.0051 1.1E-07 57.1 12.5 115 47-164 50-186 (294)
195 PRK08507 prephenate dehydrogen 97.2 0.002 4.2E-08 59.5 9.6 66 47-122 1-66 (275)
196 PLN02712 arogenate dehydrogena 97.2 0.0024 5.3E-08 66.3 11.3 93 42-163 48-143 (667)
197 TIGR01724 hmd_rel H2-forming N 97.2 0.021 4.5E-07 54.1 16.3 67 47-123 1-90 (341)
198 PRK12936 3-ketoacyl-(acyl-carr 97.2 0.0087 1.9E-07 53.0 13.5 114 45-165 5-140 (245)
199 PRK08213 gluconate 5-dehydroge 97.2 0.0057 1.2E-07 55.1 12.4 116 44-164 10-149 (259)
200 PRK08278 short chain dehydroge 97.2 0.014 3.1E-07 53.3 15.2 36 45-82 5-40 (273)
201 PRK05717 oxidoreductase; Valid 97.2 0.0044 9.6E-08 55.8 11.6 114 46-164 10-144 (255)
202 PRK06928 pyrroline-5-carboxyla 97.2 0.0033 7.1E-08 58.3 10.9 99 47-168 2-103 (277)
203 PRK07069 short chain dehydroge 97.2 0.0068 1.5E-07 54.0 12.7 114 48-164 1-138 (251)
204 PRK05875 short chain dehydroge 97.2 0.014 3.1E-07 53.0 14.9 117 46-164 7-146 (276)
205 TIGR02354 thiF_fam2 thiamine b 97.2 0.004 8.7E-08 55.1 10.8 35 45-81 20-54 (200)
206 TIGR03206 benzo_BadH 2-hydroxy 97.2 0.0041 8.9E-08 55.4 11.1 102 46-151 3-123 (250)
207 PRK06914 short chain dehydroge 97.2 0.005 1.1E-07 56.2 11.8 34 47-82 4-37 (280)
208 PRK12480 D-lactate dehydrogena 97.2 0.0021 4.6E-08 61.2 9.6 91 45-164 145-235 (330)
209 PRK07890 short chain dehydroge 97.2 0.0077 1.7E-07 54.0 12.8 117 44-164 3-141 (258)
210 PRK06180 short chain dehydroge 97.2 0.015 3.2E-07 53.2 14.7 113 46-163 4-136 (277)
211 PRK12549 shikimate 5-dehydroge 97.2 0.002 4.4E-08 60.0 9.0 73 45-122 126-200 (284)
212 PRK06197 short chain dehydroge 97.2 0.0061 1.3E-07 56.6 12.3 117 44-163 14-151 (306)
213 PRK07774 short chain dehydroge 97.2 0.0089 1.9E-07 53.3 12.9 114 46-163 6-144 (250)
214 KOG2305 3-hydroxyacyl-CoA dehy 97.2 0.00087 1.9E-08 60.1 6.1 157 47-222 4-191 (313)
215 PRK09135 pteridine reductase; 97.2 0.0043 9.4E-08 55.0 10.8 104 47-153 7-130 (249)
216 PRK08945 putative oxoacyl-(acy 97.2 0.0074 1.6E-07 54.0 12.4 117 45-164 11-152 (247)
217 PLN00016 RNA-binding protein; 97.2 0.0041 8.9E-08 59.8 11.2 99 42-160 48-162 (378)
218 PRK12826 3-ketoacyl-(acyl-carr 97.1 0.0047 1E-07 54.9 10.9 113 46-163 6-141 (251)
219 PRK12939 short chain dehydroge 97.1 0.0098 2.1E-07 52.9 12.9 115 46-164 7-143 (250)
220 PRK05653 fabG 3-ketoacyl-(acyl 97.1 0.0037 7.9E-08 55.2 10.0 35 46-82 5-39 (246)
221 PRK06924 short chain dehydroge 97.1 0.0058 1.2E-07 54.6 11.3 34 47-82 2-35 (251)
222 PRK06172 short chain dehydroge 97.1 0.0046 9.9E-08 55.4 10.6 35 46-82 7-41 (253)
223 PTZ00431 pyrroline carboxylate 97.1 0.0039 8.3E-08 57.2 10.2 90 46-167 3-94 (260)
224 PRK08818 prephenate dehydrogen 97.1 0.0036 7.7E-08 60.5 10.4 56 46-123 4-60 (370)
225 PRK07856 short chain dehydroge 97.1 0.008 1.7E-07 54.0 12.2 110 45-164 5-135 (252)
226 PRK07576 short chain dehydroge 97.1 0.0066 1.4E-07 55.2 11.7 118 45-166 8-146 (264)
227 PRK07814 short chain dehydroge 97.1 0.0073 1.6E-07 54.7 11.9 115 46-164 10-147 (263)
228 PRK05565 fabG 3-ketoacyl-(acyl 97.1 0.0058 1.3E-07 54.1 11.1 104 45-152 4-127 (247)
229 PF01488 Shikimate_DH: Shikima 97.1 0.0027 5.9E-08 52.4 8.3 78 43-125 9-86 (135)
230 PRK06179 short chain dehydroge 97.1 0.0056 1.2E-07 55.5 11.1 34 47-82 5-38 (270)
231 PRK12825 fabG 3-ketoacyl-(acyl 97.1 0.01 2.2E-07 52.4 12.5 101 46-150 6-126 (249)
232 PRK07024 short chain dehydroge 97.1 0.0034 7.4E-08 56.6 9.6 35 46-82 2-36 (257)
233 PRK10538 malonic semialdehyde 97.1 0.0054 1.2E-07 55.0 10.8 34 47-82 1-34 (248)
234 PRK08340 glucose-1-dehydrogena 97.1 0.009 2E-07 53.9 12.4 34 47-82 1-34 (259)
235 PRK12367 short chain dehydroge 97.1 0.018 3.8E-07 52.3 14.2 100 47-150 15-118 (245)
236 PRK06482 short chain dehydroge 97.1 0.0052 1.1E-07 55.9 10.8 99 47-150 3-118 (276)
237 PRK07478 short chain dehydroge 97.1 0.0099 2.1E-07 53.4 12.5 115 45-164 5-143 (254)
238 PRK05650 short chain dehydroge 97.1 0.0059 1.3E-07 55.5 11.1 113 47-164 1-136 (270)
239 PRK08251 short chain dehydroge 97.1 0.011 2.3E-07 52.8 12.5 102 47-150 3-123 (248)
240 PRK12827 short chain dehydroge 97.1 0.011 2.4E-07 52.4 12.5 102 46-151 6-130 (249)
241 PRK12490 6-phosphogluconate de 97.1 0.0046 1E-07 57.8 10.4 91 47-164 1-95 (299)
242 PRK12745 3-ketoacyl-(acyl-carr 97.1 0.029 6.3E-07 50.1 15.3 34 47-82 3-36 (256)
243 COG1893 ApbA Ketopantoate redu 97.1 0.0031 6.8E-08 59.4 9.3 119 47-193 1-125 (307)
244 TIGR01963 PHB_DH 3-hydroxybuty 97.1 0.0081 1.8E-07 53.6 11.6 34 47-82 2-35 (255)
245 PRK05708 2-dehydropantoate 2-r 97.1 0.0092 2E-07 56.1 12.4 117 46-191 2-125 (305)
246 PRK08263 short chain dehydroge 97.0 0.0035 7.7E-08 57.2 9.1 111 47-163 4-135 (275)
247 PRK06841 short chain dehydroge 97.0 0.0058 1.3E-07 54.7 10.4 113 45-163 14-147 (255)
248 PRK12823 benD 1,6-dihydroxycyc 97.0 0.01 2.2E-07 53.4 12.0 35 46-82 8-42 (260)
249 PRK05993 short chain dehydroge 97.0 0.0046 9.9E-08 56.6 9.7 111 47-163 5-134 (277)
250 PRK07904 short chain dehydroge 97.0 0.012 2.5E-07 53.4 12.3 116 44-163 6-145 (253)
251 PRK07666 fabG 3-ketoacyl-(acyl 97.0 0.0073 1.6E-07 53.6 10.8 102 46-151 7-127 (239)
252 PRK05854 short chain dehydroge 97.0 0.013 2.9E-07 54.8 13.0 115 45-163 13-149 (313)
253 TIGR03325 BphB_TodD cis-2,3-di 97.0 0.012 2.5E-07 53.3 12.1 36 45-82 4-39 (262)
254 COG1090 Predicted nucleoside-d 97.0 0.0071 1.5E-07 55.9 10.4 98 49-157 1-103 (297)
255 PRK13243 glyoxylate reductase; 97.0 0.0039 8.4E-08 59.4 9.1 98 44-168 148-247 (333)
256 TIGR03649 ergot_EASG ergot alk 97.0 0.0044 9.5E-08 56.9 9.3 95 48-160 1-102 (285)
257 PRK07832 short chain dehydroge 97.0 0.046 1E-06 49.7 16.0 116 47-165 1-139 (272)
258 COG0287 TyrA Prephenate dehydr 97.0 0.0091 2E-07 55.6 11.3 67 45-123 2-73 (279)
259 PRK06124 gluconate 5-dehydroge 97.0 0.0066 1.4E-07 54.5 10.2 117 44-165 9-148 (256)
260 PF05368 NmrA: NmrA-like famil 97.0 0.0029 6.3E-08 56.4 7.8 97 49-158 1-98 (233)
261 PRK09599 6-phosphogluconate de 97.0 0.0054 1.2E-07 57.4 9.9 64 47-122 1-67 (301)
262 PRK07453 protochlorophyllide o 97.0 0.008 1.7E-07 56.3 11.0 36 45-82 5-40 (322)
263 PRK09291 short chain dehydroge 97.0 0.012 2.7E-07 52.6 11.8 75 47-125 3-84 (257)
264 PRK05876 short chain dehydroge 96.9 0.011 2.4E-07 54.3 11.5 114 47-164 7-143 (275)
265 PRK08085 gluconate 5-dehydroge 96.9 0.0097 2.1E-07 53.4 11.0 115 45-163 8-144 (254)
266 PRK06550 fabG 3-ketoacyl-(acyl 96.9 0.02 4.3E-07 50.6 12.8 107 45-163 4-126 (235)
267 PRK07454 short chain dehydroge 96.9 0.0088 1.9E-07 53.2 10.5 35 46-82 6-40 (241)
268 PRK09186 flagellin modificatio 96.9 0.011 2.3E-07 53.0 11.1 35 46-82 4-38 (256)
269 COG1712 Predicted dinucleotide 96.9 0.0067 1.5E-07 54.4 9.3 96 47-167 1-97 (255)
270 COG0569 TrkA K+ transport syst 96.9 0.005 1.1E-07 55.4 8.8 33 47-82 1-33 (225)
271 PRK15469 ghrA bifunctional gly 96.9 0.011 2.3E-07 56.0 11.3 92 45-163 135-226 (312)
272 PRK06181 short chain dehydroge 96.9 0.012 2.6E-07 53.1 11.3 114 47-164 2-137 (263)
273 PRK12481 2-deoxy-D-gluconate 3 96.9 0.0082 1.8E-07 54.1 10.1 115 46-164 8-143 (251)
274 PRK06523 short chain dehydroge 96.9 0.0032 7E-08 56.7 7.4 111 46-164 9-138 (260)
275 PRK07574 formate dehydrogenase 96.9 0.0099 2.2E-07 57.8 11.2 101 43-168 189-291 (385)
276 PRK06476 pyrroline-5-carboxyla 96.9 0.0063 1.4E-07 55.5 9.4 68 47-122 1-69 (258)
277 PRK08264 short chain dehydroge 96.9 0.022 4.8E-07 50.4 12.7 114 44-165 4-134 (238)
278 PRK09072 short chain dehydroge 96.9 0.011 2.5E-07 53.3 11.0 116 44-164 3-139 (263)
279 PRK06398 aldose dehydrogenase; 96.9 0.028 6.1E-07 50.8 13.6 111 46-164 6-131 (258)
280 PRK05557 fabG 3-ketoacyl-(acyl 96.9 0.0095 2.1E-07 52.6 10.3 116 45-164 4-142 (248)
281 PRK06057 short chain dehydroge 96.9 0.0058 1.3E-07 55.0 9.0 34 47-82 8-41 (255)
282 PRK14806 bifunctional cyclohex 96.9 0.0078 1.7E-07 63.1 11.1 92 47-163 4-97 (735)
283 KOG2666 UDP-glucose/GDP-mannos 96.9 0.0071 1.5E-07 56.8 9.4 108 46-160 1-123 (481)
284 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0087 1.9E-07 56.4 10.4 102 44-169 176-279 (311)
285 PRK12746 short chain dehydroge 96.9 0.022 4.7E-07 51.0 12.5 114 47-164 7-147 (254)
286 PF01113 DapB_N: Dihydrodipico 96.9 0.012 2.6E-07 47.9 9.8 73 47-122 1-75 (124)
287 TIGR01745 asd_gamma aspartate- 96.9 0.0062 1.3E-07 58.7 9.3 71 47-123 1-73 (366)
288 TIGR01830 3oxo_ACP_reduc 3-oxo 96.8 0.019 4.1E-07 50.6 11.9 113 49-165 1-136 (239)
289 COG1088 RfbB dTDP-D-glucose 4, 96.8 0.012 2.7E-07 54.9 10.8 117 47-163 1-126 (340)
290 PRK05479 ketol-acid reductoiso 96.8 0.011 2.3E-07 56.4 10.7 68 43-122 14-81 (330)
291 PRK07063 short chain dehydroge 96.8 0.022 4.7E-07 51.3 12.4 116 46-164 7-145 (260)
292 PRK06171 sorbitol-6-phosphate 96.8 0.0099 2.1E-07 53.8 10.2 35 46-82 9-43 (266)
293 PRK07074 short chain dehydroge 96.8 0.01 2.3E-07 53.2 10.3 34 47-82 3-36 (257)
294 PRK06128 oxidoreductase; Provi 96.8 0.018 3.8E-07 53.5 12.1 115 46-164 55-192 (300)
295 PRK12935 acetoacetyl-CoA reduc 96.8 0.017 3.8E-07 51.4 11.6 115 46-164 6-143 (247)
296 PRK15059 tartronate semialdehy 96.8 0.0058 1.3E-07 57.1 8.8 64 47-123 1-64 (292)
297 PRK08339 short chain dehydroge 96.8 0.031 6.6E-07 50.9 13.4 115 46-164 8-144 (263)
298 cd00401 AdoHcyase S-adenosyl-L 96.8 0.012 2.5E-07 57.8 11.2 129 5-165 146-291 (413)
299 PRK06701 short chain dehydroge 96.8 0.038 8.1E-07 51.2 14.2 118 43-164 43-182 (290)
300 PRK06196 oxidoreductase; Provi 96.8 0.021 4.5E-07 53.4 12.6 112 46-163 26-155 (315)
301 PLN02350 phosphogluconate dehy 96.8 0.0063 1.4E-07 61.0 9.5 100 43-165 3-109 (493)
302 PRK06500 short chain dehydroge 96.8 0.033 7.1E-07 49.5 13.4 101 46-153 6-125 (249)
303 PRK08219 short chain dehydroge 96.8 0.0097 2.1E-07 52.1 9.7 73 46-125 3-82 (227)
304 PLN02780 ketoreductase/ oxidor 96.8 0.016 3.4E-07 54.7 11.7 34 47-82 54-87 (320)
305 PRK09242 tropinone reductase; 96.8 0.021 4.5E-07 51.3 12.1 77 47-125 10-99 (257)
306 PRK08265 short chain dehydroge 96.8 0.014 3.1E-07 52.8 11.0 35 46-82 6-40 (261)
307 TIGR02632 RhaD_aldol-ADH rhamn 96.8 0.034 7.3E-07 58.0 15.1 36 45-82 413-448 (676)
308 PRK07062 short chain dehydroge 96.8 0.032 7E-07 50.3 13.4 116 46-164 8-146 (265)
309 PRK08993 2-deoxy-D-gluconate 3 96.8 0.024 5.1E-07 51.0 12.3 116 45-164 9-145 (253)
310 COG0345 ProC Pyrroline-5-carbo 96.8 0.0089 1.9E-07 55.2 9.5 97 46-167 1-99 (266)
311 TIGR00873 gnd 6-phosphoglucona 96.8 0.0069 1.5E-07 60.4 9.5 101 48-168 1-105 (467)
312 PRK07825 short chain dehydroge 96.8 0.022 4.7E-07 51.8 12.0 112 45-164 4-137 (273)
313 PRK07097 gluconate 5-dehydroge 96.8 0.035 7.6E-07 50.2 13.4 118 44-166 8-148 (265)
314 PRK06101 short chain dehydroge 96.8 0.038 8.2E-07 49.3 13.4 114 47-164 2-128 (240)
315 PRK08226 short chain dehydroge 96.8 0.02 4.4E-07 51.5 11.7 103 46-152 6-126 (263)
316 PRK05867 short chain dehydroge 96.8 0.018 4E-07 51.6 11.4 114 46-163 9-145 (253)
317 PRK07577 short chain dehydroge 96.8 0.011 2.5E-07 52.1 9.8 34 47-82 4-37 (234)
318 PLN02260 probable rhamnose bio 96.8 0.011 2.4E-07 61.2 11.2 90 45-156 379-475 (668)
319 cd01065 NAD_bind_Shikimate_DH 96.8 0.0053 1.1E-07 51.1 7.2 72 46-125 19-92 (155)
320 COG1091 RfbD dTDP-4-dehydrorha 96.8 0.0089 1.9E-07 55.6 9.3 88 47-154 1-92 (281)
321 TIGR02415 23BDH acetoin reduct 96.8 0.016 3.5E-07 51.8 10.8 112 48-163 2-136 (254)
322 PRK06598 aspartate-semialdehyd 96.8 0.0087 1.9E-07 57.8 9.5 71 47-123 2-74 (369)
323 PRK06935 2-deoxy-D-gluconate 3 96.7 0.035 7.5E-07 50.0 13.0 35 46-82 15-49 (258)
324 PLN02494 adenosylhomocysteinas 96.7 0.014 3E-07 58.0 11.0 131 4-166 197-344 (477)
325 PRK06728 aspartate-semialdehyd 96.7 0.005 1.1E-07 59.0 7.7 74 43-123 2-77 (347)
326 KOG1371 UDP-glucose 4-epimeras 96.7 0.015 3.3E-07 54.8 10.6 109 46-158 2-123 (343)
327 COG0136 Asd Aspartate-semialde 96.7 0.0073 1.6E-07 57.3 8.6 73 46-123 1-75 (334)
328 PRK06463 fabG 3-ketoacyl-(acyl 96.7 0.019 4.1E-07 51.6 11.1 113 46-163 7-137 (255)
329 PLN02712 arogenate dehydrogena 96.7 0.011 2.3E-07 61.6 10.5 66 44-122 367-433 (667)
330 PRK07035 short chain dehydroge 96.7 0.028 6E-07 50.3 12.0 35 46-82 8-42 (252)
331 PRK08605 D-lactate dehydrogena 96.7 0.0066 1.4E-07 57.8 8.3 64 45-123 145-209 (332)
332 PRK06139 short chain dehydroge 96.7 0.017 3.8E-07 54.8 11.1 114 45-163 6-142 (330)
333 PRK05884 short chain dehydroge 96.7 0.0091 2E-07 53.0 8.7 34 47-82 1-34 (223)
334 cd05312 NAD_bind_1_malic_enz N 96.7 0.0054 1.2E-07 56.9 7.3 106 46-167 25-144 (279)
335 PLN03139 formate dehydrogenase 96.7 0.018 3.9E-07 56.0 11.2 101 43-168 196-298 (386)
336 TIGR01850 argC N-acetyl-gamma- 96.7 0.013 2.8E-07 56.2 10.1 74 47-123 1-77 (346)
337 PRK09134 short chain dehydroge 96.7 0.016 3.5E-07 52.2 10.3 114 45-162 8-144 (258)
338 PRK12743 oxidoreductase; Provi 96.7 0.11 2.5E-06 46.6 15.9 114 47-164 3-140 (256)
339 PRK14874 aspartate-semialdehyd 96.7 0.007 1.5E-07 57.7 8.2 71 46-123 1-72 (334)
340 PRK08628 short chain dehydroge 96.7 0.029 6.2E-07 50.4 11.8 102 46-151 7-125 (258)
341 PRK05786 fabG 3-ketoacyl-(acyl 96.7 0.018 3.8E-07 51.0 10.3 35 46-82 5-39 (238)
342 PRK06198 short chain dehydroge 96.7 0.044 9.5E-07 49.2 13.0 114 47-164 7-144 (260)
343 PRK08277 D-mannonate oxidoredu 96.7 0.13 2.8E-06 46.8 16.2 36 45-82 9-44 (278)
344 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0065 1.4E-07 53.0 7.3 75 46-123 28-106 (194)
345 PRK12824 acetoacetyl-CoA reduc 96.6 0.033 7.2E-07 49.3 12.0 114 47-164 3-139 (245)
346 PF02826 2-Hacid_dh_C: D-isome 96.6 0.013 2.8E-07 50.6 9.0 95 43-164 33-128 (178)
347 PRK05855 short chain dehydroge 96.6 0.015 3.3E-07 58.2 10.9 116 45-164 314-452 (582)
348 PRK08217 fabG 3-ketoacyl-(acyl 96.6 0.018 3.9E-07 51.2 10.2 36 45-82 4-39 (253)
349 TIGR02356 adenyl_thiF thiazole 96.6 0.018 3.8E-07 51.0 10.0 36 45-82 20-55 (202)
350 TIGR00936 ahcY adenosylhomocys 96.6 0.02 4.3E-07 56.0 11.1 131 4-165 138-284 (406)
351 PRK07060 short chain dehydroge 96.6 0.014 3E-07 51.8 9.4 115 45-163 8-136 (245)
352 PRK06949 short chain dehydroge 96.6 0.046 1E-06 48.9 12.9 35 46-82 9-43 (258)
353 PRK14194 bifunctional 5,10-met 96.6 0.014 3E-07 54.9 9.6 86 36-166 139-235 (301)
354 PRK06114 short chain dehydroge 96.6 0.021 4.5E-07 51.4 10.5 36 45-82 7-42 (254)
355 PRK13304 L-aspartate dehydroge 96.6 0.013 2.8E-07 54.1 9.2 69 46-123 1-70 (265)
356 PRK08642 fabG 3-ketoacyl-(acyl 96.6 0.049 1.1E-06 48.5 12.9 35 45-81 4-38 (253)
357 PF03949 Malic_M: Malic enzyme 96.6 0.01 2.3E-07 54.3 8.5 107 46-171 25-151 (255)
358 PRK07677 short chain dehydroge 96.6 0.061 1.3E-06 48.2 13.5 113 47-163 2-137 (252)
359 PRK12744 short chain dehydroge 96.6 0.12 2.5E-06 46.5 15.4 33 46-80 8-40 (257)
360 PLN02968 Probable N-acetyl-gam 96.6 0.0061 1.3E-07 59.2 7.1 77 44-123 36-113 (381)
361 PF00899 ThiF: ThiF family; I 96.6 0.014 3.1E-07 47.9 8.3 34 47-82 3-36 (135)
362 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.028 6.1E-07 48.5 10.4 33 48-82 1-33 (174)
363 PRK07109 short chain dehydroge 96.5 0.034 7.3E-07 52.8 11.9 113 46-163 8-143 (334)
364 cd05311 NAD_bind_2_malic_enz N 96.5 0.0097 2.1E-07 53.6 7.8 99 46-168 25-133 (226)
365 PRK05693 short chain dehydroge 96.5 0.025 5.4E-07 51.5 10.6 34 47-82 2-35 (274)
366 PRK12742 oxidoreductase; Provi 96.5 0.056 1.2E-06 47.7 12.6 34 46-81 6-39 (237)
367 PRK06077 fabG 3-ketoacyl-(acyl 96.5 0.037 7.9E-07 49.3 11.5 34 45-80 5-38 (252)
368 PRK06113 7-alpha-hydroxysteroi 96.5 0.073 1.6E-06 47.8 13.5 103 45-151 10-130 (255)
369 PRK09009 C factor cell-cell si 96.5 0.038 8.2E-07 48.9 11.4 71 47-125 1-78 (235)
370 PRK08220 2,3-dihydroxybenzoate 96.5 0.025 5.5E-07 50.4 10.4 36 45-82 7-42 (252)
371 PRK08589 short chain dehydroge 96.5 0.056 1.2E-06 49.3 12.8 113 46-164 6-141 (272)
372 PRK06947 glucose-1-dehydrogena 96.5 0.039 8.4E-07 49.1 11.5 33 46-80 2-34 (248)
373 cd00762 NAD_bind_malic_enz NAD 96.5 0.0067 1.5E-07 55.5 6.6 124 46-192 25-167 (254)
374 PRK13302 putative L-aspartate 96.5 0.019 4.1E-07 53.2 9.6 69 45-123 5-76 (271)
375 PRK05872 short chain dehydroge 96.5 0.017 3.7E-07 53.5 9.5 113 46-163 9-142 (296)
376 PLN02928 oxidoreductase family 96.5 0.012 2.6E-07 56.5 8.5 104 44-163 157-262 (347)
377 PF07993 NAD_binding_4: Male s 96.4 0.011 2.3E-07 53.6 7.5 112 51-163 1-135 (249)
378 PRK08936 glucose-1-dehydrogena 96.4 0.11 2.4E-06 46.8 14.1 115 46-164 7-145 (261)
379 PRK05671 aspartate-semialdehyd 96.4 0.011 2.3E-07 56.6 7.6 71 46-123 4-75 (336)
380 PRK07023 short chain dehydroge 96.4 0.023 5E-07 50.6 9.5 35 46-82 1-35 (243)
381 PRK08644 thiamine biosynthesis 96.4 0.028 6E-07 50.2 9.9 36 45-82 27-62 (212)
382 PRK07775 short chain dehydroge 96.4 0.069 1.5E-06 48.7 12.8 35 46-82 10-44 (274)
383 PLN02383 aspartate semialdehyd 96.4 0.011 2.3E-07 56.7 7.6 71 46-123 7-78 (344)
384 COG4221 Short-chain alcohol de 96.4 0.045 9.9E-07 49.7 11.1 118 47-166 7-142 (246)
385 PRK08306 dipicolinate synthase 96.4 0.018 3.8E-07 54.0 8.9 67 45-122 151-218 (296)
386 cd01483 E1_enzyme_family Super 96.4 0.043 9.2E-07 45.4 10.3 33 48-82 1-33 (143)
387 PRK08324 short chain dehydroge 96.4 0.032 7E-07 58.1 11.6 35 46-82 422-456 (681)
388 PF03435 Saccharop_dh: Sacchar 96.4 0.0036 7.8E-08 60.5 4.2 75 49-125 1-78 (386)
389 PRK05476 S-adenosyl-L-homocyst 96.4 0.037 8E-07 54.5 11.2 91 45-165 211-301 (425)
390 PRK08703 short chain dehydroge 96.4 0.069 1.5E-06 47.4 12.2 34 47-82 7-40 (239)
391 PLN02503 fatty acyl-CoA reduct 96.3 0.053 1.2E-06 55.7 12.7 118 45-163 118-268 (605)
392 PRK06125 short chain dehydroge 96.3 0.14 3.1E-06 46.0 14.3 114 46-163 7-139 (259)
393 TIGR02853 spore_dpaA dipicolin 96.3 0.018 3.8E-07 53.8 8.4 96 45-168 150-246 (287)
394 PRK08177 short chain dehydroge 96.3 0.026 5.6E-07 49.8 9.1 34 47-82 2-35 (225)
395 TIGR01692 HIBADH 3-hydroxyisob 96.3 0.016 3.4E-07 53.9 8.0 61 51-123 1-61 (288)
396 PRK12747 short chain dehydroge 96.3 0.26 5.7E-06 44.0 15.8 33 46-80 4-36 (252)
397 PRK14106 murD UDP-N-acetylmura 96.3 0.036 7.8E-07 54.5 10.7 124 45-179 4-132 (450)
398 PRK08040 putative semialdehyde 96.2 0.013 2.7E-07 56.1 7.1 72 45-123 3-75 (336)
399 PRK06953 short chain dehydroge 96.2 0.025 5.4E-07 49.8 8.6 113 47-164 2-130 (222)
400 PRK06123 short chain dehydroge 96.2 0.079 1.7E-06 47.0 11.8 34 47-82 3-36 (248)
401 PRK12475 thiamine/molybdopteri 96.2 0.035 7.6E-07 53.1 9.9 36 45-82 23-58 (338)
402 PRK07578 short chain dehydroge 96.2 0.041 8.9E-07 47.5 9.6 104 47-163 1-111 (199)
403 PRK00048 dihydrodipicolinate r 96.2 0.044 9.5E-07 50.3 10.2 68 46-122 1-68 (257)
404 PRK08862 short chain dehydroge 96.2 0.16 3.5E-06 45.3 13.7 36 45-82 4-39 (227)
405 KOG1205 Predicted dehydrogenas 96.2 0.069 1.5E-06 49.7 11.5 120 47-170 13-156 (282)
406 TIGR01035 hemA glutamyl-tRNA r 96.2 0.019 4.2E-07 56.3 8.2 105 44-169 178-283 (417)
407 PRK07831 short chain dehydroge 96.2 0.15 3.3E-06 45.9 13.6 35 46-82 17-52 (262)
408 COG0002 ArgC Acetylglutamate s 96.2 0.013 2.8E-07 55.7 6.6 75 45-122 1-78 (349)
409 PRK08416 7-alpha-hydroxysteroi 96.2 0.39 8.4E-06 43.3 16.2 34 45-80 7-40 (260)
410 PRK06200 2,3-dihydroxy-2,3-dih 96.2 0.039 8.6E-07 49.8 9.6 35 46-82 6-40 (263)
411 TIGR00465 ilvC ketol-acid redu 96.1 0.051 1.1E-06 51.4 10.7 65 46-122 3-67 (314)
412 PRK12938 acetyacetyl-CoA reduc 96.1 0.073 1.6E-06 47.3 11.2 31 47-79 4-34 (246)
413 PRK07201 short chain dehydroge 96.1 0.051 1.1E-06 55.8 11.5 115 44-163 369-508 (657)
414 TIGR02371 ala_DH_arch alanine 96.1 0.024 5.1E-07 53.9 8.2 73 45-123 127-201 (325)
415 PRK06940 short chain dehydroge 96.1 0.087 1.9E-06 48.2 11.8 99 48-153 4-114 (275)
416 PRK08618 ornithine cyclodeamin 96.1 0.025 5.4E-07 53.7 8.4 74 45-123 126-201 (325)
417 TIGR01327 PGDH D-3-phosphoglyc 96.1 0.033 7.1E-07 56.4 9.6 98 45-168 137-236 (525)
418 PRK08291 ectoine utilization p 96.1 0.03 6.4E-07 53.3 8.8 74 45-123 131-206 (330)
419 PRK07688 thiamine/molybdopteri 96.1 0.046 9.9E-07 52.3 10.0 36 45-82 23-58 (339)
420 PRK08063 enoyl-(acyl carrier p 96.1 0.091 2E-06 46.7 11.4 34 47-82 5-39 (250)
421 PRK06718 precorrin-2 dehydroge 96.0 0.062 1.3E-06 47.6 10.0 71 45-123 9-79 (202)
422 PRK13581 D-3-phosphoglycerate 96.0 0.033 7.1E-07 56.4 9.3 97 45-168 139-237 (526)
423 TIGR01829 AcAcCoA_reduct aceto 96.0 0.11 2.4E-06 45.8 11.7 31 48-80 2-32 (242)
424 cd00757 ThiF_MoeB_HesA_family 96.0 0.058 1.2E-06 48.5 9.9 35 46-82 21-55 (228)
425 PRK08261 fabG 3-ketoacyl-(acyl 96.0 0.082 1.8E-06 52.0 11.8 117 46-164 210-343 (450)
426 TIGR02685 pter_reduc_Leis pter 96.0 0.25 5.4E-06 44.7 14.2 31 48-80 3-33 (267)
427 PRK08017 oxidoreductase; Provi 96.0 0.033 7.1E-07 49.8 8.2 34 47-82 3-36 (256)
428 PRK06407 ornithine cyclodeamin 96.0 0.035 7.5E-07 52.2 8.5 74 45-123 116-191 (301)
429 PRK07792 fabG 3-ketoacyl-(acyl 96.0 0.1 2.3E-06 48.6 11.7 78 45-126 11-101 (306)
430 PTZ00075 Adenosylhomocysteinas 96.0 0.032 6.9E-07 55.5 8.6 90 45-165 253-343 (476)
431 PRK00436 argC N-acetyl-gamma-g 95.9 0.023 5.1E-07 54.3 7.4 35 46-80 2-36 (343)
432 PRK06483 dihydromonapterin red 95.9 0.11 2.4E-06 46.0 11.3 35 46-82 2-36 (236)
433 TIGR01831 fabG_rel 3-oxoacyl-( 95.9 0.12 2.6E-06 45.6 11.6 114 49-166 1-138 (239)
434 PRK05600 thiamine biosynthesis 95.9 0.023 5E-07 55.0 7.4 65 16-82 4-75 (370)
435 COG1052 LdhA Lactate dehydroge 95.9 0.1 2.2E-06 49.6 11.6 94 43-163 143-236 (324)
436 PRK00045 hemA glutamyl-tRNA re 95.9 0.036 7.9E-07 54.5 8.8 106 44-169 180-286 (423)
437 PRK07340 ornithine cyclodeamin 95.9 0.04 8.6E-07 51.8 8.5 71 45-123 124-197 (304)
438 cd01079 NAD_bind_m-THF_DH NAD 95.8 0.04 8.7E-07 48.5 7.8 76 44-125 60-137 (197)
439 PRK15438 erythronate-4-phospha 95.8 0.041 8.9E-07 53.4 8.6 62 45-123 115-176 (378)
440 PF02423 OCD_Mu_crystall: Orni 95.8 0.028 6.1E-07 53.1 7.3 71 46-123 128-201 (313)
441 smart00859 Semialdhyde_dh Semi 95.8 0.11 2.3E-06 41.7 9.7 72 48-123 1-74 (122)
442 TIGR02355 moeB molybdopterin s 95.8 0.085 1.8E-06 48.0 10.0 35 46-82 24-58 (240)
443 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.04 8.8E-07 47.4 7.4 56 44-125 42-98 (168)
444 PRK05599 hypothetical protein; 95.8 0.66 1.4E-05 41.6 15.8 116 47-166 1-139 (246)
445 KOG0409 Predicted dehydrogenas 95.8 0.033 7.1E-07 52.1 7.2 96 46-153 35-147 (327)
446 PRK00257 erythronate-4-phospha 95.7 0.045 9.7E-07 53.2 8.4 62 45-123 115-176 (381)
447 TIGR01296 asd_B aspartate-semi 95.7 0.021 4.5E-07 54.6 6.0 69 48-123 1-70 (339)
448 KOG1201 Hydroxysteroid 17-beta 95.7 0.16 3.4E-06 47.6 11.5 118 40-163 32-172 (300)
449 PRK06436 glycerate dehydrogena 95.7 0.047 1E-06 51.4 8.2 96 44-169 120-217 (303)
450 PRK05690 molybdopterin biosynt 95.7 0.12 2.5E-06 47.2 10.6 35 46-82 32-66 (245)
451 PRK06141 ornithine cyclodeamin 95.7 0.056 1.2E-06 51.1 8.8 72 45-123 124-198 (314)
452 PRK06901 aspartate-semialdehyd 95.7 0.029 6.3E-07 53.1 6.6 69 46-123 3-73 (322)
453 COG1064 AdhP Zn-dependent alco 95.6 0.31 6.8E-06 46.5 13.5 143 27-203 150-299 (339)
454 TIGR02992 ectoine_eutC ectoine 95.6 0.057 1.2E-06 51.2 8.6 73 46-123 129-203 (326)
455 PRK06484 short chain dehydroge 95.6 0.085 1.8E-06 52.7 10.2 35 46-82 5-39 (520)
456 cd01485 E1-1_like Ubiquitin ac 95.6 0.1 2.2E-06 46.0 9.5 35 46-82 19-53 (198)
457 PF01262 AlaDh_PNT_C: Alanine 95.6 0.0068 1.5E-07 51.9 2.0 45 34-82 9-53 (168)
458 PRK06484 short chain dehydroge 95.6 0.25 5.4E-06 49.3 13.5 116 46-165 269-402 (520)
459 PRK03659 glutathione-regulated 95.6 0.17 3.7E-06 52.1 12.5 138 46-215 400-542 (601)
460 PF02882 THF_DHG_CYH_C: Tetrah 95.6 0.078 1.7E-06 45.3 8.4 56 45-125 35-90 (160)
461 COG0289 DapB Dihydrodipicolina 95.6 0.13 2.9E-06 47.2 10.4 74 46-120 2-75 (266)
462 PRK08664 aspartate-semialdehyd 95.6 0.046 1E-06 52.4 7.8 74 45-122 2-84 (349)
463 TIGR01470 cysG_Nterm siroheme 95.5 0.11 2.3E-06 46.2 9.5 70 46-123 9-78 (205)
464 KOG2711 Glycerol-3-phosphate d 95.5 0.2 4.3E-06 47.7 11.5 125 42-186 17-167 (372)
465 PRK07041 short chain dehydroge 95.5 0.089 1.9E-06 46.2 8.9 107 51-163 2-123 (230)
466 TIGR00518 alaDH alanine dehydr 95.5 0.061 1.3E-06 52.1 8.4 78 42-125 163-241 (370)
467 PRK12557 H(2)-dependent methyl 95.5 0.16 3.5E-06 48.6 11.1 55 59-122 32-89 (342)
468 PRK15409 bifunctional glyoxyla 95.5 0.074 1.6E-06 50.5 8.7 93 44-163 143-236 (323)
469 COG0111 SerA Phosphoglycerate 95.4 0.12 2.6E-06 49.2 9.9 64 46-122 142-205 (324)
470 PRK13301 putative L-aspartate 95.4 0.12 2.7E-06 47.6 9.6 95 46-167 2-99 (267)
471 PRK00421 murC UDP-N-acetylmura 95.4 0.18 4E-06 49.9 11.6 127 45-184 6-135 (461)
472 COG0702 Predicted nucleoside-d 95.4 0.1 2.2E-06 46.9 9.0 72 47-125 1-74 (275)
473 PF03059 NAS: Nicotianamine sy 95.4 0.057 1.2E-06 50.2 7.4 104 45-161 120-228 (276)
474 PRK06719 precorrin-2 dehydroge 95.4 0.26 5.7E-06 41.8 10.9 67 45-122 12-78 (157)
475 PLN00203 glutamyl-tRNA reducta 95.3 0.084 1.8E-06 53.4 9.1 107 45-169 265-375 (519)
476 PRK09424 pntA NAD(P) transhydr 95.3 0.097 2.1E-06 52.8 9.3 106 42-165 161-287 (509)
477 smart00822 PKS_KR This enzymat 95.3 0.23 5E-06 40.8 10.4 112 48-163 2-135 (180)
478 PRK08223 hypothetical protein; 95.3 0.08 1.7E-06 49.5 8.1 35 46-82 27-61 (287)
479 PRK09496 trkA potassium transp 95.3 0.13 2.8E-06 50.4 10.1 72 47-123 1-74 (453)
480 PRK12748 3-ketoacyl-(acyl-carr 95.3 0.67 1.5E-05 41.5 14.0 35 45-81 4-40 (256)
481 PLN02306 hydroxypyruvate reduc 95.3 0.12 2.5E-06 50.4 9.5 102 45-163 164-272 (386)
482 PRK07589 ornithine cyclodeamin 95.2 0.076 1.6E-06 51.0 8.1 73 45-123 128-202 (346)
483 KOG4039 Serine/threonine kinas 95.2 0.066 1.4E-06 46.7 6.8 114 45-167 17-135 (238)
484 PRK14192 bifunctional 5,10-met 95.2 0.068 1.5E-06 49.9 7.5 56 45-125 158-213 (283)
485 TIGR03443 alpha_am_amid L-amin 95.2 0.25 5.5E-06 55.3 13.2 118 45-163 970-1109(1389)
486 PRK01438 murD UDP-N-acetylmura 95.2 0.22 4.9E-06 49.4 11.5 123 47-179 17-146 (480)
487 PRK06046 alanine dehydrogenase 95.2 0.083 1.8E-06 50.2 8.0 72 46-123 129-202 (326)
488 PRK09730 putative NAD(P)-bindi 95.1 0.23 4.9E-06 43.9 10.4 33 47-81 2-35 (247)
489 TIGR01289 LPOR light-dependent 95.1 0.36 7.7E-06 45.2 12.2 114 46-163 3-142 (314)
490 PF00106 adh_short: short chai 95.1 0.27 5.9E-06 40.8 10.3 116 48-167 2-138 (167)
491 PRK06823 ornithine cyclodeamin 95.1 0.12 2.6E-06 48.9 9.0 73 45-123 127-201 (315)
492 KOG1208 Dehydrogenases with di 95.1 0.54 1.2E-05 44.5 13.3 118 44-163 33-171 (314)
493 cd01492 Aos1_SUMO Ubiquitin ac 95.1 0.28 6E-06 43.2 10.6 35 46-82 21-55 (197)
494 COG0686 Ald Alanine dehydrogen 95.1 0.064 1.4E-06 50.5 6.7 111 3-125 131-242 (371)
495 PRK06079 enoyl-(acyl carrier p 95.0 0.12 2.5E-06 46.7 8.3 34 47-82 8-43 (252)
496 PLN03129 NADP-dependent malic 95.0 0.085 1.8E-06 53.6 8.0 103 46-166 321-439 (581)
497 PRK08762 molybdopterin biosynt 95.0 0.15 3.3E-06 49.3 9.6 34 46-81 135-168 (376)
498 PRK07877 hypothetical protein; 95.0 0.11 2.4E-06 54.5 9.0 75 46-122 107-204 (722)
499 PRK14179 bifunctional 5,10-met 95.0 0.088 1.9E-06 49.1 7.5 65 36-125 138-212 (284)
500 PRK13303 L-aspartate dehydroge 95.0 0.28 6.2E-06 45.1 10.9 69 46-123 1-70 (265)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.5e-62 Score=456.10 Aligned_cols=256 Identities=71% Similarity=1.127 Sum_probs=236.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
|||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||+|+..+..++.+.+++|++++++|||+||+|||.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 59999998899999999999999999999999998779999999999744566653233456699999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHH
Q 021932 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV 206 (305)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~ 206 (305)
++|++|+|++..|++++++++++|++++|++|++++|||+|+||+++++++++.+++|++||||+|.|||+|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcceeEEEEccc-CCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHH
Q 021932 207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285 (305)
Q Consensus 207 l~v~~~~V~~~vlG~h-g~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~ 285 (305)
+|+++++|++|||||| |+ ++||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.++++++++|+
T Consensus 161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl 239 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL 239 (310)
T ss_pred hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999 88 999999999875456666689999999999999999876789999999999999999999
Q ss_pred ccCCCCCceeEEEEEeeC
Q 021932 286 RGLRGDAGVIECAYVAST 303 (305)
Q Consensus 286 ~~~~~~~~i~~~a~v~s~ 303 (305)
+|+++++.+++|+|++++
T Consensus 240 ~~~~~~~~~~~~s~~~~~ 257 (310)
T cd01337 240 RGLKGEKGVIECAYVESD 257 (310)
T ss_pred HhcCCCcceEEEEEEecc
Confidence 998888889999998864
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.6e-60 Score=446.33 Aligned_cols=256 Identities=64% Similarity=1.039 Sum_probs=233.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~ 127 (305)
||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||+|......++.+.+.++++++++|||+||+++|.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999999999999999999999999999999988889999999986434555432222456899999999999999999
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHh
Q 021932 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL 207 (305)
Q Consensus 128 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l 207 (305)
+|++|+|++..|++++++++++|.+++|+++++++|||+|++++++++++++.+++|++||||+|.|||+||+++||+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999889999999999999999998899999999999999
Q ss_pred CCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHHcc
Q 021932 208 GLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287 (305)
Q Consensus 208 ~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~ 287 (305)
+++|++|++|||||||+++++|+||++++...++++++++|.++|+++|++|++.|.|||+|+||+|.++++++++|+++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~ 240 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999999999987699999999986444666668999999999999999986678999999999999999999988
Q ss_pred CCCCCceeEEEEEeeC
Q 021932 288 LRGDAGVIECAYVAST 303 (305)
Q Consensus 288 ~~~~~~i~~~a~v~s~ 303 (305)
.++++.++||+|+++.
T Consensus 241 ~~d~~~v~~~s~~~g~ 256 (312)
T TIGR01772 241 LKGEEGVVECAYVESD 256 (312)
T ss_pred hCCCccEEEEEEEccC
Confidence 7778899999998753
No 3
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1.7e-58 Score=434.22 Aligned_cols=267 Identities=79% Similarity=1.234 Sum_probs=244.7
Q ss_pred cccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932 36 MDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 36 ~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a 115 (305)
-.|+.+++..+.||+||||+|+||+++++.|+.+++++||+|+|++++.|+++||.|+.....+..+.+++|++++++||
T Consensus 8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence 36888888888999999999999999999999999999999999988899999999987655666544566788999999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD 195 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Ld 195 (305)
|+||++||.|+++|++|+|++..|.++++++++++++++|+++++++|||+|.+++++++++++.+++||+||||++.||
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD 167 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD 167 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence 99999999999999999999999999999999999999999999999999996666666677899999999999999999
Q ss_pred hHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHH
Q 021932 196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275 (305)
Q Consensus 196 s~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~ 275 (305)
++||++++|+++|+++.+|+++|+||||+++|||+||++.+...++++++++|.++++++|++|+++|.|||+|+||+|.
T Consensus 168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~ 247 (323)
T PLN00106 168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY 247 (323)
T ss_pred HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence 99999999999999999999999999976699999999976434666678999999999999999986678999999999
Q ss_pred HHHHHHHHHHccCCCCCceeEEEEEee
Q 021932 276 AAAKFADACLRGLRGDAGVIECAYVAS 302 (305)
Q Consensus 276 a~~~~~~ai~~~~~~~~~i~~~a~v~s 302 (305)
++++|+++|++|+++++.++||||+.+
T Consensus 248 a~~~ii~ail~~~~~~~~v~~~s~~~~ 274 (323)
T PLN00106 248 AAARFADACLRGLNGEADVVECSYVQS 274 (323)
T ss_pred HHHHHHHHHHhccCCCceEEEEEEECc
Confidence 999999999999988989999998865
No 4
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.8e-58 Score=428.57 Aligned_cols=240 Identities=42% Similarity=0.638 Sum_probs=215.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+||+|||| |+||+++|++|+..++.+|++|+|+++ ++|.++||.|+... ...+.. ++.+| ++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~y-~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGDY-EDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCCh-hhhcCCCEEEEeC
Confidence 59999999 999999999998888888999999986 79999999999743 234432 22455 8899999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT 201 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~ 201 (305)
|.||||||+|+|++..|++|+++++++|.+++||++++|+|||+|+|||++ |+.+++|++||||+ |.|||+||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875 78899999999999 8999999999
Q ss_pred HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHH
Q 021932 202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273 (305)
Q Consensus 202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~ 273 (305)
+||++++++|++|++||+||||+ ++||+||++++.+ . .++++++++.++||++|++|+++| |.| |.||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 99999999999999999999999 9999999999875 1 223567899999999999999987 444 99999
Q ss_pred HHHHHHHHHHHHccCCCCCceeEEEE
Q 021932 274 AYAAAKFADACLRGLRGDAGVIECAY 299 (305)
Q Consensus 274 A~a~~~~~~ai~~~~~~~~~i~~~a~ 299 (305)
|.++++++++|++|+ +.++|||-
T Consensus 231 A~a~a~~~~ail~d~---~~vl~~s~ 253 (313)
T COG0039 231 AAALARMVEAILRDE---KRVLPVSV 253 (313)
T ss_pred HHHHHHHHHHHHcCC---CceEEEEE
Confidence 999999999999997 46777653
No 5
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.1e-56 Score=400.87 Aligned_cols=237 Identities=25% Similarity=0.404 Sum_probs=217.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC---ceEEEEecCCCHHHHhCCCCEEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
..||+|+|+ |+||.++|+.++.+++.+|++|+|+++ ++|++|||+|...+ +++.. ..|| .+.+++++||+
T Consensus 20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvIi 94 (332)
T KOG1495|consen 20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVII 94 (332)
T ss_pred CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEEE
Confidence 459999999 999999999999999999999999988 89999999998743 34443 4576 78999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA 199 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~ 199 (305)
|||..+++|++|++++++|+.+++.+++++.+|.||++++++|||+|+|||++ ||.+|||++||||. |+|||+||
T Consensus 95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRF 170 (332)
T KOG1495|consen 95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARF 170 (332)
T ss_pred ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHH
Confidence 99999999999999999999999999999999999999999999999999864 99999999999999 89999999
Q ss_pred HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC------------CCChhHHHHHHHHHHhchhhhhccccCCC
Q 021932 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267 (305)
Q Consensus 200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg 267 (305)
|++++++||++|+++++||+||||| +.||+||...+.+ ..+++.|+++-++|...+|+|+++| |
T Consensus 171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---G 246 (332)
T KOG1495|consen 171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---G 246 (332)
T ss_pred HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 9999999999999999999999999 8999999998853 2356679999999999999999975 8
Q ss_pred CchhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932 268 SATLSMAYAAAKFADACLRGLRGDAGVIECA 298 (305)
Q Consensus 268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a 298 (305)
+|+|++|.++++++++|++|++ .+.|.+
T Consensus 247 yTswaIglsva~l~~ail~n~~---~i~~Vs 274 (332)
T KOG1495|consen 247 YTSWAIGLSVADLAQAILRNLR---RIHPVS 274 (332)
T ss_pred chHHHHHHHHHHHHHHHHhCcC---ceeeee
Confidence 9999999999999999999986 455554
No 6
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.8e-56 Score=399.01 Aligned_cols=284 Identities=69% Similarity=1.070 Sum_probs=262.0
Q ss_pred hHHHHHHHhhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh
Q 021932 9 NQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 88 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~ 88 (305)
.+++-+.++++.+ .+.+.+|+ ...+..||+|.||+|-+|+.++++|+++++++++.|||+..+.|.+.
T Consensus 3 ~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaa 70 (345)
T KOG1494|consen 3 LKSLIRSSASLSS-----GPKRVFSS-------GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAA 70 (345)
T ss_pred hHHHHHhhhhhcc-----CCcccccc-------cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccc
Confidence 3456666676632 22332333 44445599999999999999999999999999999999988999999
Q ss_pred hhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932 89 DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (305)
Q Consensus 89 DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~ 168 (305)
||+|..+...+.++.+...+++++++||+|||.||+||||||+|.|++..|+.|+++++..+.++||+|.+.++|||+|.
T Consensus 71 DlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNs 150 (345)
T KOG1494|consen 71 DLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNS 150 (345)
T ss_pred cccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccc
Confidence 99999988889988877789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCC-cceeEEEEcccCCcceeeccccCCCCCCCChhHHHH
Q 021932 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247 (305)
Q Consensus 169 lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~ 247 (305)
+++++++++++.+.|+|+|+||+|.||..|++.++++.++++| ++++++|+|+|.+.|++|++|+.++...+++++++.
T Consensus 151 tVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~ 230 (345)
T KOG1494|consen 151 TVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEA 230 (345)
T ss_pred cchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 559999999998889999999999877789999999
Q ss_pred HHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEeeCC
Q 021932 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304 (305)
Q Consensus 248 i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s~~ 304 (305)
++.+++.+|.|++++|.|+|++.+|+|+|.++++.+++++++|+.++++|+||+|.+
T Consensus 231 Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~ 287 (345)
T KOG1494|consen 231 LTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPV 287 (345)
T ss_pred HHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccc
Confidence 999999999999999999999999999999999999999999999999999999975
No 7
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=9.1e-56 Score=415.42 Aligned_cols=258 Identities=63% Similarity=0.993 Sum_probs=231.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.+++||+||||+|+||+++++.|+..++++||+|+|++.+.|+++||.|+.....+..+....+++++++|+|+||+++|
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 35669999998899999999999989999999999996589999999998653344433221343589999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHH
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV 203 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~l 203 (305)
.+++++++|.+++..|++++++++++|++++|+++++++|||+|+|++++.+.+++.+++||+||||++.|||+||+++|
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l 165 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV 165 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987555578899999999999889999999999
Q ss_pred HHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHH
Q 021932 204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283 (305)
Q Consensus 204 a~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~a 283 (305)
|++++++|++|++|||||||++++||+||++.+ +++++++++|.++|+++|++|++.|.|||+|+||+|.++++++++
T Consensus 166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a 243 (321)
T PTZ00325 166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS 243 (321)
T ss_pred HHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence 999999999999999999998569999999933 577777999999999999999998867899999999999999999
Q ss_pred HHccCCCCCceeEEEEEeeC
Q 021932 284 CLRGLRGDAGVIECAYVAST 303 (305)
Q Consensus 284 i~~~~~~~~~i~~~a~v~s~ 303 (305)
|++|+.+++.+++|+|+++.
T Consensus 244 il~~~~~~~~v~~~~~~~g~ 263 (321)
T PTZ00325 244 VLKALRGDKGIVECAFVESD 263 (321)
T ss_pred HHhhcCCCCCeEEEEEEecC
Confidence 99998888899999998753
No 8
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.9e-56 Score=416.36 Aligned_cols=238 Identities=28% Similarity=0.406 Sum_probs=213.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC---ceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
||+|||+ |+||+++|+.|+.+++++||+|+|+++ ++|+++||.|...+ ..++... +|| ++++|||+||+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y-~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDY-DDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCH-HHhCCCCEEEECC
Confidence 7999999 999999999999999999999999987 79999999997542 2455442 465 8899999999999
Q ss_pred CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932 123 GVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA 199 (305)
Q Consensus 123 g~~~~~g~~--r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~ 199 (305)
|.|+++||+ |+|++..|++|+++++++|++++|+++++++|||+|+|||++ ++.+|||++||||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999999875 77889999999999 89999999
Q ss_pred HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----C-----ChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L-----TPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269 (305)
Q Consensus 200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~-----~~~~~~~i~~~v~~~g~~i~~~k~gkg~t 269 (305)
++++|+++|++|++|++|||||||+ +++|+||++++++ + + ++.++++|.++++++|++|++. ||+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCee
Confidence 9999999999999999999999999 9999999999865 1 1 1224789999999999999995 5899
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 270 TLSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
+|++|.++++++++|+.|. +.+++|+..
T Consensus 229 ~~~ia~a~~~ii~ail~d~---~~v~~vsv~ 256 (307)
T cd05290 229 NAGIAKSASRLIKAILLDE---RSILPVCTL 256 (307)
T ss_pred hHHHHHHHHHHHHHHHhCC---CeEEEEEEe
Confidence 9999999999999999885 467776553
No 9
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-54 Score=407.51 Aligned_cols=254 Identities=62% Similarity=0.965 Sum_probs=229.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
|||+||||+|.||+++++.|.. .+...+|+|+|+++ ..|+++|+.|......++.+. .+|++++++|+|+||+|+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~-~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFS-GEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeC-CCCHHHHcCCCCEEEEcCCC
Confidence 6999999999999999998865 56778999999977 677889999863223444321 34666899999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHH
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA 204 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la 204 (305)
+++++++|.+++..|++++++++++|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHH
Q 021932 205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284 (305)
Q Consensus 205 ~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai 284 (305)
++++++|++|+++||||||++++||+||++ -+.+++++++++|.++|+++|++|+++|.|||+|+||+|.++++++++|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai 238 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999777999999999 3235777779999999999999999987678999999999999999999
Q ss_pred HccCCCCCceeEEEEEee
Q 021932 285 LRGLRGDAGVIECAYVAS 302 (305)
Q Consensus 285 ~~~~~~~~~i~~~a~v~s 302 (305)
++++++++.++||+|+.+
T Consensus 239 ~~~~~~~~~v~~~~~~~~ 256 (312)
T PRK05086 239 VRALQGEQGVVECAYVEG 256 (312)
T ss_pred HhcCCCCCcEEEEEEEec
Confidence 999988999999998865
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=8.7e-55 Score=409.56 Aligned_cols=245 Identities=29% Similarity=0.396 Sum_probs=215.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC-C-ceEEEEecCCCHHHHhC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALT 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~ 113 (305)
+|.||+||||+|+||+++++.|+..++++ ||+|+|+++ ++|+++||+|+.. . ..++.. .++ +++++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFK 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhC
Confidence 46799999988999999999999999999 999999954 6999999999862 1 223332 234 48999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV 191 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~ 191 (305)
|||+||+|||.|+++||+|+|++..|++++++++++|++++| +++++++|||+|+|||++ ++.+ |||++||||+
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~ 154 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSAM 154 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence 999999999999999999999999999999999999999998 999999999999999875 6778 9999999999
Q ss_pred eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhccc
Q 021932 192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK 263 (305)
Q Consensus 192 t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k 263 (305)
|.|||+|||++||++++++|++|+ .+||||||+ +++|+||++++.+ + +++++ +++|.++++++|++|++.
T Consensus 155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~- 232 (323)
T TIGR01759 155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEA- 232 (323)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhc-
Confidence 999999999999999999999995 679999999 9999999999864 1 33333 579999999999999995
Q ss_pred cCCCCchh-HHHHHHHHHHHHHHccCCCCCceeEEE-EEe
Q 021932 264 TGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVA 301 (305)
Q Consensus 264 ~gkg~t~~-s~A~a~~~~~~ai~~~~~~~~~i~~~a-~v~ 301 (305)
||+|+| ++|.++++++++|++|+.. +.++||| |++
T Consensus 233 --kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~ 269 (323)
T TIGR01759 233 --RGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSD 269 (323)
T ss_pred --cCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeC
Confidence 588999 4779999999999999732 4599998 544
No 11
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.5e-54 Score=406.60 Aligned_cols=240 Identities=26% Similarity=0.376 Sum_probs=214.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCce-EEEEecCCCHHHHhCCCCEEEEcC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~-v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
.+||+|||+ |+||+++|+.|+..++++||+|+|+++ +.|+++||+|+..+.. ... ..++|| ++++|||+||+++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v-~~~~dy-~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKI-EADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEE-EECCCH-HHhCCCCEEEECC
Confidence 459999998 999999999999999999999999987 7899999999873221 222 224577 5799999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT 201 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~ 201 (305)
|.++++||+|+|++..|++++++++++|++++|+++++++|||+|+||+++ ++.+|+|++||||+ |.||++|+++
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765 67789999999999 8999999999
Q ss_pred HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C-----------CChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932 202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269 (305)
Q Consensus 202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~-----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t 269 (305)
++|+++++++++|+++||||||+ +++|+||++++++ + .+++++++|.++++++|++|++. ||+|
T Consensus 156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t 231 (312)
T cd05293 156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYT 231 (312)
T ss_pred HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence 99999999999999999999999 9999999999864 1 12345889999999999999995 5899
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932 270 TLSMAYAAAKFADACLRGLRGDAGVIECAY 299 (305)
Q Consensus 270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~ 299 (305)
+||+|.++++++++|+.|.+ .+++|+.
T Consensus 232 ~~~~a~a~~~ii~ail~d~~---~~~~vsv 258 (312)
T cd05293 232 SWAIGLSVADLVDAILRNTG---RVHSVST 258 (312)
T ss_pred hHHHHHHHHHHHHHHHcCCC---eEEEEEE
Confidence 99999999999999998864 6777754
No 12
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=2.4e-54 Score=410.11 Aligned_cols=240 Identities=24% Similarity=0.401 Sum_probs=215.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+||+|||+ |+||+++|+.|+..++++||+|+|+++ +.|+++||+|+..+ ...+.. .++|| ++++|||+||++||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence 69999998 999999999999999999999999987 78999999998632 223332 23466 67999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHH
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF 202 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~ 202 (305)
.++++||+|+|++..|++++++++++|+++||+++++++|||+|++|+++ ++.+|||++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 66779999999999 69999999999
Q ss_pred HHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C-----------CChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932 203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270 (305)
Q Consensus 203 la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~-----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~ 270 (305)
||+++|+++++|+++||||||+ +++|+||++++.+ + +++++++++.++++++|++|++. ||+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---KG~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence 9999999999999999999998 9999999998853 1 23345789999999999999994 58999
Q ss_pred hHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 271 LSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
||+|.++++++++|++|+ +.++|||..
T Consensus 267 ~gia~a~a~ii~ail~d~---~~v~~vsv~ 293 (350)
T PLN02602 267 WAIGYSVASLVRSLLRDQ---RRIHPVSVL 293 (350)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEEEe
Confidence 999999999999999997 478888764
No 13
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-54 Score=405.58 Aligned_cols=244 Identities=23% Similarity=0.329 Sum_probs=215.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----Cchhhhhhhccc-CC-ceEEEEecCCCHHHHhC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMD-TN-AVVRGFLGQQQLEDALT 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~-~~-~~v~~~~~t~d~~~al~ 113 (305)
+|+||+||||+|+||+++|+.|...++++ ||+|+|+++ ++|+++||+|+. .. ..++.. +++ +++++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~ 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence 45699999988999999999999999998 999999954 689999999986 22 234432 345 48999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV 191 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~ 191 (305)
|||+||++||.++++|++|+|++..|++++++++++|++++ |+++++++|||+|+|||++ ++.+ |||++||||+
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~ 155 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTAM 155 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEee
Confidence 99999999999999999999999999999999999999988 7999999999999999875 5677 9999999999
Q ss_pred eehhhHHHHHHHHHHhCCCCcceeEE-EEcccCCcceeeccccCCCCCC-----CChhH--HHHHHHHHHhchhhhhccc
Q 021932 192 TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTEVVEAK 263 (305)
Q Consensus 192 t~Lds~R~~~~la~~l~v~~~~V~~~-vlG~hg~~t~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~i~~~k 263 (305)
|.|||+||+++||++|+++|++|++| ||||||+ +++|+||++++++. +++++ +++|.++++++|++|++.
T Consensus 156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~- 233 (326)
T PRK05442 156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA- 233 (326)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC-
Confidence 99999999999999999999999986 5999999 99999999999751 34443 578999999999999995
Q ss_pred cCCCCchhHHHHH-HHHHHHHHHccCCCCCceeEEEEE
Q 021932 264 TGAGSATLSMAYA-AAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 264 ~gkg~t~~s~A~a-~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
||+|+|++|.+ +++++++|++|.. ++.++|||.+
T Consensus 234 --kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~ 268 (326)
T PRK05442 234 --RGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVP 268 (326)
T ss_pred --cCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEE
Confidence 58999999999 5999999999953 3569999854
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.3e-53 Score=398.27 Aligned_cols=234 Identities=24% Similarity=0.421 Sum_probs=210.5
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
|||+ |+||+++|+.|+..++++||+|+|+++ ++|+++||+|+... ..++.. .+|| ++++|||+||+++|.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~~-~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGDY-SDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCCH-HHHCCCCEEEECCCCCC
Confidence 6898 999999999999999999999999987 79999999998632 234433 2465 89999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHHH
Q 021932 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAE 205 (305)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la~ 205 (305)
++||+|.|++..|++++++++++|++++|+++++++|||+|+||+++ ++.+++|++||||+ |.|||+|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 66789999999999 79999999999999
Q ss_pred HhCCCCcceeEEEEcccCCcceeeccccCCCCC-C---C-------ChhHHHHHHHHHHhchhhhhccccCCCCchhHHH
Q 021932 206 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S---L-------TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274 (305)
Q Consensus 206 ~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~---~-------~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A 274 (305)
+++++|++|+++||||||+ +++|+||++++++ + + ++.+++++.++++++|++|++. ||+|+|++|
T Consensus 153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHH
Confidence 9999999999999999999 9999999999864 1 2 1234679999999999999995 589999999
Q ss_pred HHHHHHHHHHHccCCCCCceeEEEE
Q 021932 275 YAAAKFADACLRGLRGDAGVIECAY 299 (305)
Q Consensus 275 ~a~~~~~~ai~~~~~~~~~i~~~a~ 299 (305)
+++++++++|++|+ +.++|||.
T Consensus 229 ~a~~~~i~ail~d~---~~v~~~s~ 250 (299)
T TIGR01771 229 MAVARIVEAILHDE---NRVLPVSA 250 (299)
T ss_pred HHHHHHHHHHHcCC---CcEEEEEE
Confidence 99999999999996 57999973
No 15
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-52 Score=392.38 Aligned_cols=241 Identities=25% Similarity=0.398 Sum_probs=216.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
..+||+|||| |.||+++++.|+..++++||+|+|+++ ++|+++||.|+..+ ..+... ++++ ++++|||+||++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~-~~~~~adivIit 80 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDY-SDCKDADLVVIT 80 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCH-HHhCCCCEEEEe
Confidence 3459999998 999999999999999999999999987 78999999998632 334443 2465 789999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHH
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN 200 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~ 200 (305)
+|.|+++|++|.|++..|+++++++++.+++++|+++++++|||+|++|+++ ++.+|+|++||||+ |.|||+|++
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~ 156 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFR 156 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765 56679999999999 789999999
Q ss_pred HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----------CCChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932 201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269 (305)
Q Consensus 201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t 269 (305)
+++|+++|++|++|+++||||||+ +++|+||++++++ .+++++++++.++++++|++|++. ||++
T Consensus 157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~t 232 (315)
T PRK00066 157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGAT 232 (315)
T ss_pred HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCee
Confidence 999999999999999999999999 9999999999854 134466889999999999999995 5899
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 270 TLSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
+|++|+++++++++|++++ +.++||+..
T Consensus 233 ~~~~a~~~~~i~~ail~~~---~~v~~~sv~ 260 (315)
T PRK00066 233 YYGIAMALARITKAILNNE---NAVLPVSAY 260 (315)
T ss_pred hHHHHHHHHHHHHHHHcCC---CeEEEEEEE
Confidence 9999999999999999985 478888754
No 16
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.6e-52 Score=394.49 Aligned_cols=242 Identities=31% Similarity=0.420 Sum_probs=212.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD 116 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aD 116 (305)
||+||||+|+||+++++.|+.+++++ +|+|+|+++ ++|+++||.|+.. ....... ..+ +++++|||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-~~~~~~aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-EEAFKDVD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-HHHhCCCC
Confidence 89999999999999999999999888 499999985 6899999999852 2223322 234 58999999
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC-CCCCcEEEeeeh
Q 021932 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT-YDPKRLLGVTML 194 (305)
Q Consensus 117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~-~p~~kviG~t~L 194 (305)
+||++||.|+++|++|+|++..|++++++++++|++++ |+++++++|||+|+|||++ ++.+| +|++||||+|.|
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~L 154 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTRL 154 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeHH
Confidence 99999999999999999999999999999999999996 9999999999999999875 67788 599999999999
Q ss_pred hhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCCC-C-------ChhH--HHHHHHHHHhchhhhhccc
Q 021932 195 DVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS-L-------TPTE--IDYLTDRIQNGGTEVVEAK 263 (305)
Q Consensus 195 ds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~~-~-------~~~~--~~~i~~~v~~~g~~i~~~k 263 (305)
||+|||++||++|+++|++|+ ++||||||+ +++|+||++++.+. + .+++ .++|.++++++|++|++.
T Consensus 155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~- 232 (323)
T cd00704 155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK- 232 (323)
T ss_pred HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc-
Confidence 999999999999999999995 689999999 99999999998641 1 2234 578999999999999995
Q ss_pred cCCCCchhH-HHHHHHHHHHHHHccCCCCCceeEEE-EEe
Q 021932 264 TGAGSATLS-MAYAAAKFADACLRGLRGDAGVIECA-YVA 301 (305)
Q Consensus 264 ~gkg~t~~s-~A~a~~~~~~ai~~~~~~~~~i~~~a-~v~ 301 (305)
||+|+|+ +|+++++++++|++|++++ .++||| |++
T Consensus 233 --kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~ 269 (323)
T cd00704 233 --RGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSP 269 (323)
T ss_pred --cCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeC
Confidence 5789996 6999999999999998766 499997 443
No 17
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=3.5e-52 Score=403.77 Aligned_cols=246 Identities=22% Similarity=0.252 Sum_probs=215.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHh
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~-------~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al 112 (305)
.++.||+||||+|+||+++|+.|+.+ +++.||+|+|+++ ++|++|||+|+.. ...+... +++| +++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~y-e~~ 174 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDPY-EVF 174 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCCH-HHh
Confidence 44679999999999999999999998 7778999999988 7999999999862 2234322 3455 899
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-hCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~-~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~ 191 (305)
+|||+||+++|.|+++||+|+|++..|++|+++++++|++ ++|++++|++|||+|+||+++ ++.++++++|+||+
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViGt 250 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFHA 250 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEEe
Confidence 9999999999999999999999999999999999999999 589999999999999999875 67789999999999
Q ss_pred -eehhhHHHHHHHHHHhCCCCcce-eEEEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhcc
Q 021932 192 -TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEA 262 (305)
Q Consensus 192 -t~Lds~R~~~~la~~l~v~~~~V-~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~ 262 (305)
|.|||+||+++||+++++++++| .+|||||||+ ++||+||++++++ + +++++ +++|.++++++|++|++.
T Consensus 251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~ 329 (444)
T PLN00112 251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK 329 (444)
T ss_pred eccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999 5699999999 9999999999965 2 33334 579999999999999994
Q ss_pred ccCCCCchh-HHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932 263 KTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECAYVA 301 (305)
Q Consensus 263 k~gkg~t~~-s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~ 301 (305)
||+++| ++|.++++++++|+.+.. ++.++|||..-
T Consensus 330 ---kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l 365 (444)
T PLN00112 330 ---WGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYT 365 (444)
T ss_pred ---cCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEe
Confidence 577777 999999999999995432 56799998653
No 18
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=7.1e-52 Score=396.20 Aligned_cols=246 Identities=23% Similarity=0.265 Sum_probs=212.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCC--Cchhhhhhhccc-C-CceEEEEecCCCHHHH
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMD-T-NAVVRGFLGQQQLEDA 111 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~--D~~~--~~g~~~DL~~~~-~-~~~v~~~~~t~d~~~a 111 (305)
..++.||+||||+|+||+++|+.|+.+++++ +|+|+ |+++ ++|+++||+|+. . ...+... ++++ ++
T Consensus 41 ~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~y-~~ 117 (387)
T TIGR01757 41 WKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDPY-EV 117 (387)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCCH-HH
Confidence 3446799999999999999999999999988 57777 6655 799999999986 2 2234322 3454 89
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG 190 (305)
++|||+||++||.|+++|++|+|++..|+++++++++.|++++ |++++|++|||+|+||+++ ++.+++||+|+||
T Consensus 118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG 193 (387)
T TIGR01757 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFH 193 (387)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEE
Confidence 9999999999999999999999999999999999999999987 9999999999999999875 6778999999999
Q ss_pred e-eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhc
Q 021932 191 V-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVE 261 (305)
Q Consensus 191 ~-t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~ 261 (305)
+ |.|||+|||++||++|++++++|+ +|||||||+ ++||+||++++.+ + +++.+ +++|.++++++|++|++
T Consensus 194 ~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~ 272 (387)
T TIGR01757 194 ALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK 272 (387)
T ss_pred ecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh
Confidence 9 899999999999999999999995 999999999 9999999999865 2 22323 67999999999999999
Q ss_pred cccCCCCchh-HHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 262 AKTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 262 ~k~gkg~t~~-s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
. ||+++| ++|.++++++++|+.+.. ++.++|||.+
T Consensus 273 ~---KG~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~ 308 (387)
T TIGR01757 273 K---WGRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVY 308 (387)
T ss_pred c---cCchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEE
Confidence 4 566777 999999999999995543 4568888764
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.4e-51 Score=388.02 Aligned_cols=244 Identities=23% Similarity=0.328 Sum_probs=214.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC--CceEEEEecCCCHHHHhC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~ 113 (305)
+|+||+||||+|+||+++|+.|+..++++ ||+|+|+++ ++|+++||+|+.. ...++.. +.+ +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 36799999988999999999999999999 999999954 6899999999862 1234432 345 48999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV 191 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~ 191 (305)
|||+||+|||.|+++|++|+|++..|++++++++++|++++ |++++|++|||+|+|||++ ++.+ ++|++||+|+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~ 153 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM 153 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence 99999999999999999999999999999999999999999 5999999999999999875 5677 5999999999
Q ss_pred eehhhHHHHHHHHHHhCCCCcceeE-EEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhccc
Q 021932 192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK 263 (305)
Q Consensus 192 t~Lds~R~~~~la~~l~v~~~~V~~-~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k 263 (305)
|.||++||++++|+++|+++++|++ +||||||+ +++|+||++++.+ + +++.+ +++|.++++++|++|++.
T Consensus 154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~- 231 (322)
T cd01338 154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA- 231 (322)
T ss_pred hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC-
Confidence 9999999999999999999999997 56999998 9999999998864 1 34443 579999999999999995
Q ss_pred cCCCCchhHHH-HHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 264 TGAGSATLSMA-YAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 264 ~gkg~t~~s~A-~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
||+++|++| .++++++++|++|++ ++.++|||.+
T Consensus 232 --kG~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~ 266 (322)
T cd01338 232 --RGASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVP 266 (322)
T ss_pred --cCCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEE
Confidence 589999999 599999999999985 3468888653
No 20
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=3.4e-51 Score=383.54 Aligned_cols=240 Identities=28% Similarity=0.406 Sum_probs=213.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+||+|||+ |.||+++++.|+..++..+|+|+|+++ +++.++||.|... ....... ..++ +++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence 38999998 999999999999999888999999987 6889999999753 1223332 2455 6799999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT 201 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~ 201 (305)
|.|+++||+|.|++.+|++++++++++|++++|+++++++|||+|+||+++ ++.+++|++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765 66789999999999 7899999999
Q ss_pred HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C---------CChhHHHHHHHHHHhchhhhhccccCCCCchh
Q 021932 202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S---------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL 271 (305)
Q Consensus 202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~---------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~ 271 (305)
+||+++++++++|+++||||||+ +++|+||++++.+ + +.+++++++.++++++|++|++. ||+|+|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHH
Confidence 99999999999999999999999 9999999999864 1 23456889999999999999994 589999
Q ss_pred HHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932 272 SMAYAAAKFADACLRGLRGDAGVIECAYVA 301 (305)
Q Consensus 272 s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~ 301 (305)
++|.++++++++|++|. +.++|||..-
T Consensus 229 ~~a~a~~~~~~ail~~~---~~v~~~s~~~ 255 (306)
T cd05291 229 GIATALARIVKAILNDE---NAILPVSAYL 255 (306)
T ss_pred HHHHHHHHHHHHHHcCC---CEEEEEEEEe
Confidence 99999999999999984 5789987643
No 21
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=6.8e-51 Score=380.52 Aligned_cols=239 Identities=30% Similarity=0.451 Sum_probs=214.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
|+|||+ |.||+++|+.|+..++++||+|+|+++ +.|+++||.|.... ...+... ++|+ ++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence 689998 999999999999999999999999987 78999999998643 2233332 3465 7999999999999999
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHH
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVA 204 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la 204 (305)
+++||+|.|++.+|++++++++++|++++|+++++++|||+|+||+++ ++.+|+|++||||+ |.|||+|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765 67789999999999 6899999999999
Q ss_pred HHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----C--ChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHH
Q 021932 205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA 277 (305)
Q Consensus 205 ~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~ 277 (305)
+++++++++|+++|+||||+ +++|+||++++++ + + ++++++++.++++++|++|++. ||+++||+|.++
T Consensus 154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence 99999999999999999999 9999999999864 2 1 2345789999999999999994 589999999999
Q ss_pred HHHHHHHHccCCCCCceeEEEEEe
Q 021932 278 AKFADACLRGLRGDAGVIECAYVA 301 (305)
Q Consensus 278 ~~~~~ai~~~~~~~~~i~~~a~v~ 301 (305)
++++++|++|+ +.++||+.+-
T Consensus 230 ~~~~~ai~~~~---~~v~~~s~~~ 250 (300)
T cd00300 230 ADIVKSILLDE---RRVLPVSAVQ 250 (300)
T ss_pred HHHHHHHHcCC---CeEEEEEEEe
Confidence 99999999985 5799998654
No 22
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=1.3e-50 Score=379.35 Aligned_cols=239 Identities=32% Similarity=0.544 Sum_probs=214.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
+||+|||+ |.||+.+|+.++..++. +|+|+|+++ ..|.++|+.|... ..+++. ++|+ +++++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence 59999998 99999999999999987 899999977 5778888888642 123432 4677 55999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHH
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA 199 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~ 199 (305)
|+|.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|+||+++ ++.+|+|++||||+| .|||+|+
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence 99999999999999999999999999999999999999999999999998765 677899999999995 8999999
Q ss_pred HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHHH
Q 021932 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274 (305)
Q Consensus 200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A 274 (305)
++++|++|++++++|++|||||||+ +++|+||++++.+ + +++++++++.++++++|++|+++| |||+|.||+|
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a 229 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA 229 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 9999999999999999999999999 9999999999865 2 344558999999999999999986 6899999999
Q ss_pred HHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 275 YAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 275 ~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
+++++++++|++|++ .++|||..
T Consensus 230 ~~~~~i~~ai~~~~~---~v~~~s~~ 252 (305)
T TIGR01763 230 ASVVEMVEAILKDRK---RVLPCAAY 252 (305)
T ss_pred HHHHHHHHHHhCCCC---eEEEEEEE
Confidence 999999999999864 68898754
No 23
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-50 Score=380.01 Aligned_cols=243 Identities=34% Similarity=0.613 Sum_probs=216.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
+.+||+|||| |.||+++|+.++..++. +|+|+|+++ +.++++|+.|... ....+.. .++|+ ++++|||+||+
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV 80 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence 3469999998 99999999999999984 699999988 5788999999742 1223322 34677 78999999999
Q ss_pred cCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-eh
Q 021932 121 PAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-ML 194 (305)
Q Consensus 121 ~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~L 194 (305)
++|.++++|+ +|.+++..|++++++++++|++++|++++|++|||+|++++.+ ++.+++|++||||+| .|
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l 156 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL 156 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence 9999999999 9999999999999999999999999999999999999998764 678899999999996 89
Q ss_pred hhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhcccc
Q 021932 195 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKT 264 (305)
Q Consensus 195 ds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~ 264 (305)
|++|++++||+++++++++|+++|+||||+ ++||+||++++.+ .++++++++|.++++++|++|+++|
T Consensus 157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~- 234 (321)
T PTZ00082 157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL- 234 (321)
T ss_pred cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence 999999999999999999999999999999 9999999999854 1455668999999999999999986
Q ss_pred CCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 265 gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
|||+|+||+|.++++++++|++|. +.++|||..
T Consensus 235 gkg~t~~~ia~a~~~i~~ail~d~---~~v~~vs~~ 267 (321)
T PTZ00082 235 GTGSAYFAPAAAAIEMAEAYLKDK---KRVLPCSAY 267 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 789999999999999999999985 489999843
No 24
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-50 Score=378.76 Aligned_cols=242 Identities=32% Similarity=0.535 Sum_probs=215.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCc--eEEEEecCCCHHHHhCCCCEEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA--VVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~--~v~~~~~t~d~~~al~~aDiVIi 120 (305)
+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +.|+++|+.|..... ..+. ..++|+ ++++|||+||+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEEE
Confidence 3459999998 9999999999999997 5899999987 678999999985321 2232 234577 58999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHH
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA 199 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~ 199 (305)
++|.++++|++|.|++..|.+++++++++|+++||+++++++|||+|++|+++ ++.+++|++||||+| .||++|+
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~ 155 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF 155 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998754 667899999999996 8999999
Q ss_pred HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269 (305)
Q Consensus 200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t 269 (305)
+++||++++++|++|+++|+||||+ +++|+||++++++ .+++++++++.++++++|++|++++ |||+|
T Consensus 156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t 233 (319)
T PTZ00117 156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA 233 (319)
T ss_pred HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence 9999999999999999999999999 9999999998854 1455668899999999999999976 78999
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932 270 TLSMAYAAAKFADACLRGLRGDAGVIECAY 299 (305)
Q Consensus 270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~ 299 (305)
+||+|+++++++++|++|. +.++|||.
T Consensus 234 ~~~~a~a~~~~~~ail~~~---~~v~~~s~ 260 (319)
T PTZ00117 234 FFAPAAAIVAMIEAYLKDE---KRVLVCSV 260 (319)
T ss_pred HHHHHHHHHHHHHHHhcCC---CeEEEEEE
Confidence 9999999999999999985 57999984
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=3.5e-50 Score=378.79 Aligned_cols=244 Identities=25% Similarity=0.353 Sum_probs=210.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV 118 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV 118 (305)
||+||||+|+||+++++.|...++++ ||+|+|+++ ++|+++||.|+.... ...+..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCCCCEE
Confidence 69999999999999999999988875 799999954 679999999986211 11112233445899999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhh
Q 021932 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV 196 (305)
Q Consensus 119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds 196 (305)
|++||.|+++|++|.+++..|++++++++++|++++ |+++++++|||+|+|||++ ++.++++|+++||+ |.|||
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 9999999999999999875 66777888889999 89999
Q ss_pred HHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCC-C----C----CChhH--HHHHHHHHHhchhhhhcccc
Q 021932 197 VRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS-C----S----LTPTE--IDYLTDRIQNGGTEVVEAKT 264 (305)
Q Consensus 197 ~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~-~----~----~~~~~--~~~i~~~v~~~g~~i~~~k~ 264 (305)
+|||++||++++++|++|+ +|||||||+ ++||+||++++. + + +++++ +++|.++++++|++|++.|
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999996 699999999 999999999997 5 2 22222 5789999999999999975
Q ss_pred CCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 265 gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
+|++.|++|.++++++++|+.+.. ++.++|||..
T Consensus 234 -~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~ 267 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVY 267 (324)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEee
Confidence 468999999999999999995432 4579999865
No 26
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3e-49 Score=370.70 Aligned_cols=239 Identities=29% Similarity=0.470 Sum_probs=214.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
|||+|||+ |.||+++|+.|+..++..+|+|+|+++ +.++++|+.|.... ...... ++|+ +++++||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence 59999999 999999999999999888999999987 67899999998531 223333 3466 78999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHH
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF 202 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~ 202 (305)
.++++|++|.+++..|+++++++++.|++++|+++++++|||+|+||+++ ++.+|||++||||+ |.|||+|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 66779999999999 79999999999
Q ss_pred HHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC------------CCChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932 203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270 (305)
Q Consensus 203 la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~ 270 (305)
||+++++++++|++|||||||+ +++|+||++++++ .++++++++|.++++++|++|++. ||+|+
T Consensus 153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---kg~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIER---KGATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHc---CCccH
Confidence 9999999999999999999999 9999999998854 123355889999999999999995 58999
Q ss_pred hHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 271 LSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
|++|+++++++++|++|. +.++||+..
T Consensus 229 ~~~a~a~~~i~~ail~~~---~~v~~~s~~ 255 (308)
T cd05292 229 YAIGLALARIVEAILRDE---NSVLTVSSL 255 (308)
T ss_pred HHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 999999999999999985 579998854
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.9e-49 Score=369.66 Aligned_cols=244 Identities=25% Similarity=0.343 Sum_probs=211.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC--CceEEEEecCCCHHHHhC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~ 113 (305)
+|.||+||||+|+||+++++.|+..++++ ||+|+|+++ +.|+++|+.|+.. ..++.. .++++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 36799999999999999999999988775 999999954 5788999999752 223332 346679999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh-CCCCCCcEEEe
Q 021932 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV-GTYDPKRLLGV 191 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~-s~~p~~kviG~ 191 (305)
|||+||++||.+++++++|.+++..|++++++++++|++++ |+++++++|||+|+|||++ ++. +++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~ 152 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA 152 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence 99999999999999999999999999999999999999997 8999999999999999875 555 5788888 777
Q ss_pred -eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCC----C-C----CChhH--HHHHHHHHHhchhh
Q 021932 192 -TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS----C-S----LTPTE--IDYLTDRIQNGGTE 258 (305)
Q Consensus 192 -t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~----~-~----~~~~~--~~~i~~~v~~~g~~ 258 (305)
|.||++||++++|++|++++++|+ .+||||||+ +++|+||++++. + + +++++ +++|.++++++|++
T Consensus 153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~ 231 (325)
T cd01336 153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA 231 (325)
T ss_pred eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence 899999999999999999999997 569999999 999999999986 4 2 23332 58999999999999
Q ss_pred hhccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 259 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 259 i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
|+++| ||+|+||+|.++++++++|++|.. ++.++|||..
T Consensus 232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~ 270 (325)
T cd01336 232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVY 270 (325)
T ss_pred HHHcc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEe
Confidence 99964 589999999999999999999852 3568888653
No 28
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=8.6e-48 Score=360.88 Aligned_cols=241 Identities=27% Similarity=0.434 Sum_probs=212.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~----~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
|||+|+||+|.+|+++++.|+..|+..||+|+|+++ +++.++|+.|.... ...+.. .++|+ +++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~-~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDL-SDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCCH-HHhCCCCEEEE
Confidence 699999988999999999999999988999999954 58889999987421 122322 23465 67999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA 199 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~ 199 (305)
++|.|+++|++|.+++..|+++++++++.|.+++|++++++++||+|++|+++ ++.+++|++||||+ |.|||+|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999765 67789999999999 68999999
Q ss_pred HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----C--ChhHHHHHHHHHHhchhhhhccccCCCCchhH
Q 021932 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 272 (305)
Q Consensus 200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s 272 (305)
+++||++|++++++|+++|+||||+ +++|+||++++.+ + + .+.+++++.++++++|++|++.| |+++||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence 9999999999999999999999999 9999999999865 1 2 24457899999999999999964 778999
Q ss_pred HHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 273 MAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 273 ~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
+|.++++++++|+.|++ .+++|+..
T Consensus 231 ~a~~~~~ii~ail~~~~---~v~~vsv~ 255 (309)
T cd05294 231 PASAISNLVRTIANDER---RILTVSTY 255 (309)
T ss_pred HHHHHHHHHHHHHCCCC---eEEEEEEE
Confidence 99999999999998864 68887653
No 29
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.4e-47 Score=358.18 Aligned_cols=238 Identities=36% Similarity=0.613 Sum_probs=212.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
|+|||| |.||+++|+.++..++. ||+|+|+++ +++.++|+.|... ....+.. .++|+ ++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence 689999 99999999999999988 999999988 5778888888642 1222322 24565 789999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHHHHHH
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFV 203 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~~~~l 203 (305)
|+++|++|.+++.+|++++++++++|++++|+++++++|||+|++|+++ ++.+++||+||||+| .||++|++++|
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765 567899999999996 89999999999
Q ss_pred HHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHH
Q 021932 204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278 (305)
Q Consensus 204 a~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~ 278 (305)
|++|++++++|+++|+||||+ +++|+||++++++ + +++++++++.++++++|++|++.| |||+|+|++|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 999999999999999999999 9999999999864 2 445568999999999999999987 77999999999999
Q ss_pred HHHHHHHccCCCCCceeEEEE
Q 021932 279 KFADACLRGLRGDAGVIECAY 299 (305)
Q Consensus 279 ~~~~ai~~~~~~~~~i~~~a~ 299 (305)
+++++|++|+ +.++||+.
T Consensus 231 ~i~~ail~~~---~~i~~~s~ 248 (300)
T cd01339 231 EMVEAILKDK---KRVLPCSA 248 (300)
T ss_pred HHHHHHHcCC---CcEEEEEE
Confidence 9999999985 48999984
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=5.3e-47 Score=354.92 Aligned_cols=241 Identities=35% Similarity=0.600 Sum_probs=213.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
++||+|||| |+||+++|+.++..++. ||+|+|+++ +++.++|+.|.... ...+. ..++|+ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TGTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-EeCCCH-HHHCCCCEEEEC
Confidence 469999999 99999999999999988 999999987 67888898886421 12222 224577 789999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHHH
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRAN 200 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~~ 200 (305)
+|.|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++|+++ ++.+++|++||||+| .|||+||+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999865 567899999999995 89999999
Q ss_pred HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHHHH
Q 021932 201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275 (305)
Q Consensus 201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~ 275 (305)
++||++++++|++|+++|+||||+ +++|+||++++.+ + ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 999999999999999999999999 9999999998854 2 445557899999999999999974 57899999999
Q ss_pred HHHHHHHHHHccCCCCCceeEEEE
Q 021932 276 AAAKFADACLRGLRGDAGVIECAY 299 (305)
Q Consensus 276 a~~~~~~ai~~~~~~~~~i~~~a~ 299 (305)
++++++++|+.|. +.+++|+.
T Consensus 232 ~~~~ii~ail~~~---~~~~~~~v 252 (307)
T PRK06223 232 SIAEMVEAILKDK---KRVLPCSA 252 (307)
T ss_pred HHHHHHHHHHcCC---CcEEEEEE
Confidence 9999999999875 47888874
No 31
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.4e-47 Score=371.50 Aligned_cols=240 Identities=15% Similarity=0.141 Sum_probs=206.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC--C--CchhhhhhhcccC-C-ceEEEEecCCCHHHHhCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTG 114 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~-----~el~L~D~~--~--~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~~ 114 (305)
+.+|+|+||+|++|+++.+.++....+ -.|+|+|+. + ++|++|||+|+.. . ..+... +++ +++++|
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea~~d 199 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVAFKD 199 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHHhCC
Confidence 459999999999999999999986432 379999994 3 7999999999862 1 234433 234 599999
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC--CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932 115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV 191 (305)
Q Consensus 115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p--~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~ 191 (305)
||+||+++|.|+++||+|.|++..|++|+++++++|.+++| +++++++|||+|++|+++ ++.+ ++|++||||+
T Consensus 200 aDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rVig~ 275 (452)
T cd05295 200 AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNIIAV 275 (452)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence 99999999999999999999999999999999999999999 899999999999999876 4455 9999999999
Q ss_pred eehhhHHHHHHHHHHhCCCCcce-eEEEEcccCCcceeeccccCCCCC-------------C----CChhH--HHHHHHH
Q 021932 192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-------------S----LTPTE--IDYLTDR 251 (305)
Q Consensus 192 t~Lds~R~~~~la~~l~v~~~~V-~~~vlG~hg~~t~vp~~S~~~v~~-------------~----~~~~~--~~~i~~~ 251 (305)
+.||++|++++||+++|+++++| +++||||||+ ++||+||++++.+ + +++++ .+++.+.
T Consensus 276 gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~ 354 (452)
T cd05295 276 ARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVAT 354 (452)
T ss_pred cchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHH
Confidence 88999999999999999999999 5799999999 9999999999853 1 23334 3678889
Q ss_pred HHhchhhhhccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300 (305)
Q Consensus 252 v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v 300 (305)
++++++ + +||+|.||+|.|+++++++|++|++ ++.+++||..
T Consensus 355 v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~ 396 (452)
T cd05295 355 LKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVI 396 (452)
T ss_pred HHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEe
Confidence 999988 3 4689999999999999999999975 4568998754
No 32
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=7.1e-47 Score=353.54 Aligned_cols=216 Identities=24% Similarity=0.360 Sum_probs=189.4
Q ss_pred EEEEEeCCC----CchhhhhhhcccC-C-ceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 021932 74 VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC 147 (305)
Q Consensus 74 el~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~ 147 (305)
.|+|+|+++ ++|+++||.|+.. . ..++. +++.+++++|||+||++||.|+++|++|.|++..|++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999976 6899999999862 2 23332 2453589999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHHHHhCCCCcce-eEEEEcccCC
Q 021932 148 EGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAG 224 (305)
Q Consensus 148 ~~I~~~-~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~~~~V-~~~vlG~hg~ 224 (305)
++|+++ +|+++++++|||+|+|||++ ++.+++|++|+||+ |.|||+||+++||+++++++++| ++|||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999999875 66789999999999 89999999999999999999999 6999999999
Q ss_pred cceeeccccCCC----CC-C----CChhH--HHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHHccCCCCCc
Q 021932 225 VTILPLLSQVKP----SC-S----LTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAG 293 (305)
Q Consensus 225 ~t~vp~~S~~~v----~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~ 293 (305)
++||+||++++ ++ + +++++ +++|.++++++|++|+++| ||+|+||+|.++++++++|++++ .++.
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~-~~~~ 243 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGT-PEGT 243 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCC-cCCe
Confidence 99999999999 54 2 23334 5789999999999999964 68999999999999999999964 2467
Q ss_pred eeEEEEE
Q 021932 294 VIECAYV 300 (305)
Q Consensus 294 i~~~a~v 300 (305)
++|||..
T Consensus 244 v~~vsv~ 250 (309)
T PLN00135 244 WVSMGVY 250 (309)
T ss_pred EEEEEEE
Confidence 8888754
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=1.6e-45 Score=345.09 Aligned_cols=221 Identities=23% Similarity=0.298 Sum_probs=189.5
Q ss_pred hCCCCcEEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHH
Q 021932 68 INPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIV 143 (305)
Q Consensus 68 ~~~~~~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~ 143 (305)
.+++ .|+|+|+++ ++|+++||.|+. .+.......++|++++++|||+||++||.|+++|++|+|++..|++++
T Consensus 13 ~~~~--~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~ 89 (313)
T TIGR01756 13 NRPV--CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIF 89 (313)
T ss_pred CCeE--EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 3445 899999976 689999999997 332211112357778999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHHHHhCCCCcceeE-EEEc
Q 021932 144 KTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV-PVVG 220 (305)
Q Consensus 144 ~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~~~~V~~-~vlG 220 (305)
++++++|++++| ++++|++|||+|+|||++. ++.+|+|++ +||+ |.|||+||+++||++++++|++|+. +|||
T Consensus 90 ~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~G 165 (313)
T TIGR01756 90 KATGEALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWG 165 (313)
T ss_pred HHHHHHHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEE
Confidence 999999999995 5889999999999998752 578999999 9999 8999999999999999999999965 5999
Q ss_pred ccCCcceeeccccCCC--CC-C------CChh-HHHHHHHHHHhchhhhhccccCCCCchhHHH-HHHHHHHHHHHccCC
Q 021932 221 GHAGVTILPLLSQVKP--SC-S------LTPT-EIDYLTDRIQNGGTEVVEAKTGAGSATLSMA-YAAAKFADACLRGLR 289 (305)
Q Consensus 221 ~hg~~t~vp~~S~~~v--~~-~------~~~~-~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A-~a~~~~~~ai~~~~~ 289 (305)
|||+ +++|+||++++ .+ + ++++ .++++.++++++|++|++. ||+|+|++| .++++++++|++|.+
T Consensus 166 eHG~-s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~ail~~~~ 241 (313)
T TIGR01756 166 NHAE-SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMKAWLFGTR 241 (313)
T ss_pred CCCC-ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHHHHhcCCC
Confidence 9999 99999999999 54 1 2331 3679999999999999995 589999988 699999999999754
Q ss_pred CCCceeEEEEE
Q 021932 290 GDAGVIECAYV 300 (305)
Q Consensus 290 ~~~~i~~~a~v 300 (305)
++.++|||.+
T Consensus 242 -~~~i~pvsv~ 251 (313)
T TIGR01756 242 -PGEVLSMGIP 251 (313)
T ss_pred -CCeEEEEEEE
Confidence 5579999874
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.5e-41 Score=311.80 Aligned_cols=205 Identities=32% Similarity=0.485 Sum_probs=183.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCC--CchhhhhhhcccCCc-eEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~--~~~el~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
|+||||+|.+|+++++.|+..+ ...||+|+|+++ +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence 6899998999999999999999 778999999987 788999999986332 23332 35677799999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHH
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV 203 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~l 203 (305)
.++++|++|.+++.+|++++++++++|+++||++|++++|||+|++|+++ ++.+|+|++||||+|.||++|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765 66779999999999669999999999
Q ss_pred HHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHH
Q 021932 204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283 (305)
Q Consensus 204 a~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~a 283 (305)
|+++++++++|+++|||+||+ +++|+||+++ +|.++++++++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a 197 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS 197 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence 999999999999999999999 8999999754 78999999999
Q ss_pred HHccCCCCCceeEEEE
Q 021932 284 CLRGLRGDAGVIECAY 299 (305)
Q Consensus 284 i~~~~~~~~~i~~~a~ 299 (305)
|++|. +.+++|+.
T Consensus 198 i~~~~---~~~~~v~v 210 (263)
T cd00650 198 LLNDE---GEILPVGV 210 (263)
T ss_pred HHcCC---CEEEEEEE
Confidence 99984 46777754
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.1e-38 Score=277.66 Aligned_cols=249 Identities=26% Similarity=0.365 Sum_probs=218.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~-----~~~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a 115 (305)
++.+|.|.||+|++|+++.+.++... -...++|+|+.+ ++|..|+|+|+. ++.++.+..++|..++|+|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhccC
Confidence 45699999999999999999998642 124899999976 689999999997 67777655567888999999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 194 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~L 194 (305)
|+.|+..++||++||+|.|++..|.+|++..+..+++|+ |+..++++.||+|..+.++. +.+..+|.+++-.+|.|
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL 158 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL 158 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence 999999999999999999999999999999999999999 89999999999999987765 45678999999999999
Q ss_pred hhHHHHHHHHHHhCCCCcce-eEEEEcccCCcceeeccccCCCCC---------CCChhHH--HHHHHHHHhchhhhhcc
Q 021932 195 DVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC---------SLTPTEI--DYLTDRIQNGGTEVVEA 262 (305)
Q Consensus 195 ds~R~~~~la~~l~v~~~~V-~~~vlG~hg~~t~vp~~S~~~v~~---------~~~~~~~--~~i~~~v~~~g~~i~~~ 262 (305)
|++|+..+||.++||+.++| ++.+||+|+. ||+|+.-+++++. .+.++.| .++.+.|+++|..+++.
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 99999999999999999999 5999999998 9999999999852 1456666 58999999999999996
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEee
Q 021932 263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302 (305)
Q Consensus 263 k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s 302 (305)
+ |-++.+|.|.+++++++.|+.+.+ +...++- -|.|
T Consensus 238 r--k~SSA~SaA~aacDhi~dw~~gTp-eG~fvSm-gV~s 273 (332)
T KOG1496|consen 238 R--KLSSAMSAAKAACDHIRDWWFGTP-EGTFVSM-GVYS 273 (332)
T ss_pred h--hhhhhhhHHHhHhhhhhheecCCC-CccEEEE-eeec
Confidence 5 789999999999999999999987 3334433 4454
No 36
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=2e-34 Score=241.41 Aligned_cols=139 Identities=40% Similarity=0.631 Sum_probs=123.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
|||+||||+|.||+++++.|+++++++||+|+|+++ ++|+++||+|..............+ +++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence 699999999999999999999999999999999986 7999999999875432332222345 4899999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG 190 (305)
++++|++|.+++..|++++++++++|++++|+++++++|||+|+||+++ ++.+++||+|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~----~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA----QKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH----HHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH----HHhhCcCcccCcC
Confidence 9999999999999999999999999999999999999999999998764 7788999999998
No 37
>PRK15076 alpha-galactosidase; Provisional
Probab=99.93 E-value=2.8e-25 Score=216.92 Aligned_cols=164 Identities=21% Similarity=0.287 Sum_probs=130.4
Q ss_pred CEEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEeCCC--Cc-hhhhhhhccc--CCceEEEEecCCCHHHHhCCCCE
Q 021932 47 FKVAVLGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TNAVVRGFLGQQQLEDALTGMDI 117 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~--~L~-~~~~~-~el~L~D~~~--~~-g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aDi 117 (305)
+||+|||| |.+|.+.++ .++ ..++. .||+|+|+++ ++ +.++ +.+.. .....+.. .++|++++++|||+
T Consensus 2 ~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dADf 78 (431)
T PRK15076 2 PKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGADY 78 (431)
T ss_pred cEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCCE
Confidence 69999999 999998877 555 34554 4999999987 33 3333 44432 12233332 35688899999999
Q ss_pred EEEcCCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 021932 118 VIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA 174 (305)
Q Consensus 118 VIi~ag~~-~~~g--------------~~r~d~--------~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~ 174 (305)
||++++.+ .+++ ++|.|. +.+|++++++++++|+++||+||+|++|||+|++|+.+
T Consensus 79 Vv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~- 157 (431)
T PRK15076 79 VINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM- 157 (431)
T ss_pred EeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-
Confidence 99999986 4445 556677 89999999999999999999999999999999998654
Q ss_pred HHHHHhCCCCCCcEEEee--ehhhHHHHHHHHHHhCCCCcceeEEEEc-ccC
Q 021932 175 EVFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVG-GHA 223 (305)
Q Consensus 175 ~~~~~~s~~p~~kviG~t--~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg 223 (305)
+ ++|+.||||+| .+|+. +.+|+.+|+++++|++++.| +|-
T Consensus 158 ---~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~ 200 (431)
T PRK15076 158 ---N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM 200 (431)
T ss_pred ---h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence 3 68889999997 47875 78999999999999999999 553
No 38
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.93 E-value=7.2e-25 Score=213.49 Aligned_cols=177 Identities=23% Similarity=0.257 Sum_probs=133.5
Q ss_pred CEEEEEcCCCch-HHHHHHHHHhCC--C-CcEEEEEeCCC--C---chhhhhhhcccCCceEEEEecCCCHHHHhCCCCE
Q 021932 47 FKVAVLGAAGGI-GQPLAMLMKINP--L-VSVLHLYDVVN--T---PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDI 117 (305)
Q Consensus 47 ~KI~IIGaaG~V-Gs~la~~L~~~~--~-~~el~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDi 117 (305)
+||+|||| |+. .-.+...|+... + .+||+|+|+++ + ...+..+.+.. ...++.. .|+|+++|++|||+
T Consensus 1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~-~ttD~~~Al~gADf 77 (425)
T cd05197 1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFE-KTMDLEDAIIDADF 77 (425)
T ss_pred CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCCE
Confidence 59999999 654 112333444433 3 58999999987 2 12223333322 3345543 36799999999999
Q ss_pred EEEcCCCC------------CCCCCc--------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHH
Q 021932 118 VIIPAGVP------------RKPGMT--------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 177 (305)
Q Consensus 118 VIi~ag~~------------~~~g~~--------r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~ 177 (305)
||.+..+. .+.|.. ..-...+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~---- 153 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV---- 153 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence 99986432 233211 233456899999999999999999999999999999998765
Q ss_pred HHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-ccCCcceeeccccCCCCC
Q 021932 178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAGVTILPLLSQVKPSC 238 (305)
Q Consensus 178 ~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg~~t~vp~~S~~~v~~ 238 (305)
++. +|+.||||+|+. +.|+++.+|+.+|+++++|+++++| ||| |+||++++.+
T Consensus 154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~G 207 (425)
T cd05197 154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYNG 207 (425)
T ss_pred HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEECC
Confidence 454 478999999877 9999999999999999999999999 998 7899988754
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.91 E-value=1.1e-23 Score=204.76 Aligned_cols=167 Identities=20% Similarity=0.283 Sum_probs=128.1
Q ss_pred CEEEEEcCCCchHH-HHHHHHHhC-C-C-CcEEEEEeCC-C--Cc---hhhhhhhcccCCceEEEEecCCCHHHHhCCCC
Q 021932 47 FKVAVLGAAGGIGQ-PLAMLMKIN-P-L-VSVLHLYDVV-N--TP---GVTADISHMDTNAVVRGFLGQQQLEDALTGMD 116 (305)
Q Consensus 47 ~KI~IIGaaG~VGs-~la~~L~~~-~-~-~~el~L~D~~-~--~~---g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aD 116 (305)
+||+|||| |++-. .+...|+.. . + .+||+|+|++ + +. ..+..+.... ...++.. .++|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence 59999999 76532 233444442 2 3 5899999999 5 21 1122222221 3345543 3679999999999
Q ss_pred EEEEcCCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 021932 117 IVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176 (305)
Q Consensus 117 iVIi~ag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~ 176 (305)
+||+++++++.+++++.+ ...+|++++++++++|+++||+||+|++|||+|++|+.+
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--- 154 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--- 154 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence 999999887766665554 267899999999999999999999999999999998654
Q ss_pred HHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-ccCC
Q 021932 177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG 224 (305)
Q Consensus 177 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg~ 224 (305)
++.+ +.||||+|+.+ .|+++.+|+.+|+++++|+++++| +|-.
T Consensus 155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~ 198 (419)
T cd05296 155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLG 198 (419)
T ss_pred -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccce
Confidence 5544 78999999874 899999999999999999999999 7754
No 40
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.87 E-value=1.2e-21 Score=191.27 Aligned_cols=167 Identities=22% Similarity=0.223 Sum_probs=129.6
Q ss_pred CEEEEEcCCCchHHHHHH--HHHhC-CCC-cEEEEEeCCC--Cchhhhhhhccc--CCceEEEEecCCCHHHHhCCCCEE
Q 021932 47 FKVAVLGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIV 118 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~--~L~~~-~~~-~el~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aDiV 118 (305)
+||+|||| |.+|++.+. .++.. .+. .+|+|+|+++ ++....++.+.. .....+.. .++|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence 48999999 999999876 35433 332 4999999987 344444444432 11223322 256888999999999
Q ss_pred EEcCCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 021932 119 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176 (305)
Q Consensus 119 Ii~ag~~~~~g~~r----------------------~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~ 176 (305)
|++++....++.++ .....+|+++++++++.+.++||++|++++|||++++|+.+
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~--- 155 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL--- 155 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence 99998665555444 34567899999999999999999999999999999998764
Q ss_pred HHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-ccC
Q 021932 177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA 223 (305)
Q Consensus 177 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg 223 (305)
++.++ .|+||+|+- +.|+++.+|+.+++++++|+++++| +|.
T Consensus 156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~ 198 (423)
T cd05297 156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM 198 (423)
T ss_pred -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence 55554 799999865 7889999999999999999999999 553
No 41
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.87 E-value=4.6e-22 Score=172.05 Aligned_cols=104 Identities=35% Similarity=0.538 Sum_probs=94.1
Q ss_pred eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----------CCChhHHHHHHHHHHhchhhhh
Q 021932 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV 260 (305)
Q Consensus 192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~ 260 (305)
|.|||+||+++||+++|++|+++++|||||||+ ++||+||++++.+ .++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 679999999999999999999999999999999 9999999999853 3566778999999999999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932 261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA 301 (305)
Q Consensus 261 ~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~ 301 (305)
+.|. |+++||+|.++++++++|++|+ +.++||+.+.
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ail~~~---~~i~~~sv~~ 115 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEAILKDE---RRILPVSVYL 115 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHHHHTTH---TEEEEEEEEE
T ss_pred eecc--ccCcCCHHHHHHHHHHHHhhcc---cccccceecc
Confidence 9862 8999999999999999999997 4788887653
No 42
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.84 E-value=2.7e-20 Score=181.88 Aligned_cols=166 Identities=20% Similarity=0.283 Sum_probs=121.5
Q ss_pred CEEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEeCCC--C---chhhhhhhcccCCceEEEEecCCCHHHHhCCCCE
Q 021932 47 FKVAVLGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--T---PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDI 117 (305)
Q Consensus 47 ~KI~IIGaaG~V-Gs~la~~L~~~--~~-~~el~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDi 117 (305)
|||+|||| |++ +..+...|++. .+ .+||+|+|+++ + ...+..+.... ...+++. .|+|+++|++|||+
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCCCCE
Confidence 69999999 654 11233444444 23 48999999998 2 12222333222 2345543 36799999999999
Q ss_pred EEEcCCCC------------CCCCC---c-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHH
Q 021932 118 VIIPAGVP------------RKPGM---T-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 177 (305)
Q Consensus 118 VIi~ag~~------------~~~g~---~-----r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~ 177 (305)
||.+..+. .+.|. + -.-...+|++++++++++|+++||+||+|++|||+|++|+.+
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---- 153 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---- 153 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence 99986432 23331 1 223467899999999999999999999999999999998765
Q ss_pred HHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-cc
Q 021932 178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GH 222 (305)
Q Consensus 178 ~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~h 222 (305)
++. +|+.||||+|+-... ++..+|+.||+++++++..+.| +|
T Consensus 154 ~~~--~~~~kviGlC~~~~~-~~~~la~~lg~~~~~v~~~~~GlNH 196 (437)
T cd05298 154 RRL--FPNARILNICDMPIA-IMDSMAAILGLDRKDLEPDYFGLNH 196 (437)
T ss_pred HHH--CCCCCEEEECCcHHH-HHHHHHHHhCCCHHHceEEEEeecc
Confidence 443 788999999976543 6788999999999999999999 44
No 43
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.79 E-value=2.6e-18 Score=149.17 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=102.8
Q ss_pred EEEEEcCCCchHHHHH--HHHHhCC-C-CcEEEEEeCCC--C---chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932 48 KVAVLGAAGGIGQPLA--MLMKINP-L-VSVLHLYDVVN--T---PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV 118 (305)
Q Consensus 48 KI~IIGaaG~VGs~la--~~L~~~~-~-~~el~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV 118 (305)
||+|||| |++-.+.. ..+...+ + .+||+|+|+++ + ...+..+.... ...++.. .++|+++|++|||+|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~-~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVE-ATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEE-EESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEE-EeCCHHHHhCCCCEE
Confidence 8999999 88765543 2333333 3 46999999997 1 12222333222 3344432 357999999999999
Q ss_pred EEcCCC------------CCCCCCc----------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 021932 119 IIPAGV------------PRKPGMT----------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176 (305)
Q Consensus 119 Ii~ag~------------~~~~g~~----------r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~ 176 (305)
|.+..+ |.+.|.. -.....++++.+.++++.|+++|||||++|+|||+.++|..+
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--- 154 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--- 154 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence 998642 4444422 233467899999999999999999999999999999987654
Q ss_pred HHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCC
Q 021932 177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL 209 (305)
Q Consensus 177 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v 209 (305)
.+. +|..|++|+|+-.. -+...+|+.||+
T Consensus 155 -~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~ 183 (183)
T PF02056_consen 155 -SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM 183 (183)
T ss_dssp -HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred -HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence 443 55689999997654 367789998874
No 44
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.76 E-value=6.9e-18 Score=162.66 Aligned_cols=169 Identities=24% Similarity=0.368 Sum_probs=120.5
Q ss_pred CCCEEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCC-Cch----hhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVN-TPG----VTADISHMDTNAVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~--~L~~~~-~-~~el~L~D~~~-~~g----~~~DL~~~~~~~~v~~~~~t~d~~~al~~a 115 (305)
+..||+|||| |+++..-.. .|.+.+ + ..||.|+|+++ ... .+..+.+.. ...++... ++|.++||+||
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA 78 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA 78 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence 3569999999 887665432 333333 2 57999999987 211 122233322 23366543 57899999999
Q ss_pred CEEEEcCCC------------CCCCCCch--------hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 021932 116 DIVIIPAGV------------PRKPGMTR--------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175 (305)
Q Consensus 116 DiVIi~ag~------------~~~~g~~r--------~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~ 175 (305)
|+|+.+..+ |.|.|-.+ .-...++++++.+|++.|+++||+||++++|||+.++|..+
T Consensus 79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv-- 156 (442)
T COG1486 79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV-- 156 (442)
T ss_pred CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH--
Confidence 999998632 33443211 12346899999999999999999999999999999887554
Q ss_pred HHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCC-cceeEEEEc-ccC
Q 021932 176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-GHA 223 (305)
Q Consensus 176 ~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~vlG-~hg 223 (305)
.+. +|.-|++|+|+... -....+|+.|++++ ++++.-+.| +|.
T Consensus 157 --~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~ 201 (442)
T COG1486 157 --RRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHM 201 (442)
T ss_pred --HHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhh
Confidence 443 55449999997543 35788999999976 999999999 553
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=2.2e-08 Score=95.66 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=85.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhhccc-CCceEEEEecCCCHHHHh
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMD-TNAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~~~~-~~~~v~~~~~t~d~~~al 112 (305)
|||+|+|. |+||...+..|++.|+ +|+++|+++. .|. ..+|.... ...+++. |+|+++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~ 74 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV 74 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence 79999998 9999999999999999 9999999871 111 11233221 2335665 57999999
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEe-cCCCCccHHHH
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLI-SNPVNSTVPIA 173 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-aiviv~-tNPvd~lt~~~ 173 (305)
+++|++||+.|+|.++.. ..+...+...++.|.++.+. .++++= |-|+.....+-
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 999999999999987632 22567888999999988876 443333 68888765543
No 46
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.98 E-value=1.7e-09 Score=94.05 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=78.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-c--hhhhh-hh---ccc---------CCceEEEEecCCCHH
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-P--GVTAD-IS---HMD---------TNAVVRGFLGQQQLE 109 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~--g~~~D-L~---~~~---------~~~~v~~~~~t~d~~ 109 (305)
||+|+|+ |.+|..+|..++..|+ +|+|+|.++ + . ....+ +. ... ...+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999999 9999999999999999 999999986 1 1 11111 11 000 1234554 35775
Q ss_pred HHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 021932 110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL 188 (305)
Q Consensus 110 ~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kv 188 (305)
+ +.+||+||.+. .++.++.+++..++++.+ |++++ .||...+-. +++.. ... .|+|+
T Consensus 75 ~-~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i---~~la~-~~~-~p~R~ 132 (180)
T PF02737_consen 75 E-AVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSI---SELAA-ALS-RPERF 132 (180)
T ss_dssp G-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-H---HHHHT-TSS-TGGGE
T ss_pred H-Hhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCH---HHHHh-ccC-cCceE
Confidence 5 55999999985 347899999999999999 68876 788777643 22222 333 46789
Q ss_pred EEeee
Q 021932 189 LGVTM 193 (305)
Q Consensus 189 iG~t~ 193 (305)
+|+..
T Consensus 133 ig~Hf 137 (180)
T PF02737_consen 133 IGMHF 137 (180)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99864
No 47
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.93 E-value=5.1e-09 Score=97.98 Aligned_cols=141 Identities=23% Similarity=0.294 Sum_probs=97.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chh--hhh----hhccc------CCceEEEEecCCCHHH
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD----ISHMD------TNAVVRGFLGQQQLED 110 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~--~~D----L~~~~------~~~~v~~~~~t~d~~~ 110 (305)
.+||+|||| |.+|+.+|+.++..|+ +|+|+|+++ + ++. ... +.... ....+..+..++++ .
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999999 9999999999999778 999999986 1 111 111 11100 01112222234566 5
Q ss_pred HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 021932 111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL 189 (305)
Q Consensus 111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kvi 189 (305)
++++||+||.++ .+|.++.+++..++.+++ |++++ .||.+.+...-++ ..+ -.|+|++
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia----~~~-~rper~i 137 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELA----EAL-KRPERFI 137 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHH----HHh-CCchhEE
Confidence 899999999985 568999999999999999 78877 8999987543322 223 4467899
Q ss_pred Eee-------------------ehhhHHHHHHHHHHhCCCC
Q 021932 190 GVT-------------------MLDVVRANTFVAEVLGLDP 211 (305)
Q Consensus 190 G~t-------------------~Lds~R~~~~la~~l~v~~ 211 (305)
|+. .-++...-..++++++-.|
T Consensus 138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 982 1255555667788887443
No 48
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.84 E-value=1.2e-08 Score=89.25 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=76.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhhccc-CCceEEEEecCCCHHHHh
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMD-TNAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~~~~-~~~~v~~~~~t~d~~~al 112 (305)
|||+|||. |+||..+|..|+..|+ +|+.+|+++. .|. ..++.... ...+++. ++|+++++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai 74 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI 74 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence 79999998 9999999999999999 9999999861 111 11122111 1356665 35788889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHHhCCC
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVGTY 183 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~lt~~~~~~~~~~s~~ 183 (305)
++||++|+|.+.|...+.+ -+...+.+.++.|.++. ++.+|++= |=|+...-.++..++.+.++.
T Consensus 75 ~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~ 141 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGK 141 (185)
T ss_dssp HH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCT
T ss_pred hccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhccc
Confidence 9999999999988765321 13455677777777766 34444433 578887665555666666553
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.83 E-value=4.3e-08 Score=92.76 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=82.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchh-------hhh-hhcc-----cCCceEEEEecCCCHHHHh
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV-------TAD-ISHM-----DTNAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~-------~~D-L~~~-----~~~~~v~~~~~t~d~~~al 112 (305)
+||+|||+ |.+|+.+|..++..|+ +|+++|+++ .... .++ +... ....+++. ++++++++
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av 81 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV 81 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence 58999999 9999999999999999 999999976 1111 011 1101 01123443 35788899
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~ 191 (305)
++||+|+.++ .+|.++.+++...+.+++| ++ |+.||.+.+... ++ ..... .|+|++|+
T Consensus 82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s---~l-a~~~~-~p~R~~g~ 140 (321)
T PRK07066 82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPT---DF-YARAT-HPERCVVG 140 (321)
T ss_pred cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHH---HH-HHhcC-CcccEEEE
Confidence 9999999985 3478889999999999995 55 457888876542 22 22233 34788886
No 50
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.80 E-value=6e-08 Score=90.36 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--h---hh-hhccc---------CCceEEEEecCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T---AD-ISHMD---------TNAVVRGFLGQQ 106 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~---~D-L~~~~---------~~~~v~~~~~t~ 106 (305)
+..||+|||+ |.+|..+|..++..|+ +|+++|+++ . .+. . +| +.+.. ...+++. ++
T Consensus 4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~ 77 (286)
T PRK07819 4 AIQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TT 77 (286)
T ss_pred CccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eC
Confidence 3459999999 9999999999999999 999999986 1 111 1 11 11110 0123443 45
Q ss_pred CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184 (305)
Q Consensus 107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tNPvd~lt~~~~~~~~~~s~~p 184 (305)
|+ +++++||+||.++ .++.++.+++...+++.+ |++++ +||-.......+ .....+
T Consensus 78 ~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~l----a~~~~~- 135 (286)
T PRK07819 78 DL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKL----AAATKR- 135 (286)
T ss_pred CH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcCC-
Confidence 77 7799999999985 347888999999999996 46655 677776544322 223333
Q ss_pred CCcEEEee
Q 021932 185 PKRLLGVT 192 (305)
Q Consensus 185 ~~kviG~t 192 (305)
++|++|+.
T Consensus 136 ~~r~~g~h 143 (286)
T PRK07819 136 PGRVLGLH 143 (286)
T ss_pred CccEEEEe
Confidence 56788874
No 51
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.73 E-value=6.8e-08 Score=100.56 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=84.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chh--hhh----hhccc---------CCceEEEEecCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD----ISHMD---------TNAVVRGFLGQQQ 107 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~--~~D----L~~~~---------~~~~v~~~~~t~d 107 (305)
..||+|||| |.+|..+|+.++..|+ +|+|+|+++ + .+. ..+ +.... ...+++. ++|
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~ 386 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD 386 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence 469999999 9999999999999999 999999986 1 111 111 11100 0134543 457
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (305)
Q Consensus 108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~ 186 (305)
+ +++++||+||.++ .++.++.+++..++++++ |++++ .||.+.+-..-++ . ... .|+
T Consensus 387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la---~-~~~-~p~ 444 (715)
T PRK11730 387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLA---K-ALK-RPE 444 (715)
T ss_pred H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH---h-hcC-CCc
Confidence 7 7799999999985 457899999999999999 56655 8998886542222 2 333 357
Q ss_pred cEEEe
Q 021932 187 RLLGV 191 (305)
Q Consensus 187 kviG~ 191 (305)
|++|+
T Consensus 445 r~~g~ 449 (715)
T PRK11730 445 NFCGM 449 (715)
T ss_pred cEEEE
Confidence 89997
No 52
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.71 E-value=6e-08 Score=101.17 Aligned_cols=119 Identities=20% Similarity=0.246 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--hhhhhcc-----c--------CCceEEEEecCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISHM-----D--------TNAVVRGFLGQQ 106 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~~DL~~~-----~--------~~~~v~~~~~t~ 106 (305)
+..||+|||| |.+|..+|..++..|+ +|+|+|+++ . ++. ..+..+. . ...+++. ++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~ 407 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL 407 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence 4469999999 9999999999999999 999999986 1 211 1111110 0 0124443 45
Q ss_pred CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185 (305)
Q Consensus 107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~ 185 (305)
|+ +++++||+||.++ .+|.++.+++..++++++ |++++ .||...+-..-++ ..+. .|
T Consensus 408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~~~~-~p 465 (737)
T TIGR02441 408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA----AVSS-RP 465 (737)
T ss_pred CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----hhcC-Cc
Confidence 77 6899999999985 458899999999999999 57765 7998886543222 2333 35
Q ss_pred CcEEEe
Q 021932 186 KRLLGV 191 (305)
Q Consensus 186 ~kviG~ 191 (305)
+|++|+
T Consensus 466 ~r~ig~ 471 (737)
T TIGR02441 466 EKVIGM 471 (737)
T ss_pred cceEEE
Confidence 789997
No 53
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=1.9e-07 Score=86.76 Aligned_cols=119 Identities=20% Similarity=0.307 Sum_probs=78.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhh----hhhcc-----cC---------CceEEEEecCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISHM-----DT---------NAVVRGFLGQQ 106 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~----DL~~~-----~~---------~~~v~~~~~t~ 106 (305)
.+||+|||+ |.+|..+|..++..|+ +|+++|+++ ....+. .+.+. .. ..+++. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 359999999 9999999999999998 999999976 111111 11110 00 123443 45
Q ss_pred CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185 (305)
Q Consensus 107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~ 185 (305)
|+++++++||+||++.. ++.+..+++.+++.++++ ++++ ++|....... ++.. .... +
T Consensus 77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~---~~~~-~~~~-~ 135 (287)
T PRK08293 77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPS---QFAE-ATGR-P 135 (287)
T ss_pred CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHH---HHHh-hcCC-c
Confidence 78788999999999862 246778888888888875 5544 5676665432 2222 2233 4
Q ss_pred CcEEEe
Q 021932 186 KRLLGV 191 (305)
Q Consensus 186 ~kviG~ 191 (305)
.|++|+
T Consensus 136 ~r~vg~ 141 (287)
T PRK08293 136 EKFLAL 141 (287)
T ss_pred ccEEEE
Confidence 577776
No 54
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.70 E-value=1.1e-07 Score=99.00 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--hhhhh-----ccc--------CCceEEEEecCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADIS-----HMD--------TNAVVRGFLGQQ 106 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~~DL~-----~~~--------~~~~v~~~~~t~ 106 (305)
+.+||+|||| |.+|..+|..++..|+ +|+|+|+++ . ++. ..++. ... ...+++. ++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~ 385 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL 385 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence 4569999999 9999999999999999 999999986 1 111 11111 100 0123443 45
Q ss_pred CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185 (305)
Q Consensus 107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~ 185 (305)
|+ +++++||+||.++ .++.++.+++..++++.+ |++++ .||.+.+-..-+ ...+. .|
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~i----a~~~~-~p 443 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLL----AKALK-RP 443 (714)
T ss_pred CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcC-Cc
Confidence 77 7799999999985 457899999999999999 67765 899988754322 22333 46
Q ss_pred CcEEEe
Q 021932 186 KRLLGV 191 (305)
Q Consensus 186 ~kviG~ 191 (305)
+|++|+
T Consensus 444 ~r~ig~ 449 (714)
T TIGR02437 444 ENFCGM 449 (714)
T ss_pred ccEEEE
Confidence 789998
No 55
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.66 E-value=1.9e-07 Score=97.19 Aligned_cols=119 Identities=21% Similarity=0.350 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-C--ch--hhhhhhcc-----c--------CCceEEEEecC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADISHM-----D--------TNAVVRGFLGQ 105 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~-~--~g--~~~DL~~~-----~--------~~~~v~~~~~t 105 (305)
+.+||+|||| |.+|..+|..++ ..|+ +|+|+|+++ . .+ ...+..+. . ...+++. +
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 381 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T 381 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence 3469999999 999999999998 7799 999999976 1 11 11111110 0 1134554 4
Q ss_pred CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184 (305)
Q Consensus 106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p 184 (305)
+|+ +++++||+||.++ .+|.++.+++..++++++ |++++ .||...+...-++ . ... .
T Consensus 382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la---~-~~~-~ 439 (708)
T PRK11154 382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIA---A-AAA-R 439 (708)
T ss_pred CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH---H-hcC-c
Confidence 577 7899999999985 458899999999999998 67766 7998886543222 2 233 3
Q ss_pred CCcEEEe
Q 021932 185 PKRLLGV 191 (305)
Q Consensus 185 ~~kviG~ 191 (305)
|+|++|+
T Consensus 440 p~r~ig~ 446 (708)
T PRK11154 440 PEQVIGL 446 (708)
T ss_pred ccceEEE
Confidence 5689988
No 56
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.66 E-value=2e-07 Score=96.82 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-C--chh--hhh-hhcc----c--------CCceEEEEecC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PGV--TAD-ISHM----D--------TNAVVRGFLGQ 105 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~-~--~g~--~~D-L~~~----~--------~~~~v~~~~~t 105 (305)
+.+||+|||| |.+|+.+|..++ ..|+ +|+|+|+++ . .+. ..+ +... . ...+++. +
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 376 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T 376 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence 4469999999 999999999988 4799 999999986 1 111 111 1110 0 0123443 4
Q ss_pred CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184 (305)
Q Consensus 106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p 184 (305)
+|+ +++++||+||.++ .++.++.+++..++++++ |++++ .||...+...-++ ... -.
T Consensus 377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la----~~~-~~ 434 (699)
T TIGR02440 377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA----AAA-SR 434 (699)
T ss_pred CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH----Hhc-CC
Confidence 577 6899999999985 457899999999999999 56655 7998886543222 222 34
Q ss_pred CCcEEEe
Q 021932 185 PKRLLGV 191 (305)
Q Consensus 185 ~~kviG~ 191 (305)
|+|++|+
T Consensus 435 p~r~~g~ 441 (699)
T TIGR02440 435 PENVIGL 441 (699)
T ss_pred cccEEEE
Confidence 5789987
No 57
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.64 E-value=1.9e-08 Score=89.29 Aligned_cols=121 Identities=21% Similarity=0.346 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C-----chhhhhhhccc-----------------CCceEE
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD-----------------TNAVVR 100 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~-----~g~~~DL~~~~-----------------~~~~v~ 100 (305)
.+.+.|+|+|| |++|+.+|+..++.|+ .|.|+|.++ + ++....+.+.. ...+++
T Consensus 9 ~~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 9 AEIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred ccccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 34568999999 9999999999999999 999999987 1 22222222211 012333
Q ss_pred EEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCcc-HHHHHHHHH
Q 021932 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNST-VPIAAEVFK 178 (305)
Q Consensus 101 ~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~l-t~~~~~~~~ 178 (305)
. ++|.++++.|||+||.+ +.+|+++.+++.+.+++.|+ ++++ .||...+. +.++
T Consensus 86 ~---~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl~lt~ia----- 141 (298)
T KOG2304|consen 86 T---STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSLSLTDIA----- 141 (298)
T ss_pred H---cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccceeHHHHH-----
Confidence 2 46888999999999886 46799999999999999995 5544 79998864 3332
Q ss_pred HhCCCCCCcEEEee
Q 021932 179 KVGTYDPKRLLGVT 192 (305)
Q Consensus 179 ~~s~~p~~kviG~t 192 (305)
... -+|.|+.|+.
T Consensus 142 ~~~-~~~srf~GlH 154 (298)
T KOG2304|consen 142 SAT-QRPSRFAGLH 154 (298)
T ss_pred hhc-cChhhhceee
Confidence 222 4567899984
No 58
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.57 E-value=5.4e-07 Score=83.68 Aligned_cols=109 Identities=20% Similarity=0.330 Sum_probs=76.4
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCCCCCC
Q 021932 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVPRKPG 129 (305)
Q Consensus 51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~g 129 (305)
|+||+||+|++++..|+++|...+|+.+|+........++........+++ +....+++++++++|+||.+|+...-.+
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~ 81 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG 81 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence 899999999999999999995569999998662211112222211101121 1123467889999999999987543333
Q ss_pred -CchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 021932 130 -MTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159 (305)
Q Consensus 130 -~~r~d~~~~N~~i~~~i~~~I~~~~p~aiv 159 (305)
..+..+...|+...+.+++...+.+.+.+|
T Consensus 82 ~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV 112 (280)
T PF01073_consen 82 DYPPEEYYKVNVDGTRNVLEAARKAGVKRLV 112 (280)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 456778899999999999999988765544
No 59
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.57 E-value=5e-07 Score=84.06 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=77.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEE----EEecC----CCHHHHhC--CCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR----GFLGQ----QQLEDALT--GMD 116 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~----~~~~t----~d~~~al~--~aD 116 (305)
|.|+||+|++|+.++..|+..+. .+|+++|.++ +.....++.......+++ ...++ ..+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 67999999999999999998865 4999999988 344445553211112222 11111 12456677 999
Q ss_pred EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCCccH
Q 021932 117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTV 170 (305)
Q Consensus 117 iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t----NPvd~lt 170 (305)
+||.+|....-+ .....+.+..|+-..+++++...+++.+.+|.+.| ||.++|-
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH
Confidence 999999753222 12456778999999999999999999888888875 7888774
No 60
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.56 E-value=9.3e-07 Score=87.84 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhhcccCCceEEEEecCCCHHHHh
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDTNAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al 112 (305)
+|||+|||+ |+||..+|..|+..|..-+|+.+|+++. .|. ..+|.......++.. ++++++++
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~~i 76 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEKHV 76 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHHHH
Confidence 479999998 9999999999998864338999999861 111 011111101112443 45777889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHH
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPI 172 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~--tNPvd~lt~~ 172 (305)
++||++|+|.++|.+......+ -.-+...+.+.++.|.++.++..+++. |-|....-.+
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~ 137 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence 9999999999998753210000 022456688888888888754444333 6888765444
No 61
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.56 E-value=8.9e-07 Score=79.18 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc----CCceEEEEecCCCHHHHhCCCCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
|||+|||++|.+|++++..|...|+ +|.++|+++ ......++.+.. ....+.. ++.+++++++|+||+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~----~~~~ea~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG----ADNAEAAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE----eChHHHHhcCCEEEE
Confidence 5899998449999999999999987 999999876 222222222211 0111221 134688999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~ 168 (305)
+.. ...+.++++.+...-.+.+|+-++||.+.
T Consensus 75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 863 12233444445444344678888999875
No 62
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.55 E-value=1.2e-06 Score=81.26 Aligned_cols=117 Identities=21% Similarity=0.382 Sum_probs=78.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chh-----h-hhhhccc---------CCceEEEEecCCCH
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----T-ADISHMD---------TNAVVRGFLGQQQL 108 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~-----~-~DL~~~~---------~~~~v~~~~~t~d~ 108 (305)
+||+|||+ |.+|..++..++..|+ +|+++|+++. .+. . .++.... ...+++. ++|+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~~ 77 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTDL 77 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence 48999999 9999999999999998 9999999761 111 0 0111110 0123443 3566
Q ss_pred HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 021932 109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187 (305)
Q Consensus 109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~k 187 (305)
+++++||+||+++ .++..+.+++.+.+.++++ ++++ +||-..+-...+ ....+. +.|
T Consensus 78 -~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~r 135 (282)
T PRK05808 78 -DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PDK 135 (282)
T ss_pred -HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Ccc
Confidence 5689999999995 2356777888889999884 6655 677777654332 223333 357
Q ss_pred EEEe
Q 021932 188 LLGV 191 (305)
Q Consensus 188 viG~ 191 (305)
++|+
T Consensus 136 ~ig~ 139 (282)
T PRK05808 136 VIGM 139 (282)
T ss_pred eEEe
Confidence 8886
No 63
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.50 E-value=6.6e-07 Score=89.60 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chh--hh----hhhccc---------CCceEEEEecCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA----DISHMD---------TNAVVRGFLGQQ 106 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~--~~----DL~~~~---------~~~~v~~~~~t~ 106 (305)
+..||+|||+ |.+|+.+|..++..|+ +|+++|+++ + .+. .. .+.... ...+++. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 4468999999 9999999999999999 999999986 1 111 00 111100 0123443 35
Q ss_pred CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (305)
Q Consensus 107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~ 186 (305)
++ +++++||+||.+. .++..+.+.+...+.++++...+ ++||...+-..-++ . ... .+.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i~~iA---~-~~~-~p~ 136 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLSITAIA---A-GLA-RPE 136 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCHHHHH---H-hcC-ccc
Confidence 66 6789999999985 34677888888889999854433 47888776543222 2 222 245
Q ss_pred cEEEeee
Q 021932 187 RLLGVTM 193 (305)
Q Consensus 187 kviG~t~ 193 (305)
|++|+..
T Consensus 137 r~~G~HF 143 (503)
T TIGR02279 137 RVAGLHF 143 (503)
T ss_pred ceEEEec
Confidence 7777643
No 64
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.49 E-value=1.2e-06 Score=81.52 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=75.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhh--------hh---cccC---------CceEEEEecC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD--------IS---HMDT---------NAVVRGFLGQ 105 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~D--------L~---~~~~---------~~~v~~~~~t 105 (305)
.||+|||+ |.+|..+|..++..|+ +|+++|+++ ....+.+ +. +... ..++.. +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence 58999999 9999999999999998 999999986 1111111 11 1000 112332 3
Q ss_pred CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYD 184 (305)
Q Consensus 106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p 184 (305)
+++ +++++||+||++.. ++.++.+++.+++.++++ ++++ +||...+...-+ ..... .
T Consensus 78 ~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l----a~~~~-~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI----ATALE-R 135 (291)
T ss_pred CCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH----HhhcC-C
Confidence 466 67899999999862 245667788888888874 5655 466555443222 22222 3
Q ss_pred CCcEEEee
Q 021932 185 PKRLLGVT 192 (305)
Q Consensus 185 ~~kviG~t 192 (305)
+.|++|+.
T Consensus 136 ~~r~ig~h 143 (291)
T PRK06035 136 KDRFIGMH 143 (291)
T ss_pred cccEEEEe
Confidence 56788873
No 65
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.47 E-value=1.5e-06 Score=87.25 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---ch--hhhhh----hccc---------CCceEEEEecCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADI----SHMD---------TNAVVRGFLGQQQ 107 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g--~~~DL----~~~~---------~~~~v~~~~~t~d 107 (305)
..||+|||+ |.+|..+|..++..|+ +|+++|+++. .+ ...++ .... ...++.. +++
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~ 80 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA 80 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 458999999 9999999999999999 9999999861 11 11111 1100 0123443 346
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (305)
Q Consensus 108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~ 186 (305)
+ +++++||+||.+. .++.++.+.+...+++.+ |++++ +||-..+-..-+ ..... .++
T Consensus 81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~l----a~~~~-~p~ 138 (507)
T PRK08268 81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAI----AAALK-HPE 138 (507)
T ss_pred H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcC-Ccc
Confidence 6 5689999999985 346777888888899988 56655 466655433211 22333 357
Q ss_pred cEEEeeehh
Q 021932 187 RLLGVTMLD 195 (305)
Q Consensus 187 kviG~t~Ld 195 (305)
|++|+..++
T Consensus 139 r~~G~hff~ 147 (507)
T PRK08268 139 RVAGLHFFN 147 (507)
T ss_pred cEEEEeecC
Confidence 888874333
No 66
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.46 E-value=5.2e-07 Score=76.64 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=63.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc--------CCceEEEEecCCCHHHHhCCCCEEE
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TNAVVRGFLGQQQLEDALTGMDIVI 119 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~--------~~~~v~~~~~t~d~~~al~~aDiVI 119 (305)
||+|+|| |..|.++|..|..+++ +|.|+++++.....+.-.+.. ....++. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 8999999 9999999999999997 999999975211111111211 0123443 468999999999999
Q ss_pred EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932 120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (305)
Q Consensus 120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t 163 (305)
++.. ....+++++++..+- ++..+++++
T Consensus 75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred eccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 9852 234678888888887 445555443
No 67
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.43 E-value=4.9e-06 Score=82.94 Aligned_cols=208 Identities=19% Similarity=0.236 Sum_probs=131.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC----CCHHHHhCC--CC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ----QQLEDALTG--MD 116 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~--aD 116 (305)
..+.|.|+||+|++|+.+...++..+. .+|+++|.+| ..-...+|.+.....+++.+.++ .-.+.++++ .|
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 345899999999999999988887754 5999999998 33344455543212333333222 235677888 99
Q ss_pred EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932 117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLLG 190 (305)
Q Consensus 117 iVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t----NPvd~lt~~~~~~~~~~s~~p~~kviG 190 (305)
+|+.+|....-|- ..-.+-++.|+-..+++++...+++-+.++++.| ||.|+|-. ++
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGa--TK--------------- 390 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGA--TK--------------- 390 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhH--HH---------------
Confidence 9999998655443 3456778999999999999999999888888876 88887642 21
Q ss_pred eeehhhHHHHHHHHHHhC-------CCCccee-EEEEcccCCcceeeccccCCC-CCC--CChhH-------HHHHHHHH
Q 021932 191 VTMLDVVRANTFVAEVLG-------LDPREVD-VPVVGGHAGVTILPLLSQVKP-SCS--LTPTE-------IDYLTDRI 252 (305)
Q Consensus 191 ~t~Lds~R~~~~la~~l~-------v~~~~V~-~~vlG~hg~~t~vp~~S~~~v-~~~--~~~~~-------~~~i~~~v 252 (305)
|+...+...++ -.-.-|+ +-|+|..| +.+|+|.+--- +++ +++-+ ..|-.+-|
T Consensus 391 -------r~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LV 461 (588)
T COG1086 391 -------RLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLV 461 (588)
T ss_pred -------HHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHH
Confidence 12122222221 1122343 67999988 58999874322 222 23322 12333333
Q ss_pred Hhc-----hhhhhccccCCCCchhHHHHHHHHHHHHHHc
Q 021932 253 QNG-----GTEVVEAKTGAGSATLSMAYAAAKFADACLR 286 (305)
Q Consensus 253 ~~~-----g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~ 286 (305)
-++ |.+|+-++ +|+..-+.++.++++.
T Consensus 462 lqA~a~~~gGeifvld-------MGepvkI~dLAk~mi~ 493 (588)
T COG1086 462 LQAGAIAKGGEIFVLD-------MGEPVKIIDLAKAMIE 493 (588)
T ss_pred HHHHhhcCCCcEEEEc-------CCCCeEHHHHHHHHHH
Confidence 333 33444333 3566677888887744
No 68
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.42 E-value=1.5e-06 Score=81.00 Aligned_cols=119 Identities=21% Similarity=0.331 Sum_probs=73.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhh-----hhh----cccC--------CceEEEEecCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-----DIS----HMDT--------NAVVRGFLGQQQ 107 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~-----DL~----~~~~--------~~~v~~~~~t~d 107 (305)
.+||+|||+ |.+|..+|..|+..|+ +|+++|+++. ..... .+. .... ..+++. +++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 358999999 9999999999999998 9999999761 11111 010 0000 122443 346
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (305)
Q Consensus 108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~ 186 (305)
+ +++++||+||++.. ++..+.+.+.+.+.+++ |+++++ ||-..+-.. ++.. ... .+.
T Consensus 78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~s---~la~-~~~-~~~ 135 (292)
T PRK07530 78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAILA--TNTSSISIT---RLAS-ATD-RPE 135 (292)
T ss_pred H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEEE--EcCCCCCHH---HHHh-hcC-Ccc
Confidence 6 67899999999852 12344556667788776 566553 566554322 2222 222 345
Q ss_pred cEEEee
Q 021932 187 RLLGVT 192 (305)
Q Consensus 187 kviG~t 192 (305)
|++|+.
T Consensus 136 r~~g~h 141 (292)
T PRK07530 136 RFIGIH 141 (292)
T ss_pred cEEEee
Confidence 677753
No 69
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.40 E-value=3.7e-06 Score=82.85 Aligned_cols=114 Identities=16% Similarity=0.049 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.++|||.|+||+|+||++++..|+..|+ +|+.+|+... +....+.+......+..+... -..+.+.++|+||.+|+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~D-i~~~~~~~~D~ViHlAa 193 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRHD-VVEPILLEVDQIYHLAC 193 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEECc-cccccccCCCEEEECce
Confidence 4458999999999999999999999998 9999997531 111111111111223332211 12345789999999997
Q ss_pred CCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 124 VPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 124 ~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
... ....+..+.+..|+....++++.+.+.+. .+|.+|
T Consensus 194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 532 12234567788999999999999998764 444443
No 70
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.39 E-value=3.1e-06 Score=78.70 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhh----hhhhcc-----c--------CCceEEEEecCCCH
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT----ADISHM-----D--------TNAVVRGFLGQQQL 108 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~----~DL~~~-----~--------~~~~v~~~~~t~d~ 108 (305)
+||+|||+ |.+|..+|..|+..|+ +|+++|+++. .... .++... . ...+++. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 48999999 9999999999999998 9999999861 1110 111000 0 0112333 3467
Q ss_pred HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932 109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (305)
Q Consensus 109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~ 168 (305)
++++++||+||++.. ++..+.+.+..++.+++ |++++ ++|...+
T Consensus 76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~ 120 (288)
T PRK09260 76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTM 120 (288)
T ss_pred HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence 789999999999863 13455566666777777 45554 3455443
No 71
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.36 E-value=8.8e-06 Score=75.84 Aligned_cols=113 Identities=18% Similarity=0.123 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhccc-CCceEEEEe----cCCCHHHHhCCCCEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD-TNAVVRGFL----GQQQLEDALTGMDIVI 119 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~-~~~~v~~~~----~t~d~~~al~~aDiVI 119 (305)
.+||.|+||+|++|++++..|+.+|+ +|++++++... .....+.... ...++..+. ....+.++++++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 45899999999999999999999998 88888876521 1111121110 012222221 1234667889999999
Q ss_pred EcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHh-CCCcEEE
Q 021932 120 IPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKC-CPKAIVN 160 (305)
Q Consensus 120 i~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~-~p~aivi 160 (305)
.+|+........ ..+.+..|+.....+++.+.+. ...-+|.
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~ 124 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVV 124 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999854221112 2367788999999999998876 4444443
No 72
>PLN02427 UDP-apiose/xylose synthase
Probab=98.36 E-value=4.8e-06 Score=80.21 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIV 118 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiV 118 (305)
++|||.|+||+|++|++++..|+.. ++ +|+.+|.+... ....++.......+++.+.+ ..+++++++++|+|
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 4579999999999999999999987 46 89999975411 11111100000112332211 12456778899999
Q ss_pred EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
|.+|+..... .....+.+..|+....++++..++.+ . .++.+|
T Consensus 91 iHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~S 135 (386)
T PLN02427 91 INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFS 135 (386)
T ss_pred EEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEe
Confidence 9999853211 12234556778888888888887765 3 344444
No 73
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.36 E-value=3.2e-06 Score=78.83 Aligned_cols=100 Identities=25% Similarity=0.345 Sum_probs=66.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhh--------hhhhcccC---------CceEEEEecCCCH
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT---------NAVVRGFLGQQQL 108 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~--------~DL~~~~~---------~~~v~~~~~t~d~ 108 (305)
+||+|||+ |.+|..+|..++..|+ +|+++|.++.. ..+ .++..... ...+.. ++++
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~ 78 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTNL 78 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCCH
Confidence 58999999 9999999999999998 99999997611 110 01111100 011222 3455
Q ss_pred HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932 109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST 169 (305)
Q Consensus 109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l 169 (305)
+++++||+||.+. .++.++...+...+.+.. |+++| +||-..+-
T Consensus 79 -~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~ 123 (295)
T PLN02545 79 -EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS 123 (295)
T ss_pred -HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence 6799999999985 234566677777788776 56654 46666553
No 74
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.34 E-value=4.3e-06 Score=78.42 Aligned_cols=119 Identities=23% Similarity=0.366 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcc-----------cCCceEEEEecCCCHHHHh
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-----------DTNAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~-----------~~~~~v~~~~~t~d~~~al 112 (305)
.+||+|||+ |.+|..++..|+..|+ +|+++|.++. ......+.+. ....+++. ++++++++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence 358999999 9999999999999998 9999998761 1111111000 00012332 34676789
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~ 191 (305)
++||+||++.. .......++...+.... ++++| +||...+-.. ++ ..... .+.+++|+
T Consensus 78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~---~l-~~~~~-~~~~~ig~ 136 (311)
T PRK06130 78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPIT---AI-AQAVT-RPERFVGT 136 (311)
T ss_pred ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHH---HH-HhhcC-CcccEEEE
Confidence 99999999852 12344556666677766 45544 4555554332 22 22211 24567776
No 75
>PLN02650 dihydroflavonol-4-reductase
Probab=98.32 E-value=1.3e-05 Score=76.19 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcc-cCCceEEEEe----cCCCHHHHhCCCC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRGFL----GQQQLEDALTGMD 116 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~-~~~~~v~~~~----~t~d~~~al~~aD 116 (305)
+...++|.|+||+|++|++++..|+..|+ +|++++++.. .....++... .....+..+. ....++++++++|
T Consensus 2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d 79 (351)
T PLN02650 2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCT 79 (351)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence 44556999999999999999999999998 8888887642 1111122111 0011222221 1124567788999
Q ss_pred EEEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 117 IVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 117 iVIi~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
+||.+|+.......+ ..+.+..|+.....+++.+.+.+.-..|+.+|
T Consensus 80 ~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 80 GVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 999999753211112 23567889999999999998875322344443
No 76
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.30 E-value=9.4e-06 Score=83.93 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=81.7
Q ss_pred ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC
Q 021932 27 EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ 105 (305)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t 105 (305)
.|++ +.++-.|+.+ +.+||.|+||+|++|++++..|+.. ++ +|+.+|++...- .++.. ...+..+.+.
T Consensus 300 ~g~~-~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~---~~~~~~~~gD 368 (660)
T PRK08125 300 AGAR-LNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLG---HPRFHFVEGD 368 (660)
T ss_pred CCCE-ecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcC---CCceEEEecc
Confidence 3444 5666666654 5679999999999999999999875 67 999999865210 11111 1122222111
Q ss_pred -CC----HHHHhCCCCEEEEcCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 106 -QQ----LEDALTGMDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 106 -~d----~~~al~~aDiVIi~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
.| .+++++++|+||.+|+... .......+.+..|+....++++.+.+++ .-+|...|
T Consensus 369 l~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS 432 (660)
T PRK08125 369 ISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPST 432 (660)
T ss_pred ccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcc
Confidence 11 3456889999999987543 1223445677889999999999999886 33443333
No 77
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.29 E-value=1e-05 Score=76.90 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=96.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhh-cc--cCCceEEEEecC----CCHHHHhCCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS-HM--DTNAVVRGFLGQ----QQLEDALTGMD 116 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~-~~--~~~~~v~~~~~t----~d~~~al~~aD 116 (305)
++||.|+||+|++|++++..|+..+. +|+.+|+... .....++. .. ....++..+.+. .++.+.++++|
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d 92 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD 92 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence 35999999999999999999999987 9999997531 10011111 00 001123332211 13445678999
Q ss_pred EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-----CCCCccHHHHHHHHHHhCCCCCCcEE
Q 021932 117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-----NPVNSTVPIAAEVFKKVGTYDPKRLL 189 (305)
Q Consensus 117 iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-----NPvd~lt~~~~~~~~~~s~~p~~kvi 189 (305)
+||.+|+....+ .++..+....|+....++++.+++.+.+-+|...| ++.+.. . .+..-..|....
T Consensus 93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~--~-----~e~~~~~p~~~Y 165 (348)
T PRK15181 93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLP--K-----IEERIGRPLSPY 165 (348)
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCC--C-----CCCCCCCCCChh
Confidence 999999754321 13345678889999999999999886554443322 111100 0 000011223334
Q ss_pred EeeehhhHHHHHHHHHHhCCCCccee-EEEEccc
Q 021932 190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 222 (305)
Q Consensus 190 G~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~h 222 (305)
|.+-+...++....++..+++..-++ ..+.|.+
T Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 166 AVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 44333333333334555678777776 6788864
No 78
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.27 E-value=2e-05 Score=74.27 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVII 120 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi 120 (305)
.+||.|+||+|++|++++..|+..|+ +|++++++. ......++.......++..+.+ ..++.+.++++|+||.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 46899999999999999999999998 887777654 2111111111110112332221 1235567889999999
Q ss_pred cCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932 121 PAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (305)
Q Consensus 121 ~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t 163 (305)
+|+.......+ ..+++..|+.....+++.+.+.. .+.+|.+.|
T Consensus 87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS 131 (338)
T PLN00198 87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSS 131 (338)
T ss_pred eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeec
Confidence 99743211122 23456889999999999998874 344444333
No 79
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.26 E-value=1e-05 Score=81.09 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=68.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhh--------hh---ccc--CCceEEEEecCCCHHHHh
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMD--TNAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~D--------L~---~~~--~~~~v~~~~~t~d~~~al 112 (305)
+||+|||+ |.+|+.+|..|+..|+ +|.++|+++.. ....+ +. ... ...+++. ++++++++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence 58999999 9999999999999999 99999997621 11101 00 000 0012332 34677889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 170 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt 170 (305)
++||+||.+. .++.++.+.+...+.+.+++.. ++.||...+..
T Consensus 79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~ 121 (495)
T PRK07531 79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP 121 (495)
T ss_pred cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence 9999999985 2245566667777888775443 34677777653
No 80
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.25 E-value=1.5e-05 Score=74.84 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhh--------hhhcccC---------CceEEEEecCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------NAVVRGFLGQQQ 107 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~--------DL~~~~~---------~~~v~~~~~t~d 107 (305)
.+||+|||+ |.+|+++|..|+..|+ +|+++|+++. ...+. .+..... ..++.. +++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence 358999998 9999999999999998 9999999761 11100 1111110 112333 357
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 169 (305)
Q Consensus 108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l 169 (305)
+.+++++||+|+++.. ++....+.+...+.+..++..++ .||-....
T Consensus 76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~ 122 (308)
T PRK06129 76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSALL 122 (308)
T ss_pred HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence 8788999999999852 12344555666677777554444 45544433
No 81
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.22 E-value=2.1e-05 Score=74.18 Aligned_cols=106 Identities=19% Similarity=0.116 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cch--hhhhhhcccCCceEEEEe----cCCCHHHHhCCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTNAVVRGFL----GQQQLEDALTGMD 116 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g--~~~DL~~~~~~~~v~~~~----~t~d~~~al~~aD 116 (305)
..++|+|+||+|++|+.++..|+++|+ +|+-.=+++ .+. +..+|.... .+++.+. ..+.+.+|+++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 457999999999999999999999999 777666554 222 344555332 2233321 1245789999999
Q ss_pred EEEEcCCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhC
Q 021932 117 IVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCC 154 (305)
Q Consensus 117 iVIi~ag~~~~~g~-~r~d~~~~N~~i~~~i~~~I~~~~ 154 (305)
.||.+|....-... ...+++.-.++..+++.+.+.+..
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~ 119 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK 119 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC
Confidence 99999874322222 244788899999999999999998
No 82
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.21 E-value=1.9e-05 Score=78.01 Aligned_cols=113 Identities=18% Similarity=0.088 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
+.|||.|+||+|+||++++..|+..|+ +|+.+|.... +....+.+.....++..+.+. -...++.++|+||.+|+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~D-~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRHD-VVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEECC-ccChhhcCCCEEEEeeee
Confidence 457999999999999999999999998 8999986431 111111110011223332221 123467889999999975
Q ss_pred CC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 125 PR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 125 ~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
.. ....+..+.+..|+....++++.+++.+. .+|.+|
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S 232 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 232 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 32 11223466788999999999999988763 444443
No 83
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.21 E-value=2.8e-05 Score=75.92 Aligned_cols=119 Identities=25% Similarity=0.316 Sum_probs=75.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc----------------CCceEEEEecCCCHHH
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED 110 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~~ 110 (305)
|||+|||. |.||..+|..|+..|+ +|+++|+++.+. .+|.... ...+++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKV--DKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHH--HHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 58999998 9999999999999998 999999976211 1111100 0112333 346777
Q ss_pred HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHH
Q 021932 111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK 179 (305)
Q Consensus 111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~lt~~~~~~~~~ 179 (305)
+++++|+||++.+.|..... .-+...+.+..+.+.+.. ++.++++. |-|....-.+..++..+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 89999999999987754321 124455666666666654 45555544 45555554444444443
No 84
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.20 E-value=1e-05 Score=77.83 Aligned_cols=122 Identities=14% Similarity=0.016 Sum_probs=77.6
Q ss_pred ccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE--EecCCCHHHHh
Q 021932 35 RMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDAL 112 (305)
Q Consensus 35 ~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~~al 112 (305)
.+.+++.+-+..|||.|+||+|++|++++..|...|+ +|+.+|+.... ...+ ......+.. ......+.+++
T Consensus 10 ~~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~ 83 (370)
T PLN02695 10 ELEREPYWPSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSE---DMFCHEFHLVDLRVMENCLKVT 83 (370)
T ss_pred hcCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cccc---ccccceEEECCCCCHHHHHHHH
Confidence 3455555556678999999999999999999999998 99999975310 0000 000001110 00011234567
Q ss_pred CCCCEEEEcCCCCCCCC---CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932 113 TGMDIVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~ 162 (305)
+++|+||.+|+.....+ ......+..|+.....+++.+.+.+.+.+|.+.
T Consensus 84 ~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~S 136 (370)
T PLN02695 84 KGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYAS 136 (370)
T ss_pred hCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 89999999987432111 122335678999999999999888766555443
No 85
>PLN02214 cinnamoyl-CoA reductase
Probab=98.15 E-value=4e-05 Score=72.86 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hh-hhhhhcccCCceEEEEe----cCCCHHHHhCCCCE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV-TADISHMDTNAVVRGFL----GQQQLEDALTGMDI 117 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~-~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDi 117 (305)
+.++|.|+||+|++|++++..|+..|+ +|+.++++... .. ...+... ...+..+. ...++.++++++|+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCE
Confidence 345899999999999999999999998 88888875421 11 1112111 11222221 12346678899999
Q ss_pred EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932 118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161 (305)
Q Consensus 118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv 161 (305)
||.+|+... ....+.+..|+.....+++.+.+.+.+.+|.+
T Consensus 85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999998542 23456778899999999999998765544443
No 86
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.13 E-value=7.2e-05 Score=71.01 Aligned_cols=117 Identities=19% Similarity=0.074 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhh-hhhcccCCceEEE-EecCCCHHHHhCC--CCEEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-DISHMDTNAVVRG-FLGQQQLEDALTG--MDIVII 120 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~-DL~~~~~~~~v~~-~~~t~d~~~al~~--aDiVIi 120 (305)
.++|.|+||+|++|++++..|++.|. +|+.+|++.... ... .+........+.. .....++.+.+++ .|+||.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 46899999999999999999999998 899999865211 111 1111100011111 1111234445554 599999
Q ss_pred cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932 121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 121 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN 164 (305)
+|+.+... ..+....+..|+.....+++.+.+.+....++.+|.
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99854221 123355678899999999999887652234444443
No 87
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.13 E-value=1.3e-05 Score=75.21 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=71.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
|||.|+||+|++|+.++..|+..|+ +|+.++++.... ..+.+.. ..-+.+ .....++.++++++|+||.+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~-v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG-AELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC-CEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 5899999999999999999999998 999998864211 1111111 001111 111134678899999999987643
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
.. ...+....|......+++.+++.+.+-+|.+.+
T Consensus 76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 76 PS---DLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CC---CccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 21 122345668888899999999887665544433
No 88
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.12 E-value=8.5e-06 Score=62.84 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=61.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-eCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
||+|||+ |.+|+.++..|...+ ...+|.++ ++++. ...++.... . +..+ ..+..++++++|+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence 7999998 999999999999988 23488866 87652 122222211 1 1211 1246789999999999862
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP 165 (305)
| ..+.++++.+....++.+++-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 1 2256666677545578888877776
No 89
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=98.12 E-value=3e-05 Score=72.09 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=74.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
|||.|+||+|++|+.++..|+..|+ +|+++|++.... .++.+.. ...+.. .....++.++++++|+||.+++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLD-VEIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCC-ceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 4899999999999999999999997 999999865211 1111111 011111 111124567788999999998753
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
.....+..+....|+.....+++.+.+.+-+.+|.+.|
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 32334456677889999999999988776444444333
No 90
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.12 E-value=3.1e-05 Score=73.39 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-----CCHHHHhCCCCEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVI 119 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-----~d~~~al~~aDiVI 119 (305)
+|||.|+||+|++|++++..|+.. ++ +|+.+|+... ...++... ..++.+.+. ..+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 368999999999999999999875 56 8999997431 11111111 122222111 12335678999999
Q ss_pred EcCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 120 IPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 120 i~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
.+|+... ....+.......|+....++++.+.+.. . .++.+|
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~S 117 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPS 117 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEe
Confidence 9987532 2223344556778888999999988765 4 444443
No 91
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.12 E-value=3e-05 Score=75.38 Aligned_cols=116 Identities=17% Similarity=0.280 Sum_probs=69.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc------hhh----hhhhcccCCceEEEEecCCCHHHHhCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT----ADISHMDTNAVVRGFLGQQQLEDALTGMD 116 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~------g~~----~DL~~~~~~~~v~~~~~t~d~~~al~~aD 116 (305)
|||+|||. |+||..+|..++. |+ +|+.+|+++.+ |.. ..+.+.......+. ..+.+.+++.++||
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l-~~t~~~~~~~~~ad 75 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHF-NATLDKNEAYRDAD 75 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcE-EEecchhhhhcCCC
Confidence 58999998 9999999977774 77 99999998611 110 00111000011222 12345667889999
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHH
Q 021932 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPI 172 (305)
Q Consensus 117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-tNPvd~lt~~ 172 (305)
+||++.+.|....... -+...+++.++.|.+..|+.++++- |-|....-.+
T Consensus 76 ~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 76 YVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred EEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence 9999987663221111 1345556666666654455555443 5777665444
No 92
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.11 E-value=7.2e-05 Score=68.93 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=71.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch---hhhhhhcccCCceEEEEe----cCCCHHHHhCC--CCEE
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFL----GQQQLEDALTG--MDIV 118 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g---~~~DL~~~~~~~~v~~~~----~t~d~~~al~~--aDiV 118 (305)
||.|+||+|++|..++..|+..+...+|+++|...... ...++... ..+..+. ...++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 58999999999999999888776323889988643111 11122111 1222221 11234566776 8999
Q ss_pred EEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 119 IIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 119 Ii~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
|.+++.... .......++..|......+++.+.+...+..++.+|
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 999975321 112334567889999999999998876554455544
No 93
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.08 E-value=6.2e-05 Score=71.04 Aligned_cols=111 Identities=22% Similarity=0.357 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--c--C------CceEEEEecCCCHHHHhCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--T------NAVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~--~------~~~v~~~~~t~d~~~al~~a 115 (305)
++||+|+|+ |.-|+++|..|+.+++ +|+|+.+++. .+.|+... . . .+.++. ++|+++++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence 469999999 9999999999999998 9999998762 12223321 1 1 123332 57999999999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-cHHHHHHHHHHh
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKV 180 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~-lt~~~~~~~~~~ 180 (305)
|+|++... ...++++++++..+- ++.+++.+|.=.+. ...++++++++.
T Consensus 73 d~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 73 DIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred CEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence 99999752 244566666665443 56666666522111 112335555554
No 94
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.07 E-value=3.3e-05 Score=72.88 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh--hhhhhcccCCceEEEEe----cCCCHHHHhCCCCEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL----GQQQLEDALTGMDIVI 119 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~--~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDiVI 119 (305)
.++|.|+||+|++|++++..|+..+...+|+++|.+..... ..++.. ..+..+. ...++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 35899999999999999999988763238999997652211 111111 1222221 1123556778999999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
.+||....+ ..+..+.+..|+.....+++.+.+.+...+|.+.|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 999864322 22345678899999999999999876544444433
No 95
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.06 E-value=4.2e-05 Score=73.71 Aligned_cols=107 Identities=15% Similarity=0.243 Sum_probs=71.0
Q ss_pred ccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCC---chhhhhhhccc----C---
Q 021932 31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHMD----T--- 95 (305)
Q Consensus 31 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~-----~~el~L~D~~~~---~g~~~DL~~~~----~--- 95 (305)
+.|.+.-|++. ||+|||+ |.-|+++|..|..++. ..+|.|+.+++. +..+.++.+.. .
T Consensus 2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence 57778888775 9999999 9999999999998862 238999988762 12334444321 1
Q ss_pred ---CceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH--hC-CCcEEEEec
Q 021932 96 ---NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK--CC-PKAIVNLIS 163 (305)
Q Consensus 96 ---~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~--~~-p~aiviv~t 163 (305)
..++.. ++|+.+++++||+||++.. ...++++++++.. +- ++.+++.++
T Consensus 75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 75 IKLPDNIVA---VSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred CcCCCceEE---ecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 123443 4578889999999999852 2345666666665 32 344555443
No 96
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=98.05 E-value=6.4e-05 Score=64.27 Aligned_cols=91 Identities=27% Similarity=0.333 Sum_probs=65.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCCEEEEcCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi~ag~ 124 (305)
|.|+||+|++|..++..|+..++ +|+++-+++.+ ..+ ...++.+.+. .++.++++++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~--~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSK--AED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGG--HHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchh--ccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999997 99999886521 111 1222222111 2457889999999999875
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
+.+ +.+..+.+++.+++.+..-+++
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSSEEEE
T ss_pred hcc-----------ccccccccccccccccccccee
Confidence 533 2678889999998887554444
No 97
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.04 E-value=4.4e-05 Score=71.57 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhccc------CCceEEEEecCCCHHHHhCCCCE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD------TNAVVRGFLGQQQLEDALTGMDI 117 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~------~~~~v~~~~~t~d~~~al~~aDi 117 (305)
+|||+|||+ |.+|+.++..|+..|+ +|.++|+++.. ....+..+.. ....+.. .++.+++++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 369999998 9999999999999988 89999987521 1111100000 0012322 2466678899999
Q ss_pred EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932 118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (305)
Q Consensus 118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~ 168 (305)
||++... ..+.++++.+.++. |+.+++..+|-++.
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9998631 12455555666554 67788878766553
No 98
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=98.02 E-value=0.00016 Score=67.68 Aligned_cols=114 Identities=17% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcc-cCCceEEEEec----CCCHHHHhCCCCEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTNAVVRGFLG----QQQLEDALTGMDIVI 119 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~-~~~~~v~~~~~----t~d~~~al~~aDiVI 119 (305)
.++|.|+||+|++|++++..|+..|+ +|++..++... .....+... .....+..+.+ ...+.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 45999999999999999999999998 88766554421 111222111 00122332211 124567788999999
Q ss_pred EcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 021932 120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL 161 (305)
Q Consensus 120 i~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv 161 (305)
.+|+..... .....+++..|+.....+++.+.+.. .+.+|.+
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 999853211 11223467789999999999888753 3334433
No 99
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.01 E-value=0.00017 Score=67.43 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhhhhc-ccCCceEEEEe----cCCCHHHHhCCCCEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISH-MDTNAVVRGFL----GQQQLEDALTGMDIVI 119 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~DL~~-~~~~~~v~~~~----~t~d~~~al~~aDiVI 119 (305)
.++|.|+||+|++|++++..|+..|+ +|++++++.... ....+.. .....++..+. ...++++++++.|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 45899999999999999999999998 888887665211 1111111 01011232221 1124556788999999
Q ss_pred EcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhC-CCcEEE
Q 021932 120 IPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC-PKAIVN 160 (305)
Q Consensus 120 i~ag~~~~~-g-~~r~d~~~~N~~i~~~i~~~I~~~~-p~aivi 160 (305)
.+||..... . ....+.+..|+.....+.+.+.+.. ...+|.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~ 126 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVIL 126 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 999853211 1 1224567889999999999988764 333443
No 100
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.99 E-value=0.0001 Score=72.45 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc------------CCceEEEEecCCCHHHH
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD------------TNAVVRGFLGQQQLEDA 111 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~------------~~~~v~~~~~t~d~~~a 111 (305)
.++|||+|||. |+||..+|..|+. ++ +|+.||+++.+ +.+|.... ....+.. +++. ++
T Consensus 4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~--ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~ 73 (425)
T PRK15182 4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKR--ILELKNGVDVNLETTEEELREARYLKF---TSEI-EK 73 (425)
T ss_pred CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHH--HHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence 34589999998 9999999999876 56 99999998621 12222111 0012232 3454 67
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE-ecCCCCccHHHHHHHHHH
Q 021932 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL-ISNPVNSTVPIAAEVFKK 179 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv-~tNPvd~lt~~~~~~~~~ 179 (305)
+++||++|+|.+.|.+... ..+..-+....+.|.++. +..++|+ .|-|....-.++...+.+
T Consensus 74 ~~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 74 IKECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILAR 137 (425)
T ss_pred HcCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHh
Confidence 9999999999998864321 113344555556666665 3444444 356666554343333333
No 101
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=97.98 E-value=0.00019 Score=67.98 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=66.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE----ecCCCHHHHhCC--CCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~~al~~--aDiVIi 120 (305)
+||.|+||+|++|++++..|...|. ..++++|..+..+....+.+......+... ....++++++++ .|+||.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 5899999999999999999998886 256677764321211112111001112111 111234455663 899999
Q ss_pred cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh
Q 021932 121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC 153 (305)
Q Consensus 121 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~ 153 (305)
+||..... .....+.+..|+.....+++.+.++
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~ 115 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence 99864321 1223567788999999999998875
No 102
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.98 E-value=5.4e-05 Score=64.54 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
++||++||. |.+|+.++..|+..|+ +|..||+++ ....++.+.. .+.. .+++++++++|+||.+..
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v~-- 66 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCVP-- 66 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-SS--
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeecc--
Confidence 479999998 9999999999999999 999999864 2222333321 3322 357899999999999852
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHH--HHHhC-CCcEEEE
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEG--IAKCC-PKAIVNL 161 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~--I~~~~-p~aiviv 161 (305)
+.+.++++... +.... +..+++.
T Consensus 67 -------------~~~~v~~v~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 67 -------------DDDAVEAVLFGENILAGLRPGKIIID 92 (163)
T ss_dssp -------------SHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred -------------cchhhhhhhhhhHHhhccccceEEEe
Confidence 34556666666 55555 3444443
No 103
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.97 E-value=8e-05 Score=66.01 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
+|+++|+|+ |++|+.++..+...++ ||.+-..+..+..+..-.. ..+.+.. . ..++|.+.+|+||++..
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~--l~~~i~~---~-~~~dA~~~aDVVvLAVP-- 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAA--LGPLITG---G-SNEDAAALADVVVLAVP-- 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHh--hcccccc---C-ChHHHHhcCCEEEEecc--
Confidence 578999998 9999999999999998 9888866552222111111 1233443 2 34689999999999863
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv 166 (305)
.+-+.++.+++...-.+-++|=.|||.
T Consensus 70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 70 --------------FEAIPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred --------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence 223444455555433467888889995
No 104
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.97 E-value=6.7e-05 Score=70.48 Aligned_cols=79 Identities=22% Similarity=0.307 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
.|||+|||+ |.+|.++|..|...|+ +|.++|+++. .+++++++++|+||++..
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp-- 56 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS-- 56 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC--
Confidence 469999998 9999999999999998 9999998641 135677899999999852
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP 165 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tNP 165 (305)
...++++++.+..+ .++.+++..|+.
T Consensus 57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 57 --------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred --------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 12355566666653 467778777763
No 105
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.95 E-value=6e-05 Score=70.14 Aligned_cols=120 Identities=17% Similarity=0.232 Sum_probs=71.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhh---hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~---~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|||+|+|+ |.+|..+|..|...|+ +|.++++.+ ..... ..+........+.. ...++.+++.+++|+||++.
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPG-PVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecc-eeecCHHHccCCCCEEEEEe
Confidence 58999999 9999999999999888 899999822 11110 01111000001111 11235555568999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE-eee
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM 193 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG-~t~ 193 (305)
... .+.++++.+.++- ++.+|+.+.|.++....+ .+ .+|++++++ ++.
T Consensus 77 k~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l-----~~--~~~~~~v~~g~~~ 126 (305)
T PRK12921 77 KAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL-----EP--YFGRERVLGGVVF 126 (305)
T ss_pred ccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH-----HH--hCCcccEEEEEEE
Confidence 321 1344555555543 567788889998754322 22 267777774 443
No 106
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.95 E-value=0.00012 Score=68.72 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=70.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchh-hhhhhcccCCceEEEEec-CCC---HHHHhC--CCCEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV-TADISHMDTNAVVRGFLG-QQQ---LEDALT--GMDIV 118 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~-~~DL~~~~~~~~v~~~~~-t~d---~~~al~--~aDiV 118 (305)
|||.|+||+|++|++++..|+..|+ +|+++|... .... ...+.+.. ...+..+.. -+| +.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 5899999999999999999999988 899998643 1111 11121111 111111111 122 334454 68999
Q ss_pred EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
|.+|+..... .....+.+..|+.....+++.+.+.+.+.+|.
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 121 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIF 121 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9998754311 12345678889999999999998876444443
No 107
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.94 E-value=9e-05 Score=68.30 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=70.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCC-CEEEEcCCCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM-DIVIIPAGVPR 126 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a-DiVIi~ag~~~ 126 (305)
+|.|+|++|++|++++..|++.|+ +|+.+|.........+ .+.. ....... ......+.+++. |.||.+++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~-~~~~d~~-~~~~~~~~~~~~~d~vih~aa~~~ 76 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE-FVVLDLT-DRDLVDELAKGVPDAVIHLAAQSS 76 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc-eeeeccc-chHHHHHHHhcCCCEEEEccccCc
Confidence 599999999999999999999998 9999998652111111 1110 0000000 001234556677 99999998654
Q ss_pred CCCCch---hhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 127 KPGMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 127 ~~g~~r---~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
.++..+ .++...|+...+++++...+....-++.
T Consensus 77 ~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~ 113 (314)
T COG0451 77 VPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVF 113 (314)
T ss_pred hhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 444322 3578899999999999999944333333
No 108
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.94 E-value=0.00011 Score=69.27 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhh---hhhhcccCC---ceEEEEecCCCHHHHhCCC
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---ADISHMDTN---AVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~---~DL~~~~~~---~~v~~~~~t~d~~~al~~a 115 (305)
|++.+|||+|+|+ |.+|..+|..|...|+ +|.+++++...... ..+...... ..+.. .++. ++...+
T Consensus 1 ~~~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 73 (313)
T PRK06249 1 MDSETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQA---YRSA-EDMPPC 73 (313)
T ss_pred CCCcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceE---Ecch-hhcCCC
Confidence 4566789999999 9999999999999888 99999986521110 011100000 11222 1232 457889
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~ 191 (305)
|+||++.-.. . ..++++.+... .|++.++...|=++.-- .+.+ -+|+.+|++-
T Consensus 74 D~vilavK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~--~~~~~~v~~g 127 (313)
T PRK06249 74 DWVLVGLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLRE--ILPAEHLLGG 127 (313)
T ss_pred CEEEEEecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHH--HCCCCcEEEE
Confidence 9999985221 1 12334444443 37888888889887542 2233 2677787744
No 109
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.93 E-value=6.1e-05 Score=68.79 Aligned_cols=99 Identities=20% Similarity=0.262 Sum_probs=68.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP 128 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~ 128 (305)
|.|+||+|++|++++..|+..|+ +|+.++++....... .. ..+..... ....++++++|+||.+++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999999887 999999876211100 00 00111111 23357889999999999865432
Q ss_pred C----CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 021932 129 G----MTRDDLFNINAGIVKTLCEGIAKCCPK 156 (305)
Q Consensus 129 g----~~r~d~~~~N~~i~~~i~~~I~~~~p~ 156 (305)
+ ....++.+.|+...+.+++.+.+.+..
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 2 123456677999999999999988753
No 110
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.93 E-value=0.00011 Score=69.80 Aligned_cols=105 Identities=16% Similarity=0.097 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh--hhhhhcccCCceEEEEec----CCCHHHHhCCCCEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLG----QQQLEDALTGMDIV 118 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~--~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiV 118 (305)
..+||.|+||+|++|++++..|++.|. +|++++.+..... ..++.. ..++..+.. ...+.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 346999999999999999999999998 8888887542111 111211 122332211 12345667889999
Q ss_pred EEcCCCCCCC---C-Cchhh-----HHHhhHHHHHHHHHHHHHhC
Q 021932 119 IIPAGVPRKP---G-MTRDD-----LFNINAGIVKTLCEGIAKCC 154 (305)
Q Consensus 119 Ii~ag~~~~~---g-~~r~d-----~~~~N~~i~~~i~~~I~~~~ 154 (305)
|.+|+..... . .+..+ .+..|+.....+++.+.+..
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~ 128 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK 128 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC
Confidence 9999864211 1 11222 23344577888888887764
No 111
>PLN02778 3,5-epimerase/4-reductase
Probab=97.92 E-value=0.00014 Score=67.97 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEc
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIP 121 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ 121 (305)
...|||.|+||+|++|++++..|..+|+ +|++...+ +.+.. .+..+++ +.|+||.+
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~------------~v~~~l~~~~~D~ViH~ 64 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA------------SLEADIDAVKPTHVFNA 64 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH------------HHHHHHHhcCCCEEEEC
Confidence 3457999999999999999999999988 77653221 11110 0112222 68999999
Q ss_pred CCCCCCCC-----CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 021932 122 AGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156 (305)
Q Consensus 122 ag~~~~~g-----~~r~d~~~~N~~i~~~i~~~I~~~~p~ 156 (305)
|+....+. ....+.+..|+....++++.+++.+..
T Consensus 65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 98643221 234667889999999999999988654
No 112
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.92 E-value=7.2e-05 Score=70.89 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh----hhhcccC------CceEEEEecCCCHHHHhCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDT------NAVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~----DL~~~~~------~~~v~~~~~t~d~~~al~~a 115 (305)
+|||+|||+ |.+|..+|..|...|+ +|.++|+++...... .+.+... ..++.. +++. ++++++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 74 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAF---STDP-AALATA 74 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEe---ccCh-hhccCC
Confidence 579999999 9999999999999998 999999854110000 0000000 001221 3354 678999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST 169 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l 169 (305)
|+||++...+. ..++++.+.+.. ++.+|+..+|..+..
T Consensus 75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 99999863221 123445555553 677777788987753
No 113
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.91 E-value=0.00017 Score=70.68 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhh----------hhcc----cCCceEEEEecCCCHHHH
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----------ISHM----DTNAVVRGFLGQQQLEDA 111 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~D----------L~~~----~~~~~v~~~~~t~d~~~a 111 (305)
++||+|||. |+||..+|..|+..|+ +|..+|+++.+-..+. +... .....+.. +++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~---- 72 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT---- 72 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee---ecc----
Confidence 469999998 9999999999999998 9999999862111110 1000 00111222 122
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHH
Q 021932 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPI 172 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~lt~~ 172 (305)
.++||+||++.+.|.+... ..+...+.+.++.|.++. ++.+|++- |.|....-.+
T Consensus 73 ~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~ 129 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM 129 (415)
T ss_pred cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 3589999999988754321 124455666677777766 45555544 4577655443
No 114
>PLN02583 cinnamoyl-CoA reductase
Probab=97.90 E-value=0.00029 Score=65.48 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=71.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch----hhhhhhcccCCceEEEEe----cCCCHHHHhCCCCEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGFL----GQQQLEDALTGMDIV 118 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g----~~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDiV 118 (305)
++|.|+||+|++|++++..|+..|+ +|++++++.... ...++... ..++..+. ...++.++++++|.|
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 4899999999999999999999998 898887643111 11222111 11222221 112456789999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 021932 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL 161 (305)
Q Consensus 119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv 161 (305)
+.+++.+........+++..|+.....+++.+.+.. ...+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~ 126 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFT 126 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 877654322111235678889999999999988763 3444443
No 115
>PLN02572 UDP-sulfoquinovose synthase
Probab=97.90 E-value=8.4e-05 Score=73.39 Aligned_cols=179 Identities=14% Similarity=0.134 Sum_probs=96.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---ch------------hhhhhh---cccCCceEEEEe
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTNAVVRGFL 103 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g------------~~~DL~---~~~~~~~v~~~~ 103 (305)
.+-+.+||.|+||+|++|++++..|+..|+ +|+++|.... .. ....+. +.. ...++.+.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~ 119 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYV 119 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEE
Confidence 344557999999999999999999999998 9999985321 00 000010 000 11222221
Q ss_pred cC----CCHHHHhC--CCCEEEEcCCCCCCC-CC-c---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec------CCC
Q 021932 104 GQ----QQLEDALT--GMDIVIIPAGVPRKP-GM-T---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS------NPV 166 (305)
Q Consensus 104 ~t----~d~~~al~--~aDiVIi~ag~~~~~-g~-~---r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t------NPv 166 (305)
+. ..++++++ +.|+||.+|+....+ .. + ....+..|+.....+++.+.+.+.+..++.+| +|-
T Consensus 120 ~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~ 199 (442)
T PLN02572 120 GDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN 199 (442)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC
Confidence 11 23445555 489999998653211 11 1 12345679999999999999887654444333 111
Q ss_pred CccH--HH-HHHHHHHhC---CCCCCcEEEeeehhhHHHHHHHHHHhCCCCccee-EEEEcccC
Q 021932 167 NSTV--PI-AAEVFKKVG---TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (305)
Q Consensus 167 d~lt--~~-~~~~~~~~s---~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg 223 (305)
+.+. ++ ..+.....+ -..|....|.+-+-..++....++..|++..-++ ..|.|.+.
T Consensus 200 ~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 200 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 0000 00 000000000 1122345555433333444455667788777776 67888653
No 116
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.90 E-value=0.00012 Score=73.99 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhc-----cc--CCceEEEEec----CCCHHHH
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH-----MD--TNAVVRGFLG----QQQLEDA 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~-----~~--~~~~v~~~~~----t~d~~~a 111 (305)
+.+.|.|+||+|++|..++..|+..|+ +|++++++... ....++.+ .. ...++..+.+ ..++.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 345899999999999999999999998 89999887621 11111211 00 0112222211 1245567
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
+.++|+||+++|............+..|......+++.+.+.+-..+|++.|
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 8999999999986533211222345668888899999988776555555444
No 117
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.89 E-value=0.00027 Score=66.82 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=65.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE----ecCCCHHHHhC--CCCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALT--GMDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~~al~--~aDiVIi 120 (305)
|||.|+||+|++|++++..|+..|. ..++.+|.....+....+.+......+..+ ....++.++++ ++|+||.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999998875 246667753311111111111001112211 11123445554 4799999
Q ss_pred cCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHh
Q 021932 121 PAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKC 153 (305)
Q Consensus 121 ~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~ 153 (305)
+|+.... ......+.+..|+.....+++.+.++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 9986421 11234567889999999999999875
No 118
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=97.88 E-value=0.00014 Score=68.73 Aligned_cols=112 Identities=16% Similarity=0.029 Sum_probs=70.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcc--cCCceEEEEe----cCCCHHHHh
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGFL----GQQQLEDAL 112 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~--~~~~~v~~~~----~t~d~~~al 112 (305)
++.+.+||.|+||+|++|++++..|+..|. +|+++|.... ......+... .....+..+. ...++.+++
T Consensus 2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 79 (340)
T PLN02653 2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL 79 (340)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence 456677999999999999999999999998 9999987541 1111111100 0011222211 112334455
Q ss_pred CC--CCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932 113 TG--MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCP 155 (305)
Q Consensus 113 ~~--aDiVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p 155 (305)
++ .|+||.+|+...... ......+..|+.....+++.+.+...
T Consensus 80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 54 599999998643211 12234456788889999999988874
No 119
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.87 E-value=0.00012 Score=69.21 Aligned_cols=98 Identities=15% Similarity=0.352 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhc----------ccCCceEEEEecCCCHHHHh-CCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----------MDTNAVVRGFLGQQQLEDAL-TGM 115 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~----------~~~~~~v~~~~~t~d~~~al-~~a 115 (305)
|||+|||| |.+|+.++..|...|+ +|.++++++.. +..+.. ......++. ++|+.+++ .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTT--FESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHH--HHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence 58999999 9999999999999987 89999986521 111111 001112333 24666666 589
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-h-CCCcEEEEecCCCCc
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C-CPKAIVNLISNPVNS 168 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~-~-~p~aiviv~tNPvd~ 168 (305)
|+||++.- ...+.++++.+.. + .++..++..+|=.+.
T Consensus 73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999852 2335556666665 3 367777777877643
No 120
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.84 E-value=0.0001 Score=68.72 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV 124 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~ 124 (305)
|||.|+||+|++|++++..|...| +|+.+|+... ....|+.+. ..+.+.++ ++|+||.+|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence 589999999999999999998777 4677776431 011122221 12334555 58999999975
Q ss_pred CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932 125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP 155 (305)
Q Consensus 125 ~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p 155 (305)
.... ..........|+.....+++.+.+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~ 97 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA 97 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4221 122334456799999999999998763
No 121
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.84 E-value=0.00027 Score=65.58 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhh---hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~---~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
|||+|+|+ |.+|..+|..|.+.|+ +|.++|+++. .... ..+.+.. ..... ...++.++ ++++|+||++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~--~~~~~-~~~~~~~~-~~~~d~vila 73 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGE--ITVPV-LAADDPAE-LGPQDLVILA 73 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCc--eeecc-cCCCChhH-cCCCCEEEEe
Confidence 58999999 9999999999999887 9999998541 1110 0110110 00111 11234434 4999999998
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCCccH
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTV 170 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd~lt 170 (305)
.... -+.++++.+..+ .++..|+...|.++...
T Consensus 74 ~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 74 VKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred cccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 6321 134445555544 36778888899987653
No 122
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.83 E-value=8.5e-05 Score=70.29 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhc-------cc-CCceEEEEecCCCHHHHhCCCCE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-------MD-TNAVVRGFLGQQQLEDALTGMDI 117 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~-------~~-~~~~v~~~~~t~d~~~al~~aDi 117 (305)
+|||+|||+ |.+|+.++..|+..|+ +|.++|+++.......-.+ .. ....+.. +++++++++++|+
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD~ 77 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGADF 77 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCCE
Confidence 569999999 9999999999999998 9999999652111111000 00 0111332 2466788899999
Q ss_pred EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
||++.... .++++++. ..|..+++.++|..+
T Consensus 78 Vi~~v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 78 AVVAVPSK----------------ALRETLAG---LPRALGYVSCAKGLA 108 (328)
T ss_pred EEEECchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence 99985211 12333333 236677887888654
No 123
>PLN02240 UDP-glucose 4-epimerase
Probab=97.83 E-value=0.00032 Score=66.19 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhccc--CCceEEEEec----CCCHHHHhC--C
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD--TNAVVRGFLG----QQQLEDALT--G 114 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~--~~~~v~~~~~----t~d~~~al~--~ 114 (305)
+.+||.|+||+|++|++++..|+..|+ +|+++|.... ......+.+.. ....+..+.+ ..+++++++ +
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 446999999999999999999999887 8999986431 11111111110 0112222111 123333444 6
Q ss_pred CCEEEEcCCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 115 MDIVIIPAGVPRK-PG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 115 aDiVIi~ag~~~~-~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
.|+||.+++.... .. ....+.+..|+.....+++.+.+.+...++.
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 129 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVF 129 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 8999999986421 11 2345678889999999999888766444443
No 124
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.80 E-value=0.00031 Score=72.14 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=71.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----------CCHHHHhCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----------QQLEDALTG 114 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~--~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----------~d~~~al~~ 114 (305)
|||.|+||+|++|++++..|+. .+. +|++++++.......++.......+++.+.+. .++ +.+++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence 5899999999999999999984 555 99999986422221112111000122221111 122 33489
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932 115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162 (305)
Q Consensus 115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~ 162 (305)
+|+||.+|+.... .....+....|+...+.+++.+.+...+.++.+.
T Consensus 78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~S 124 (657)
T PRK07201 78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATFHHVS 124 (657)
T ss_pred CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999999985422 2334556778999999999999887655555443
No 125
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.80 E-value=0.00043 Score=71.67 Aligned_cols=121 Identities=14% Similarity=0.032 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-CC---HHHHh--CCCC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL--TGMD 116 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al--~~aD 116 (305)
+-+++||.|+||+|++|++++..|+..+...+|+.+|..........+........++.+.+. +| ....+ .++|
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 345679999999999999999999887433389999974311111111110001223332211 22 21222 6899
Q ss_pred EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 117 iVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
+||.+|+...... ....++...|+.....+++.+++.+.-..+|.+|
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S 131 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS 131 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999998643211 1234567889999999999998876322344443
No 126
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.79 E-value=0.00016 Score=66.18 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=65.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCC--CEEEEcCCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP 125 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~ 125 (305)
||.|+||+|++|++++..|+..|+ +|++++... .|+.+. .+++++++++ |+||.+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999999888 899988641 233221 1344566665 9999999864
Q ss_pred CCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932 126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCP 155 (305)
Q Consensus 126 ~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p 155 (305)
.... ......+..|+.....+++.+.+...
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 93 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA 93 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3221 23445677899999999999887654
No 127
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.78 E-value=0.00019 Score=68.48 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc----cC-------CceEEEEecCCCHHHHhC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------NAVVRGFLGQQQLEDALT 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~----~~-------~~~v~~~~~t~d~~~al~ 113 (305)
.++||+|+|+ |.+|+.++..|...+ +++++..++.. ..++... .. ...+.. ++|+.++++
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~ 76 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN 76 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence 3579999999 999999999999887 35677765421 1112110 00 112332 357778899
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~ 168 (305)
++|+||++.. ...++++++++..+- ++..++.++|-++.
T Consensus 77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 9999999852 234666777777654 67778888887764
No 128
>PRK06194 hypothetical protein; Provisional
Probab=97.78 E-value=0.00092 Score=61.22 Aligned_cols=115 Identities=19% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHhC------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------ 113 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~------ 113 (305)
.++|.|+||+|++|++++..|+..|. +|+++|++. +.....++... ..++..+.. -+| ++++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999998 899999865 22222333321 122332211 122 223333
Q ss_pred -CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCC-----cEEEEecC
Q 021932 114 -GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPK-----AIVNLISN 164 (305)
Q Consensus 114 -~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~I~~~~p~-----aiviv~tN 164 (305)
..|+||.+||..... ..+. ...+..|+.... .+.+.+.+.+.+ +.++++|.
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 148 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTAS 148 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCC
Confidence 469999999874321 1111 223555655444 444446555432 45555543
No 129
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.77 E-value=0.00033 Score=66.27 Aligned_cols=106 Identities=12% Similarity=0.014 Sum_probs=66.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hhhhhhhc-c--cCCceEEEEec----CCCHHHHhCC--
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISH-M--DTNAVVRGFLG----QQQLEDALTG-- 114 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~~~DL~~-~--~~~~~v~~~~~----t~d~~~al~~-- 114 (305)
+||.|+||+|++|++++..|+..|+ +|+++|+.... .....+.. . .....+..+.+ ...+.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999998 99999986421 11111110 0 00112222211 1134455664
Q ss_pred CCEEEEcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhC
Q 021932 115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC 154 (305)
Q Consensus 115 aDiVIi~ag~~~~~-g-~~r~d~~~~N~~i~~~i~~~I~~~~ 154 (305)
.|+||.+|+..... . ......+..|+.....+++.+.+.+
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~ 120 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG 120 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999864321 1 1123445667778889999988875
No 130
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.76 E-value=0.00012 Score=59.35 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=47.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--cCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
||+|+||+|++|..+..+|..++...-+.+++.....|+.+.-.+. .....+.... .+. +.+.++|+||.|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADP-EELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSG-HHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cch-hHhhcCCEEEecC
Confidence 7999999999999999999998877667777765534433222211 1122333321 243 6789999999995
No 131
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.75 E-value=0.00019 Score=68.70 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=48.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---Cchhhhhhh--ccc--C------CceEEEEecCCCH
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------NAVVRGFLGQQQL 108 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~------~~~el~L~D~~~---~~g~~~DL~--~~~--~------~~~v~~~~~t~d~ 108 (305)
||+|||+ |..|.++|..|..++ +..+|.|+.+++ -......+. |.. . ...++. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 6999999 999999999999877 223999998843 111222222 111 1 123443 4588
Q ss_pred HHHhCCCCEEEEcC
Q 021932 109 EDALTGMDIVIIPA 122 (305)
Q Consensus 109 ~~al~~aDiVIi~a 122 (305)
++++++||+||++.
T Consensus 77 ~eal~~ADiIIlAV 90 (342)
T TIGR03376 77 VEAAKGADILVFVI 90 (342)
T ss_pred HHHHhcCCEEEEEC
Confidence 89999999999985
No 132
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.00036 Score=67.16 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chhh----hhhh----cccCCceEEEEecCCCHHHH
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT----ADIS----HMDTNAVVRGFLGQQQLEDA 111 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~~----~DL~----~~~~~~~v~~~~~t~d~~~a 111 (305)
.++|+|||- |+||..+|..++..|+ .++-+|+++. .|+. .++. ......+++. |+|+ +.
T Consensus 9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~ 81 (436)
T COG0677 9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE 81 (436)
T ss_pred ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence 379999998 9999999999999999 9999999871 2221 1111 1112345664 4576 66
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEE--EEecCCCCccHHHH
Q 021932 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV--NLISNPVNSTVPIA 173 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiv--iv~tNPvd~lt~~~ 173 (305)
++.||++|||..+|.+... +-++..+.+-++.|.++-.++=+ +=.|-|....-.++
T Consensus 82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~ 139 (436)
T COG0677 82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV 139 (436)
T ss_pred cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence 8899999999988765422 12345566666777766644433 33367777654443
No 133
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.71 E-value=0.00021 Score=66.21 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=45.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|||+|||. |.+|.+++..|...|+ +|.++|.++ ....+.+... +.. .+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~------~~~--~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGL------VDE--ASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCC------ccc--ccCCH-hHhcCCCEEEEcC
Confidence 58999998 9999999999999888 999999875 1111111110 111 12344 5789999999996
No 134
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.71 E-value=0.00036 Score=64.74 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=63.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC-HHHHh-----CCCCEEEEcC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMDIVIIPA 122 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d-~~~al-----~~aDiVIi~a 122 (305)
|.|+||+|++|++++..|+..|+ ..+.++|..........+.+.+. ..... ..+ .++.+ .++|+||.+|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999998886 25667786532111011111110 00000 011 12222 3699999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p 155 (305)
+.+..........+..|+....++++.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~ 109 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI 109 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 854333333445678899999999999988764
No 135
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.70 E-value=0.00043 Score=67.21 Aligned_cols=115 Identities=19% Similarity=0.142 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--ch--hhhhhhcccCCce-EEE-EecCCCHHHHhC----
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG--VTADISHMDTNAV-VRG-FLGQQQLEDALT---- 113 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g--~~~DL~~~~~~~~-v~~-~~~t~d~~~al~---- 113 (305)
.+.+||.|+||+|++|+.++..|+..|+ +|++++++.. .. ...++........ +.. .....++.++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3346999999999999999999999998 9999998652 11 1111111100111 111 111123445566
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
++|+||.+++.+... ..+.+..|....+.+++.+++.+.+-+|.+.|
T Consensus 136 ~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 136 PVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred CCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 589999988753211 12345668888889999988876554544443
No 136
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.00057 Score=63.71 Aligned_cols=165 Identities=19% Similarity=0.160 Sum_probs=103.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHh--CCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL--TGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al--~~aDiVIi~ag 123 (305)
|+|.|+|++|++||+.+..|++.|+ +++.+|... .|...-+.... ...+.+ +....-+.+.| ...|.||..||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~-~g~~~~v~~~~-~~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLS-NGHKIALLKLQ-FKFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC-CCCHHHhhhcc-CceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence 5899999999999999999999999 999999854 22211111100 011111 00000122222 47899999987
Q ss_pred CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhh
Q 021932 124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-----SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV 196 (305)
Q Consensus 124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-----tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds 196 (305)
...-. =+..++++..|+--...+++.+.+.+.+-+|+-. .+|..+ ++ +| ..-..|.+--|-+-|-+
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-~E----~~~~~p~NPYG~sKlm~ 149 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-SE----TSPLAPINPYGRSKLMS 149 (329)
T ss_pred ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-CC----CCCCCCCCcchhHHHHH
Confidence 53211 1235788999999999999999999988777543 355442 11 11 12234556667776667
Q ss_pred HHHHHHHHHHhCCCCccee-EEEEccc
Q 021932 197 VRANTFVAEVLGLDPREVD-VPVVGGH 222 (305)
Q Consensus 197 ~R~~~~la~~l~v~~~~V~-~~vlG~h 222 (305)
.+.-..+++..+.+-.-++ .-+.|-|
T Consensus 150 E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 150 EEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHhCCCcEEEEEecccccCC
Confidence 6777777777775554444 4455544
No 137
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.66 E-value=0.00038 Score=65.81 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhCCCCcEEEEEeCCCC--c--------hh--hhhhhc----cc---------CCceEEEEecCCCHHHHh
Q 021932 58 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TADISH----MD---------TNAVVRGFLGQQQLEDAL 112 (305)
Q Consensus 58 VGs~la~~L~~~~~~~el~L~D~~~~--~--------g~--~~DL~~----~~---------~~~~v~~~~~t~d~~~al 112 (305)
+|..+|..++..|+ +|+|+|+++. . +. ..++.+ .. ...+++... +.|+++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 57889999999999 9999999861 1 11 001000 00 123455431 22466889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~ 191 (305)
++||+||.+. .+|.++.+.+..++.+.+ |++++ .||-..+...-+ ..... .|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l----a~~~~-~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL----QRHVA-HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH----HhhcC-CcccEEEE
Confidence 9999999985 347788999999999998 66666 788777654322 22233 35788887
Q ss_pred e
Q 021932 192 T 192 (305)
Q Consensus 192 t 192 (305)
.
T Consensus 137 H 137 (314)
T PRK08269 137 H 137 (314)
T ss_pred e
Confidence 3
No 138
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.65 E-value=0.00016 Score=66.83 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=66.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
+||+|+||+|||||+++-.|+..|+ +|..+|... .|....++|...+++..... .......+..+|-|+..|....
T Consensus 28 lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~f-tg~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAapas 103 (350)
T KOG1429|consen 28 LRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYF-TGRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAAPAS 103 (350)
T ss_pred cEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccc-ccchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhccCCC
Confidence 6999999999999999999999997 999999854 23334455554344333221 1123467899999999876432
Q ss_pred CCC--CchhhHHHhhHHHHHHHHHHHHHhC
Q 021932 127 KPG--MTRDDLFNINAGIVKTLCEGIAKCC 154 (305)
Q Consensus 127 ~~g--~~r~d~~~~N~~i~~~i~~~I~~~~ 154 (305)
.++ .+-.+.+..|.-.........++.+
T Consensus 104 p~~y~~npvktIktN~igtln~lglakrv~ 133 (350)
T KOG1429|consen 104 PPHYKYNPVKTIKTNVIGTLNMLGLAKRVG 133 (350)
T ss_pred CcccccCccceeeecchhhHHHHHHHHHhC
Confidence 222 2334444555554555555555444
No 139
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.63 E-value=0.00028 Score=62.23 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=69.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCC--CEEEEcCCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP 125 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~ 125 (305)
|.|+||+|++|+.++..|+..+. +++.+.... ............ ..... .....++.+.+++. |.||.+|+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~-~~~~d-l~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVE-FVIGD-LTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEE-EEESE-TTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEE-EEEee-ccccccccccccccCceEEEEeeccc
Confidence 78999999999999999999998 666555443 211111111100 00000 01112455667777 9999999864
Q ss_pred C--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 126 R--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 126 ~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
. .......+.+..|+...+.+++.+.+....-++...|
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS 116 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSS 116 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 2 1112346778889999999999999998744443333
No 140
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.61 E-value=0.00053 Score=63.40 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=64.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH----hCCCCEEEEcCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVIIPAGV 124 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a----l~~aDiVIi~ag~ 124 (305)
|.|+||+|++|++++..|...|.. +|+++|.........++........+. ....++.. +.+.|+||.+|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGHKFLNLADLVIADYID---KEDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCchhhhhhhheeeeccCc---chhHHHHHHhhccCCCCEEEECccc
Confidence 579999999999999999988852 788888654211111111100000111 01112222 2479999999986
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p 155 (305)
......+..+.+..|+.....+++.+.+...
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~ 107 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI 107 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4322233455678899999999999988764
No 141
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.60 E-value=0.0013 Score=58.54 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.++|.|+||+|.+|..++..|++.|. +|++++++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~ 39 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE 39 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 445999999999999999999999998 899999876
No 142
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.59 E-value=0.00043 Score=63.34 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
++||+|||+ |.+|..++..|...+. ..++.++|+++.. ...+.+.. .+.. ..+..+.++++|+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 579999998 9999999999988773 2378999986521 11122210 1121 2345677899999999852
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
...++++++.+..+. +..|+..+|-+.
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 123455555555444 456777777654
No 143
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.59 E-value=0.0006 Score=65.41 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEE----ecCCCHHHHhCCCCEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI 119 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~----~~t~d~~~al~~aDiVI 119 (305)
++.++.|+||+|++|.+++..|.+++...||.++|.... ...-.|.... ....++.. ....+...+++++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 345899999999999999999999885669999998662 1111111110 11222221 1123567889999 777
Q ss_pred EcCCCCC-CCCC-chhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932 120 IPAGVPR-KPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAI 158 (305)
Q Consensus 120 i~ag~~~-~~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~ai 158 (305)
+++..+. ..++ .|......|++..+.+.+.+.+.+-+..
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~l 121 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRL 121 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEE
Confidence 7654332 2223 3666778899999999999999985443
No 144
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.58 E-value=0.00048 Score=64.60 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=47.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+||+|||+ |.+|..++..|...++..+|.++|+++. ...+.+ .. ..... ..+.+++++++|+||++..
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g--~~~~~---~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LG--LGDRV---TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CC--CCcee---cCCHHHHhcCCCEEEECCC
Confidence 58999998 9999999999998886558999998752 111111 11 00111 1345678899999999974
No 145
>PRK07680 late competence protein ComER; Validated
Probab=97.58 E-value=0.00055 Score=63.13 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
|||+|||+ |.+|..++..|...+. ..+|.++|++... ...+.+. ...+... .+..+.++++|+||++.-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~--~~g~~~~---~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER--YPGIHVA---KTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH--cCCeEEE---CCHHHHHHhCCEEEEecC-
Confidence 48999998 9999999999988874 2479999986521 1222221 1123322 345677899999999861
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN 167 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd 167 (305)
-..+.++++.+..+- ++.+|+-++|++.
T Consensus 72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 122445555555543 5678888888875
No 146
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.56 E-value=0.0014 Score=63.47 Aligned_cols=150 Identities=21% Similarity=0.137 Sum_probs=82.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||.|||+ |+||+.+|..|++++. .+|.+.|+... ...+.+..+... ...+.. .....+.+.+++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence 469999999 9999999999999885 59999999752 122222221110 011111 111245688899999999975
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe---e---ehhhH
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV---T---MLDVV 197 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~---t---~Lds~ 197 (305)
... +. .+++.+.+.+-+ ++-.|+-.+.. ...-+.++++ .+.++ . -+++.
T Consensus 78 ~~~------------~~----~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~A------git~v~~~G~dPGi~nv 132 (389)
T COG1748 78 PFV------------DL----TILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKA------GITAVLGCGFDPGITNV 132 (389)
T ss_pred chh------------hH----HHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHc------CeEEEcccCcCcchHHH
Confidence 321 22 344444444433 44455555443 3223333333 23333 1 24444
Q ss_pred HHHHHHHHHhCCCCcceeEEE--EcccCC
Q 021932 198 RANTFVAEVLGLDPREVDVPV--VGGHAG 224 (305)
Q Consensus 198 R~~~~la~~l~v~~~~V~~~v--lG~hg~ 224 (305)
-+.+. ++.+.=..++++.|+ +|+||+
T Consensus 133 ~a~~a-~~~~~~~i~si~iy~g~~g~~~~ 160 (389)
T COG1748 133 LAAYA-AKELFDEIESIDIYVGGLGEHGD 160 (389)
T ss_pred HHHHH-HHHhhccccEEEEEEecCCCCCC
Confidence 33444 444443556665554 558883
No 147
>PLN02686 cinnamoyl-CoA reductase
Probab=97.56 E-value=0.00047 Score=66.26 Aligned_cols=120 Identities=12% Similarity=0.128 Sum_probs=73.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcc---c-CCceEEEEe----cCCCHHHHh
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---D-TNAVVRGFL----GQQQLEDAL 112 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~---~-~~~~v~~~~----~t~d~~~al 112 (305)
...+.++|.|+||+|++|++++..|+..|+ +|+++..+... ....++... . ....+..+. ...++.+++
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 445567999999999999999999999998 88776554311 111122110 0 001222211 112355678
Q ss_pred CCCCEEEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~--~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~t 163 (305)
+++|.||.+++.....+. ....+...|+...+++++.+.+. +.+-+|+..|
T Consensus 127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS 180 (367)
T PLN02686 127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS 180 (367)
T ss_pred HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence 899999998875322221 12345567899999999998876 3444444333
No 148
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.56 E-value=0.00064 Score=62.84 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=68.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chh-hhhhhcccCCceEEEEec----CCCHHHHhC--CCCEEE
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTNAVVRGFLG----QQQLEDALT--GMDIVI 119 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~-~~DL~~~~~~~~v~~~~~----t~d~~~al~--~aDiVI 119 (305)
||.|+||+|++|..++..|.+.+. +|+++|.... ... ..++.+. ..+..+.. ..+++++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999999888 8888886431 111 1111111 01222111 122334443 699999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
.++|..... .....+.+..|+.....+++.+.+.+...++.
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 118 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIF 118 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEE
Confidence 999864321 12334566789999999999888776554443
No 149
>PLN02253 xanthoxin dehydrogenase
Probab=97.56 E-value=0.003 Score=57.68 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------ 112 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al------ 112 (305)
+.+++.|+||+|.+|..++..|+..|. +|+++|.+.. .....++.. ..++..+. .-+| .++++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998 9999998652 111222221 11222111 1112 22223
Q ss_pred -CCCCEEEEcCCCCCCC-C----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932 113 -TGMDIVIIPAGVPRKP-G----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (305)
Q Consensus 113 -~~aDiVIi~ag~~~~~-g----~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN 164 (305)
...|++|.++|..... + .+ -...+..|+.....+.+.+.+. ...+.+++++.
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS 155 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCS 155 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 3689999999864321 1 11 2334566755444444433322 12355555543
No 150
>PRK05865 hypothetical protein; Provisional
Probab=97.55 E-value=0.0004 Score=73.56 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=70.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
|||.|+||+|++|++++..|+..|+ +|+++|.+.... +.. . ...+.. .....++.++++++|+||.+|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999999998 999999754110 000 0 011111 111124556789999999999753
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv 166 (305)
.. ....|+.....+++.+.+.+.. .++.+|.+.
T Consensus 73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 21 3467888889999998877644 455556553
No 151
>PRK08643 acetoin reductase; Validated
Probab=97.52 E-value=0.0045 Score=55.57 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=65.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~ 113 (305)
+++.|+||+|.+|..++..|++.|. +|+++|.+.. .....++.+.. ..+..+.. -++ +.+. +.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999997 8999998652 22222333211 12221110 112 1122 24
Q ss_pred CCCEEEEcCCCCCC-CC--Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 021932 114 GMDIVIIPAGVPRK-PG--MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 114 ~aDiVIi~ag~~~~-~g--~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNP 165 (305)
+.|++|.++|.... +- .+ -...+..|+.. .+.+.+.+.+..+++.++++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 68999999986422 11 11 12334556544 34444444444445666666643
No 152
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.51 E-value=0.00083 Score=60.35 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHHh-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDAL------- 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~al------- 112 (305)
.+++.|+||+|.+|..++..|++.|. +|++++.++. .....++.+. ..++..+.. -+|. ++++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999998 8999998762 2222333332 122322211 1221 1222
Q ss_pred CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
...|+||.++|..... . +...+.+..|+.. .+.+.+.+.+..+.+.++++|
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 3489999999864211 1 1123345556665 666666663333334455554
No 153
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.51 E-value=0.00074 Score=61.77 Aligned_cols=95 Identities=15% Similarity=0.261 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
|||++||. |.+|..++..|+..++ ..+|+++ |+++.+ ...+... .+.. ..+..++++++|+||++..
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~---~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKT---AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEE---eCChHHHHhcCCEEEEEEC
Confidence 68999998 9999999999998875 4578888 765422 1222221 1222 1345677899999999861
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN 167 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd 167 (305)
| +.++++.+.+.... |+.+++..++...
T Consensus 71 -~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 71 -P---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred -c---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 2 22444445555443 5666665555554
No 154
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.48 E-value=0.00073 Score=66.75 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=47.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|||+||||+|.+|..++..|...|+ +|.++|+++... .++.... . +.. +++.++++.++|+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~-g--v~~---~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL-G--VEY---ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc-C--Cee---ccCHHHHhccCCEEEEec
Confidence 5899998559999999999999887 899999875221 1111111 1 121 245678899999999986
No 155
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.48 E-value=0.00072 Score=62.88 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.+||+|||. |.+|..++..|+..|+ +|.++|+++... ..+.... +.. ..+++++++++|+||++..
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 468999998 9999999999999888 899999875221 1111111 111 2356788899999999863
No 156
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.47 E-value=0.0025 Score=56.38 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecC-CC---HHHHh-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL------- 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al------- 112 (305)
.++|.|+||+|.+|..++..|+..|. +|+++++++. .....++... ..+..+... ++ +.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 8999998752 1122233221 122221111 12 22222
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 021932 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP 165 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tNP 165 (305)
...|+||.++|..... ..+. .+.+..|+.....+.+.+.+. ...+.++++|..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 3789999998754321 1122 234555655554544444332 233556666543
No 157
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.46 E-value=0.00092 Score=62.58 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=60.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
|||+|||. |.+|..++..|...++ +|.++|+++.. +..+.... ........++.+.++++|+||++...
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g----~~~~~s~~~~~~~~~~~dvIi~~vp~-- 69 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDR----TTGVANLRELSQRLSAPRVVWVMVPH-- 69 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcC----CcccCCHHHHHhhcCCCCEEEEEcCc--
Confidence 58999998 9999999999999998 99999987622 12222211 01111111333456789999998521
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932 127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV 166 (305)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv 166 (305)
..++++++.+.... ++.+++..+|..
T Consensus 70 --------------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 --------------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred --------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 13455555665554 667787777654
No 158
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.46 E-value=0.00074 Score=65.33 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
..+||+|||+.|.+|..++..|...|+ +|.++|++.. ++.++++++||+||++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence 346999999559999999999999998 8999997420 12457789999999996
No 159
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.44 E-value=0.00031 Score=57.81 Aligned_cols=102 Identities=21% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
..+||+|||+ |.||.+++..|...|+ +|.-+-... ...+..+.+.. ..... .++++.++++|++|++..
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavp- 77 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVP- 77 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEec-
Confidence 4569999999 9999999999999998 666654322 11222222221 11121 134578899999999962
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHh--C-CCcEEEEec--CCCCccHHH
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--C-PKAIVNLIS--NPVNSTVPI 172 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~--~-p~aiviv~t--NPvd~lt~~ 172 (305)
+ ..+.+++++|.++ - |+.+|+=.| -+++++.++
T Consensus 78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 1 1367788888877 2 454544443 667777664
No 160
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.44 E-value=0.001 Score=63.98 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=46.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+||+|||. |.+|.+++..|...|+ ++.++|.+........-..... ... .++++++++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence 37999998 9999999999999998 7788888752211110000000 010 1245678899999999986
No 161
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.44 E-value=0.0046 Score=55.57 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+++.|+||+|.+|..++..|+.+|. +|+++++++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446999999999999999999999998 899999865
No 162
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.44 E-value=0.0011 Score=59.22 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=64.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh-------C
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------~ 113 (305)
++|.|+|++|.+|..++..|+..|. +|++++++.. .....++... ..++..+. .-.| ..+++ .
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999998 9999998762 2222333221 11222211 1112 22222 3
Q ss_pred CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
+.|+||.++|...... .+ -.+.+..|+.. .+.+.+.+.+..... ++++|
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~is 139 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGR-IINMA 139 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeE-EEEEc
Confidence 6899999998642211 11 12234445544 666666666555443 44444
No 163
>PRK12320 hypothetical protein; Provisional
Probab=97.44 E-value=0.0012 Score=68.60 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=63.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
|||.|+||+|++|++++..|+..|+ +|..+|..... ..+.. ...++.-.....+.++++++|+||.+++...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 5899999999999999999999998 99999975411 11100 0111110001124566789999999997531
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCP 155 (305)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p 155 (305)
. +....|+....++++.+++.+.
T Consensus 73 --~----~~~~vNv~Gt~nLleAA~~~Gv 95 (699)
T PRK12320 73 --S----APGGVGITGLAHVANAAARAGA 95 (699)
T ss_pred --c----chhhHHHHHHHHHHHHHHHcCC
Confidence 1 1124688889999999888764
No 164
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.43 E-value=0.0015 Score=61.18 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=71.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh-h----hhc-----ccCC-ceEEEEecC----------C
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D----ISH-----MDTN-AVVRGFLGQ----------Q 106 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~-D----L~~-----~~~~-~~v~~~~~t----------~ 106 (305)
+|.|+||+|++|++++..|+..+...+|+++.+......+. . +.. .... .++..+.+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48899999999999999999888544899998765211111 1 110 0000 234433221 1
Q ss_pred CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161 (305)
Q Consensus 107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv 161 (305)
++.+..+++|+||.+++.... .....++...|+.....+++...+...+.++.+
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~i 134 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKPLHYV 134 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEE
Confidence 244556889999999875421 223445667899999999998887765544433
No 165
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.00089 Score=60.42 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEE-EecCCCHHHHh--------CCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDAL--------TGM 115 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~~al--------~~a 115 (305)
+++.|+||+|.+|..++..|++.|. +|+++|++... ....++.... ..-+.. +....+.++.+ ...
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGN-AWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-eEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999997 89999986521 1111111100 000111 11111222222 346
Q ss_pred CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecC
Q 021932 116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK---CCPKAIVNLISN 164 (305)
Q Consensus 116 DiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~---~~p~aiviv~tN 164 (305)
|+||.++|...... .+ -...+..|+.....+.+.+.+ ..+.+.+++++.
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 136 (260)
T PRK08267 79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSS 136 (260)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 99999998753221 11 234566677655555555432 233455555554
No 166
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.43 E-value=0.0075 Score=54.24 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=66.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------hC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~ 113 (305)
++|.|+||+|.+|..++..|++.|. +|+++|.+.. .....++.......++..+.. .++. ..+ +.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 9999998652 222222322110112222111 1221 112 24
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 021932 114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNP 165 (305)
..|+||.++|.+... ..+. ...+..|+.. .+.+.+.+.+..+++.++.++..
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~ 142 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK 142 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 679999999865321 1122 2234455543 45566666555545566666553
No 167
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.42 E-value=0.0011 Score=59.88 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec--C---CCHHHHh-CCCCEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--Q---QQLEDAL-TGMDIV 118 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~--t---~d~~~al-~~aDiV 118 (305)
+++||.|+||+|++|..++..|+..|+ +|+++.++....... +.. ...+..+.+ + .++.+++ .++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc---CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 356999999999999999999999888 888776654211110 111 011211110 1 1344566 689999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN 164 (305)
|.++|.....+. .+.+..|......+++.+.+....-+|.+.|.
T Consensus 90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 998875422111 11123455556777888777665545554443
No 168
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.42 E-value=0.00067 Score=63.04 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=46.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
||+|||. |.+|+.++..|+..|+ +|.++|+++.. ...+.... ... ..+.++++++||+||++..
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAG----AVT---AETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCC----Ccc---cCCHHHHHhcCCEEEEecC
Confidence 5999998 9999999999999998 99999987521 11122211 111 2345688999999999863
No 169
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.39 E-value=0.0037 Score=57.66 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe----cCCCHHHH-----
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDA----- 111 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~----~t~d~~~a----- 111 (305)
..+.+.+.|+|||+-+|..+|..|+.+|+ .|+|+.+++ +...+.+|++.. ...+..+. ..++.+..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence 34556999999999999999999999999 999999987 566667777643 22222211 11122111
Q ss_pred --hCCCCEEEEcCCCCCCCC------CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 112 --LTGMDIVIIPAGVPRKPG------MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 112 --l~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
.-..|+.|.+||...-.. .+-.+++.-|+-. .+.+.+.+.+.. .+-||+++
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~ 142 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIG 142 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 126899999999753221 2235567777654 455555666544 34555554
No 170
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.38 E-value=0.003 Score=56.36 Aligned_cols=115 Identities=18% Similarity=0.052 Sum_probs=66.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh----CCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----TGMD 116 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----~~aD 116 (305)
++|.|+||+|.+|..++..|++.|. +|+++|+++. .....++.... ..++..+.. -+| .++.+ +..|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 5899999999999999999999998 8999998762 22222332211 123332211 112 22222 2459
Q ss_pred EEEEcCCCCCC---CCCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932 117 IVIIPAGVPRK---PGMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (305)
Q Consensus 117 iVIi~ag~~~~---~g~~r~---d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN 164 (305)
++|.++|.... ...+.. +.+..|+.....+.+.+.++ ...+.++++|-
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 135 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS 135 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 99999885321 122222 34566766655565555443 22355555553
No 171
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.37 E-value=0.0036 Score=58.17 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.....++|.|+||+|.+|..++..|+.+|. +|+++|++.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~ 74 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE 74 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 333446899999999999999999999998 999999875
No 172
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.37 E-value=0.00076 Score=56.15 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=72.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh-----hhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-----DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~-----DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
|+|+|+ |.+|..+|..|.+.+. +|.+++..+ ....+ .+.+......+.......+..+..+.+|+||+|.-
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789999 9999999999999888 999999865 11111 11111101112211111222246799999999852
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE-eee
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM 193 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG-~t~ 193 (305)
. .-.++.++.++.+. |++.++.+-|=++..- .+.+. +|+.+|++ ++.
T Consensus 77 a----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~ 125 (151)
T PF02558_consen 77 A----------------YQLEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT 125 (151)
T ss_dssp G----------------GGHHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred c----------------cchHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence 1 11345666777776 6778888888877653 23332 56678874 444
No 173
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.37 E-value=0.0015 Score=58.33 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------ 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------ 112 (305)
.+++.|+||+|++|..++..|+..|. +|++++++.. .....++.... .++..+.. -++ .++.+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999998 8888887541 11122232211 12221111 112 21222
Q ss_pred -CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932 113 -TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (305)
Q Consensus 113 -~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t 163 (305)
.+.|+||.++|.......+..+.+..|......+++.+.++. ..+.++++|
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 368999999875422222223345567776777777777654 234455554
No 174
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.36 E-value=0.0019 Score=56.85 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.++|.|+||+|.+|..++..|+++|. +|+++|++.
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~ 41 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA 41 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence 345899999999999999999999998 899999875
No 175
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.35 E-value=0.0021 Score=57.93 Aligned_cols=99 Identities=10% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.+||+|||+ |.+|..++..++..+. ..++++++.... ....++.+.. .+.. +.|+++.++++|+||++..
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiavp 75 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAMP 75 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEecC
Confidence 469999998 9999999998887753 345777776321 1122222211 1222 2356788899999999852
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~ 168 (305)
+ ...+++++++..+-++.+|+.++.-++.
T Consensus 76 ----~------------~~~~~v~~~l~~~~~~~~vis~~~gi~~ 104 (245)
T PRK07634 76 ----P------------SAHEELLAELSPLLSNQLVVTVAAGIGP 104 (245)
T ss_pred ----H------------HHHHHHHHHHHhhccCCEEEEECCCCCH
Confidence 1 1234444445443334466656555543
No 176
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.33 E-value=0.0063 Score=54.03 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CC---CHHHHh-----
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQ---QLEDAL----- 112 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~---d~~~al----- 112 (305)
+.++|.|+||+|.+|+.++..|+..|. ++++++.+.. .....++... ..++..+.. -+ ++++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999998 7887765431 1112223221 122222211 11 222333
Q ss_pred --CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932 113 --TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (305)
Q Consensus 113 --~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN 164 (305)
.+.|++|.++|...... +.....+..|+.....+.+.+.+.. +.+.++++|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 36899999998642111 1122345667665555555554432 4456666653
No 177
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.33 E-value=0.002 Score=59.62 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.|||++||+ |.+|.+++..|+..+. ..+|.++|++.. ....++.... .++.. .+..+++++||+||++.-
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~~---~~~~e~~~~aDvVilav~ 74 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKGT---HNKKELLTDANILFLAMK 74 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceEe---CCHHHHHhcCCEEEEEeC
Confidence 369999998 9999999999998872 248899987531 1122232211 12221 345677899999999862
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN 167 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd 167 (305)
+ ..+.++++.+... .++.+|+.+.+-++
T Consensus 75 ----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 75 ----P------------KDVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 1123333455444 35667776655554
No 178
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.33 E-value=0.005 Score=55.38 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEE-EecCCCHHHH-------hCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGM 115 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~~a-------l~~a 115 (305)
.+++.|+|++|.+|..++..|+.+|. +|+++|.+... ....++... ...+.. .....+.+++ +...
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA--AIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc--eEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 34799999999999999999999998 99999987621 111222111 001111 0011122222 2468
Q ss_pred CEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 021932 116 DIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN 164 (305)
Q Consensus 116 DiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~tN 164 (305)
|++|.++|...... +.-.+.+..|+.....+.+.+.++ .+.+.+++++.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99999998642111 112334566766666666555433 33456666654
No 179
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.33 E-value=0.0036 Score=61.26 Aligned_cols=102 Identities=24% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCc-eEEE-EecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA-VVRG-FLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~-~v~~-~~~t~d~~~al~~aDiVIi~a 122 (305)
+.++|.|+||+|.+|..++..|++.|. +++++|.++... ..++.+..... .+.. .....+..+.+.+.|++|+++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 456899999999999999999999998 899999865211 11111111011 1111 111122345578899999999
Q ss_pred CCCCCCCCch---hhHHHhhHHHHHHHHHH
Q 021932 123 GVPRKPGMTR---DDLFNINAGIVKTLCEG 149 (305)
Q Consensus 123 g~~~~~g~~r---~d~~~~N~~i~~~i~~~ 149 (305)
|.......+. .+.++.|......+.+.
T Consensus 254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a 283 (406)
T PRK07424 254 GINVHGERTPEAINKSYEVNTFSAWRLMEL 283 (406)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8653322222 33456666544444444
No 180
>PLN02256 arogenate dehydrogenase
Probab=97.33 E-value=0.0019 Score=60.83 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh-CCCCEEEE
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVII 120 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi 120 (305)
+..+.+||+|||. |.+|..++..|...|. +|..+|.+.....+.++ . +..+ ++.++.+ .++|+||+
T Consensus 32 ~~~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~~---~~~~e~~~~~aDvVil 98 (304)
T PLN02256 32 EKSRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSFF---RDPDDFCEEHPDVVLL 98 (304)
T ss_pred ccCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Ceee---CCHHHHhhCCCCEEEE
Confidence 4456679999998 9999999999988886 89999987521111111 1 1111 3555555 47999999
Q ss_pred cC
Q 021932 121 PA 122 (305)
Q Consensus 121 ~a 122 (305)
+.
T Consensus 99 av 100 (304)
T PLN02256 99 CT 100 (304)
T ss_pred ec
Confidence 86
No 181
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.31 E-value=0.0059 Score=54.48 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC---HH-------HHhC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LE-------DALT 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d---~~-------~al~ 113 (305)
+.++|.|+||+|.+|..++..|+..|. +|+++++++.......+.... .++..+.. -++ .+ +.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999998 899999765322222222211 11221111 112 11 1224
Q ss_pred CCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~----~~~p~aiviv~tN 164 (305)
..|++|.++|...... ..-.+.+..|+.....+.+.+. +....+.+++++.
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999998643211 1123345667554444444443 3332455655553
No 182
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.30 E-value=0.00097 Score=61.41 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=62.0
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCCCCC-
Q 021932 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGVPRK- 127 (305)
Q Consensus 51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~~~~- 127 (305)
|+||+|++|++++..|+..++ +++++.... ..|+.+. .++.+.++ +.|+||.+|+....
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence 899999999999999988887 555443211 1233321 12334444 57999999975321
Q ss_pred --CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932 128 --PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161 (305)
Q Consensus 128 --~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv 161 (305)
......+.+..|......+++.+++.+..-+|..
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~ 99 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFL 99 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEe
Confidence 1123456778899999999999998875444443
No 183
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.29 E-value=0.002 Score=56.10 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhh---hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~---~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
|||+||||+|.+|+.++...+.+|+ |+..+=+++.+-.+ .-+.+.+ + +. .+.+.+++.+-|+||-+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D----i--fd-~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD----I--FD-LTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc----c--cC-hhhhHhhhcCCceEEEecc
Confidence 6999999999999999999999999 99999887621111 1011111 1 11 1234578999999999876
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN 164 (305)
.+. ++. ..+ -.+-...+...++... ...++|+.-
T Consensus 72 ~~~-~~~--~~~---~~k~~~~li~~l~~ag-v~RllVVGG 105 (211)
T COG2910 72 AGA-SDN--DEL---HSKSIEALIEALKGAG-VPRLLVVGG 105 (211)
T ss_pred CCC-CCh--hHH---HHHHHHHHHHHHhhcC-CeeEEEEcC
Confidence 542 121 111 2233555556666544 344555643
No 184
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.28 E-value=0.0015 Score=60.90 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=49.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+||++||- |.+|+.+|..|+..|+ ++..+|+++.+. +..+.... ... ..+..++.+++|+||.+..
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~G----a~~---a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAG----ATV---AASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcC----Ccc---cCCHHHHHHhCCEEEEecC
Confidence 48999998 9999999999999999 999999976432 22233211 111 1235689999999999864
No 185
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.0044 Score=55.30 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+++.|+||+|.+|+.++..|++.|. +|++++.+.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 445899999999999999999999987 899999865
No 186
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.27 E-value=0.0018 Score=61.91 Aligned_cols=99 Identities=24% Similarity=0.282 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
+...++|.|+||+|++|+.++..|....-+.+|+++++++. ...+.++.+. .+ .++++++.++|+||.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~ 221 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVW 221 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEE
Confidence 34557999999999999999999975432458999998652 2222222211 11 246789999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 169 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l 169 (305)
+++.+...-.+..++ .+..+++=++-|=|+-
T Consensus 222 ~ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 222 VASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred CCcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence 988764211111111 3567888889998875
No 187
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.27 E-value=0.0018 Score=60.55 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=47.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+||+|||. |.+|..++..|+..|+ +|.++|+++.. ..++.... ... ..++.++++++|+||++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence 48999998 9999999999999998 99999987522 12222211 111 235668899999999985
No 188
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.26 E-value=0.00041 Score=64.51 Aligned_cols=91 Identities=22% Similarity=0.273 Sum_probs=57.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
|||.|+|++|++|+.+...|...++ +++.++..+ .|+.+... + ..+-+. .+.|+||.||+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~~---~------~~~~~~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPEA---V------AKLLEA-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHHH---H------HHHHHH-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHHH---H------HHHHHH-hCCCeEeccceeec
Confidence 7999999999999999999988887 888887653 34443221 0 011122 25899999997642
Q ss_pred CC--CCchhhHHHhhHHHHHHHHHHHHHhC
Q 021932 127 KP--GMTRDDLFNINAGIVKTLCEGIAKCC 154 (305)
Q Consensus 127 ~~--g~~r~d~~~~N~~i~~~i~~~I~~~~ 154 (305)
.. ..........|+.....+++.+.+.+
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~ 93 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERG 93 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcC
Confidence 11 12345566789999999999998765
No 189
>PLN02996 fatty acyl-CoA reductase
Probab=97.26 E-value=0.0048 Score=61.87 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCC--chh---hhhhhccc----------------CCceEEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGV---TADISHMD----------------TNAVVRGF 102 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~--~g~---~~DL~~~~----------------~~~~v~~~ 102 (305)
+.+.|.|+||+|++|+.++..|+.. +-+.+|+++.+... ... ..++.+.. ...++..+
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 4458999999999999999887764 44568888877541 111 01111110 01334443
Q ss_pred ecCC----------C-HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932 103 LGQQ----------Q-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (305)
Q Consensus 103 ~~t~----------d-~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t 163 (305)
.+.- + +++.++++|+||.+|+... ......+....|+....++++...+.. .+.++.+.|
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST 161 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 3221 1 3456689999999997643 223455677889999999999888753 444555444
No 190
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.26 E-value=0.0068 Score=54.45 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------h
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------L 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l 112 (305)
.++|.|+||+|.+|..++..|+..|. +|+++|+++. .....++.+. ..++..+.. -+| .++. +
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999998 8999998762 2222223221 112222111 112 2222 2
Q ss_pred CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tN 164 (305)
...|++|.++|..... ..+ -.+.+..|+.....+.+.+.++. ..+.++++|.
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 4579999999864211 111 23345567665555555555442 2345666554
No 191
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.26 E-value=0.0025 Score=59.02 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
.+||++||+ |.+|.+++..|++.++ ..+|+.+|+++. ....+.+.. . +... ++..+.+++||+||++.
T Consensus 2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITIT---TNNNEVANSADILILSI 71 (272)
T ss_pred CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEe
Confidence 358999998 9999999999998875 457999998652 122222211 1 2221 24457789999999986
No 192
>PRK06182 short chain dehydrogenase; Validated
Probab=97.24 E-value=0.0037 Score=56.95 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhC-------CCCE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT-------GMDI 117 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~-------~aDi 117 (305)
.++|.|+|++|.+|..++..|+..|. +|++.++++... .++.... ...+.. +....++++.++ +.|+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLG-VHPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCC-CeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 35899999999999999999999998 899998865211 1121111 011111 111112223333 7899
Q ss_pred EEEcCCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 118 VIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 118 VIi~ag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
+|.++|..... . +.....+..|... ++.+.+.+++.... .+++++
T Consensus 78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~is 132 (273)
T PRK06182 78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINIS 132 (273)
T ss_pred EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 99999864221 1 1123345556543 56666677665543 444444
No 193
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.24 E-value=0.0019 Score=64.31 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC--CceEEEEecCCCHHHHhC---CCCEEEEc
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALT---GMDIVIIP 121 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~---~aDiVIi~ 121 (305)
.+|+|||. |.+|+++|..|+.+|+ +|.++|+++.. +.++..... ...+.. ..++++.++ ++|+||++
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence 48999998 9999999999999999 99999997622 122222100 111222 346666665 58988887
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP 165 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP 165 (305)
.- +-+.++++++.+..+- |+.+||..+|=
T Consensus 74 v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 74 IK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred eC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 42 2244555556665554 67788887763
No 194
>PRK07985 oxidoreductase; Provisional
Probab=97.24 E-value=0.0051 Score=57.10 Aligned_cols=115 Identities=19% Similarity=0.118 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--ch-hhhhhhcccCCceEEEEe-cCCCH----------HHHh
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTNAVVRGFL-GQQQL----------EDAL 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g-~~~DL~~~~~~~~v~~~~-~t~d~----------~~al 112 (305)
+++.|+||+|.+|..++..|+..|. +|++.+.+.. .. ...++.... ...+..+. .-+|. .+.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999998 8888876431 11 111111111 11222111 11221 1223
Q ss_pred CCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN 164 (305)
...|++|.++|.... + ..+. .+.+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS 186 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS 186 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence 467999999985321 1 1122 3345667765555555554432 3456666654
No 195
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.24 E-value=0.002 Score=59.51 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=44.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|||+|||. |.+|..++..|...|+..+|+.+|+++.. ..++..... ... ..++.+ +.++|+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence 48999998 99999999999988875588999986521 111111110 111 124445 45699999986
No 196
>PLN02712 arogenate dehydrogenase
Probab=97.24 E-value=0.0024 Score=66.27 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh-CCCCEEEE
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVII 120 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi 120 (305)
++.+++||+|||. |.+|..++..|...|+ +|..+|.+.....+.++ . +..+ +++++.+ +++|+||+
T Consensus 48 ~~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~~---~d~~e~~~~~aDvViL 114 (667)
T PLN02712 48 DNTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSFF---LDPHDLCERHPDVILL 114 (667)
T ss_pred ccCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEEe---CCHHHHhhcCCCEEEE
Confidence 5666789999998 9999999999998887 89999986421111111 1 1211 3455544 57999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHH-Hh-CCCcEEEEec
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIA-KC-CPKAIVNLIS 163 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~-~~-~p~aiviv~t 163 (305)
+.. ...+.++++.+. .+ .|+++|+-++
T Consensus 115 avP----------------~~~~~~vl~~l~~~~l~~g~iVvDv~ 143 (667)
T PLN02712 115 CTS----------------IISTENVLKSLPLQRLKRNTLFVDVL 143 (667)
T ss_pred cCC----------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence 852 123444444443 22 3567776664
No 197
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.24 E-value=0.021 Score=54.08 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=46.2
Q ss_pred CEEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEe
Q 021932 47 FKVAVLGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL 103 (305)
Q Consensus 47 ~KI~IIGaaG~--------------------VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~ 103 (305)
|||+|-|| |+ =|+.+|..|+..|+ +|.++|++.. ......+.+.. ...
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence 57888887 64 37899999999999 9999998752 12223344322 111
Q ss_pred cCCCHHHHhCCCCEEEEcCC
Q 021932 104 GQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 104 ~t~d~~~al~~aDiVIi~ag 123 (305)
..+..++.+++|+||++..
T Consensus 72 -AaS~aEAAa~ADVVIL~LP 90 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTP 90 (341)
T ss_pred -cCCHHHHHhCCCEEEEecC
Confidence 2346789999999999853
No 198
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.24 E-value=0.0087 Score=53.03 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHH-------H
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LED-------A 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------a 111 (305)
+.+++.|+||+|.+|..++..|+++|. .|.+.+.+. +.....++. ..+..+. .-++ +++ .
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999987 788887754 111111111 1111111 0112 111 1
Q ss_pred hCCCCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 021932 112 LTGMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP 165 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNP 165 (305)
+...|+||.++|..... . .+-.+.+..|+.....+++.+.+. .+.+.+++++..
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 140 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV 140 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence 34689999999864321 1 112334566666555555544322 234556666543
No 199
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.23 E-value=0.0057 Score=55.09 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCHHHHh--------
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQLEDAL-------- 112 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~~~al-------- 112 (305)
.+.++|.|+||+|.+|+.++..|+..|. +|+++|.+.. .....++... ..++..+.. -+|. +.+
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~-~~i~~~~~~~~ 84 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADE-ADIERLAEETL 84 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCH-HHHHHHHHHHH
Confidence 3446899999999999999999999998 8999998642 1111222211 112222111 1222 222
Q ss_pred ---CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 021932 113 ---TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN 164 (305)
Q Consensus 113 ---~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~tN 164 (305)
...|+||.++|...... ....+.+..|+.....+.+.+.++ .+.+.++++|.
T Consensus 85 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 85 ERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46899999998632111 112345667877777777766554 23445655554
No 200
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.014 Score=53.29 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+++.|+||+|.+|..++..|++.|. +|++++++.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTA 40 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeccc
Confidence 345899999999999999999999997 999999864
No 201
>PRK05717 oxidoreductase; Validated
Probab=97.23 E-value=0.0044 Score=55.76 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH---HHH-------hCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTG 114 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~~ 114 (305)
.++|.|+||+|.+|.+++..|+..|. +|+++|+++.... ++.+.. ...+..+.. -++. +++ +..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~--~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGS--KVAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHH--HHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999987 9999998652111 111100 011111110 1121 111 235
Q ss_pred CCEEEEcCCCCCCCC-----Cc---hhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecC
Q 021932 115 MDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISN 164 (305)
Q Consensus 115 aDiVIi~ag~~~~~g-----~~---r~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tN 164 (305)
.|++|.++|...... .+ -.+.+..|+.....+.+.+.++ ...+.++++|.
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS 144 (255)
T PRK05717 85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLAS 144 (255)
T ss_pred CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 799999998653211 11 2345677877777777776543 22355666653
No 202
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.22 E-value=0.0033 Score=58.26 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=63.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
+||+|||+ |.+|..++..|...+. ..+|+++|.+... ....+... ...+.. +.+..+.++++|+||++..
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp- 73 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP- 73 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC-
Confidence 58999998 9999999999988772 2489999875411 11222211 111222 2355677899999999863
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~ 168 (305)
...++++++.+..+- ++..|+.+.|-++.
T Consensus 74 ---------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 74 ---------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 123556666666544 45667666776654
No 203
>PRK07069 short chain dehydrogenase; Validated
Probab=97.22 E-value=0.0068 Score=53.99 Aligned_cols=114 Identities=22% Similarity=0.276 Sum_probs=66.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--CchhhhhhhcccCCceEEEEe-cCCCH---H-------HHhC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTNAVVRGFL-GQQQL---E-------DALT 113 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~-~--~~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~al~ 113 (305)
||.|+||+|.+|..++..|+..|. +|+++|++ . +.....++........+..+. .-+|. + +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999997 89999986 3 122222232211001111110 11121 1 2235
Q ss_pred CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
..|++|.++|...... .+ ....+..|+. ..+.+.+.+.+.... .++++|.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~ss 138 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNISS 138 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEecC
Confidence 6899999998643211 11 2334556766 777788888766544 4444543
No 204
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.014 Score=52.95 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHhC------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------ 113 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~------ 113 (305)
.++|.|+||+|.+|..++..|+..|. +|++++.+. ......++.......++..+.. -.| .++.++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999998 899999865 2222222321110112222211 112 222222
Q ss_pred -CCCEEEEcCCCCCCCC----Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932 114 -GMDIVIIPAGVPRKPG----MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (305)
Q Consensus 114 -~aDiVIi~ag~~~~~g----~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN 164 (305)
..|++|.++|.....+ .+. .+.+..|......+.+.+.+. ...+.++++|.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS 146 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS 146 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 6899999998532211 121 233455666555555544333 22345555543
No 205
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.20 E-value=0.004 Score=55.08 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~ 81 (305)
+..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+
T Consensus 20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 3458999999 9999999999999997 489999998
No 206
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.20 E-value=0.0041 Score=55.39 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecC-CC---HHHHh-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL------- 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al------- 112 (305)
.++|.|+||+|++|+.++..|+..|. +|+++|.+.. .....++.... .++..+... .| .++.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999998 8999998752 22222333211 122221111 12 22222
Q ss_pred CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHH
Q 021932 113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIA 151 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~ 151 (305)
...|++|.++|...... .+. ...+..|+.....+.+.+.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 123 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVL 123 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35899999998532211 112 2345667666665555544
No 207
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.005 Score=56.15 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=30.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+.|+||+|.+|..++..|+.+|. +|++++++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 37 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP 37 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 4689999999999999999999998 899998765
No 208
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.20 E-value=0.0021 Score=61.20 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
..++|+|||. |.+|+.+|..|...|. +|+.+|++... ..+. +.. ..++++++++||+|+++...
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~--~~~~--------~~~---~~~l~ell~~aDiVil~lP~ 208 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNK--DLDF--------LTY---KDSVKEAIKDADIISLHVPA 208 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhH--hhhh--------hhc---cCCHHHHHhcCCEEEEeCCC
Confidence 4458999999 9999999999988887 99999986421 0000 111 23577899999999998632
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN 164 (305)
. + .+..++. .+.+....|++++|+++-
T Consensus 209 t--~---------~t~~li~--~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 209 N--K---------ESYHLFD--KAMFDHVKKGAILVNAAR 235 (330)
T ss_pred c--H---------HHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence 1 1 1112221 122333347889998873
No 209
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.0077 Score=53.97 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---H-------H
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------D 110 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~ 110 (305)
.+.++|.|+||+|.+|..++..|+.+|. +|+++|+++. .....++.... .++..+. .-+|. + +
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999998 9999998762 22222332211 1122111 11121 1 1
Q ss_pred HhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932 111 ALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN 164 (305)
Q Consensus 111 al~~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN 164 (305)
.+...|+||.++|.... + ..+. .+.+..|+.....+.+.+.++- ..+.++++|.
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 22468999999986422 1 1122 3345566665566666655431 1235555553
No 210
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.18 E-value=0.015 Score=53.21 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------CC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG 114 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------~~ 114 (305)
.++|.|+||+|.+|..++..|+..|. +|++++++.... .++.... ..++..+. .-+| ..+.+ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999998 899999865211 1121111 11121111 0112 11222 35
Q ss_pred CCEEEEcCCCCCC---CCCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932 115 MDIVIIPAGVPRK---PGMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS 163 (305)
Q Consensus 115 aDiVIi~ag~~~~---~g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t 163 (305)
.|+||.++|.... ...+. .+.+..|+.....+.+.+.++ ...+.++++|
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iS 136 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNIT 136 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 8999999986421 11122 234667776666666654332 1234455555
No 211
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.17 E-value=0.002 Score=59.98 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+..||+|+|+ |.+|.++++.|...|. .+|.++|++. +++.+.++.+.. +..... ...+.++.++++|+||.+.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~-~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARAT-AGSDLAAALAAADGLVHAT 200 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEE-eccchHhhhCCCCEEEECC
Confidence 3469999999 9999999999998885 5899999976 344444554432 222221 1234456789999999984
No 212
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0061 Score=56.64 Aligned_cols=117 Identities=22% Similarity=0.117 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEec-CCCH---HHH------
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLG-QQQL---EDA------ 111 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~-t~d~---~~a------ 111 (305)
.+.++|.|+||+|.+|..++..|+..|. +|++++++...+ ...++........+..+.. -.|. ++.
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3446899999999999999999999998 899998865211 1223321111122222211 1122 111
Q ss_pred -hCCCCEEEEcCCCCCCCC----CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 112 -LTGMDIVIIPAGVPRKPG----MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 112 -l~~aDiVIi~ag~~~~~g----~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
+...|++|.+||....+. ..-...+..|... .+.+.+.+.+.. .+.|+++|
T Consensus 92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 151 (306)
T PRK06197 92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVS 151 (306)
T ss_pred hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEEC
Confidence 236899999998632211 1112335556554 666676666543 34555554
No 213
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0089 Score=53.31 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEE-ecCCCHH---H-------Hh
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQLE---D-------AL 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~~---~-------al 112 (305)
.+++.|+||+|.+|..++..|+..|. +|+++|+++. .....++.+.. ..+..+ ..-+|.+ + .+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999987 8999998752 12222222211 111111 1112221 1 22
Q ss_pred CCCCEEEEcCCCCCC----C--CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRK----P--GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~----~--g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~t 163 (305)
...|+||.++|.... + ..+. .+.+..|+.....+.+.+.++. ..+.++++|
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS 144 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 468999999986421 1 1111 2345566665555555555432 234555554
No 214
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.17 E-value=0.00087 Score=60.14 Aligned_cols=157 Identities=17% Similarity=0.253 Sum_probs=93.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------Cchhhh---hhhccc-CCc------eEEEEecCCCHHH
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTA---DISHMD-TNA------VVRGFLGQQQLED 110 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~------~~g~~~---DL~~~~-~~~------~v~~~~~t~d~~~ 110 (305)
.||+|+|. |.+|+..|.+++..|+ +|.|||+.+ +..... +|+... ... .+..+++++++.|
T Consensus 4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 48999997 9999999999999999 999999976 122222 333221 111 1222456788999
Q ss_pred HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC------CC
Q 021932 111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG------TY 183 (305)
Q Consensus 111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s------~~ 183 (305)
..++|=.|=.|+ .+.+...+++.+++.+.. |..|+ .|.....|....+.=+.+.- -.
T Consensus 81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~mpS~~s~gL~~k~q~lvaHPv 144 (313)
T KOG2305|consen 81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTFMPSKFSAGLINKEQCLVAHPV 144 (313)
T ss_pred HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCceEE--eccccccChHHHhhhhhhhhheeEecCC
Confidence 999885555553 335677888888998887 55443 66666666544332221100 00
Q ss_pred CCCcEEEe--------eehhhHHHHHHHHHHhCCCCcceeEEEEccc
Q 021932 184 DPKRLLGV--------TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222 (305)
Q Consensus 184 p~~kviG~--------t~Lds~R~~~~la~~l~v~~~~V~~~vlG~h 222 (305)
+|--+|-+ |.-|+..=.+.|-+.+|-.|-...-.+.|.-
T Consensus 145 NPPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~ 191 (313)
T KOG2305|consen 145 NPPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFA 191 (313)
T ss_pred CCCcccchheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccce
Confidence 11112222 3334432233455777877766666666644
No 215
>PRK09135 pteridine reductase; Provisional
Probab=97.17 E-value=0.0043 Score=55.05 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=61.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al------- 112 (305)
++|.|+||+|++|++++..|+..|. +|+++|... ......++.+.. ...+..+. .-+| ..+++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999998 999999753 122222333221 11122111 1122 22222
Q ss_pred CCCCEEEEcCCCCCC--CC----CchhhHHHhhHHHHHHHHHHHHHh
Q 021932 113 TGMDIVIIPAGVPRK--PG----MTRDDLFNINAGIVKTLCEGIAKC 153 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~--~g----~~r~d~~~~N~~i~~~i~~~I~~~ 153 (305)
.+.|+||.++|.... .. .+..+.+..|+.....+.+.+.++
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~ 130 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ 130 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 357999999985321 11 112445667777666666666543
No 216
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.17 E-value=0.0074 Score=53.95 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEE--ecC-C----------CHH
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--LGQ-Q----------QLE 109 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~--~~t-~----------d~~ 109 (305)
+.++|.|+|++|++|..++..|+..|. +|+++|++. ......++.+.. ..++..+ ..+ . .+.
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence 446899999999999999999999887 999999875 222233444322 1112111 100 0 122
Q ss_pred HHhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecC
Q 021932 110 DALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAK---CCPKAIVNLISN 164 (305)
Q Consensus 110 ~al~~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~I~~---~~p~aiviv~tN 164 (305)
+.+...|+||.++|.... + ..+. ...+..|+.....+.+.+.+ ..+.+.++++|.
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss 152 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS 152 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 334568999999986322 1 1122 23455666654444444332 123445555554
No 217
>PLN00016 RNA-binding protein; Provisional
Probab=97.15 E-value=0.0041 Score=59.83 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=61.4
Q ss_pred CCCCCCEEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh---------hhhcccCCceEEEEec-CCC
Q 021932 42 GGSPGFKVAVL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---------DISHMDTNAVVRGFLG-QQQ 107 (305)
Q Consensus 42 ~~~~~~KI~II----GaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~---------DL~~~~~~~~v~~~~~-t~d 107 (305)
...+++||.|+ ||+|++|+.++..|+..|+ +|++++++......+ ++.. ..++.+.+ -.|
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~l~~----~~v~~v~~D~~d 121 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKEPSQKMKKEPFSRFSELSS----AGVKTVWGDPAD 121 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCcchhhhccCchhhhhHhhh----cCceEEEecHHH
Confidence 33445799999 9999999999999999998 999999875211100 1111 11222221 123
Q ss_pred HHHHh--CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 108 LEDAL--TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 108 ~~~al--~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
+++.+ .++|+||.+++. +....+.+++.+++.+.+-+|.
T Consensus 122 ~~~~~~~~~~d~Vi~~~~~--------------~~~~~~~ll~aa~~~gvkr~V~ 162 (378)
T PLN00016 122 VKSKVAGAGFDVVYDNNGK--------------DLDEVEPVADWAKSPGLKQFLF 162 (378)
T ss_pred HHhhhccCCccEEEeCCCC--------------CHHHHHHHHHHHHHcCCCEEEE
Confidence 33444 579999988642 1234566777777666554443
No 218
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.15 E-value=0.0047 Score=54.86 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------- 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------- 112 (305)
.++|.|+||+|.+|..++..|+.+|. +|++++++.. .....++... ...+..+.. -.| +++.+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999998 8999998741 2222223221 112322211 112 22222
Q ss_pred CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~t 163 (305)
...|+||.++|.... + ..+. .+.+..|+.....+.+.+ .+..+ ..++++|
T Consensus 82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~s 141 (251)
T PRK12826 82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTS 141 (251)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEe
Confidence 368999999976431 1 1222 234556666555555544 44443 3444444
No 219
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0098 Score=52.87 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HHH-------h
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------L 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~a-------l 112 (305)
.++|.|+||+|.+|+.++..|++.|. +|++++.++. .....++.... .++..+. .-+|. ++. +
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999998 8999987652 22223333221 1222211 11221 111 2
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN 164 (305)
.+.|+||.++|..... ..+. ...+..|......+.+.+.++ ...+.++++|.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 5789999999864321 1111 223455666555555554433 12445655554
No 220
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.14 E-value=0.0037 Score=55.24 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|..++..|+++|+ +|.++++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~ 39 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE 39 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 46899999999999999999999998 799999876
No 221
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.0058 Score=54.65 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=30.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+||+|.+|+.++..|+++|. +|+++++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999998 899999865
No 222
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.0046 Score=55.44 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|..++..|+..|. +|+++++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~ 41 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA 41 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 35899999999999999999999887 899999875
No 223
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.12 E-value=0.0039 Score=57.22 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~--~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.|||+|||+ |.+|++++..|...+.. .+++.+|.++.. + .... ..+..+.++++|+||++.
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav- 65 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV- 65 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence 369999998 99999999999987743 358888875421 0 0111 124457788999999984
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
+| ..+.++++++..+-++..++...+-++
T Consensus 66 ---kp------------~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 ---KP------------DLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred ---CH------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 11 334555555554433345555566555
No 224
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.12 E-value=0.0036 Score=60.54 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=43.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.+||+|||.+|.+|..++..|.+. ++ +|+.+|.+ +.. ..+.++.+++||+||++..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilavP 60 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DPG----------SLDPATLLQRADVLIFSAP 60 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeCC
Confidence 358999998899999999999875 44 89999873 110 1245678999999999963
No 225
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.008 Score=53.96 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHh-------C
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDAL-------T 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al-------~ 113 (305)
+.+++.|+||+|.+|..++..|+..|. +|+++|++... ... ...+..+.. ..+.++.+ .
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD----GRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 446899999999999999999999998 89999986521 000 011111100 01222223 3
Q ss_pred CCCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHH----hCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I~~----~~p~aiviv~tN 164 (305)
..|++|.++|...... . .....+..|+.....+.+.+.+ ....+.++++|.
T Consensus 75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 135 (252)
T PRK07856 75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS 135 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 5699999998532111 1 1234456666655555555443 223355666654
No 226
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.0066 Score=55.16 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA------- 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a------- 111 (305)
+.++|.|+||+|.+|..++..|+..|. +|+++|++. ......++.... .++..+. .-++ .++.
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998 899999865 222222332211 1111111 0112 2222
Q ss_pred hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 021932 112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPV 166 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tNPv 166 (305)
+...|++|.++|..... ..+. ...+..|......+.+...+. .+++.|+++|.+.
T Consensus 84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 23579999998753211 1122 233455665555555544432 1346677766543
No 227
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.0073 Score=54.73 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCHH---HH-------h
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE---DA-------L 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~---~a-------l 112 (305)
.+++.|+||+|.+|.+++..|+.+|. +|+++|++.. .....++... ...+..+. .-++.+ ++ +
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999998 9999998752 2222233221 11222211 112221 11 2
Q ss_pred CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~----~~~p~aiviv~tN 164 (305)
...|+||.+||..... ..+ ..+.+..|......+.+... +....+.+++++.
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 3789999999853221 111 23345556555555555443 3344455666654
No 228
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.11 E-value=0.0058 Score=54.13 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----- 112 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----- 112 (305)
+.++|.|+||+|.+|..++..|++.|. +++++ +.+.. .....++... ...+..... -+| +.+.+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998887 78887 87651 1111122221 122222211 112 21222
Q ss_pred --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHH
Q 021932 113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAK 152 (305)
Q Consensus 113 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~ 152 (305)
...|+||.++|..... ..+ -.+.+..|......+.+.+..
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 127 (247)
T PRK05565 80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALP 127 (247)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2789999999864211 111 123455676654445444443
No 229
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.11 E-value=0.0027 Score=52.43 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+.+..||.|+|| |-+|..+++.|...|. .+|.+++++.. .+.+|........+.... ..++.+.+.++|+||.+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~--ra~~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPE--RAEALAEEFGGVNIEAIP-LEDLEEALQEADIVINAT 83 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHH--HHHHHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHH--HHHHHHHHcCccccceee-HHHHHHHHhhCCeEEEec
Confidence 445679999999 9999999999999976 47999998652 222333221122344332 245667889999999987
Q ss_pred CCC
Q 021932 123 GVP 125 (305)
Q Consensus 123 g~~ 125 (305)
+.+
T Consensus 84 ~~~ 86 (135)
T PF01488_consen 84 PSG 86 (135)
T ss_dssp STT
T ss_pred CCC
Confidence 655
No 230
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0056 Score=55.50 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=31.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+||+|.+|..++..|+..|. +|++.+++.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP 38 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 4799999999999999999999997 899999865
No 231
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.10 E-value=0.01 Score=52.42 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hhhhhhhcccCCceEEEEec-CCC---HHHH-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFLG-QQQ---LEDA------- 111 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~~~DL~~~~~~~~v~~~~~-t~d---~~~a------- 111 (305)
+++|.|+||+|.+|+.++..|++.|+ ++++....... ....++... ..++..+.. -.| +.+.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999998 76665543311 111122211 122222211 111 2222
Q ss_pred hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHH
Q 021932 112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGI 150 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I 150 (305)
+.+.|+||.++|..... ..+. .+.+..|+.....+.+.+
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~ 126 (249)
T PRK12825 82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAV 126 (249)
T ss_pred cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 24679999999854221 1122 334555666555555554
No 232
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0034 Score=56.63 Aligned_cols=35 Identities=34% Similarity=0.341 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+++|.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999988 899999865
No 233
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.10 E-value=0.0054 Score=55.03 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=31.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
|+|.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5899999999999999999999998 899999865
No 234
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.10 E-value=0.009 Score=53.92 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
|+|.|+||+|.+|..++..|+..|. +|++.|+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 5899999999999999999999998 899999875
No 235
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.018 Score=52.26 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
+++.|+||+|.+|..++..|+..|. +|+++|.++....... .+.. ...+.. .....+.++.+...|++|.+||..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 4899999999999999999999998 8999998652111110 1111 111111 111123345667899999999864
Q ss_pred CCCCCc---hhhHHHhhHHHHHHHHHHH
Q 021932 126 RKPGMT---RDDLFNINAGIVKTLCEGI 150 (305)
Q Consensus 126 ~~~g~~---r~d~~~~N~~i~~~i~~~I 150 (305)
.....+ ..+.+..|+.....+++.+
T Consensus 91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 118 (245)
T PRK12367 91 PGGRQDPENINKALEINALSSWRLLELF 118 (245)
T ss_pred CcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 322222 2344566765444444443
No 236
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0052 Score=55.94 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=59.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH---HH-------HhCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---ED-------ALTGM 115 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~-------al~~a 115 (305)
++|.|+||+|++|+.++..|+..|. .|++++.++.. ..++.... ...+..+.. -+|. ++ .+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999988 88898876411 11111110 111221111 1222 12 23457
Q ss_pred CEEEEcCCCCCCCC-C--c---hhhHHHhhHHHHHHHHHHH
Q 021932 116 DIVIIPAGVPRKPG-M--T---RDDLFNINAGIVKTLCEGI 150 (305)
Q Consensus 116 DiVIi~ag~~~~~g-~--~---r~d~~~~N~~i~~~i~~~I 150 (305)
|+||.++|...... + + -...+..|+.....+.+.+
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~ 118 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAA 118 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999998653211 1 1 1335567877777777775
No 237
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0099 Score=53.37 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA------- 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a------- 111 (305)
+.+++.|+||+|.+|..++..|+..|. +|+++++++ ......++.+.. .++..+. .-++ .++.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999998 899999865 222223333221 1222211 1112 1122
Q ss_pred hCCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 112 LTGMDIVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 112 l~~aDiVIi~ag~~~--~~--g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
+...|++|.++|... .+ ..+ -...+..|.. ..+.+.+.+.+.. .+.+++++.
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS 143 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST 143 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 236899999998632 11 112 2334566664 4555566665443 344555543
No 238
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.0059 Score=55.48 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HHH-------hC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------LT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~a-------l~ 113 (305)
++|.|+||+|.+|..++..|+..|. +|++.|++.. .....++.... .++..+. .-+|. ++. +.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999998 8999998652 22222333221 1222111 11121 222 23
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
..|++|.++|..... ..+. ...+..|.. +.+.+.+.+.+... +.++++|.
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vsS 136 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIAS 136 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEECC
Confidence 689999999864321 1111 223455643 44555555555443 44555543
No 239
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.011 Score=52.83 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=58.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCCH----------HHHhC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------EDALT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~----------~~al~ 113 (305)
+++.|+||+|.+|..++..|+..|. +|++.+++. ......++........+..+. .-++. .+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999986 899999875 222222232211112232221 11222 12234
Q ss_pred CCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHH
Q 021932 114 GMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGI 150 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~---~---r~d~~~~N~~i~~~i~~~I 150 (305)
..|++|.++|....... + -...+..|......+.+.+
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 123 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAA 123 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 78999999986432211 1 1223455655444444443
No 240
>PRK12827 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.011 Score=52.44 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh----hhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV----TADISHMDTNAVVRGFLG-QQQ---LEDAL--- 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~----~~DL~~~~~~~~v~~~~~-t~d---~~~al--- 112 (305)
.++|.|+||+|.+|..++..|+.+|. ++++++.... ... ..++... ...+..+.. -.| .++.+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999998 8999886431 111 1112111 112222111 112 22222
Q ss_pred ----CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH
Q 021932 113 ----TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA 151 (305)
Q Consensus 113 ----~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~ 151 (305)
...|.||.++|..... ..+ -...+..|......+++.+.
T Consensus 82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 130 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL 130 (249)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4689999999864321 111 12345677777777777766
No 241
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.07 E-value=0.0046 Score=57.83 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=57.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC---CCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~ag 123 (305)
|||+|||. |.+|+.++..|...++ +|+++|+++.+. ..+.+.. ... ..++++.+++ +|+||++..
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence 48999998 9999999999999888 899999875221 2222211 111 2345566655 699999853
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN 164 (305)
.. +.++++++.+.... ++.++|..|+
T Consensus 69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 11 22333444444433 6677777743
No 242
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.07 E-value=0.029 Score=50.15 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=30.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+||+|.+|+.++..|+..|. +|+++|...
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4799999999999999999999987 899999754
No 243
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.07 E-value=0.0031 Score=59.42 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=73.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chh---hhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~---~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|||+|+|+ |.||+.++..|.+.|. .+.++-+.+. ... -+.+.+........... .++ .+.+..+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence 69999999 9999999999999994 7777666541 111 12222221101111111 122 46788999999985
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE-Eeee
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL-GVTM 193 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kvi-G~t~ 193 (305)
|. --..+.++.+..+. |+.+|+..=|=++.. +.+++ .+|+++|+ |+|.
T Consensus 76 ----Ka------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~--~~~~~~il~G~~~ 125 (307)
T COG1893 76 ----KA------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRK--ILPKETVLGGVTT 125 (307)
T ss_pred ----cc------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHH--hCCcceEEEEEee
Confidence 22 22456677777776 677888778888765 22333 35666555 6754
No 244
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.06 E-value=0.0081 Score=53.56 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+||+|++|+.++..|+.+|. +|++++++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3799999999999999999999998 899999875
No 245
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.06 E-value=0.0092 Score=56.05 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhh----hhhhcccCCceEEEEecCCCHHHHhCCCCEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT----ADISHMDTNAVVRGFLGQQQLEDALTGMDIVI 119 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~----~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVI 119 (305)
.|||+|+|+ |.||..++..|...|. +|.++++.+ ..... +-+.+......+.... . + .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~-~-~-~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA-E-T-ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC-C-C-cccccccCEEE
Confidence 479999999 9999999999998887 899999853 11110 0011101001111111 1 1 13356889999
Q ss_pred EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932 120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (305)
Q Consensus 120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~ 191 (305)
+|. |. --..+.++.+..+. ++..++.+-|=++..-.+ ++. +|.+++++-
T Consensus 76 v~v----K~------------~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-----~~~--~~~~~v~~g 125 (305)
T PRK05708 76 LAC----KA------------YDAEPAVASLAHRLAPGAELLLLQNGLGSQDAV-----AAR--VPHARCIFA 125 (305)
T ss_pred EEC----CH------------HhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-----HHh--CCCCcEEEE
Confidence 985 11 11334455555554 788888888988875432 332 666777754
No 246
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0035 Score=57.18 Aligned_cols=111 Identities=13% Similarity=-0.036 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH---H-------HHhCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---E-------DALTGM 115 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~---~-------~al~~a 115 (305)
++|.|+||+|.+|+.++..|+.+|. +|++++++.... .++.+.. ...+..+.. -+|. . +.+...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999997 899999865211 1111110 011111110 1121 1 123467
Q ss_pred CEEEEcCCCCCCCC---C---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 116 DIVIIPAGVPRKPG---M---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 116 DiVIi~ag~~~~~g---~---~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
|.||.++|...... . +-.+.+..|+.. .+.+.+.+++..... ++++|
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~vs 135 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGH-IIQIS 135 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEEc
Confidence 99999999653211 1 123345566665 455555556554444 44444
No 247
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0058 Score=54.74 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEe-cCCC---HHHH-------h
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l 112 (305)
+.++|.|+||+|.+|..++..|++.|. +|++++++.. .....++.. ..+..+. .-++ .++. +
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF 87 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 345899999999999999999999997 8999998652 111122211 1111110 1111 1122 2
Q ss_pred CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t 163 (305)
...|++|.++|...... .+ -...+..|......+.+.+.++ ...+.++++|
T Consensus 88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 147 (255)
T PRK06841 88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLA 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 46799999998643111 11 1234566666555555555443 1234555554
No 248
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.03 E-value=0.01 Score=53.43 Aligned_cols=35 Identities=34% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 45899999999999999999999998 899999865
No 249
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.0046 Score=56.65 Aligned_cols=111 Identities=10% Similarity=0.039 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHh--------CCCCE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL--------TGMDI 117 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al--------~~aDi 117 (305)
++|.|+||+|.+|..++..|+..|. +|++.++++... .++.... ...+.. .....+.++++ ...|+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~-~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~ 79 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEG-LEAFQLDYAEPESIAALVAQVLELSGGRLDA 79 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCC-ceEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence 4799999999999999999999998 899999865211 1121111 001111 00001111222 24699
Q ss_pred EEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 118 VIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 118 VIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
+|.++|...... .+ ..+.+..|+.. .+.+.+.+.+.+. +.|+++|
T Consensus 80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~is 134 (277)
T PRK05993 80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCS 134 (277)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEEC
Confidence 999998643211 11 23345666654 5667777766543 3455554
No 250
>PRK07904 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.012 Score=53.37 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL--- 112 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al--- 112 (305)
.+.++|.|+||+|.+|..++..|+.++ . .|+++++++. .....++.... ..++..+.. -+| .++.+
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHH
Confidence 345589999999999999999998875 6 8999998752 22223343321 112222111 112 11112
Q ss_pred ---CCCCEEEEcCCCCCCCCC---ch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932 113 ---TGMDIVIIPAGVPRKPGM---TR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 113 ---~~aDiVIi~ag~~~~~g~---~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t 163 (305)
.+.|++|.++|....... +. .+.+..|+. +.+.+.+.+.+.+.. .++++|
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~-~iv~is 145 (253)
T PRK07904 83 FAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG-QIIAMS 145 (253)
T ss_pred HhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc-eEEEEe
Confidence 379999999887532111 11 123566654 335567777665544 444443
No 251
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.01 E-value=0.0073 Score=53.63 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------- 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------- 112 (305)
.+++.|+|++|.+|..++..|+..|. +|++++++.. .....++... ..++..+.. -++ +++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999998 9999998751 1112233221 122332211 112 22223
Q ss_pred CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHH
Q 021932 113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIA 151 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~ 151 (305)
.+.|+||.++|...... .+. ...+..|+.....+.+.+.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 127 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVL 127 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 37999999998643211 111 2335556554444444443
No 252
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.013 Score=54.82 Aligned_cols=115 Identities=22% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---H-------HH
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DA 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~a 111 (305)
+.+++.|+||+|.+|..++..|+..|. +|++.+++.. .....++........+..+. .-.|+ + +.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 446899999999999999999999997 8999998752 22223333211111222211 11122 1 11
Q ss_pred hCCCCEEEEcCCCCCCCC--Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932 112 LTGMDIVIIPAGVPRKPG--MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~g--~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t 163 (305)
....|++|.+||....+. .+ ....+..|.. +.+.+.+.+.+. .+.|+++|
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vs 149 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQS 149 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEe
Confidence 245899999998643211 11 2223444543 455556555543 34444444
No 253
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.00 E-value=0.012 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446899999999999999999999998 899999865
No 254
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.99 E-value=0.0071 Score=55.86 Aligned_cols=98 Identities=24% Similarity=0.264 Sum_probs=64.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC-CCCEEEEcCCCCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVPRK 127 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~~~ 127 (305)
|.|.|++|+||+++...|...|+ +|.++-++..+... ..|. .+... +.+++... ++|+||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHP----NVTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence 57999999999999999999999 99999886632111 1111 11111 11223333 79999999997632
Q ss_pred ---CCCch-hhHHHhhHHHHHHHHHHHHHhCCCc
Q 021932 128 ---PGMTR-DDLFNINAGIVKTLCEGIAKCCPKA 157 (305)
Q Consensus 128 ---~g~~r-~d~~~~N~~i~~~i~~~I~~~~p~a 157 (305)
....+ ..+..--+...+.+++.|.+.....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P 103 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 32222 3445556788899999999776443
No 255
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.98 E-value=0.0039 Score=59.45 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
...++|+|||. |.+|+.+|..|...|. +|..||....... +.... .. . .++++.+++||+|+++..
T Consensus 148 L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~~-----~~-~---~~l~ell~~aDiV~l~lP 213 (333)
T PRK13243 148 VYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKELG-----AE-Y---RPLEELLRESDFVSLHVP 213 (333)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHcC-----CE-e---cCHHHHHhhCCEEEEeCC
Confidence 34569999999 9999999999988887 8999998542111 11110 11 1 256788999999999863
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS 168 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~ 168 (305)
.. + + +..++.. +.+....|.+++|+++ ..+|.
T Consensus 214 ~t--~-~--------T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 214 LT--K-E--------TYHMINE--ERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred CC--h-H--------HhhccCH--HHHhcCCCCeEEEECcCchhcCH
Confidence 21 1 1 1111211 2344445889999986 55654
No 256
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.98 E-value=0.0044 Score=56.87 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=56.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh------CC-CCEEEE
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TG-MDIVII 120 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al------~~-aDiVIi 120 (305)
||.|+||+|++|+.++..|+..|+ +|..+.++........... .... +.....+.+++ ++ +|.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~~~~~~----~~~d-~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAGPNEKH----VKFD-WLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccCCCCcc----cccc-CCCHHHHHHHHhcccCcCCceeEEEE
Confidence 589999999999999999999888 8999988752111000000 0000 11112345566 67 999998
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
+++... .. .+..+.+++..++.+-+-+|.
T Consensus 74 ~~~~~~----~~-------~~~~~~~i~aa~~~gv~~~V~ 102 (285)
T TIGR03649 74 VAPPIP----DL-------APPMIKFIDFARSKGVRRFVL 102 (285)
T ss_pred eCCCCC----Ch-------hHHHHHHHHHHHHcCCCEEEE
Confidence 765321 11 233456677777666444443
No 257
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.046 Score=49.69 Aligned_cols=116 Identities=21% Similarity=0.187 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCc-eEEEEecCCCH----------HHHhC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQL----------EDALT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~t~d~----------~~al~ 113 (305)
+++.|+||+|.+|..++..|+..|. +|+++++++ ......++....... ...... -+|. .+.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~ 77 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALD-ISDYDAVAAFAADIHAAHG 77 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEee-CCCHHHHHHHHHHHHHhcC
Confidence 3799999999999999999999997 899999865 222222333211111 101011 1121 12234
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 021932 114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP 165 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tNP 165 (305)
..|++|.++|..... ..+. ...+..|+.....+.+. +.+....+.|++++..
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~ 139 (272)
T PRK07832 78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA 139 (272)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 689999999864211 1122 23455566544444444 4333334566666544
No 258
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0091 Score=55.59 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-----hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI 119 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-----g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVI 119 (305)
..+||+|+|. |.+|..++..|...|+ .+.+++.+... +..+++.+.. . .+...++.++||+||
T Consensus 2 ~~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----~-----~~~~~~~~~~aD~Vi 69 (279)
T COG0287 2 ASMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----T-----VAGLAEAAAEADLVI 69 (279)
T ss_pred CCcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----c-----cchhhhhcccCCEEE
Confidence 3569999998 9999999999999999 55555554411 1112222211 0 111247789999999
Q ss_pred EcCC
Q 021932 120 IPAG 123 (305)
Q Consensus 120 i~ag 123 (305)
++..
T Consensus 70 vavP 73 (279)
T COG0287 70 VAVP 73 (279)
T ss_pred Eecc
Confidence 9864
No 259
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.97 E-value=0.0066 Score=54.50 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-----
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL----- 112 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al----- 112 (305)
.+.++|.|+||+|.+|..++..|+..|. +|+++|+++ +.....++.... .++..+. .-+| +.+++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3455899999999999999999999998 999999875 222223333211 1122111 1112 22222
Q ss_pred --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 021932 113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 113 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~tNP 165 (305)
...|++|.++|..... ..+ -...+..|+.-...+. +.+.+.. .+.+++++..
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~ss~ 148 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG-YGRIIAITSI 148 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEeec
Confidence 3468999999864211 111 1234556666555555 4443333 4556666654
No 260
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.97 E-value=0.0029 Score=56.35 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=61.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVPRK 127 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~ 127 (305)
|+|+||+|.+|+.++..|+..++ +|..+=++........|.+... .-+.. +.....+.++|+|+|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 78999999999999999999777 7787776652222333443321 11111 1111346678999999999876432
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158 (305)
Q Consensus 128 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~ai 158 (305)
. .-.+..+.++++..+.+-+-+
T Consensus 77 --~-------~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 77 --P-------SELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp --C-------CHHHHHHHHHHHHHHHT-SEE
T ss_pred --h-------hhhhhhhhHHHhhhccccceE
Confidence 1 124556777888888775444
No 261
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.96 E-value=0.0054 Score=57.38 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=44.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC---CCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a 122 (305)
|||+|||. |.+|+.++..|+..|+ +|.++|+++.. ..++.+.. +.. ..++++.++. +|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 48999998 9999999999999998 99999997522 12222211 111 1244455554 69999985
No 262
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.96 E-value=0.008 Score=56.31 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.++|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~ 40 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNL 40 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 345899999999999999999999997 899999865
No 263
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.012 Score=52.59 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=47.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhh-hhcccCCceEEEEe-cCC---CHHHHhC-CCCEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTAD-ISHMDTNAVVRGFL-GQQ---QLEDALT-GMDIVI 119 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~D-L~~~~~~~~v~~~~-~t~---d~~~al~-~aDiVI 119 (305)
++|.|+||+|.+|..++..|++.|. ++++++++.... ...+ .... ...+..+. .-+ ++.+++. +.|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 4799999999999999999999997 888888764211 1111 1111 11122111 111 2334444 899999
Q ss_pred EcCCCC
Q 021932 120 IPAGVP 125 (305)
Q Consensus 120 i~ag~~ 125 (305)
.++|..
T Consensus 79 ~~ag~~ 84 (257)
T PRK09291 79 NNAGIG 84 (257)
T ss_pred ECCCcC
Confidence 999865
No 264
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.011 Score=54.27 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~ 113 (305)
+.+.|+||+|.+|..++..|+..|. +|++.|+++ +.....++... ..++..+.. -+| +++. +.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999998 899999875 22222233321 112222111 112 2222 23
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN 164 (305)
..|++|.++|..... ..+. ...+..|+... +.+.+.+.+.+..+.+++++.
T Consensus 83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 579999999864211 1122 23345565444 444444545543455666553
No 265
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.94 E-value=0.0097 Score=53.42 Aligned_cols=115 Identities=19% Similarity=0.261 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HH-------H
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------A 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~-------a 111 (305)
..+++.|+||+|.+|..++..|+..|. +|++.|++.. .....++.+.. ..+..+. .-+|. ++ .
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999997 9999998752 22222333221 1121111 11121 11 1
Q ss_pred hCCCCEEEEcCCCCCC-C--CC---chhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932 112 LTGMDIVIIPAGVPRK-P--GM---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS 163 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~-~--g~---~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t 163 (305)
+...|++|.++|.... + .. +-...+..|......+.+.+.++ ...+.++++|
T Consensus 84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is 144 (254)
T PRK08085 84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINIC 144 (254)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 2357999999986421 1 11 12234556655544444444433 2234555554
No 266
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.94 E-value=0.02 Score=50.61 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC----HHHHhCCCCEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ----LEDALTGMDIVI 119 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d----~~~al~~aDiVI 119 (305)
+.+++.|+|++|.+|..++..|++.|. +|+++|++.... +. .++..+.. -++ ..+.+...|++|
T Consensus 4 ~~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv 72 (235)
T PRK06550 4 MTKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILC 72 (235)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEE
Confidence 345899999999999999999999998 899999865211 00 11111110 011 123356789999
Q ss_pred EcCCCCCC--C--CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEec
Q 021932 120 IPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS 163 (305)
Q Consensus 120 i~ag~~~~--~--g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~t 163 (305)
.++|.... + ..+ -...+..|+.....+.+.+ .+.. .+.+++++
T Consensus 73 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~s 126 (235)
T PRK06550 73 NTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK-SGIIINMC 126 (235)
T ss_pred ECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence 99986421 1 111 1234556655444444444 3332 34555554
No 267
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.0088 Score=53.19 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++++.|+|++|.+|..++..|+++|. +|+++|+++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 40 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ 40 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999998 899999875
No 268
>PRK09186 flagellin modification protein A; Provisional
Probab=96.92 E-value=0.011 Score=52.96 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|..++..|+..|. +|++.+++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 35899999999999999999999998 899998865
No 269
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.91 E-value=0.0067 Score=54.43 Aligned_cols=96 Identities=19% Similarity=0.302 Sum_probs=67.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
+||+|||. |.+|..+...+.... -++-+.+||.+..+. ..+......+. .++..+.+.+.|++|.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~--~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKA--KELEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHH--HHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 58999999 999999988776553 356778899875322 22232211111 1355566799999999984
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
.+.+++++.++-+.+.|.+|+-+.--+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 4678999999999999988877665554
No 270
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.005 Score=55.43 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=31.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
|+++|+|+ |.+|+++|..|...|+ +++++|.++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDE 33 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCH
Confidence 68999999 9999999999999999 999999987
No 271
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.90 E-value=0.011 Score=56.00 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
..++|+|+|. |.+|+.+|..|...|. +|..+|...... .. +..+....++++.+++||+|+++...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~~---------~~~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--PG---------VQSFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--CC---------ceeecccccHHHHHhcCCEEEECCCC
Confidence 4469999998 9999999999998888 999999743110 00 00011123578999999999998532
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
. ..+..++. .+.+.+..|++++|+++
T Consensus 201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred C-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 1 11222222 23455556889999986
No 272
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.012 Score=53.05 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------hC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~ 113 (305)
++|.|+||+|.+|..++..|+..|. +|+++|++.. .....++.... ..+..+.. -.|. .++ +.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998887 8999998752 22222333221 22222111 1222 122 23
Q ss_pred CCCEEEEcCCCCCCCC---C-ch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKPG---M-TR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g---~-~r---~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN 164 (305)
+.|+||.++|...... . +. .+.+..|+.....+.+.+.++- ..+.+++++.
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS 137 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSS 137 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 6899999998643211 1 11 2335666666666655554322 1345555544
No 273
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.89 E-value=0.0082 Score=54.13 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCC---CHHHH-------hCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ---QLEDA-------LTG 114 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~---d~~~a-------l~~ 114 (305)
.+++.|+||+|.+|..++..|+..|. +|++++.++.......+... ..++..+. .-+ +.++. +..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999998 89998875422211222211 11222111 111 22222 235
Q ss_pred CCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 115 MDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 115 aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
.|++|.++|...... .+ ....+..|+. +.+.+.+.+.+....+.|++++.
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS 143 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS 143 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 799999998643211 11 2233455644 45555555555443466666654
No 274
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.89 E-value=0.0032 Score=56.66 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh-------hhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIV 118 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV 118 (305)
.++|.|+||+|.+|..++..|+..|. +|+++++++.... ..|+.+.. .+.... ....+.+...|+|
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~D~~~~~---~~~~~~--~~~~~~~~~id~v 81 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDDLPEGVEFVAADLTTAE---GCAAVA--RAVLERLGGVDIL 81 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhhcCCceeEEecCCCCHH---HHHHHH--HHHHHHcCCCCEE
Confidence 35899999999999999999999998 8999998652110 01111110 000000 0112334578999
Q ss_pred EEcCCCCCCC-C----Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 119 IIPAGVPRKP-G----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 119 Ii~ag~~~~~-g----~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
|.++|..... + .+ ..+.+..|+. +.+.+.+.+.+... +.++++|.
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS 138 (260)
T PRK06523 82 VHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTS 138 (260)
T ss_pred EECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEec
Confidence 9999853211 1 11 2233445544 34555566655443 45555554
No 275
>PRK07574 formate dehydrogenase; Provisional
Probab=96.88 E-value=0.0099 Score=57.79 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
....++|+|||. |.+|..+|..|...|. +|+.+|....... ..... .+... .++++.++.||+|+++.
T Consensus 189 ~L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~~---~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 189 DLEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTYH---VSFDSLVSVCDVVTIHC 256 (385)
T ss_pred ecCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Cceec---CCHHHHhhcCCEEEEcC
Confidence 345579999999 9999999999988887 9999998642111 11110 12211 35788999999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS 168 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~ 168 (305)
... + ++-.++. .+.+....|.+++|+++ ..+|.
T Consensus 257 Plt--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe 291 (385)
T PRK07574 257 PLH--P---------ETEHLFD--ADVLSRMKRGSYLVNTARGKIVDR 291 (385)
T ss_pred CCC--H---------HHHHHhC--HHHHhcCCCCcEEEECCCCchhhH
Confidence 321 1 1112221 23344445788999886 44553
No 276
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.88 E-value=0.0063 Score=55.54 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=45.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|||+|||+ |.+|..++..|...++ ..++.++|.+... +.++.... ..+... .+..+.++++|+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence 48999998 9999999999988775 3456778775422 22222211 112221 35567789999999986
No 277
>PRK08264 short chain dehydrogenase; Validated
Probab=96.88 E-value=0.022 Score=50.41 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE----ecCCCHHHHh---CCCC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDAL---TGMD 116 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~~al---~~aD 116 (305)
.+.++|.|+||+|.+|+.++..|+..|. .+|++++++...... . ...+..+ ....++++.+ ...|
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~-----~--~~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD-----L--GPRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh-----c--CCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 3446899999999999999999998885 378888876521111 1 0111111 1111222333 3589
Q ss_pred EEEEcCCCCCCCC----Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 021932 117 IVIIPAGVPRKPG----MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP 165 (305)
Q Consensus 117 iVIi~ag~~~~~g----~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNP 165 (305)
+||.++|.....+ .+. .+.+..|......+.+.+.+. ...+.++++|..
T Consensus 76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 134 (238)
T PRK08264 76 ILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV 134 (238)
T ss_pred EEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence 9999998732111 111 233455665555555554432 234455555543
No 278
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.011 Score=53.30 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCHH---HH------
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE---DA------ 111 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~---~a------ 111 (305)
.+.++|.|+||+|.+|..++..|+.+|. +|+++++++. .....++.. ..++..+. .-.|.+ +.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHh
Confidence 3446899999999999999999999997 8999998751 111122211 11222211 112221 11
Q ss_pred hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932 112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN 164 (305)
+...|++|.++|...... .+ -.+.+..|+.....+.+.+.++ .+.+.+++++.
T Consensus 78 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS 139 (263)
T PRK09072 78 MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS 139 (263)
T ss_pred cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 356799999998643211 11 1234556766655555555432 22355555554
No 279
>PRK06398 aldose dehydrogenase; Validated
Probab=96.88 E-value=0.028 Score=50.81 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-----hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-----~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
.+++.|+||+|.+|..++..|+..|. +|+++|+++... ...|+.+.. .+... -....+.+...|++|.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~ 78 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN 78 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence 35899999999999999999999998 899999865211 111222211 00000 0011122357899999
Q ss_pred cCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932 121 PAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 121 ~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN 164 (305)
++|..... ..+ -.+.+..|+... +.+.+.+.+. ..+.|+++|.
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS 131 (258)
T PRK06398 79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS 131 (258)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 99864321 111 223355665544 4444444433 3455555543
No 280
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.88 E-value=0.0095 Score=52.62 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEe-cCCC---HHHH------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------ 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a------ 111 (305)
+.++|.|+|++|.+|+.++..|++.|. +|+++..+.. .....++... ..++..+. .-.+ +.++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999999988 7777765442 1111222211 11222111 1112 1122
Q ss_pred -hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecC
Q 021932 112 -LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN 164 (305)
Q Consensus 112 -l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tN 164 (305)
+.+.|.||.++|..... ..+. ...+..|+.....+.+.+.++. ....++++|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 23689999999864321 1111 2234567766666666666543 2234444443
No 281
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.0058 Score=54.98 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 5899999999999999999999998 899999875
No 282
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.87 E-value=0.0078 Score=63.08 Aligned_cols=92 Identities=21% Similarity=0.319 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
+||+|||+ |.+|..++..+...|+..+|..+|.++.. ..+.++ ... .. ..+++.++++++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~---g~~--~~---~~~~~~~~~~~aDvVilavp~- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL---GVI--DR---GEEDLAEAVSGADVIVLAVPV- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC---CCC--Cc---ccCCHHHHhcCCCEEEECCCH-
Confidence 58999998 99999999999988854479999987621 111211 110 01 123567789999999998631
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (305)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t 163 (305)
..+.++++.+.++. ++.+|+.++
T Consensus 74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 ---------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 23455666666654 555555443
No 283
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.87 E-value=0.0071 Score=56.81 Aligned_cols=108 Identities=18% Similarity=0.279 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCCc--hh---hh--------hhhcccCCceEEEEecCCCHHHH
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTP--GV---TA--------DISHMDTNAVVRGFLGQQQLEDA 111 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~~~--g~---~~--------DL~~~~~~~~v~~~~~t~d~~~a 111 (305)
++||+-||| |+||......++. ++. .+|.++|++..+ +. .+ |....-...++- | ++|.+.+
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~-i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-f--stdieka 75 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPD-IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-F--STDIEKA 75 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCc-eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-e--ecchHHH
Confidence 369999999 9998766544443 443 399999997621 11 01 111111123333 3 4688999
Q ss_pred hCCCCEEEEcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932 112 LTGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi 160 (305)
++.||+|++....|.|. |.... ....++.....++.|.+++....++
T Consensus 76 i~eadlvfisvntptkt~g~gkg--~aadlky~es~ar~ia~~s~~~kiv 123 (481)
T KOG2666|consen 76 IKEADLVFISVNTPTKTYGLGKG--KAADLKYWESAARMIADVSVSDKIV 123 (481)
T ss_pred hhhcceEEEEecCCcccccCCCC--cccchhHHHHHHHHHHHhccCCeEE
Confidence 99999999998877653 21100 0123455666666666666433333
No 284
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.86 E-value=0.0087 Score=56.41 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
...+||+|+|+ |.+|..++..|...+. .+|.++|++..+ ..+.++. ..+.. ..++++++.++|+||.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA 245 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence 45679999999 9999999988887553 489999986522 2222221 11111 12566888999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 169 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l 169 (305)
.+.+.. ..++.+..+.. .....+++-+++|-|+=
T Consensus 246 t~~~~~------------~~~~~~~~~~~--~~~~~~viDlavPrdi~ 279 (311)
T cd05213 246 TGAPHY------------AKIVERAMKKR--SGKPRLIVDLAVPRDIE 279 (311)
T ss_pred CCCCch------------HHHHHHHHhhC--CCCCeEEEEeCCCCCCc
Confidence 875521 11122221111 12456888899999864
No 285
>PRK12746 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.022 Score=51.00 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D-~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al------- 112 (305)
++|.|+||+|.+|+.++..|+.+|. ++++++ .+. ......++... ...+..+. .-+| ..+++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999987 776653 432 11111122211 11122111 1122 22222
Q ss_pred ------CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932 113 ------TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (305)
Q Consensus 113 ------~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN 164 (305)
.+.|++|.++|...... .+. ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 25899999998643211 111 2345567776666666666543 2244555543
No 286
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.85 E-value=0.012 Score=47.94 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=45.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|||+|+|++|.+|+.++..+...+-..=+..+|.++......|+.+... ...+.. ++|+++.+..+|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEcC
Confidence 5999999999999999999988543323456666541112233333211 122222 357888999999988863
No 287
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.85 E-value=0.0062 Score=58.67 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=47.7
Q ss_pred CEEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~-~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+||+|+||+|.||+.+...|. +..+ ..+++++......|........ ...++. .++ .+++++.|++|+++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 5555 3788888875543443322221 112332 112 247899999999986
No 288
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=96.85 E-value=0.019 Score=50.56 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=65.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------CC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG 114 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------~~ 114 (305)
|.|+|++|.+|+.++..|+++|+ +|++++.+. ......++.+.. .++.... .-+| +++.+ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999998 899998754 112222333221 1122111 1112 22233 34
Q ss_pred CCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 021932 115 MDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNP 165 (305)
Q Consensus 115 aDiVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tNP 165 (305)
.|+||.++|..... + ....+.+..|......+.+.+.++. ..+.++++|..
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 69999999864211 1 1224456678777777777666542 23455555543
No 289
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=96.84 E-value=0.012 Score=54.87 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=74.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh---hhhhhcccCCceEEE-EecCCCHHHHhC--CCCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~---~~DL~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi 120 (305)
|++.|+|++||+|+++...+..+....+|+.+|.-.-.|. ..++.+......+++ +.......+.++ +.|.|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5899999999999999988777665457888887541222 234444322222332 111122334555 6899999
Q ss_pred cCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEec
Q 021932 121 PAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLIS 163 (305)
Q Consensus 121 ~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-aiviv~t 163 (305)
.|.-.. +.=....++++.|+-....+.+..+++... -++-|.|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HIST 126 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHIST 126 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEecc
Confidence 775221 000123567899999999999999999864 3444444
No 290
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.84 E-value=0.011 Score=56.38 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=47.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
..+.+||+|||. |.+|.++|..|...|+ +|+..+...... .+...... +.. .+.++++++||+|+++.
T Consensus 14 ~L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~G---~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 14 LIKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEADG---FEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred hhCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHCC---Cee----CCHHHHHhcCCEEEEcC
Confidence 345569999999 9999999999999998 888877653211 11111111 111 25678999999999986
No 291
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.84 E-value=0.022 Score=51.32 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al------- 112 (305)
.+++.|+||+|.+|..++..|+..|. +|+++|+++. .....++.......++..+. .-+| .++.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34799999999999999999999998 8999998762 22223333210111222211 1112 22222
Q ss_pred CCCCEEEEcCCCCCCC--C-Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKP--G-MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~--g-~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN 164 (305)
...|++|.++|..... . .+ -...+..|+... +.+.+.+.+.. .+.|+++|.
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 145 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIAS 145 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECC
Confidence 3689999999864211 1 11 122344555444 44444454433 355555543
No 292
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.84 E-value=0.0099 Score=53.75 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.+++.|+||+|.+|..++..|+..|. +|++.|+++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 45899999999999999999999998 999999875
No 293
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.01 Score=53.22 Aligned_cols=34 Identities=35% Similarity=0.322 Sum_probs=30.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+++.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999887 899999865
No 294
>PRK06128 oxidoreductase; Provisional
Probab=96.83 E-value=0.018 Score=53.47 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----chhhhhhhcccCCceEEEEe-cCCC---HH-------H
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFL-GQQQ---LE-------D 110 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~----~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------~ 110 (305)
.++|.|+||+|.+|..++..|+..|. +|++.+.+.. ......+.... .++..+. .-+| .+ +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999998 8888766431 11112222211 1122111 1112 11 2
Q ss_pred HhCCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932 111 ALTGMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (305)
Q Consensus 111 al~~aDiVIi~ag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN 164 (305)
.+...|++|.++|... .+ ..+ ....+..|+.....+++.+.++- ..+.|++++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 2346899999998642 11 112 23456778777777777776553 3456666654
No 295
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=96.83 E-value=0.017 Score=51.39 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------ 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------ 112 (305)
.+++.|+||+|.+|+.++..|+..|. ++++.+... ......++.+. ..++..+.. .+| ..+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999887 777655432 11122233321 122322211 112 22222
Q ss_pred -CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932 113 -TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (305)
Q Consensus 113 -~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN 164 (305)
...|+||.++|...... +.-.+.+..|......+.+.+.++ ...+.+++++.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 34799999998643211 122344566766655555555543 23345555554
No 296
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.83 E-value=0.0058 Score=57.12 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=46.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
|||++||. |.+|..++..|...|+ ++.++|+++. ..++.... ... ..+..++.+++|+||++..
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMVP 64 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 48999998 9999999999999998 8899998652 12222211 111 1245677899999999863
No 297
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.031 Score=50.86 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh------C
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------T 113 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------~ 113 (305)
.+.+.|+||+|.+|..++..|+..|. +|+++|++. +.....++.... ..++..+.. -+| .++.+ .
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 34789999999999999999999998 899999875 222222332211 112222111 112 22222 3
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN 164 (305)
..|++|.++|.+... ..+. ...+..| +...+.+.+.+.+.. .+.|+++|.
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS 144 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS 144 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 589999999864321 1122 2233444 445677777776554 355555554
No 298
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.83 E-value=0.012 Score=57.81 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=79.0
Q ss_pred cchhhHHHHHHH--hhhCCCccc-------------c-ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 021932 5 TSGANQRIARIA--AHLHPPTLQ-------------I-EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKI 68 (305)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~ 68 (305)
|.+--+|+.+++ +.|.-|-+- . +|++ .|..+.-.-.......+|+|+|+ |.+|..++..+..
T Consensus 146 TttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~~dn~~g~g~s-~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~ 223 (413)
T cd00401 146 TTTGVHRLYKMEKEGKLKFPAINVNDSVTKSKFDNLYGCRES-LIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRG 223 (413)
T ss_pred chHHHHHHHHHHHCCCCCCCEEEecchhhcccccccchhchh-hHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHH
Confidence 555567877775 447666651 2 4555 34333222112234569999999 9999999999988
Q ss_pred CCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 021932 69 NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC 147 (305)
Q Consensus 69 ~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~ 147 (305)
.|. +|+.+|+++.+ ..+.++ . . ... +.+++++++|+||.+.|.+ .++..
T Consensus 224 ~Ga--~ViV~d~d~~R~~~A~~~--G--~---~~~----~~~e~v~~aDVVI~atG~~---------------~~i~~-- 273 (413)
T cd00401 224 QGA--RVIVTEVDPICALQAAME--G--Y---EVM----TMEEAVKEGDIFVTTTGNK---------------DIITG-- 273 (413)
T ss_pred CCC--EEEEEECChhhHHHHHhc--C--C---EEc----cHHHHHcCCCEEEECCCCH---------------HHHHH--
Confidence 887 78889987632 222211 1 1 111 2357889999999987532 12221
Q ss_pred HHHHHhCCCcEEEEecCC
Q 021932 148 EGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 148 ~~I~~~~p~aiviv~tNP 165 (305)
..+....+.+++++++.+
T Consensus 274 ~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 274 EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHHhcCCCCcEEEEeCCC
Confidence 113334578899999865
No 299
>PRK06701 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.038 Score=51.18 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=69.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL--- 112 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al--- 112 (305)
+.+.++|.|+||+|.+|..++..|+..|. +|+++++++. ......+... ..++..+.. -++ ..+.+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHH
Confidence 33446899999999999999999999998 8999998652 1112222211 122222111 111 22222
Q ss_pred ----CCCCEEEEcCCCCCC--C--CCc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 021932 113 ----TGMDIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN 164 (305)
Q Consensus 113 ----~~aDiVIi~ag~~~~--~--g~~---r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tN 164 (305)
...|++|.++|.... + ..+ -...+..|+.....+.+.+.+. .+.+.++++|.
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 357999999986321 1 111 2345677877777777777654 24455666654
No 300
>PRK06196 oxidoreductase; Provisional
Probab=96.82 E-value=0.021 Score=53.38 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEE-EecCCCHHH-------HhCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG-FLGQQQLED-------ALTGM 115 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~-~~~t~d~~~-------al~~a 115 (305)
.++|.|+||+|.+|..++..|+..|. +|++.+++.... ...++.... -+.. +....+.++ .+.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 35899999999999999999999998 899999875211 111221110 0110 000011111 12468
Q ss_pred CEEEEcCCCCCCCC----CchhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932 116 DIVIIPAGVPRKPG----MTRDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 116 DiVIi~ag~~~~~g----~~r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t 163 (305)
|++|.+||....+. +.....+..|.. +.+.+.+.+.+.. .+.|+++|
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 155 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS 155 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence 99999998643221 112333455544 4566666666543 34555555
No 301
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.82 E-value=0.0063 Score=60.98 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc-c--CCceEEEEecCCCHHHHhCC---CC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D--TNAVVRGFLGQQQLEDALTG---MD 116 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~-~--~~~~v~~~~~t~d~~~al~~---aD 116 (305)
+...++|++||- |.+|+.+|..|+..|+ +|..+|++..+ +.++.+. . ....+.. ..++++..+. +|
T Consensus 3 ~~~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~d 74 (493)
T PLN02350 3 SAALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPR 74 (493)
T ss_pred CCCCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCC
Confidence 344568999998 9999999999999999 99999986522 1222221 0 0011111 2345555554 99
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP 165 (305)
Q Consensus 117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP 165 (305)
+||++... -+.++++...+.... |..++|-.||-
T Consensus 75 vIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 75 SVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred EEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 99998531 233444444455443 67777777653
No 302
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.033 Score=49.49 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH----------HHHh
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~~al 112 (305)
.++|.|+||+|.+|..++..|+..|. +|+++++++. .....++. ..+..+. ...|. .+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999998 8999998651 11111111 1111111 11121 1223
Q ss_pred CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh
Q 021932 113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC 153 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~ 153 (305)
...|++|.++|...... .+ -...+..|+.....+.+.+.++
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 125 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPL 125 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47899999998643211 11 2235667777777777777653
No 303
>PRK08219 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.0097 Score=52.08 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhC---CCCEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALT---GMDIV 118 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~---~aDiV 118 (305)
++++.|+||+|.+|..++..|+++ . +|+++|++... ..++.+.. ..+..+.. ..+++++++ +.|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAEL--PGATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHh--ccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 458999999999999999999887 5 89999986421 11222111 01111111 123334444 69999
Q ss_pred EEcCCCC
Q 021932 119 IIPAGVP 125 (305)
Q Consensus 119 Ii~ag~~ 125 (305)
|.++|..
T Consensus 76 i~~ag~~ 82 (227)
T PRK08219 76 VHNAGVA 82 (227)
T ss_pred EECCCcC
Confidence 9999864
No 304
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.81 E-value=0.016 Score=54.73 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=31.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..+.|+||+|.+|..+|..|+..|. +|+++++++
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~ 87 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNP 87 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCH
Confidence 5899999999999999999999998 899999976
No 305
>PRK09242 tropinone reductase; Provisional
Probab=96.81 E-value=0.021 Score=51.32 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=48.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHhC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDALT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al~ 113 (305)
+++.|+||+|.+|..++..|+..|. +|++++++. ......++.......++..+.. -.+ ..+.+.
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4899999999999999999999998 899999865 2222233332211112222111 011 122345
Q ss_pred CCCEEEEcCCCC
Q 021932 114 GMDIVIIPAGVP 125 (305)
Q Consensus 114 ~aDiVIi~ag~~ 125 (305)
..|++|.++|..
T Consensus 88 ~id~li~~ag~~ 99 (257)
T PRK09242 88 GLHILVNNAGGN 99 (257)
T ss_pred CCCEEEECCCCC
Confidence 689999999863
No 306
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.014 Score=52.84 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.+++.|+||+|.+|..++..|+..|. +|++.|++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA 40 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999998 999999875
No 307
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=96.81 E-value=0.034 Score=57.98 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..++|.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~ 448 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL 448 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 346899999999999999999999998 999999875
No 308
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.032 Score=50.32 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCCHH----------HHh
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQLE----------DAL 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~~----------~al 112 (305)
.+.+.|+||+|.+|..++..|+..|. +|++.++++ +.....++.......++..+. .-+|.+ +.+
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999998 899999875 222222333221111222211 112221 123
Q ss_pred CCCCEEEEcCCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN 164 (305)
...|++|.++|...... .+. ...+..| +...+.+.+.+++.. .+.|+++|.
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 146 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS 146 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence 46799999998642111 111 1223333 344566666666543 345555543
No 309
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.79 E-value=0.024 Score=51.04 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC---HHHH-------hC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT 113 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l~ 113 (305)
+.+.+.|+|++|.+|..++..|+..|. +|+++|..+......++.... ..+..+. .-+| .++. +.
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 345899999999999999999999998 888888754222222222111 1122111 1112 2222 23
Q ss_pred CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~tN 164 (305)
..|++|.++|..... ..+ -.+.+..|+...- .+.+.+.+.++.+.++++|.
T Consensus 85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 689999999864311 111 2334556655444 44444444444566666654
No 310
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0089 Score=55.22 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~-~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||++||+ |++|+.++..|...+ + ..+|...|.++.+. .++.... ... . +++..++...+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~-g~~--~---~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEY-GVV--T---TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHc-CCc--c---cCcHHHHHhhCCEEEEEe-
Confidence 469999999 999999999999888 3 36888888765221 1233221 111 1 235568889999999986
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
|| ..+.+++++++...++-+||-+.-.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 44 346677777776445666766655554
No 311
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.79 E-value=0.0069 Score=60.36 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=61.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc-cCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~-~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
+|+|||. |.+|.++|..|+..|+ +|.++|+++.+ +.++... .....+.......++.+.++++|+||++..
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~--- 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK--- 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence 4899998 9999999999999998 99999987522 1222221 001112222111123334567999999852
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC--CCCc
Q 021932 127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN--PVNS 168 (305)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN--Pvd~ 168 (305)
++ +.+.++++.+..+- ++.+||-.+| |.+.
T Consensus 73 -~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t 105 (467)
T TIGR00873 73 -AG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDT 105 (467)
T ss_pred -Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHH
Confidence 11 23444555665554 6778888876 4443
No 312
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.022 Score=51.78 Aligned_cols=112 Identities=19% Similarity=0.172 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCC----------HHHHh
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQ----------LEDAL 112 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d----------~~~al 112 (305)
+.++|.|+||+|.+|..++..|+..|. .|++.++++. .....++... ...... -+| ..+.+
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~D-~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLV----VGGPLD-VTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccc----eEEEcc-CCCHHHHHHHHHHHHHHc
Confidence 345899999999999999999999998 8999998652 1111222111 010000 011 11223
Q ss_pred CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
.+.|++|.++|...... .+ -...+..|+. +.+.+.+.+.+.+ .+.|+++|.
T Consensus 77 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS 137 (273)
T PRK07825 77 GPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS 137 (273)
T ss_pred CCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 57899999998643211 11 1234555655 4444555555443 345665653
No 313
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.78 E-value=0.035 Score=50.23 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HH-------
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED------- 110 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~------- 110 (305)
.+.+++.|+|++|.+|..++..|+..|. ++++.|.++. .....++... ..++..+. .-+|. ++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999999998 8999987652 2222223221 11222211 11122 11
Q ss_pred HhCCCCEEEEcCCCCCC-C-CCc----hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 021932 111 ALTGMDIVIIPAGVPRK-P-GMT----RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV 166 (305)
Q Consensus 111 al~~aDiVIi~ag~~~~-~-g~~----r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNPv 166 (305)
.+...|++|.++|.... + ... -...+..|... .+.+.+.+.+. ..+.|++++...
T Consensus 84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~ 148 (265)
T PRK07097 84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK-GHGKIINICSMM 148 (265)
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCcc
Confidence 22457999999986421 1 111 12234445443 33444444433 345666666543
No 314
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.038 Score=49.29 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=64.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCC-ceEEE-EecCCCHHHHhCC----CCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN-AVVRG-FLGQQQLEDALTG----MDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~-~~v~~-~~~t~d~~~al~~----aDiVIi 120 (305)
.++.|+||+|.+|..++..|+..|. +|+++|+++... .++...... ..+.. .....+.+++++. .|.+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 4799999999999999999999998 899999875211 111111000 11111 1111123333333 478888
Q ss_pred cCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932 121 PAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (305)
Q Consensus 121 ~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN 164 (305)
.+|...... .+. .+.+..|......+.+.+...- ....+++++.
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 887432111 122 2456778877777777766542 3344555543
No 315
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.02 Score=51.54 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT 113 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~ 113 (305)
.+++.|+||+|.+|..++..|+..|. +|+++++++. .....++... ..++..+.. -++ .++. +.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999998 8999998651 1122222211 112222111 112 2222 23
Q ss_pred CCCEEEEcCCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHH
Q 021932 114 GMDIVIIPAGVPRKP---GM---TRDDLFNINAGIVKTLCEGIAK 152 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~---~r~d~~~~N~~i~~~i~~~I~~ 152 (305)
..|++|.++|..... .. ...+.+..|+.....+.+.+.+
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLP 126 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 579999999863211 11 1223456676655555555443
No 316
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.018 Score=51.63 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHH-------Hh
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------al 112 (305)
.+++.|+||+|.+|..++..|+..|. +|++.+++.. +....++.+.. .++..+. .-+| .++ .+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999998 8999998752 22222333211 1222211 1112 111 23
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
...|++|.++|..... ..+. ...+..|+.. .+.+.+.+.+....+.+++++
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4789999999864321 1111 2234555544 444444444443345555554
No 317
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.011 Score=52.05 Aligned_cols=34 Identities=24% Similarity=0.137 Sum_probs=31.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 4899999999999999999999997 899999865
No 318
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.76 E-value=0.011 Score=61.21 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh--CCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~a 122 (305)
+.|||.|+||+|++|++++..|...++ ++... . .|+.+.. .+...+ .+.|+||.+|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~A 436 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNAA 436 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEECC
Confidence 458999999999999999999988886 55211 1 0111110 011222 2689999999
Q ss_pred CCCCCC--C---CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 021932 123 GVPRKP--G---MTRDDLFNINAGIVKTLCEGIAKCCPK 156 (305)
Q Consensus 123 g~~~~~--g---~~r~d~~~~N~~i~~~i~~~I~~~~p~ 156 (305)
+....+ + ....+.+..|+.....+++.+.+.+..
T Consensus 437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~ 475 (668)
T PLN02260 437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL 475 (668)
T ss_pred cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe
Confidence 864321 1 234567788999999999999998653
No 319
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.76 E-value=0.0053 Score=51.10 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.++|+|+|+ |.+|..++..|...+ ..++.++|.+... ..+.++... ..... ..+.++.++++|+||.+.+
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~Dvvi~~~~ 90 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEELLAEADLIINTTP 90 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhccccCCEEEeCcC
Confidence 469999998 999999999998876 3489999987522 222222211 00111 1245566899999999976
Q ss_pred CC
Q 021932 124 VP 125 (305)
Q Consensus 124 ~~ 125 (305)
..
T Consensus 91 ~~ 92 (155)
T cd01065 91 VG 92 (155)
T ss_pred CC
Confidence 54
No 320
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.76 E-value=0.0089 Score=55.59 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=64.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV 124 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~ 124 (305)
|||.|+|++|++|+.+...|. .+. +++-.|..+ +|+.+... ..+.++ .-|+||.+|.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~~------------v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPDA------------VLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChHH------------HHHHHHhhCCCEEEECccc
Confidence 579999999999999998886 445 888887654 55555431 234444 46999999986
Q ss_pred CC--CCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 021932 125 PR--KPGMTRDDLFNINAGIVKTLCEGIAKCC 154 (305)
Q Consensus 125 ~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~ 154 (305)
.. +...++..-+..|+.....+++...+++
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g 92 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEVG 92 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHhC
Confidence 43 2223456667889999999999999886
No 321
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.75 E-value=0.016 Score=51.75 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=63.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------hCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTG 114 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~~ 114 (305)
++.|+|++|.+|..++..|++.|. +|++++.++. .....++... ...+..+.. -+|. +++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999997 8999998652 2122233321 112222111 1121 112 235
Q ss_pred CCEEEEcCCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932 115 MDIVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 115 aDiVIi~ag~~~~-~--g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t 163 (305)
.|++|.++|.... + +.+.. ..+..|+. +++.+.+.+.+....+.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7999999986321 1 22222 23455544 3445555665555445665554
No 322
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.75 E-value=0.0087 Score=57.80 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=44.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~-~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+||+|+||+|.||.-+...++.++ + ..+++++......+...++... ...... ..+ .+.++++|+||+++|
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence 699999999999999998555554 4 4568887664332332223221 112121 123 256899999999875
No 323
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.74 E-value=0.035 Score=49.99 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|..++..|+..|. .|++++.++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~ 49 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT 49 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 45899999999999999999999998 899998763
No 324
>PLN02494 adenosylhomocysteinase
Probab=96.74 E-value=0.014 Score=57.99 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=81.0
Q ss_pred CcchhhHHHHHHHh--hhCCCcccc--------------ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHH
Q 021932 4 PTSGANQRIARIAA--HLHPPTLQI--------------EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67 (305)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~ 67 (305)
-|.+--+|+.+++. .|.-|-+-+ ++++ .|..+.-.-.-.....+|+|+|. |.+|..+|..+.
T Consensus 197 eTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~fDn~yGtgqS-~~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~ak 274 (477)
T PLN02494 197 ETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSKFDNLYGCRHS-LPDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMK 274 (477)
T ss_pred cccHHHHHHHHHHHCCCCCCCEEEEcChhhhhhhhcccccccc-HHHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHH
Confidence 35666788888754 587777632 3344 23322211111133469999999 999999999998
Q ss_pred hCCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHH
Q 021932 68 INPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTL 146 (305)
Q Consensus 68 ~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i 146 (305)
..|. +|+.+|+++.+ ..+. .+. +. .. +++++++.+|+||.+.|.. .++.
T Consensus 275 a~Ga--~VIV~e~dp~r~~eA~--~~G--~~---vv----~leEal~~ADVVI~tTGt~---------------~vI~-- 324 (477)
T PLN02494 275 AAGA--RVIVTEIDPICALQAL--MEG--YQ---VL----TLEDVVSEADIFVTTTGNK---------------DIIM-- 324 (477)
T ss_pred HCCC--EEEEEeCCchhhHHHH--hcC--Ce---ec----cHHHHHhhCCEEEECCCCc---------------cchH--
Confidence 7887 89999987622 1222 111 11 11 3467899999999876532 1110
Q ss_pred HHHHHHhCCCcEEEEecCCC
Q 021932 147 CEGIAKCCPKAIVNLISNPV 166 (305)
Q Consensus 147 ~~~I~~~~p~aiviv~tNPv 166 (305)
.+.+....+.+++++++-+-
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCC
Confidence 23344445889999998753
No 325
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.73 E-value=0.005 Score=58.98 Aligned_cols=74 Identities=24% Similarity=0.463 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~-~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
+.+.+||+|+||+|.+|.-+..+|..++ + ..+|.++......|+...+.. ..+.... .|. +.++++|+||+
T Consensus 2 ~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~~--~~~-~~~~~~Divf~ 74 (347)
T PRK06728 2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQE--AKI-NSFEGVDIAFF 74 (347)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEEe--CCH-HHhcCCCEEEE
Confidence 3455799999999999999999998654 3 346888876554455443322 1233221 233 56799999999
Q ss_pred cCC
Q 021932 121 PAG 123 (305)
Q Consensus 121 ~ag 123 (305)
+++
T Consensus 75 a~~ 77 (347)
T PRK06728 75 SAG 77 (347)
T ss_pred CCC
Confidence 875
No 326
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=96.73 E-value=0.015 Score=54.83 Aligned_cols=109 Identities=20% Similarity=0.139 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---C--chhhhhhhcccCCceEEEEecC-CC---HHHHh--CC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---T--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL--TG 114 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al--~~ 114 (305)
.++|.|+||+|++|++.+..|+..|+ +++++|.-. + ...+..+.+. ...+.+..+. .| +++.| ..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence 35899999999999999999999999 999999754 1 1222333332 1233332221 12 22222 24
Q ss_pred CCEEEEcCCCCC-CCC-CchhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932 115 MDIVIIPAGVPR-KPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAI 158 (305)
Q Consensus 115 aDiVIi~ag~~~-~~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~ai 158 (305)
-|-|+..|+... .+. +.+..+...|+-....+.+.+++++-..+
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~ 123 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKAL 123 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceE
Confidence 677888776432 111 23466777899999999999999983333
No 327
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0073 Score=57.26 Aligned_cols=73 Identities=27% Similarity=0.350 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhh-hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||+|+||+|.||+.+...|.... .++++.++=..+..|+. .+...... .+.. ...|. .+++++|+|++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence 3599999999999999999999854 46678887665544443 33332210 0110 00132 45779999999986
No 328
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.72 E-value=0.019 Score=51.60 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHH-------hCCCCE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGMDI 117 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi 117 (305)
.+++.|+||+|.+|..++..|++.|. +|++.+.... ....++.+... ..+.. .....+.+++ +...|+
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45899999999999999999999997 7888765431 11112221110 00110 0001112222 246799
Q ss_pred EEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 118 VIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 118 VIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
+|.++|..... ..+. ...+..|+.. .+.+.+.+.+.. .+.|+++|
T Consensus 83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~is 137 (255)
T PRK06463 83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIA 137 (255)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence 99999874311 1122 2334556554 566666665443 34555554
No 329
>PLN02712 arogenate dehydrogenase
Probab=96.72 E-value=0.011 Score=61.59 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC-CCCEEEEcC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPA 122 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~a 122 (305)
.+++||+|||. |.+|..++..|...|+ +|+.+|.+.....+.++ . +... +++++.++ ++|+||++.
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~~---~~~~el~~~~aDvVILav 433 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSYF---SDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeEe---CCHHHHHhcCCCEEEECC
Confidence 45679999998 9999999999998887 89999986421111111 1 1121 35556565 599999985
No 330
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.028 Score=50.30 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|..++..|+..|. .|+++|++.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~ 42 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL 42 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999997 899999865
No 331
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.70 E-value=0.0066 Score=57.81 Aligned_cols=64 Identities=28% Similarity=0.387 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
..+||+|||. |.+|+.+|..|+. .|. +|..+|...... ... .+.. ..++++++++||+|+++..
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~----~~~-----~~~~---~~~l~ell~~aDvIvl~lP 209 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAK----AAT-----YVDY---KDTIEEAVEGADIVTLHMP 209 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHh----HHh-----hccc---cCCHHHHHHhCCEEEEeCC
Confidence 4469999999 9999999998843 355 899999754211 111 0111 2367889999999999864
No 332
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.017 Score=54.76 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA------- 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a------- 111 (305)
+.++|.|+||+|.+|..++..|+..|. +|+++++++ +.....++.... ..+..+. .-+| .++.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999998 899999876 222222333221 1222110 1112 2222
Q ss_pred hCCCCEEEEcCCCCCCC--C-Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932 112 LTGMDIVIIPAGVPRKP--G-MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~--g-~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t 163 (305)
+...|++|.++|..... . .+ -.+.+..|.-. .+.+.+.+.+.. .+.+++++
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~is 142 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMI 142 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence 24679999999864221 1 11 12345555443 344444455443 35566554
No 333
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.0091 Score=53.01 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
||+.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4899999999999999999999988 899999865
No 334
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.68 E-value=0.0054 Score=56.92 Aligned_cols=106 Identities=21% Similarity=0.267 Sum_probs=71.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC----CC-----CcEEEEEeCCCC-chhhhhhhccc--CCceEEEEecCCCHHHHhC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVNT-PGVTADISHMD--TNAVVRGFLGQQQLEDALT 113 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~----~~-----~~el~L~D~~~~-~g~~~DL~~~~--~~~~v~~~~~t~d~~~al~ 113 (305)
..||+|.|| |.-|..++..|... |+ ...+.++|.+.+ .....||.+.. ....... ....+++++++
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~-~~~~~L~e~i~ 102 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE-KEGKSLLEVVK 102 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc-ccCCCHHHHHH
Confidence 358999999 99999999877664 65 268999998761 11111222211 0000000 01247899999
Q ss_pred --CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 114 --GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 114 --~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
++|+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||..
T Consensus 103 ~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 103 AVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred hcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 999988765533 2 235678899999999999999999986
No 335
>PLN03139 formate dehydrogenase; Provisional
Probab=96.68 E-value=0.018 Score=56.00 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+...++|+|||. |.+|..+|..|...|. +|+.+|....... ..... .+.. ..++++.+++||+|+++.
T Consensus 196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~---~~~~~---g~~~---~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPE---LEKET---GAKF---EEDLDAMLPKCDVVVINT 263 (386)
T ss_pred CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchh---hHhhc---Ccee---cCCHHHHHhhCCEEEEeC
Confidence 345679999998 9999999999987777 8999997642111 11110 1111 136788999999999985
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS 168 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~ 168 (305)
... + + +-.++. .+.+....|.+++|+++ ..+|.
T Consensus 264 Plt--~-~--------T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe 298 (386)
T PLN03139 264 PLT--E-K--------TRGMFN--KERIAKMKKGVLIVNNARGAIMDT 298 (386)
T ss_pred CCC--H-H--------HHHHhC--HHHHhhCCCCeEEEECCCCchhhH
Confidence 321 1 1 112221 23444455889999886 44553
No 336
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.68 E-value=0.013 Score=56.21 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcc--cCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+||+|+||+|.+|..++..|...+.. +++ +++..+..|+...-.+. .....+.. . ..+.++.++++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999999877654 666 66765433332211111 10011121 1 1244444469999999864
No 337
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.67 E-value=0.016 Score=52.17 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-----
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL----- 112 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al----- 112 (305)
+.+++.|+||+|.+|.+++..|+..|. .+++++... ......++.+. ..++..+. .-+| ..+++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999887 787776543 11111222221 12222221 1122 22222
Q ss_pred --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEe
Q 021932 113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLI 162 (305)
Q Consensus 113 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~ 162 (305)
...|+||.++|..... ..+ -...+..|+.....+.+.+.++. ..+.++++
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 144 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM 144 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3479999999864221 112 23346667665555555555443 23455544
No 338
>PRK12743 oxidoreductase; Provisional
Probab=96.67 E-value=0.11 Score=46.60 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chhhhhhhcccCCceEEEEe-cCCCH---HH-------Hh
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------AL 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~-------al 112 (305)
++|.|+||+|.+|..++..|+..|. +|++++... . .....++.... ..+..+. .-++. +. .+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4899999999999999999999998 888876433 1 11122332211 1222211 11222 11 12
Q ss_pred CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tN 164 (305)
...|++|.++|...... .+ -.+.+..|......+.+. +.+.+..+.++++|.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 45799999998643211 11 123455565544444444 433333456666654
No 339
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.66 E-value=0.007 Score=57.68 Aligned_cols=71 Identities=24% Similarity=0.421 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||+|+||+|++|..++..|..+++ ..||..+-.....|+..++.. ..+.... . + ..+++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d-~-~-~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED-L-T-TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee-C-C-HHHHcCCCEEEECCC
Confidence 36999999999999999999988654 247777765443344333321 2233221 1 2 245789999999875
No 340
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.66 E-value=0.029 Score=50.40 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEec-CCC---HHHHh-------C
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------T 113 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------~ 113 (305)
.+++.|+||+|.+|..++..|++.|. ++++++.++. .....++.... .++..+.. -++ ++..+ .
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999997 8888887662 22222332211 12222111 112 22223 3
Q ss_pred CCCEEEEcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHH
Q 021932 114 GMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIA 151 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~I~ 151 (305)
..|+||.++|....... +-.+.+..|+.....+.+...
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 125 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCL 125 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57999999986432211 122345566665555555444
No 341
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.66 E-value=0.018 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|+.++..|++.|. +|+++++++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999998 999999865
No 342
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.66 E-value=0.044 Score=49.15 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HHH-------h
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------L 112 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~e-l~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~a-------l 112 (305)
++|.|+||+|.+|..++..|+..|. + |+++|++.. .....++... ...+..+. .-++. .+. +
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999998887 6 999998652 1112223211 12222111 11221 122 2
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 021932 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i----~~~I~~~~p~aiviv~tN 164 (305)
.+.|++|.++|..... ..+. ...+..|+.-...+ .+.+.+....+.++++|.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 3689999999865321 1122 22345555444444 444444433455555553
No 343
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.65 E-value=0.13 Score=46.80 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+++.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~ 44 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ 44 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999998 899999865
No 344
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.65 E-value=0.0065 Score=52.97 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe--cCCCHHHHhCCCCEEEEc
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~ 121 (305)
.+|+.|+|++|.+|..++..|...+. +|.+++++.. .....++.+.. ...+.... ...+..++++++|+||.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 45899999889999999999988876 9999988652 22222232111 12222211 112335788999998887
Q ss_pred CC
Q 021932 122 AG 123 (305)
Q Consensus 122 ag 123 (305)
..
T Consensus 105 t~ 106 (194)
T cd01078 105 GA 106 (194)
T ss_pred CC
Confidence 54
No 345
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=96.65 E-value=0.033 Score=49.28 Aligned_cols=114 Identities=21% Similarity=0.140 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--cCCceEEEEec-CCC---HHHH-------hC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLG-QQQ---LEDA-------LT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~-t~d---~~~a-------l~ 113 (305)
+++.|+|++|.+|..++..|+..|. .|++.|++.. ....++... ....++..+.. -.| .+++ +.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4899999999999999999999887 8999998742 111111110 01112222211 112 2122 23
Q ss_pred CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~I~~~~p~aiviv~tN 164 (305)
..|++|.++|..... ..+ -...+..|+.....+ .+.+.+.. .+.++++|.
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss 139 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG-YGRIINISS 139 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEECC
Confidence 589999999864211 111 123345566554444 44444443 456666654
No 346
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.64 E-value=0.013 Score=50.61 Aligned_cols=95 Identities=27% Similarity=0.357 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
....++|+|+|. |.+|+.+|..+..-|. +|+.+|....... ...+. .+.. .++++.++.||+|+++.
T Consensus 33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 33 ELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADIVSLHL 99 (178)
T ss_dssp -STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SEEEE-S
T ss_pred ccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhhhhhhh
Confidence 445569999998 9999999999998888 9999998652111 11111 1121 25788999999999986
Q ss_pred CC-CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932 123 GV-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 123 g~-~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN 164 (305)
.. +...++ + |. +.+.+..+++++||++-
T Consensus 100 plt~~T~~l-----i--~~-------~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 100 PLTPETRGL-----I--NA-------EFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp SSSTTTTTS-----B--SH-------HHHHTSTTTEEEEESSS
T ss_pred cccccccee-----e--ee-------eeeeccccceEEEeccc
Confidence 42 222222 1 21 22344457889999863
No 347
>PRK05855 short chain dehydrogenase; Validated
Probab=96.64 E-value=0.015 Score=58.21 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA------- 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a------- 111 (305)
+.+++.|+||+|.+|..++..|+..|. +|++++++.. ...+.++.... ..+..+.. -+|. ++.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 446899999999999999999999998 8999998762 22222332211 12221111 1122 111
Q ss_pred hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
+...|++|.+||..... ..+. ...+..|+. ..+.+.+.+.+.+..+.|+++|.
T Consensus 390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 23579999999975321 1111 233455643 44455555666555566666654
No 348
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.64 E-value=0.018 Score=51.19 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+..++.|+|++|.+|..++..|+..|. .|+++|.++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999987 899999875
No 349
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.63 E-value=0.018 Score=50.96 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 4458999999 9999999999999997 5999999873
No 350
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.62 E-value=0.02 Score=56.03 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=78.4
Q ss_pred CcchhhHHHHHHH--hhhCCCcccc--------------ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHH
Q 021932 4 PTSGANQRIARIA--AHLHPPTLQI--------------EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67 (305)
Q Consensus 4 ~~~~~~~~~~~~~--~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~ 67 (305)
-|.+--+|+.+++ +.|.-|-+-+ ++++ .|..+.-...-.....+|+|+|. |.+|..++..+.
T Consensus 138 eTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s-~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak 215 (406)
T TIGR00936 138 ETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQS-TIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRAR 215 (406)
T ss_pred cchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccccchh-HHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHh
Confidence 3566678888876 5577776622 3444 33322211101234559999999 999999999998
Q ss_pred hCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 021932 68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC 147 (305)
Q Consensus 68 ~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~ 147 (305)
..|. +|+.+|+++.+.... ..+. . .. .+.+++++++|+||.+.|. ..++..
T Consensus 216 ~~Ga--~ViV~d~dp~r~~~A-~~~G--~---~v----~~leeal~~aDVVItaTG~---------------~~vI~~-- 266 (406)
T TIGR00936 216 GMGA--RVIVTEVDPIRALEA-AMDG--F---RV----MTMEEAAKIGDIFITATGN---------------KDVIRG-- 266 (406)
T ss_pred hCcC--EEEEEeCChhhHHHH-HhcC--C---Ee----CCHHHHHhcCCEEEECCCC---------------HHHHHH--
Confidence 8887 899999876321111 1111 1 11 1245789999999887642 122221
Q ss_pred HHHHHhCCCcEEEEecCC
Q 021932 148 EGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 148 ~~I~~~~p~aiviv~tNP 165 (305)
+.+....+.+++++++-+
T Consensus 267 ~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHF 284 (406)
T ss_pred HHHhcCCCCcEEEEECCC
Confidence 122333467888888754
No 351
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.014 Score=51.81 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHh---CCCCEEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL---TGMDIVII 120 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al---~~aDiVIi 120 (305)
+.+++.|+|++|.+|..++..|+..|. +|++++++... ..++........+.. .....+.++.+ ...|+||.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~ 83 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVN 83 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEE
Confidence 345899999999999999999999998 89999986521 111211110011111 11011222333 35799999
Q ss_pred cCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEec
Q 021932 121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLIS 163 (305)
Q Consensus 121 ~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~t 163 (305)
++|..... ..+ -.+.+..|+.....+.+.+.+. +..+.++++|
T Consensus 84 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s 136 (245)
T PRK07060 84 CAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVS 136 (245)
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 99864321 111 2234456666665555555543 2224566555
No 352
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.046 Score=48.89 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|..++..|+..|. +|+++++++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999988 899999865
No 353
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.61 E-value=0.014 Score=54.87 Aligned_cols=86 Identities=23% Similarity=0.355 Sum_probs=62.6
Q ss_pred cccCCCC----------CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC
Q 021932 36 MDCRAKG----------GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ 105 (305)
Q Consensus 36 ~~~~~~~----------~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t 105 (305)
.+|||.+ +...++|+|||.+|.||..++..|...|. +|.+++...
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t----------------------- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS----------------------- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------
Confidence 5788751 33457999999966999999999999988 888886531
Q ss_pred CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 021932 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV 166 (305)
Q Consensus 106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-NPv 166 (305)
.++++.++.||+||.+.|.+..- ..++ ..|.+++|-++ |++
T Consensus 194 ~~l~e~~~~ADIVIsavg~~~~v---~~~~-----------------ik~GaiVIDvgin~~ 235 (301)
T PRK14194 194 TDAKALCRQADIVVAAVGRPRLI---DADW-----------------LKPGAVVIDVGINRI 235 (301)
T ss_pred CCHHHHHhcCCEEEEecCChhcc---cHhh-----------------ccCCcEEEEeccccc
Confidence 14568889999999998865211 1111 45888888876 654
No 354
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.61 E-value=0.021 Score=51.41 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+++.|+|++|.+|..++..|++.|. ++++.|++.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~ 42 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT 42 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 345899999999999999999999998 999999864
No 355
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.60 E-value=0.013 Score=54.06 Aligned_cols=69 Identities=13% Similarity=0.285 Sum_probs=44.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||+|||. |.+|..++..+...+ -..-+.++|.+... +.++.... . ...+ +++++.+.++|+|+++++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--AKAC---LSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcCC
Confidence 369999998 999999998887654 22235578876521 12222211 1 1222 366676799999999974
No 356
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.60 E-value=0.049 Score=48.47 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~ 81 (305)
+.++|.|+||+|.+|..++..|+..|. +|++.+.+
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 345899999999999999999999997 88776543
No 357
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.60 E-value=0.01 Score=54.34 Aligned_cols=107 Identities=22% Similarity=0.329 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--Cchhhhhhhccc-----CCceEEEEecCCCHH
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD-----TNAVVRGFLGQQQLE 109 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~----~~~-----~el~L~D~~~--~~g~~~DL~~~~-----~~~~v~~~~~t~d~~ 109 (305)
..||.+.|| |.-|..++.+|... |+- +.+.|+|.+. ..+. .||.+.. ....... ..++.
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~---~~~L~ 99 (255)
T PF03949_consen 25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKD---WGSLL 99 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT-----SSHH
T ss_pred HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCccccc---ccCHH
Confidence 458999999 99999999877765 774 7899999875 1221 2332211 0111111 13789
Q ss_pred HHhCCC--CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHH
Q 021932 110 DALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVP 171 (305)
Q Consensus 110 ~al~~a--DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd--~lt~ 171 (305)
|+++++ |+.|=+.+.+ | -+.+++++.|.+++++.+|+=.|||.. -.++
T Consensus 100 eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 100 EAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp HHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred HHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 999999 9988876643 2 236788999999999999999999988 5664
No 358
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.061 Score=48.18 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHH-------HhC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LED-------ALT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~-------al~ 113 (305)
+++.|+||+|.+|..++..|+..|. .|++.|++. +.....++.... ..+..+.. -+| .++ .+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999998 899999875 222222332211 12222211 112 111 124
Q ss_pred CCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCcEEEEec
Q 021932 114 GMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS 163 (305)
Q Consensus 114 ~aDiVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~t 163 (305)
..|++|.++|.... + ..+. ...+..|+.....+.+.+ .+....+.++++|
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 67999999885321 1 1222 234555655444444444 4334456676665
No 359
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.12 Score=46.47 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
.+++.|+||+|.+|..++..|+..|. ++++++.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~ 40 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHY 40 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEec
Confidence 35899999999999999999999887 7666664
No 360
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.56 E-value=0.0061 Score=59.18 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc-CCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~-~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
.+++||+|+||+|++|..+...|..++.. ||.++..+...|+...-.+.. ....+..+. ..+ .+.++++|+||++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 35679999999999999999999888643 888887654334322111100 001111111 112 23479999999976
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 5
No 361
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.55 E-value=0.014 Score=47.89 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 59999999 9999999999999987 5999999864
No 362
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.54 E-value=0.028 Score=48.52 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=29.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
||.|+|+ |-+|+.++..|+..|+ .++.|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899999 9999999999999987 4899999874
No 363
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.034 Score=52.76 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------h
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l 112 (305)
.++|.|+||+|.+|..++..|+..|. +|+++++++ +.....++.... .++..+. .-+| .+++ +
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 35899999999999999999999998 899999865 222223333211 1222111 1112 2222 2
Q ss_pred CCCCEEEEcCCCCCCC--C-Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRKP--G-MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~--g-~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
...|++|.++|..... . .+. ...+..| +...+.+.+.+.+.. .+.|++++
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~is 143 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVG 143 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeC
Confidence 3689999999864211 1 111 1223333 445556666666543 35555554
No 364
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.53 E-value=0.0097 Score=53.63 Aligned_cols=99 Identities=24% Similarity=0.359 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCC--chh-------hhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT--PGV-------TADISHMDTNAVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~--~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al~~a 115 (305)
..||.|+|| |..|..++..|...|. .++|.++|++.+ ... ..++.+...... . ..+++++++++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~~ 98 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKGA 98 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhcC
Confidence 358999999 9999999999988876 238999999841 111 122222110011 1 12566889999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~ 168 (305)
|++|-+.+ +|+- + .+..+.+ +++.+++..+||...
T Consensus 99 dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e 133 (226)
T cd05311 99 DVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPE 133 (226)
T ss_pred CEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence 99999865 2331 1 1233333 367777788899753
No 365
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.025 Score=51.46 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=30.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+++.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999998 899999865
No 366
>PRK12742 oxidoreductase; Provisional
Probab=96.52 E-value=0.056 Score=47.66 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~ 81 (305)
.++|.|+||+|.+|..++..|+..|. ++++.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~ 39 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG 39 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 35899999999999999999999988 78877653
No 367
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.52 E-value=0.037 Score=49.28 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
+.++|.|+||+|++|++++..|++.|. ++++...
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 346899999999999999999999998 7766553
No 368
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.51 E-value=0.073 Score=47.76 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---H-------HH
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DA 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~a 111 (305)
+.++|.|+||+|.+|..++..|+..|. +++++|.+.. .....++.+.. .++..+. .-+|. + +.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346999999999999999999999997 8999987652 22223333221 1121111 11122 1 22
Q ss_pred hCCCCEEEEcCCCCCC--CCCchh---hHHHhhHHHHHHHHHHHH
Q 021932 112 LTGMDIVIIPAGVPRK--PGMTRD---DLFNINAGIVKTLCEGIA 151 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~--~g~~r~---d~~~~N~~i~~~i~~~I~ 151 (305)
+...|++|.++|.... ...+.. +.+..|+.....+.+.+.
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 130 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVA 130 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3457999999985321 122222 235566665555555543
No 369
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=96.51 E-value=0.038 Score=48.87 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=44.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC------HHHHhCCCCEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ------LEDALTGMDIVI 119 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d------~~~al~~aDiVI 119 (305)
|+|.|+||+|.+|..++..|+..+....+++.+.+.... .. ..++..+. .-++ ..+.+...|++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998875433677766644211 10 11111110 0111 223456899999
Q ss_pred EcCCCC
Q 021932 120 IPAGVP 125 (305)
Q Consensus 120 i~ag~~ 125 (305)
.++|..
T Consensus 73 ~~aG~~ 78 (235)
T PRK09009 73 NCVGML 78 (235)
T ss_pred ECCccc
Confidence 999975
No 370
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=96.51 E-value=0.025 Score=50.41 Aligned_cols=36 Identities=31% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+++.|+||+|.+|+.++..|+..|. +++++|.+.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 345899999999999999999999998 999999865
No 371
>PRK08589 short chain dehydrogenase; Validated
Probab=96.51 E-value=0.056 Score=49.26 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEe-cCCC---HHH-------HhC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LED-------ALT 113 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------al~ 113 (305)
.+++.|+||+|.+|..++..|+..|. +|+++++++ +.....++.+.. .++..+. .-++ .++ .+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999998 999999874 222223333221 1122111 1112 111 123
Q ss_pred CCCEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 114 GMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
..|++|.++|.....+ .+. ...+..|+. +.+.+.+.+.+. .+.|++++.
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS 141 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS 141 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence 5799999998743211 111 223344543 445555555543 356666654
No 372
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.50 E-value=0.039 Score=49.15 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
+++|.|+||+|.+|+.++..|++.|. ++++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 45899999999999999999999987 7777653
No 373
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.50 E-value=0.0067 Score=55.55 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEeCCCC--chhhhhhhcc--cC--CceEEEEecCCCHHH
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVNT--PGVTADISHM--DT--NAVVRGFLGQQQLED 110 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~---------~~el~L~D~~~~--~g~~~DL~~~--~~--~~~v~~~~~t~d~~~ 110 (305)
..||.|.|| |.-|..++.+|...+. .+.++++|.+-+ .+. .||... .. +.+-. ....++.+
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~--~~~~~L~e 100 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPE--RESGDLED 100 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcc--cccCCHHH
Confidence 358999999 9999999987776432 148999998751 111 112111 00 11111 11247899
Q ss_pred HhC--CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCCC
Q 021932 111 ALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPK 186 (305)
Q Consensus 111 al~--~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd--~lt~~~~~~~~~~s~~p~~ 186 (305)
+++ ++|+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.. -.++ +-.++.+ +-+
T Consensus 101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~G~ 161 (254)
T cd00762 101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--EGR 161 (254)
T ss_pred HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--CCC
Confidence 999 999988776544 2 235778899999999999999999987 4443 2223332 125
Q ss_pred cEEEee
Q 021932 187 RLLGVT 192 (305)
Q Consensus 187 kviG~t 192 (305)
.+|++.
T Consensus 162 ai~AtG 167 (254)
T cd00762 162 AIFASG 167 (254)
T ss_pred EEEEEC
Confidence 688874
No 374
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.50 E-value=0.019 Score=53.18 Aligned_cols=69 Identities=26% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC--CCCcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~--~~~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
+++||+|||. |.+|..++..|... ++ +|+ ++|.++.+ +.++.... ..... .+++++.+.++|+|+++
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~--g~~~~---~~~~eell~~~D~Vvi~ 74 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGL--RRPPP---VVPLDQLATHADIVVEA 74 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhc--CCCcc---cCCHHHHhcCCCEEEEC
Confidence 4579999998 99999999888763 34 655 77876522 12222111 00111 13567778999999999
Q ss_pred CC
Q 021932 122 AG 123 (305)
Q Consensus 122 ag 123 (305)
++
T Consensus 75 tp 76 (271)
T PRK13302 75 AP 76 (271)
T ss_pred CC
Confidence 75
No 375
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.017 Score=53.50 Aligned_cols=113 Identities=23% Similarity=0.269 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEE-ecCCCH---H-------HHh
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQL---E-------DAL 112 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~---~-------~al 112 (305)
.++|.|+||+|.+|..++..|+..|. +|+++++++. ...+.++... ..+..+ ..-+|. + +.+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999998 8999998752 2222233211 111111 111222 1 123
Q ss_pred CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEec
Q 021932 113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS 163 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~t 163 (305)
...|++|.++|..... ..+ -.+.+..|+.....+++.+..+- ..+.|+++|
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~is 142 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVS 142 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 5689999999964311 111 12345556555544444443321 235555555
No 376
>PLN02928 oxidoreductase family protein
Probab=96.49 E-value=0.012 Score=56.47 Aligned_cols=104 Identities=23% Similarity=0.199 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhh--hcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL--~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
...++|+|+|. |.+|+.+|..|...|. +|..+|..........+ ................++++.++.||+|+++
T Consensus 157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 34569999999 9999999999987787 99999985311111100 0000000000000123688999999999998
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
.... + + +-.++. .+.+.+..|.+++|+++
T Consensus 234 lPlt--~-~--------T~~li~--~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 234 CTLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCC--h-H--------hhcccC--HHHHhcCCCCeEEEECC
Confidence 6321 1 1 111111 24444556889999986
No 377
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=96.44 E-value=0.011 Score=53.60 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=60.7
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh--h-hhhhccc--------CCceEEEEecC----------CC
Q 021932 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV--T-ADISHMD--------TNAVVRGFLGQ----------QQ 107 (305)
Q Consensus 51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~--~-~DL~~~~--------~~~~v~~~~~t----------~d 107 (305)
|+||+||+|+++...|+..+...+|+++-+... .+. . ..+.+.. ...+++.+.+. .+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 689999999999998887765228888877541 111 1 1111110 13455554332 13
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
+.+..+.+|+||.+|+.-. ...+..++...|+..++++++...+.....++.+.|
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iST 135 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYIST 135 (249)
T ss_dssp HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEE
T ss_pred hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCcceEEecc
Confidence 4344489999999987431 122344567889999999999998655445555555
No 378
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.42 E-value=0.11 Score=46.79 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEe-cCCCHH---HH-------
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQLE---DA------- 111 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d~~---~a------- 111 (305)
.+++.|+||+|.+|..++..|+..|. .+++...+.. .....++... ..++..+. .-+|.+ +.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999997 7777766431 1122223221 11222111 112221 11
Q ss_pred hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932 112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN 164 (305)
+...|++|.++|..... ..+. ...+..|+. ..+.+.+.+.+....+.++++|.
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 23579999999864321 1111 223455643 34555666666555566665553
No 379
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.42 E-value=0.011 Score=56.61 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||+|+||+|++|.-+..+|..+++ ..+|+++-..+..|+.+.+.. ..+... .. +. ++++++|+||++.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~~-~~-~~~~~vD~vFla~p 75 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-EV-DS-FDFSQVQLAFFAAG 75 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-eC-Ch-HHhcCCCEEEEcCC
Confidence 47999999999999999999986543 347777765443344333222 122221 11 22 34789999999864
No 380
>PRK07023 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.023 Score=50.57 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+|||.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 36899999999999999999999997 899998865
No 381
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.41 E-value=0.028 Score=50.19 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+..||+|+|+ |-+|+.++..|+..|+ .++.++|.+.
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 3458999999 9999999999999997 4899999873
No 382
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.069 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.+.+.|+||+|.+|..++..|+.+|. +|++++.+.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~ 44 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRV 44 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 34899999999999999999999998 888888754
No 383
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.40 E-value=0.011 Score=56.74 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||+|+||+|++|..+...|..+++ ..++.++......|+..+... ..+..- ..+ .++++++|+||++++
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~p 78 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSAG 78 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECCC
Confidence 46999999999999999999987553 357777755443343332211 222221 123 356799999999875
No 384
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.39 E-value=0.045 Score=49.73 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=75.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC-------CCHHHHhCCCCE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-------QQLEDALTGMDI 117 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t-------~d~~~al~~aDi 117 (305)
+-+.|+||++-+|..+|..|+..|. .|+|..+.. ++..+.++.+....+..-.+... ....+.+...|+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 3578999999999999999999999 999999876 45555566631100100001000 123455678999
Q ss_pred EEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 021932 118 VIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV 166 (305)
Q Consensus 118 VIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNPv 166 (305)
.|..||...... .+...++..|++.+......+-.. ...+.||+++.=.
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA 142 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA 142 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence 999999754321 124557788887666655554322 2356788877543
No 385
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.39 E-value=0.018 Score=54.03 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
...||.|+|+ |.+|..++..|...|. +|.++|++.. ...+.++ . ..... ..++.+.++++|+||.+.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~~---~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPFH---LSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceeec---HHHHHHHhCCCCEEEECC
Confidence 4569999998 9999999999998886 9999998752 1122211 1 11111 124667889999999986
No 386
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.38 E-value=0.043 Score=45.38 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=29.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
||.|+|+ |.+|+.++..|+..|+ .++.++|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899999 9999999999999998 5899999874
No 387
>PRK08324 short chain dehydrogenase; Validated
Probab=96.38 E-value=0.032 Score=58.12 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.++|.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~ 456 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDE 456 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence 35899999999999999999999987 899999876
No 388
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.37 E-value=0.0036 Score=60.46 Aligned_cols=75 Identities=25% Similarity=0.296 Sum_probs=44.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
|.|+|+ |.||+.++..|++.+...+|++.|++..+ ..+.++ .......+.. .....++.+.++++|+||.|+|..
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999 99999999999988765699999997622 222222 1111111111 111123566789999999998743
No 389
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.36 E-value=0.037 Score=54.52 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
...+|+|+|. |.+|..++..+...|. +|+++|+++.+.... ..+ . .. . .+++++++++|+||.+.|.
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G--~~--v----~~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G--FR--V----MTMEEAAELGDIFVTATGN 277 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C--CE--e----cCHHHHHhCCCEEEECCCC
Confidence 4459999999 9999999999998887 899999976321111 011 1 11 1 1356889999999988642
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP 165 (305)
+ .++. .+.+....+.+++++++-+
T Consensus 278 ~---------------~vI~--~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 278 K---------------DVIT--AEHMEAMKDGAILANIGHF 301 (425)
T ss_pred H---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence 1 2222 1223333477899988744
No 390
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.069 Score=47.36 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=31.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+|++|.+|..++..|+..|. +|+++++++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 5899999999999999999999998 899999876
No 391
>PLN02503 fatty acyl-CoA reductase 2
Probab=96.34 E-value=0.053 Score=55.75 Aligned_cols=118 Identities=15% Similarity=0.113 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC--ch--hh-hhhhccc----------------CCceEEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT--PG--VT-ADISHMD----------------TNAVVRGF 102 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~--~g--~~-~DL~~~~----------------~~~~v~~~ 102 (305)
+.++|.|+||+||+|..++..|+..+ -+.+|+++.+... .+ .. .++.+.. ...++..+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 45799999999999999999888654 3568888877431 11 00 1111100 01234433
Q ss_pred ecC-C---------CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932 103 LGQ-Q---------QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (305)
Q Consensus 103 ~~t-~---------d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t 163 (305)
.+. + +++...++.|+||.+|+... ...+..+.+..|+....++++...+.. .+.++.+.|
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vST 268 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVST 268 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccC
Confidence 221 1 23333467999999997543 234455677889999999999887764 344444444
No 392
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.34 E-value=0.14 Score=45.98 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCHH------HHhCCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE------DALTGMD 116 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~------~al~~aD 116 (305)
.+++.|+|++|.+|..++..|+..|. +|+++|+++. .....++.... ..++..+. .-+|.+ +.+...|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 45899999999999999999999988 9999998752 22222233211 11222211 111221 1245799
Q ss_pred EEEEcCCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932 117 IVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 117 iVIi~ag~~~~-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t 163 (305)
++|.++|.... + ..+. ...+..|+. +.+.+.+.+.+.. .+.++++|
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~is 139 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVI 139 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEec
Confidence 99999986421 1 1111 233455554 4444555555443 34555554
No 393
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.32 E-value=0.018 Score=53.84 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
...||+|+|+ |.+|..++..|...|. +|.++|+++... ..+.... ...+. ..++.+.++++|+||.+...
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g-~~~~~----~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMG-LIPFP----LNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC-Ceeec----HHHHHHHhccCCEEEECCCh
Confidence 3469999999 9999999999998886 899999865211 1111111 11111 12466788999999998632
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCCc
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNS 168 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-tNPvd~ 168 (305)
. ++ + .+ .+....|+++++.+ ++|-.+
T Consensus 220 ~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 220 L---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred H---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence 1 11 1 11 23334567888877 588654
No 394
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.026 Score=49.82 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+|++|.+|+.++..|+..|. +|+++|+++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 4799999999999999999999998 999999876
No 395
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.30 E-value=0.016 Score=53.85 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=44.1
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
|||. |.+|..++..|+..|+ +|.++|+++.. ..++.... ... +.+..++++++|+||++..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~vp 61 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITMLP 61 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 5798 9999999999999998 99999987521 12222211 111 2356788999999999864
No 396
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.26 Score=43.97 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
.+++.|+||+|.+|.+++..|+..|. +|++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 35899999999999999999999998 7888754
No 397
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.036 Score=54.49 Aligned_cols=124 Identities=24% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh---hhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~---~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
+.++|.|+|+ |.+|..+|..|+..|. +|+++|.+..... ..+|... .++.+.+.. ..+...++|+||.+
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~-~~~~~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGEY-PEEFLEGVDLVVVS 75 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCc-chhHhhcCCEEEEC
Confidence 3469999999 8899999999999998 9999999752111 1222211 122222221 12446789999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCccHHHHHHHHHH
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNSTVPIAAEVFKK 179 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~lt~~~~~~~~~ 179 (305)
+|.+... ......-+.+++++.......... + ..+|-+| |==...+.++.+++..
T Consensus 76 ~g~~~~~-~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 76 PGVPLDS-PPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCC-HHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8864221 111112234566665554433322 2 3344454 4333455666666654
No 398
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.24 E-value=0.013 Score=56.08 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+.+||+|+||+|++|..+..+|..+.+ ..+|.++-.....|+...+.. ..+.... .+ +.++.++|+||++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~----~~~~v~~--~~-~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGG----KSVTVQD--AA-EFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECC----cceEEEe--Cc-hhhccCCCEEEECCC
Confidence 456999999999999999999988432 348888865444444333321 1233211 12 245688999999875
No 399
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.025 Score=49.78 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHH---HhC--CCCEEEE
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLED---ALT--GMDIVII 120 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~---al~--~aDiVIi 120 (305)
+++.|+|++|.+|+.++..|+..|. +|+++|.+.... .++..... ..+.. +....+.++ .+. ..|+||.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 4789999999999999999998887 899999865211 11221110 01111 111112222 122 4799999
Q ss_pred cCCCCCC---C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932 121 PAGVPRK---P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN 164 (305)
Q Consensus 121 ~ag~~~~---~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN 164 (305)
++|.... + ..+. ...+..|+.....+.+.+.++- ..+.+++++.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS 130 (222)
T PRK06953 77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS 130 (222)
T ss_pred CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence 9986421 1 1122 3346667766666666555432 2344554443
No 400
>PRK06123 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.079 Score=47.05 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=28.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+.|+|++|.+|+.++..|+..|. .+++.+...
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~ 36 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRN 36 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence 3689999999999999999999887 777777543
No 401
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.20 E-value=0.035 Score=53.06 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+..||.|||+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 3458999999 9999999999999997 4999999874
No 402
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.041 Score=47.54 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=59.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 126 (305)
|++.|+||+|.+|..++..|.+. . +|++++++.. ....|+.+... ++ ...+.+...|++|.++|...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~~---~~------~~~~~~~~id~lv~~ag~~~ 67 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPAS---IR------ALFEKVGKVDAVVSAAGKVH 67 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChHH---HH------HHHHhcCCCCEEEECCCCCC
Confidence 47999999999999999999877 4 8899987541 11223333210 00 01122347899999998642
Q ss_pred CC---CCchh---hHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932 127 KP---GMTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (305)
Q Consensus 127 ~~---g~~r~---d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t 163 (305)
.. ..+.. +.+..|+.....+.+...++- +.+.++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 11 12222 234455554445554444332 345555554
No 403
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.20 E-value=0.044 Score=50.26 Aligned_cols=68 Identities=26% Similarity=0.274 Sum_probs=43.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
++||+|+|++|.+|+.++..+...+-..-+.++|.+....... .. ..+.. .+|+++.++++|+||.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~----~~i~~---~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GA----LGVAI---TDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CC----CCccc---cCCHHHhccCCCEEEECC
Confidence 4699999988999999998887654333344578765211111 11 11221 347777788999999764
No 404
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.16 Score=45.28 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+.+.|+||++-+|..++..|++.|. +|+++++++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~ 39 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQ 39 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 345899999999999999999999998 899999876
No 405
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.19 E-value=0.069 Score=49.75 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=78.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEE----ecCCCHH-------HHhC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLE-------DALT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~~-------~al~ 113 (305)
+.|.|+|||.-+|.++|+.|+..|. .++++.... ++-.+.++.......++... +..++.+ ..+.
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 4788999999999999999999998 778877654 22222444433211112221 1111222 3457
Q ss_pred CCCEEEEcCCCCCCCC-Cc------hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 021932 114 GMDIVIIPAGVPRKPG-MT------RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 170 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g-~~------r~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt 170 (305)
+.|+.|..||+.+ .+ .+ ....++.| +-..+...+.+++.+ ++-|++++.....++
T Consensus 91 ~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~ 156 (282)
T KOG1205|consen 91 RVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP 156 (282)
T ss_pred CCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence 9999999999876 33 11 12233433 678899999999888 888888887776553
No 406
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.17 E-value=0.019 Score=56.33 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
....+|+|+|+ |.+|..++..|...|. .+|.++|++..+. .++.... ... .+. ..++.+++.++|+||.+.+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra--~~la~~~-g~~--~i~-~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERA--EDLAKEL-GGE--AVK-FEDLEEYLAEADIVISSTG 249 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHH--HHHHHHc-CCe--Eee-HHHHHHHHhhCCEEEECCC
Confidence 44569999999 9999999999988774 3899999865221 1122111 111 111 1356688899999999976
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST 169 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l 169 (305)
.+..- . + .+.++...... ...+++=+++|-|+=
T Consensus 250 s~~~i-i--------~----~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 250 APHPI-V--------S----KEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred CCCce-E--------c----HHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 54211 0 1 11122222111 245788889998874
No 407
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.15 Score=45.87 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG-~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.+++.|+||+| -+|..++..|+..|. +|++.|.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 35899999987 599999999999998 799999865
No 408
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.16 E-value=0.013 Score=55.73 Aligned_cols=75 Identities=24% Similarity=0.198 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--cCCceEEEEecCCCHHH-HhCCCCEEEEc
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLED-ALTGMDIVIIP 121 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~~-al~~aDiVIi~ 121 (305)
+++||+|+||+|+.|.-+..+|..++.+ |+.++...+..|..+.-.|. .....++.. ..|.++ ...+||+||++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence 3679999999999999999999988865 68888775544543322222 111223321 112222 24569999997
Q ss_pred C
Q 021932 122 A 122 (305)
Q Consensus 122 a 122 (305)
.
T Consensus 78 l 78 (349)
T COG0002 78 L 78 (349)
T ss_pred c
Confidence 4
No 409
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.16 E-value=0.39 Score=43.29 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
+.++|.|+||++.+|..++..|+..|. .|++.+.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~ 40 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN 40 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence 345899999999999999999999998 7888754
No 410
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.15 E-value=0.039 Score=49.76 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999998 899999875
No 411
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.15 E-value=0.051 Score=51.43 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
.+||+|||. |.+|.+++..|...|+ ++++.+....... ..+.... +.. . +..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence 358999998 9999999999999887 6666554321111 1111111 121 1 3568889999999986
No 412
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=96.15 E-value=0.073 Score=47.30 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=27.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD 79 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D 79 (305)
+.+.|+|++|.+|..++..|+..|. ++++..
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~ 34 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC 34 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence 3689999999999999999999997 777754
No 413
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.051 Score=55.82 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----- 112 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----- 112 (305)
.+.+++.|+||+|.+|..++..|+..|. +|+++++++. .....++... ..++..+.. -+| .++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3346899999999999999999999998 8999998752 2222223221 112222111 112 22233
Q ss_pred --CCCCEEEEcCCCCCCCC--------CchhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEec
Q 021932 113 --TGMDIVIIPAGVPRKPG--------MTRDDLFNINAGIVK----TLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 113 --~~aDiVIi~ag~~~~~g--------~~r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~t 163 (305)
...|++|.++|...... ++-...+..|+.... .+.+.+.+.. .+.|+++|
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~is 508 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR-FGHVVNVS 508 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEEC
Confidence 26899999998642211 112234555655444 4444444443 34555554
No 414
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.11 E-value=0.024 Score=53.90 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
...+++|||+ |.+|...+..+.......+|.++|++. +...+.++.+. ...+.. ..+.++++++||+|+.+.
T Consensus 127 ~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 127 DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence 3568999998 999998776666544568999999986 23333444432 222333 246789999999999875
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
.
T Consensus 201 ~ 201 (325)
T TIGR02371 201 P 201 (325)
T ss_pred C
Confidence 3
No 415
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.087 Score=48.23 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=56.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHH------hCCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------LTGM 115 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a------l~~a 115 (305)
.+.|+|+ |.+|..++..|. .|. +|+++|+++. .....++... ..++..+. .-+| .++. +...
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4566676 899999999985 676 9999998752 1122223221 11222111 1112 2222 2468
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh
Q 021932 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153 (305)
Q Consensus 116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~ 153 (305)
|++|.+||.... ..+-.+.+..|+.....+.+.+.+.
T Consensus 78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~ 114 (275)
T PRK06940 78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKV 114 (275)
T ss_pred CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999997521 2334556677776655555555443
No 416
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.11 E-value=0.025 Score=53.67 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
...+++|||+ |..|...+..+....-+.+|.++|+++. ...+.++.+.. ...+..+ .+++++++++|+||.+.
T Consensus 126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 126 DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVT 200 (325)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEcc
Confidence 3458999998 9999887776654434579999999762 22333343221 1233332 46788999999999875
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
+
T Consensus 201 ~ 201 (325)
T PRK08618 201 N 201 (325)
T ss_pred C
Confidence 4
No 417
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.10 E-value=0.033 Score=56.38 Aligned_cols=98 Identities=23% Similarity=0.344 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
..++|+|+|. |.+|..+|..|...|. +|+.||.......+.++ . +.. ..++++.+++||+|+++...
T Consensus 137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~lPl 203 (525)
T TIGR01327 137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VEL---VDDLDELLARADFITVHTPL 203 (525)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---cCCHHHHHhhCCEEEEccCC
Confidence 3468999999 9999999999987787 99999974321111111 1 111 13578899999999998642
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS 168 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~ 168 (305)
. + +++ .++. .+.+....|.+++|+++ .-+|.
T Consensus 204 t--~-~T~--------~li~--~~~l~~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 204 T--P-ETR--------GLIG--AEELAKMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred C--h-hhc--------cCcC--HHHHhcCCCCeEEEEcCCCceeCH
Confidence 1 1 111 1111 13444445788998886 44553
No 418
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.09 E-value=0.03 Score=53.27 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
..++|+|+|+ |..|...+..+....-+.+|.+++++.. +..+.++.+.. ...+.. ..|++++++++|+||.+.
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEee
Confidence 3459999998 9999988877765333569999998762 33333443221 122332 246789999999998875
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
.
T Consensus 206 ~ 206 (330)
T PRK08291 206 P 206 (330)
T ss_pred C
Confidence 4
No 419
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.06 E-value=0.046 Score=52.30 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+..||.|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 3458999999 9999999999999997 5999999874
No 420
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.05 E-value=0.091 Score=46.72 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=28.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~ 82 (305)
+++.|+||+|.+|..++..|+..|. +++++ +++.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~ 39 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSR 39 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 4899999999999999999999987 76664 4443
No 421
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.04 E-value=0.062 Score=47.56 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+.+||.|||+ |.||...+..|...|. +|++++.... ....++.+. ..+......-. ++.+.++|+||.+.+
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~-~~l~~l~~~---~~i~~~~~~~~-~~~l~~adlViaaT~ 79 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELT-ENLVKLVEE---GKIRWKQKEFE-PSDIVDAFLVIAATN 79 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCC-HHHHHHHhC---CCEEEEecCCC-hhhcCCceEEEEcCC
Confidence 4469999999 9999999999998886 8999975322 222233322 11222111112 367899999888754
No 422
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.03 E-value=0.033 Score=56.38 Aligned_cols=97 Identities=23% Similarity=0.299 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
..++|+|+|. |.+|+.+|..|...|. +|+.||.........++ .+... ++++.++.||+|+++...
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~lP~ 204 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHTPL 204 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEccCC
Confidence 4569999999 9999999999988887 99999975321111111 11211 467889999999998642
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS 168 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~ 168 (305)
.. +++ .++ | . +.+....|.+++|+++ ..+|.
T Consensus 205 t~---~t~-~li--~----~---~~l~~mk~ga~lIN~aRG~~vde 237 (526)
T PRK13581 205 TP---ETR-GLI--G----A---EELAKMKPGVRIINCARGGIIDE 237 (526)
T ss_pred Ch---Hhh-cCc--C----H---HHHhcCCCCeEEEECCCCceeCH
Confidence 21 111 111 2 1 2344445889999986 44553
No 423
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=96.02 E-value=0.11 Score=45.80 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=27.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
.+.|+||+|.+|..++..|+..|. +++++..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r 32 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG 32 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 578999999999999999999998 8888876
No 424
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.01 E-value=0.058 Score=48.49 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..||.|+|+ |-+|+.++..|+..|+ .++.|+|.+.
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 458999999 9999999999999997 5999999764
No 425
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.00 E-value=0.082 Score=51.97 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHH-------HhCCCCE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLED-------ALTGMDI 117 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~-------al~~aDi 117 (305)
.+++.|+|++|.+|..++..|+..|. +++++|.........++........+.. +....+.++ .+...|+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~ 287 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI 287 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence 35899999999999999999999987 8999988542111122221110011111 100011111 1236899
Q ss_pred EEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932 118 VIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (305)
Q Consensus 118 VIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN 164 (305)
||.++|..... .++ ....+..|+.....+.+.+... .+.+.|+++|.
T Consensus 288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 99999865321 111 2334566777777777766652 24466666653
No 426
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=96.00 E-value=0.25 Score=44.71 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=27.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
.+.|+||+|.+|..++..|++.|. +|++.+.
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~ 33 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYH 33 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcC
Confidence 688999999999999999999998 8888754
No 427
>PRK08017 oxidoreductase; Provisional
Probab=95.99 E-value=0.033 Score=49.78 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=30.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++|.|+||+|.+|..++..|++.|. +|++++++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3799999999999999999999987 889998865
No 428
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.96 E-value=0.035 Score=52.23 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
...+++|||+ |..|...+..+..-..+++|.++|++. +...+.++.+.. ...+... .+.++++++||+|+.+.
T Consensus 116 da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT 190 (301)
T PRK06407 116 NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT 190 (301)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence 3459999998 999998887777655568999999986 344444555421 2234432 46789999999999764
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
+
T Consensus 191 ~ 191 (301)
T PRK06407 191 N 191 (301)
T ss_pred C
Confidence 3
No 429
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.96 E-value=0.1 Score=48.61 Aligned_cols=78 Identities=29% Similarity=0.400 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHH------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA------ 111 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a------ 111 (305)
+.+++.|+||+|.+|..++..|+..|. +|++.|... ....+.++... ..++..+.. -+| .++.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999999999998 899998753 11222233321 122222111 112 1111
Q ss_pred hCCCCEEEEcCCCCC
Q 021932 112 LTGMDIVIIPAGVPR 126 (305)
Q Consensus 112 l~~aDiVIi~ag~~~ 126 (305)
+...|++|.++|...
T Consensus 87 ~g~iD~li~nAG~~~ 101 (306)
T PRK07792 87 LGGLDIVVNNAGITR 101 (306)
T ss_pred hCCCCEEEECCCCCC
Confidence 246899999999754
No 430
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.96 E-value=0.032 Score=55.54 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
..++|+|+|. |.+|..+|..+...|. +|..+|+++... .+.. +. .+. .+++++++.+|+||.+.|
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~G-----~~~----~~leell~~ADIVI~atG 318 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--EG-----YQV----VTLEDVVETADIFVTATG 318 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--cC-----cee----ccHHHHHhcCCEEEECCC
Confidence 4469999999 9999999999988887 899998876322 1111 11 111 146788999999999865
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP 165 (305)
.+ .++. .+.+....|.+++++++-.
T Consensus 319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 32 1111 1234444588999998754
No 431
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.94 E-value=0.023 Score=54.31 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~ 80 (305)
++||+|+||+|.+|..++..|...+...-+.+.|.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~ 36 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR 36 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence 47999999999999999998887765433455663
No 432
>PRK06483 dihydromonapterin reductase; Provisional
Probab=95.94 E-value=0.11 Score=45.95 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
++++.|+||+|.+|..++..|+..|. +|++.|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 34799999999999999999999998 999999865
No 433
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=95.93 E-value=0.12 Score=45.63 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=62.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCCH---HHH-------hCC
Q 021932 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTG 114 (305)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~~ 114 (305)
|.|+||+|.+|..++..|++.|. ++++++... ......++.+.. .++..+.. -+|. +++ +..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA 76 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46999999999999999999998 888887643 112222333221 12222211 1121 122 234
Q ss_pred CCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 021932 115 MDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPV 166 (305)
Q Consensus 115 aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tNPv 166 (305)
.|.+|.++|...... . +....+..|+.....+.+.+ .+..+.+.++++|...
T Consensus 77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~ 138 (239)
T TIGR01831 77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS 138 (239)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence 689999988643221 1 22345666766555554432 2223455666666543
No 434
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.92 E-value=0.023 Score=54.97 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=43.0
Q ss_pred HhhhCCCcccc-ccccccccccccCCC------CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 16 AAHLHPPTLQI-EGESSGLGRMDCRAK------GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.|--.|-+++ +.|.--|+|+..-+. ...+..||.|+|+ |-+|+.++..|+..|+ .+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 4 SEHTLSPFMQLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred cccCCCCCCCCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 33444444445 333334555543321 2223458999999 9999999999999987 4999999874
No 435
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.92 E-value=0.1 Score=49.59 Aligned_cols=94 Identities=30% Similarity=0.369 Sum_probs=60.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+...++++|+|. |.+|+.+|..+. ++.-+|+.+|..+. .+..+... .+.+ ++++.++.||+|++.+
T Consensus 143 ~l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~~~------~~y~----~l~ell~~sDii~l~~ 208 (324)
T COG1052 143 DLRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKELG------ARYV----DLDELLAESDIISLHC 208 (324)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCC-hHHHhhcC------ceec----cHHHHHHhCCEEEEeC
Confidence 455679999998 999999999987 44449999998652 11111111 1211 3678999999999976
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
..- + ++|. + -|. +.+++-.|.+++||++
T Consensus 209 Plt--~-~T~h-L--in~-------~~l~~mk~ga~lVNta 236 (324)
T COG1052 209 PLT--P-ETRH-L--INA-------EELAKMKPGAILVNTA 236 (324)
T ss_pred CCC--h-HHhh-h--cCH-------HHHHhCCCCeEEEECC
Confidence 321 1 1211 1 121 3344556889999886
No 436
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.90 E-value=0.036 Score=54.49 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.+..+|+|+|+ |.+|..++..|...|. .+|.++|++..+. .++.... ...+.. ..++.+++.++|+||.+.|
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra--~~la~~~-g~~~~~---~~~~~~~l~~aDvVI~aT~ 251 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERA--EELAEEF-GGEAIP---LDELPEALAEADIVISSTG 251 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHH--HHHHHHc-CCcEee---HHHHHHHhccCCEEEECCC
Confidence 34569999998 9999999998887774 4889999865221 1122211 011111 1355678899999999876
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCCcc
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST 169 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd~l 169 (305)
.+... . +.+.++.. +.+. ....+++=+++|-|+=
T Consensus 252 s~~~~-i--------~~~~l~~~---~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 252 APHPI-I--------GKGMVERA---LKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred CCCcE-E--------cHHHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence 55211 1 11111111 1111 2457888889998874
No 437
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.86 E-value=0.04 Score=51.84 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
...+|+|+|+ |..|...+..+.. .++ .+|.++|++. +...+.++... ...+. ..+.++++.++|+||.+
T Consensus 124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVita 195 (304)
T PRK07340 124 PPGDLLLIGT-GVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTA 195 (304)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEc
Confidence 4569999998 9999999988865 454 6999999976 23333444321 11222 13577899999999997
Q ss_pred CC
Q 021932 122 AG 123 (305)
Q Consensus 122 ag 123 (305)
..
T Consensus 196 T~ 197 (304)
T PRK07340 196 TT 197 (304)
T ss_pred cC
Confidence 64
No 438
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.85 E-value=0.04 Score=48.53 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
-..++|+|||-+.-||..++.+|++.+- .|.++|++. .....-.+.|..+ ..+.. +.++.+.++.||+||.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~~--~~~l~~~~~~ADIVIsA 133 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTDE--EAMTLDCLSQSDVVITG 133 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccch--hhHHHHHhhhCCEEEEc
Confidence 3456999999988999999999998886 899999865 1111111223211 00000 11256788999999999
Q ss_pred CCCC
Q 021932 122 AGVP 125 (305)
Q Consensus 122 ag~~ 125 (305)
+|.+
T Consensus 134 vG~~ 137 (197)
T cd01079 134 VPSP 137 (197)
T ss_pred cCCC
Confidence 9866
No 439
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.82 E-value=0.041 Score=53.39 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
..++|+|||. |.||+.+|..|...|. +|..+|..... . .. ... + .++++.++.||+|++...
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~--~~-----~~~-~---~~L~ell~~sDiI~lh~P 176 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R--GD-----EGD-F---RSLDELVQEADILTFHTP 176 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----ccc-c---CCHHHHHhhCCEEEEeCC
Confidence 4559999999 9999999999998888 99999963210 0 00 011 1 257788899999998654
No 440
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.82 E-value=0.028 Score=53.07 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=45.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
..+++|+|+ |..+...+..+.. .+ +.+|.++|++. ++..+.++.+ . ...+... .+.++++++||+|+.+.
T Consensus 128 ~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred CceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence 348999998 9999988876665 55 78999999976 3444556665 2 3345443 46889999999988764
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
.
T Consensus 201 ~ 201 (313)
T PF02423_consen 201 P 201 (313)
T ss_dssp -
T ss_pred C
Confidence 3
No 441
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.79 E-value=0.11 Score=41.71 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=39.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCchhhhhhhcccCCce-EEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~~g~~~DL~~~~~~~~-v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
||+|+|++|.+|..++..|...+.+ +++.+ +.++..+......+...... ...+. ..+++ ..++|+||++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence 6899998799999999888886433 45444 65432332221122110000 11111 12332 358999999863
No 442
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.77 E-value=0.085 Score=47.99 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..||.|+|+ |-+|+.++..|+..|+ .+|.++|.+.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 458999999 9999999999999986 5999999875
No 443
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.77 E-value=0.04 Score=47.42 Aligned_cols=56 Identities=30% Similarity=0.503 Sum_probs=44.4
Q ss_pred CCCCEEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 44 SPGFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 44 ~~~~KI~IIGaaG~-VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
....||.|+|+ |. +|..++..|...+. +|.++++.. .++++.+++||+||.+.
T Consensus 42 l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 42 LAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence 44569999999 86 59989999988887 788887531 24567899999999998
Q ss_pred CCC
Q 021932 123 GVP 125 (305)
Q Consensus 123 g~~ 125 (305)
+.+
T Consensus 96 ~~~ 98 (168)
T cd01080 96 GKP 98 (168)
T ss_pred CCC
Confidence 765
No 444
>PRK05599 hypothetical protein; Provisional
Probab=95.77 E-value=0.66 Score=41.55 Aligned_cols=116 Identities=12% Similarity=0.209 Sum_probs=63.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---H-------HHHhC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDALT 113 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~~al~ 113 (305)
|.+.|+||++-+|..++..|+ .|. .|++.++++ ++..+.++.... ...+..+. .-.| . .+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 358899999999999999988 465 899999865 233333443321 11122111 0011 1 12234
Q ss_pred CCCEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932 114 GMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPV 166 (305)
Q Consensus 114 ~aDiVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tNPv 166 (305)
..|++|.++|...... .+. .+.+..|. .+.+.+.+.+.+...++.|+++|.-.
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~ 139 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA 139 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 6899999998643211 111 12223332 33445556665544456677766533
No 445
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=95.75 E-value=0.033 Score=52.09 Aligned_cols=96 Identities=17% Similarity=0.301 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
.++|+.||- |.+|++++..|+..|+ .|+.||++. ....++.+.. .++. ..+.|..+++|+||.+.+.|
T Consensus 35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~G--a~v~-----~sPaeVae~sDvvitmv~~~ 102 (327)
T KOG0409|consen 35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAG--ARVA-----NSPAEVAEDSDVVITMVPNP 102 (327)
T ss_pred cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhc--hhhh-----CCHHHHHhhcCEEEEEcCCh
Confidence 469999998 9999999999999999 999999864 3344555543 2232 23568899999999987644
Q ss_pred C----------------CCCCch-hhHHHhhHHHHHHHHHHHHHh
Q 021932 126 R----------------KPGMTR-DDLFNINAGIVKTLCEGIAKC 153 (305)
Q Consensus 126 ~----------------~~g~~r-~d~~~~N~~i~~~i~~~I~~~ 153 (305)
. ++|..- .|.-...-...+++.+.+...
T Consensus 103 ~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~ 147 (327)
T KOG0409|consen 103 KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK 147 (327)
T ss_pred HhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence 1 112111 233334456677888887754
No 446
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.71 E-value=0.045 Score=53.20 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
..++|+|||. |.||+.++..+...|. +|+.+|..... . .. ... + .++++.++.||+|++...
T Consensus 115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~~-----~~~-~---~~l~ell~~aDiV~lh~P 176 (381)
T PRK00257 115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--EG-----DGD-F---VSLERILEECDVISLHTP 176 (381)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----Ccc-c---cCHHHHHhhCCEEEEeCc
Confidence 3458999999 9999999999998888 99999974311 0 00 011 1 257788899999999764
No 447
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.71 E-value=0.021 Score=54.63 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=45.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
||+|+||+|++|.-++..|..+++ ..+++++-.....|....+.. ..+... ..+ .++++++|+||++.|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g 70 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAG 70 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCC
Confidence 689999999999999999988554 347777755443333333221 122221 113 256799999999876
No 448
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.71 E-value=0.16 Score=47.57 Aligned_cols=118 Identities=16% Similarity=0.279 Sum_probs=74.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEE-ecC----------C
Q 021932 40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF-LGQ----------Q 106 (305)
Q Consensus 40 ~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~-~~t----------~ 106 (305)
+..+.....|.|+||++-+|..+|+.+++.+- .+++.|+++ ....+..+.+.. .++.+ ..- .
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHH
Confidence 44555666899999977899999999999987 999999987 222223333211 11110 000 1
Q ss_pred CHHHHhCCCCEEEEcCCCC-CCCC--Cchhh---HHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932 107 QLEDALTGMDIVIIPAGVP-RKPG--MTRDD---LFNIN----AGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 107 d~~~al~~aDiVIi~ag~~-~~~g--~~r~d---~~~~N----~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
..++...+.|++|..||+. .++. .++.+ .++.| .-+++.+.+.+.+.+ ++.|+.++
T Consensus 107 ~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~Ia 172 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIA 172 (300)
T ss_pred HHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEeh
Confidence 2345667999999999963 3332 22222 12233 457888999998765 55555554
No 449
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.70 E-value=0.047 Score=51.43 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
...++|+|+|- |.+|+.+|..+...|. +|+.+|..... + . .. ... .++++.++.||+|+++..
T Consensus 120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~-~~--~~~---~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-G-IS--SIY---MEPEDIMKKSDFVLISLP 182 (303)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-C-cc--ccc---CCHHHHHhhCCEEEECCC
Confidence 34569999998 9999999988877787 99999975311 0 0 00 001 257788999999999863
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST 169 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~l 169 (305)
.. + +++. ++ | .+.+....|.+++|+++ .++|.-
T Consensus 183 ~t--~-~T~~-li--~-------~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 183 LT--D-ETRG-MI--N-------SKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred CC--c-hhhc-Cc--C-------HHHHhcCCCCeEEEECCCccccCHH
Confidence 21 1 1111 11 1 23344445889999996 667653
No 450
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.70 E-value=0.12 Score=47.22 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..||+|+|+ |.+|+.++..|+..|+ .++.++|-+.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 458999999 9999999999999997 5999999864
No 451
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.69 E-value=0.056 Score=51.06 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 121 (305)
...+|+|||+ |.+|...+..+.. .+ ..+|.++|+++ +...+.++.+. ...+... .+.++++++||+|+.+
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~a 196 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCA 196 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEe
Confidence 4569999998 9999999876554 44 46999999876 23333444331 1123332 3567899999999665
Q ss_pred CC
Q 021932 122 AG 123 (305)
Q Consensus 122 ag 123 (305)
.+
T Consensus 197 T~ 198 (314)
T PRK06141 197 TL 198 (314)
T ss_pred eC
Confidence 43
No 452
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.65 E-value=0.029 Score=53.08 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCC-CCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~-~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.++|+| ||+|.||..+...|.++++ .++++|++.. ...|+...+.. ..+.... .+ ++++++.|++++ +|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~-l~--~~~f~~vDia~f-ag 73 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIA-PE--EVEWADFNYVFF-AG 73 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEE-CC--ccCcccCCEEEE-cC
Confidence 358999 9999999999999988885 6899999886 34443332221 2333221 11 357899999999 65
No 453
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.63 E-value=0.31 Score=46.55 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=79.8
Q ss_pred ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecC
Q 021932 27 EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQ 105 (305)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t 105 (305)
|+-.-.|+-.--... .+..+|+|+|+ |-+|....+.+...+. +|+.+|+++. ...+.+|.- ..-+. .. .
T Consensus 150 CaGiT~y~alk~~~~--~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGA---d~~i~-~~-~ 219 (339)
T COG1064 150 CAGITTYRALKKANV--KPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGA---DHVIN-SS-D 219 (339)
T ss_pred cCeeeEeeehhhcCC--CCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCC---cEEEE-cC-C
Confidence 655544544333222 22359999999 9888888888777885 9999999763 222333321 11111 11 1
Q ss_pred CCHHHHhCC-CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-CccHHH-HHHHHHHhCC
Q 021932 106 QQLEDALTG-MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NSTVPI-AAEVFKKVGT 182 (305)
Q Consensus 106 ~d~~~al~~-aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv-d~lt~~-~~~~~~~~s~ 182 (305)
.|..+++++ +|+||.|++ + .-+.++.+.+ .+++.++.+.+|- ..+..+ ...+ -
T Consensus 220 ~~~~~~~~~~~d~ii~tv~-~---------------~~~~~~l~~l---~~~G~~v~vG~~~~~~~~~~~~~~l-----i 275 (339)
T COG1064 220 SDALEAVKEIADAIIDTVG-P---------------ATLEPSLKAL---RRGGTLVLVGLPGGGPIPLLPAFLL-----I 275 (339)
T ss_pred chhhHHhHhhCcEEEECCC-h---------------hhHHHHHHHH---hcCCEEEEECCCCCcccCCCCHHHh-----h
Confidence 233344443 999999986 3 1133333333 4788999999994 332211 1111 1
Q ss_pred CCCCcEEEe---eehhhHHHHHHH
Q 021932 183 YDPKRLLGV---TMLDVVRANTFV 203 (305)
Q Consensus 183 ~p~~kviG~---t~Lds~R~~~~l 203 (305)
+...+|.|+ +.-|+..+-.+.
T Consensus 276 ~~~~~i~GS~~g~~~d~~e~l~f~ 299 (339)
T COG1064 276 LKEISIVGSLVGTRADLEEALDFA 299 (339)
T ss_pred hcCeEEEEEecCCHHHHHHHHHHH
Confidence 345788898 345544444433
No 454
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.62 E-value=0.057 Score=51.24 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
..+++|||+ |..|...+..|....-+.+|.+++++.. ...+.++.+.. ...+.. ..++++++++||+|+.+.+
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence 458999998 9999998888864333469999999763 33334443221 122322 2467889999999999754
No 455
>PRK06484 short chain dehydrogenase; Validated
Probab=95.60 E-value=0.085 Score=52.66 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.+.+.|+||++.+|..++..|+..|. .|+++|++.
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~ 39 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNV 39 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 34788999999999999999999998 899999865
No 456
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.59 E-value=0.1 Score=46.03 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..||.|+|+ |-+|+.++..|+..|+ .+|.++|.+.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 358999999 8899999999999998 4899999764
No 457
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.59 E-value=0.0068 Score=51.90 Aligned_cols=45 Identities=33% Similarity=0.311 Sum_probs=34.6
Q ss_pred cccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 34 GRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 34 ~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..+.+.+ ...++.||+|+|+ |.||...+..+...|. +++.+|...
T Consensus 9 ~~~~~~~-~~~~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~ 53 (168)
T PF01262_consen 9 GMLLGGP-GGVPPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP 53 (168)
T ss_dssp SHEECTT-TEE-T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred ceeccCC-CCCCCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence 3344444 6777889999998 9999999999999998 999999865
No 458
>PRK06484 short chain dehydrogenase; Validated
Probab=95.59 E-value=0.25 Score=49.29 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEE-EecCCCHHHH-------hCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGM 115 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~t~d~~~a-------l~~a 115 (305)
.+++.|+||+|.+|..++..|+..|. +|+++|+++. .....++... ...+.. +....+.++. +...
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDE--HLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc--eeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999997 8999998651 1111111110 001111 1000112222 2457
Q ss_pred CEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932 116 DIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP 165 (305)
Q Consensus 116 DiVIi~ag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP 165 (305)
|++|.+||... .+ ..+ ....+..|+.....+.+.+..+- ..+.|+++|.-
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~ 402 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI 402 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence 99999999742 11 112 23345666665555555544432 34667777653
No 459
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.59 E-value=0.17 Score=52.05 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=82.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCH---H-HHhCCCCEEEEc
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP 121 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~-~al~~aDiVIi~ 121 (305)
..+|.|+|. |.+|+.++..|..+++ +++++|.|+.. +..+.+.. .+-+.+ ..++. + ..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence 468999999 9999999999998888 99999998621 12222221 122222 11232 1 124689999998
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHH
Q 021932 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN 200 (305)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv-~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~ 200 (305)
.+.. +.| ..++..+++..|+..++. +.||.+. +.+++. | .+.|+-=+..-+.++-
T Consensus 472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~-G--a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVEA------HELLQA-G--VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhC-C--CCEEEccHHHHHHHHH
Confidence 5311 223 345666778889876554 4566543 233433 3 2445433433344555
Q ss_pred HHHHHHhCCCCccee
Q 021932 201 TFVAEVLGLDPREVD 215 (305)
Q Consensus 201 ~~la~~l~v~~~~V~ 215 (305)
...=..+|++++++.
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 555577788887774
No 460
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.58 E-value=0.078 Score=45.33 Aligned_cols=56 Identities=30% Similarity=0.486 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
+.+||+|||.++.||..++.+|..++. .+.+++.+ +.++++.++.||+||.++|.
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGK 89 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSS
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeecc
Confidence 345999999988999999999998865 55555432 23567888999999999986
Q ss_pred C
Q 021932 125 P 125 (305)
Q Consensus 125 ~ 125 (305)
|
T Consensus 90 ~ 90 (160)
T PF02882_consen 90 P 90 (160)
T ss_dssp T
T ss_pred c
Confidence 5
No 461
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.13 Score=47.24 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi 120 (305)
++||+|.||+|.||+.+...+.+.+...=+..+|.....-.-.|..+......+... .+.|+.....++|++|=
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~ID 75 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLID 75 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEE
Confidence 679999999999999999999887744344556665411111122221111111111 12234566788888775
No 462
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.57 E-value=0.046 Score=52.39 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhh-hh-c-----ccC-CceEEEEecCCCHHHHhCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-IS-H-----MDT-NAVVRGFLGQQQLEDALTGM 115 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~D-L~-~-----~~~-~~~v~~~~~t~d~~~al~~a 115 (305)
+++||+|+||+|++|+.++..|..++.. ||++++..+ ..|+... +. + ... ...+... . .+. +.++++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~-~-~~~-~~~~~~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVV-S-TDP-EAVDDV 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcChhhcCCcccccccccccccccccccceEEE-e-CCH-HHhcCC
Confidence 3579999999999999999988877654 888884433 2332221 10 1 000 1122221 1 243 567899
Q ss_pred CEEEEcC
Q 021932 116 DIVIIPA 122 (305)
Q Consensus 116 DiVIi~a 122 (305)
|+|+.+.
T Consensus 78 DvVf~a~ 84 (349)
T PRK08664 78 DIVFSAL 84 (349)
T ss_pred CEEEEeC
Confidence 9998864
No 463
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.55 E-value=0.11 Score=46.22 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
.+||.|||+ |.+|..-+..|+..|- .|.+++.+.. ....++... .++.......+ .+.++++|+||.+.+
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATD 78 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCC
Confidence 349999999 9999999999998887 8999987532 222233322 23443322323 367899999998854
No 464
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.51 E-value=0.2 Score=47.71 Aligned_cols=125 Identities=16% Similarity=0.312 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEEeCCC-Cchhhhhhhcc------c--------CCceEEE
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKIN----P-LVSVLHLYDVVN-TPGVTADISHM------D--------TNAVVRG 101 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~----~-~~~el~L~D~~~-~~g~~~DL~~~------~--------~~~~v~~ 101 (305)
+...+.||+|||+ |+=|+++|..+... + +..+|...-..+ ..+...-|.+. . ...++..
T Consensus 17 ~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 17 AERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 4455679999998 99999999877643 1 223455444333 23321111111 0 1123333
Q ss_pred EecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-----cHHHHHH
Q 021932 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-----TVPIAAE 175 (305)
Q Consensus 102 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~-----lt~~~~~ 175 (305)
.+|+.++++|||++|+.. | .+.+.+++++|..+- |++..|-.+.=++. -.-++|+
T Consensus 96 ---v~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~ 156 (372)
T KOG2711|consen 96 ---VPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQ 156 (372)
T ss_pred ---cchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHH
Confidence 468999999999999974 2 234556666776664 55555444322221 0112345
Q ss_pred HHHHhCCCCCC
Q 021932 176 VFKKVGTYDPK 186 (305)
Q Consensus 176 ~~~~~s~~p~~ 186 (305)
.+.+..|.|-.
T Consensus 157 iI~~~lgI~~~ 167 (372)
T KOG2711|consen 157 IIHRALGIPCS 167 (372)
T ss_pred HHHHHhCCCce
Confidence 55556676655
No 465
>PRK07041 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.089 Score=46.22 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=59.7
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec----CCCHHHHhC---CCCEEEEc
Q 021932 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDALT---GMDIVIIP 121 (305)
Q Consensus 51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~---~aDiVIi~ 121 (305)
|+||+|.+|..++..|++.|. +|++++++. ......++.. ...+..+.. ..++.++++ ..|++|.+
T Consensus 2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 899999999999999999998 899999865 1112222221 111221111 112333333 47999999
Q ss_pred CCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 122 AGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 122 ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
+|...... +.-.+.+..|+.....+.+. ......+.+++++
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~-~~~~~~g~iv~~s 123 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARA-ARIAPGGSLTFVS 123 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhh-hhhcCCeEEEEEC
Confidence 98642211 11233455666666666652 2223344455443
No 466
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.48 E-value=0.061 Score=52.06 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEE
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi 120 (305)
.+.++.||+|+|+ |.+|...+..+...|. +|..+|++..+. ..+.... ...+.. .....++.+.++++|+||.
T Consensus 163 ~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 163 PGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCCEEEE
Confidence 3446678999999 9999999999998887 799999865211 1111110 111111 1111346678899999999
Q ss_pred cCCCC
Q 021932 121 PAGVP 125 (305)
Q Consensus 121 ~ag~~ 125 (305)
+++.+
T Consensus 237 a~~~~ 241 (370)
T TIGR00518 237 AVLIP 241 (370)
T ss_pred ccccC
Confidence 98654
No 467
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=95.47 E-value=0.16 Score=48.63 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCcEEEEEeCCCCc--h-hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 59 GQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 59 Gs~la~~L~~~~~~~el~L~D~~~~~--g-~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
|..+|..|+..|+ +|+++|+++.. . ....+... .++. +++..+++++||+||++.
T Consensus 32 G~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~---asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 32 GSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV---VSDDAEAAKHGEIHILFT 89 (342)
T ss_pred HHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE---eCCHHHHHhCCCEEEEEC
Confidence 7788989999998 99999987621 1 11112211 1332 235568889999999985
No 468
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.46 E-value=0.074 Score=50.51 Aligned_cols=93 Identities=23% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
...++|+|||. |.+|..+|..+. .-|. +|+.+|..... ... ... .++. .++++.++.||+|++..
T Consensus 143 L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~-~~~--~~~----~~~~----~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 143 VHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHK-EAE--ERF----NARY----CDLDTLLQESDFVCIIL 208 (323)
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCch-hhH--Hhc----CcEe----cCHHHHHHhCCEEEEeC
Confidence 44569999999 999999998886 4555 88888864311 111 000 1121 25788999999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
... + +++. ++ |. +.+++-.|++++||++
T Consensus 209 plt--~-~T~~-li--~~-------~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 209 PLT--D-ETHH-LF--GA-------EQFAKMKSSAIFINAG 236 (323)
T ss_pred CCC--h-HHhh-cc--CH-------HHHhcCCCCeEEEECC
Confidence 321 1 1111 11 21 2334445899999986
No 469
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.42 E-value=0.12 Score=49.22 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
.++|+|||. |.+|+.+|..+..-|. +|..||......... .+ .... ..++++-++.||+|++..
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~~---~~~Ld~lL~~sDiv~lh~ 205 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVVG---VDSLDELLAEADILTLHL 205 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----ccee---cccHHHHHhhCCEEEEcC
Confidence 569999999 9999999999998898 999999833111100 11 1111 135788999999999975
No 470
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.39 E-value=0.12 Score=47.60 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=56.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH-hCCCCEEEEcC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-LTGMDIVIIPA 122 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a-l~~aDiVIi~a 122 (305)
.+||+|||. |.+|..++..|..... .-+++ ++|.+. .....+... ... .+|+++- ....|+||.||
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~~-----~~~---~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAGR-----VAL---LDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhcc-----Ccc---cCCHHHHhhcCCCEEEECC
Confidence 469999998 9999999998876532 12443 455432 122222221 111 1356442 38899999998
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
+ ...++++++.+-+.+.|-+++-++==.|
T Consensus 71 ~----------------~~av~e~~~~iL~~g~dlvv~SvGALaD 99 (267)
T PRK13301 71 G----------------QQAIAEHAEGCLTAGLDMIICSAGALAD 99 (267)
T ss_pred C----------------HHHHHHHHHHHHhcCCCEEEEChhHhcC
Confidence 6 3557777777776666655544333333
No 471
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.38 E-value=0.18 Score=49.89 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 45 PGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~-la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+.+||.|+|. |-.|.+ +|..|...|. +|...|.+... ...+|... .+..+.+. + .+.+.++|+||.+.|
T Consensus 6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEECCC
Confidence 3458999999 999999 7999999998 99999986532 12234332 12222222 3 366889999999998
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHHHHHHHHhCCCC
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIAAEVFKKVGTYD 184 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~--tNPvd~lt~~~~~~~~~~s~~p 184 (305)
+|.... ......+.+++++.+.- .+.+..++..+|-+ ||==...|.++.++++.. |++
T Consensus 76 i~~~~~-~~~~a~~~~i~i~~~~e-~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~-g~~ 135 (461)
T PRK00421 76 IPDDNP-ELVAARELGIPVVRRAE-MLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA-GLD 135 (461)
T ss_pred CCCCCH-HHHHHHHCCCcEEeHHH-HHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc-CCC
Confidence 874321 11122233445443311 11122111123334 444445666666666543 443
No 472
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.37 E-value=0.1 Score=46.93 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=49.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE--EecCCCHHHHhCCCCEEEEcCCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
++|.|+||+|++|+++...|+..++ +|+..-++......+. . ...+.. ......+..+++|.|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~--~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---G--GVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---C--CcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 5899999999999999999999987 8887776652222222 1 111111 22234567888999999998764
Q ss_pred C
Q 021932 125 P 125 (305)
Q Consensus 125 ~ 125 (305)
.
T Consensus 74 ~ 74 (275)
T COG0702 74 L 74 (275)
T ss_pred c
Confidence 3
No 473
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.37 E-value=0.057 Score=50.18 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhhhhc--ccCCceEEEEecC-CCHHHHhCCCCEEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISH--MDTNAVVRGFLGQ-QQLEDALTGMDIVII 120 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~--~~~~~~v~~~~~t-~d~~~al~~aDiVIi 120 (305)
.+.||+.||. |.+-.+........+....+.-+|+++ +...+..+.. .....++.+..+. .+...++++.|+|++
T Consensus 120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 3459999998 998777655554444444788999987 3333322222 1112344443221 233345789999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 021932 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL 161 (305)
Q Consensus 121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv 161 (305)
++=+. ++ .+-..++.+.+.++. |++.+++
T Consensus 199 AalVg----~~--------~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 199 AALVG----MD--------AEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -TT-S----------------SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhhcc----cc--------cchHHHHHHHHHhhCCCCcEEEE
Confidence 87332 22 223555666666665 5666554
No 474
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.35 E-value=0.26 Score=41.82 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
+.+||.|+|+ |.||...+..|+..|. +|++++.... ....++.. +......-. ++.++++|+||.+.
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~-~~l~~l~~------i~~~~~~~~-~~dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEIC-KEMKELPY------ITWKQKTFS-NDDIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccC-HHHHhccC------cEEEecccC-hhcCCCceEEEECC
Confidence 4469999999 9999999999999888 8999974322 12222211 111111112 35689999999874
No 475
>PLN00203 glutamyl-tRNA reductase
Probab=95.34 E-value=0.084 Score=53.37 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
...||+|||+ |.+|..++..|...|. .+|.+++++..... .+........+... ...++.+++.++|+||.+.+.
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~--~La~~~~g~~i~~~-~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVA--ALREEFPDVEIIYK-PLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHH--HHHHHhCCCceEee-cHhhHHHHHhcCCEEEEccCC
Confidence 3569999999 9999999999888775 47999998752221 12211001112211 123566889999999988654
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecCCCCcc
Q 021932 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNST 169 (305)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~tNPvd~l 169 (305)
+.. -+.++.++.+.+. ...-++|=++.|=|+=
T Consensus 340 ~~p-------------vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 340 ETP-------------LFLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CCC-------------eeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 421 1123333333221 1224677889998763
No 476
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.31 E-value=0.097 Score=52.76 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhhhhccc--CCc-e--------EEEEecCCCH-
Q 021932 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMD--TNA-V--------VRGFLGQQQL- 108 (305)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~--~~~-~--------v~~~~~t~d~- 108 (305)
+..++.||.|+|+ |.+|...+..+...|- +|+.+|+++ ....+..+.-.. ... . .+.. +.++
T Consensus 161 G~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~--s~~~~ 235 (509)
T PRK09424 161 GKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVM--SEEFI 235 (509)
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhc--chhHH
Confidence 4556779999999 9999999988888886 799999976 222222221100 000 0 0000 1121
Q ss_pred -------HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHH-HHHHHHHHHHhCCCcEEEEecCC
Q 021932 109 -------EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-VKTLCEGIAKCCPKAIVNLISNP 165 (305)
Q Consensus 109 -------~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i-~~~i~~~I~~~~p~aiviv~tNP 165 (305)
.+.++++|+||.|+|.|.++.. .. .++.++.++ |.+.|+.++-+
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~mk---pGgvIVdvg~~ 287 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVASMK---PGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHhcC---CCCEEEEEccC
Confidence 2224789999999998753211 12 244444444 78888777754
No 477
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=95.31 E-value=0.23 Score=40.77 Aligned_cols=112 Identities=23% Similarity=0.174 Sum_probs=63.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh---hhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV---TADISHMDTNAVVRGFLG-QQQ---LEDAL------ 112 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~---~~DL~~~~~~~~v~~~~~-t~d---~~~al------ 112 (305)
++.|+||+|.+|..++..|.+++. ..+++.+.++. ... ..++... ..++..+.. -++ +++.+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGA-RHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAALAAALAAIPAR 78 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhC-CeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999988775 25677776542 111 1222221 112222111 111 12222
Q ss_pred -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
...|.+|.++|...... .+ -..++..|+.....+.+.+.+..+.. ++++|
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-ii~~s 135 (180)
T smart00822 79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDF-FVLFS 135 (180)
T ss_pred cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcce-EEEEc
Confidence 33599999998542111 11 23446677777888888776655443 44444
No 478
>PRK08223 hypothetical protein; Validated
Probab=95.29 E-value=0.08 Score=49.46 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..||.|+|+ |-+|+.++..|+..|+. +|.|+|-+.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDV 61 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence 458999999 99999999999999984 999999874
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.26 E-value=0.13 Score=50.45 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=45.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE-ecCCCHHHH-hCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF-LGQQQLEDA-LTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~-~~t~d~~~a-l~~aDiVIi~ag 123 (305)
|||.|+|+ |.+|..++..|...++ +++++|.++... ..+.......-+.+- .....++++ ++++|.||++.+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 58999999 9999999999998888 999999876211 112110000111110 001123444 789999999853
No 480
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.26 E-value=0.67 Score=41.49 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCC
Q 021932 45 PGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVV 81 (305)
Q Consensus 45 ~~~KI~IIGaaG--~VGs~la~~L~~~~~~~el~L~D~~ 81 (305)
+.++|.|+||+| .+|..++..|+..|. +|++++++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~ 40 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWS 40 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCC
Confidence 345899999974 699999999999997 89999876
No 481
>PLN02306 hydroxypyruvate reductase
Probab=95.25 E-value=0.12 Score=50.43 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCchhh---hhhhc---ccCCceEEEEecCCCHHHHhCCCCE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISH---MDTNAVVRGFLGQQQLEDALTGMDI 117 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~~~g~~---~DL~~---~~~~~~v~~~~~t~d~~~al~~aDi 117 (305)
..++|+|+|. |.+|+.+|..+. ..|. +|..||........ ..... .......... ...++++.++.||+
T Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~sDi 239 (386)
T PLN02306 164 KGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREADV 239 (386)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhCCE
Confidence 4469999998 999999998875 4566 99999975421110 01100 0000011110 12368899999999
Q ss_pred EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
|++....- + +++ .++.. +.++.-.|++++||++
T Consensus 240 V~lh~Plt--~-~T~--------~lin~--~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 240 ISLHPVLD--K-TTY--------HLINK--ERLALMKKEAVLVNAS 272 (386)
T ss_pred EEEeCCCC--h-hhh--------hhcCH--HHHHhCCCCeEEEECC
Confidence 99975321 1 111 11111 3344445889999987
No 482
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.24 E-value=0.076 Score=50.97 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
...+++|||+ |..+...+..+..---+.+|.++|++. +...+.++.+. ..++.. ..+.++++++||+|+.+.
T Consensus 128 da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 128 DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT 201 (346)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence 4568999998 999988876665443468999999986 33444455442 123433 246889999999999865
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
.
T Consensus 202 ~ 202 (346)
T PRK07589 202 A 202 (346)
T ss_pred C
Confidence 3
No 483
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=95.23 E-value=0.066 Score=46.66 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceE----EEEecCCCHHHHhCCCCEEEE
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV----RGFLGQQQLEDALTGMDIVII 120 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v----~~~~~t~d~~~al~~aDiVIi 120 (305)
+++...|+||+|.+|..+...+...+.++.|+++-+.++ -+..+...+ ..++.-.++.+++++-|+-+.
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~-------~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~Fc 89 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL-------PDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFC 89 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC-------CCccccceeeeEEechHHHHHHHhhhcCCceEEE
Confidence 345788999999999999999999999999999987641 111111111 112112356788999999998
Q ss_pred cCCCCC-CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 121 PAGVPR-KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 121 ~ag~~~-~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
+-|.-| +.|-+ .+.+..-+.+.+.++..++.+-+-++++.|--.|
T Consensus 90 aLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd 135 (238)
T KOG4039|consen 90 ALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD 135 (238)
T ss_pred eecccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence 877543 33321 1223344667777777777777788887765444
No 484
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.22 E-value=0.068 Score=49.88 Aligned_cols=56 Identities=23% Similarity=0.430 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 124 (305)
+.++|+|+|++|.+|..+++.|+..+. +|.+++.. +.++.+.+++||+||.+.|.
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~ 212 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGK 212 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCC
Confidence 456999999944599999999988886 88888641 12456778999999999874
Q ss_pred C
Q 021932 125 P 125 (305)
Q Consensus 125 ~ 125 (305)
|
T Consensus 213 ~ 213 (283)
T PRK14192 213 P 213 (283)
T ss_pred C
Confidence 4
No 485
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=95.18 E-value=0.25 Score=55.26 Aligned_cols=118 Identities=13% Similarity=0.039 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCCchhh-hhhhcc---------cCCceEEEEecC-------
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVT-ADISHM---------DTNAVVRGFLGQ------- 105 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~--~~~el~L~D~~~~~g~~-~DL~~~---------~~~~~v~~~~~t------- 105 (305)
.+++|.|+||+|++|++++..|+..+ ...+|+.+.+....... ..+.+. ....++..+.+.
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35799999999999999998888776 33367766664311111 111110 001123332211
Q ss_pred ---CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932 106 ---QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 106 ---~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
..+.+..+++|+||.+|+... ......++...|+....++++...+...+.++.+.|
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS 1109 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSS 1109 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeC
Confidence 124455678999999987542 222334444569999999999988766555555544
No 486
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.22 Score=49.43 Aligned_cols=123 Identities=14% Similarity=0.065 Sum_probs=67.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-c-hh-hhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P-GV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~-g~-~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
+||.|+|+ |.+|..+|..|...|. +|.++|..+. . .. ...|... .+....+. +. +...++|+||++.|
T Consensus 17 ~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~G 87 (480)
T PRK01438 17 LRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSPG 87 (480)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECCC
Confidence 38999999 9999999999999898 8999996541 1 11 1123322 12222222 11 23567999999998
Q ss_pred CCCCCCCchhhHHHhhHHHHHHH--HHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHH
Q 021932 124 VPRKPGMTRDDLFNINAGIVKTL--CEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK 179 (305)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i--~~~I~~~~p~aiviv~tNPvd--~lt~~~~~~~~~ 179 (305)
++..... .......+++++.++ +-.+.+...+..+|-+|--.. ..+.+++.+++.
T Consensus 88 i~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 88 WRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred cCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 7632211 111123345554332 222221111333455544433 556677666654
No 487
>PRK06046 alanine dehydrogenase; Validated
Probab=95.16 E-value=0.083 Score=50.16 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
..+|+|||+ |..|...+..+....-+.++.++|+++ +...+.++.+. ....+... .+++++++ +|+|+++..
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aTp 202 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTTP 202 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEecC
Confidence 459999998 999999988787655578999999986 23333334322 12223332 36778786 999999753
No 488
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.15 E-value=0.23 Score=43.91 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCC
Q 021932 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVV 81 (305)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~ 81 (305)
..+.|+||+|++|..++..|++.|. +|++. +.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~ 35 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY--TVAVNYQQN 35 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCC
Confidence 3689999999999999999999987 77664 443
No 489
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=95.14 E-value=0.36 Score=45.22 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEe-cCCC---HHH-------H
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LED-------A 111 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------a 111 (305)
.+.+.|+||++.+|..++..|+..| . .|++.++++.. ....++... ...+..+. .-+| .++ .
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999998 7 89999886521 112223211 11122110 1111 111 1
Q ss_pred hCCCCEEEEcCCCCCCC----CCch---hhHHHhhH----HHHHHHHHHHHHhCC-CcEEEEec
Q 021932 112 LTGMDIVIIPAGVPRKP----GMTR---DDLFNINA----GIVKTLCEGIAKCCP-KAIVNLIS 163 (305)
Q Consensus 112 l~~aDiVIi~ag~~~~~----g~~r---~d~~~~N~----~i~~~i~~~I~~~~p-~aiviv~t 163 (305)
+...|++|..||..... ..+. ...+..|. -+++.+.+.+.+... .+.|+++|
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vs 142 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVG 142 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 24689999999963221 1121 22344554 346666777765532 34555554
No 490
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.13 E-value=0.27 Score=40.76 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=70.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----CchhhhhhhcccCCceEEEEecC-CC----------HHHHh
Q 021932 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQ-QQ----------LEDAL 112 (305)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t-~d----------~~~al 112 (305)
.+.|+||+|-+|..++..|++.|- ..|++++.++ ......++.+. ..++..+... ++ ..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 588999999999999999998843 3888888872 11122233321 1233322111 11 12234
Q ss_pred CCCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932 113 TGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (305)
Q Consensus 113 ~~aDiVIi~ag~~~~~g~---~---r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd 167 (305)
...|++|.++|....... + -.+.+..|+.....+.+.+.. .+.+.|+++|....
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAG 138 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGG
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhh
Confidence 589999999997652211 1 124556676666666666666 55777777765443
No 491
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.13 E-value=0.12 Score=48.90 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 122 (305)
...+++|+|+ |..+...+..+..-...++|.++|++.. ...+..+.+. ...+... .+.++++++||+|+.+.
T Consensus 127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT 200 (315)
T PRK06823 127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence 4569999998 9999988877776555689999999872 3333333332 2234432 46789999999999865
Q ss_pred C
Q 021932 123 G 123 (305)
Q Consensus 123 g 123 (305)
+
T Consensus 201 ~ 201 (315)
T PRK06823 201 P 201 (315)
T ss_pred C
Confidence 3
No 492
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.11 E-value=0.54 Score=44.52 Aligned_cols=118 Identities=23% Similarity=0.218 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-----------CCCHHH
Q 021932 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-----------QQQLED 110 (305)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-----------t~d~~~ 110 (305)
...+-+.|+||++-+|..+|..|+.+|. +|++..++.. ...+.++........+..... ...+++
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga--~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA--HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3345788999999999999999999996 9999998862 223344544211122211100 112334
Q ss_pred HhCCCCEEEEcCCCCCCCCCchhh----HHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932 111 ALTGMDIVIIPAGVPRKPGMTRDD----LFNIN----AGIVKTLCEGIAKCCPKAIVNLIS 163 (305)
Q Consensus 111 al~~aDiVIi~ag~~~~~g~~r~d----~~~~N----~~i~~~i~~~I~~~~p~aiviv~t 163 (305)
....-|+.|..||+...+.....| .+..| .-+.+.+.+.+++..|--||.+.|
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS 171 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSS 171 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 456889999999975544322212 12333 356778888888877844444445
No 493
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.08 E-value=0.28 Score=43.19 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
..||.|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 358999998 8899999999999997 5899999874
No 494
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.06 E-value=0.064 Score=50.49 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCcchhhHHHHHHHhhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 3 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
.|||.-+.|++...+..+ |+-..-+-.....-- .+..+-||+|+|+ |.||..-|......|- +|.++|.+.
T Consensus 131 aPMSeVAGrla~q~Ga~~-----lek~~GG~GvllgGv-pGV~~~kv~iiGG-GvvgtnaAkiA~glgA--~Vtild~n~ 201 (371)
T COG0686 131 APMSEVAGRLAAQAGAYY-----LEKTNGGKGVLLGGV-PGVLPAKVVVLGG-GVVGTNAAKIAIGLGA--DVTILDLNI 201 (371)
T ss_pred chHHHHhhhHHHHHHHHH-----HHhccCCceeEecCC-CCCCCccEEEECC-ccccchHHHHHhccCC--eeEEEecCH
Confidence 489999999887766653 211110111111111 3455679999999 9999998877765554 999999975
Q ss_pred CchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932 83 TPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 83 ~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 125 (305)
.+-.-+|-.. ..++.. .+...+++++++.+|+||-+.-+|
T Consensus 202 ~rl~~ldd~f---~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 202 DRLRQLDDLF---GGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred HHHhhhhHhh---CceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 2111122221 234443 223347889999999998865443
No 495
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.04 E-value=0.12 Score=46.68 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=29.6
Q ss_pred CEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932 47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 82 (305)
Q Consensus 47 ~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~ 82 (305)
+.+.|+||+ +-+|..++..|++.|. +|++.++++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence 479999997 5899999999999998 899998764
No 496
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.03 E-value=0.085 Score=53.62 Aligned_cols=103 Identities=21% Similarity=0.279 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEeCCCC--chhhhhhhccc-CCc-eEEEEecCCCHHHH
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVNT--PGVTADISHMD-TNA-VVRGFLGQQQLEDA 111 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~-----~~~-----~~el~L~D~~~~--~g~~~DL~~~~-~~~-~v~~~~~t~d~~~a 111 (305)
..||.+.|| |..|..+|..|.. .|+ ...+.++|.+.+ .+..-+|.+.. .+. ... ...+++++
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~ 396 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA 396 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence 469999999 9999999987776 355 258999998762 11110122211 011 111 12478999
Q ss_pred hCC--CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932 112 LTG--MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166 (305)
Q Consensus 112 l~~--aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv 166 (305)
+++ +|+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.
T Consensus 397 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt 439 (581)
T PLN03129 397 VKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT 439 (581)
T ss_pred HhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 999 89887766543 2 13567888999999999999999997
No 497
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.01 E-value=0.15 Score=49.27 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~ 81 (305)
..||.|+|+ |-+|+.++..|+..|+ .+|.|+|.+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 458999999 9999999999999997 599999987
No 498
>PRK07877 hypothetical protein; Provisional
Probab=95.01 E-value=0.11 Score=54.49 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----Cchh---hh------------hhhcccCCceEEEEec-
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---TA------------DISHMDTNAVVRGFLG- 104 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-----~~g~---~~------------DL~~~~~~~~v~~~~~- 104 (305)
..||+|+|+ | +|+.++..|+..|++.+|.|+|-+. +.-+ .. .+.......++..+..
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 469999999 9 9999999999999877999999874 1111 01 1222222334444321
Q ss_pred --CCCHHHHhCCCCEEEEcC
Q 021932 105 --QQQLEDALTGMDIVIIPA 122 (305)
Q Consensus 105 --t~d~~~al~~aDiVIi~a 122 (305)
..+..+-++++|+||-+.
T Consensus 185 i~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred CCHHHHHHHhcCCCEEEECC
Confidence 134556678999999985
No 499
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.00 E-value=0.088 Score=49.13 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=50.3
Q ss_pred cccCCCC----------CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC
Q 021932 36 MDCRAKG----------GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ 105 (305)
Q Consensus 36 ~~~~~~~----------~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t 105 (305)
.+|||.+ +...++|+|||.+|.||..++..|+..+. .|.++... +
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------T 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------C
Confidence 6888751 23457999999999999999999998887 77766211 1
Q ss_pred CCHHHHhCCCCEEEEcCCCC
Q 021932 106 QQLEDALTGMDIVIIPAGVP 125 (305)
Q Consensus 106 ~d~~~al~~aDiVIi~ag~~ 125 (305)
.++++.+++||+||.+.|.+
T Consensus 193 ~~l~~~~~~ADIVI~avg~~ 212 (284)
T PRK14179 193 RNLAEVARKADILVVAIGRG 212 (284)
T ss_pred CCHHHHHhhCCEEEEecCcc
Confidence 24667899999999999865
No 500
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.99 E-value=0.28 Score=45.13 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=40.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (305)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 123 (305)
++||+|||+ |.+|..++..+...+.. ++. +++.........+... ..+..+ +|+++.-.+.|+|+++++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~----~~~~~~---~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALG----EAVRVV---SSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhc----cCCeee---CCHHHhccCCCEEEECCC
Confidence 469999999 99999999888776432 443 3343322111111110 112222 355443356999999975
Done!