RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021932
(305 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 438 bits (1129), Expect = e-156
Identities = 242/266 (90%), Positives = 252/266 (94%)
Query: 39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1 RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61 VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
VGGHAGVTILPLLSQVKP S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 279 KFADACLRGLRGDAGVIECAYVASTV 304
KFADACLRGLRGDAGVIECA+V+S V
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQV 266
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 425 bits (1094), Expect = e-151
Identities = 158/255 (61%), Positives = 196/255 (76%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP A++ +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
+PL+SQ P ++ LT RIQ GTEVV+AK GAGSATLSMAYA A+F + +
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 288 LRGDAGVIECAYVAS 302
+ G GV+EC++V S
Sbjct: 242 MNGKEGVVECSFVKS 256
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 407 bits (1048), Expect = e-144
Identities = 157/259 (60%), Positives = 189/259 (72%), Gaps = 4/259 (1%)
Query: 48 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
KVAVLGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62 DATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
VN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
TILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 286 RGLRGDAGVIECAYVASTV 304
R L+G+ GV+ECAYV
Sbjct: 240 RALQGEQGVVECAYVEGDG 258
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 151 bits (383), Expect = 2e-43
Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 23/258 (8%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGFLGQ 105
K+ ++GAAG IG +A + L L LYD GV +I H +
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGL--NLTFT 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
+++ALT ++ G PRK GMTR+DL NA I L + I CP V +I N
Sbjct: 68 SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223
P + T + P ++ + LD R + +A+ G+ V GGH
Sbjct: 128 PADITGLVTL----IYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182
Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
G + L+ + + LT + L R+ GG +++ + S+ S
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG--RSSFQSP 240
Query: 274 AYAAAKFADACLRGLRGD 291
+Y + + A + G
Sbjct: 241 SYVSIEMIRAAMGGEAFR 258
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 142 bits (360), Expect = 2e-40
Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 31/257 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHM------DTNA 97
KV ++GA+G +G A+L+ P + L L + G+ DI D N
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
V + ++++ D+VII +GVPRK GM+R DL NA IV + IA+ C
Sbjct: 62 YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
I +I+NPV+ + ++ ++ G+ T LD +R +A+ G+ EV
Sbjct: 118 IF-VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172
Query: 217 PVVGGHAGVTILPLLSQVKPS-------CSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
++G H G +++PLLS ID + + ++ G +++ K G +
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGS 228
Query: 270 TLSMAYAAAKFADACLR 286
A A +
Sbjct: 229 EFGPAAAILNVVRCIVN 245
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 139 bits (352), Expect = 2e-39
Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 24/250 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHM---DTNAVVR 100
KV+V+GAAG +G + + + + D+ + T AD +H D+N V
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV- 60
Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
Q ED G D+V+I AG+PR+PG TR DL NA I++ + + + I
Sbjct: 61 ---RQGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
SNPV+ + + G ++++G LD R ++E + V+ ++
Sbjct: 117 TTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL 172
Query: 220 GGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
G H G +P+ S+V + E + L +Q +V+E K G+ A
Sbjct: 173 GEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARG 228
Query: 277 AAKFADACLR 286
A +A L
Sbjct: 229 VAHMVEAILH 238
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 138 bits (351), Expect = 4e-39
Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 26/253 (10%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHM----DTNAVV 99
KV+V+GA G G A L+ L V+ L D+ T D+ +A +
Sbjct: 10 KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPVQGFDANI 67
Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
G D+ D+V+I AG+ RKPGM+RDDL N+ I+K++ IAK P AI+
Sbjct: 68 IGTSDYADTADS----DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
+++NPV+ K + +R++G +LD R TF+A+ L L +++ V
Sbjct: 124 VVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFV 179
Query: 219 VGGHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
+GGH G ++PL+ P +L ++ + +R + GG E+V G GSA +
Sbjct: 180 LGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAP 237
Query: 274 AYAAAKFADACLR 286
A + + +A L+
Sbjct: 238 AASLVEMTEAILK 250
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 137 bits (348), Expect = 1e-38
Identities = 69/251 (27%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
KV V+GA G +G +A + + + + D+ + G D+ + V G
Sbjct: 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
ED+ D+ II AG+PR PGM+RDDL N IV + E + P + + +
Sbjct: 61 TNDYGPTEDS----DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
++NP++ + V + + R++G+ +LD R +F+AE L + R+V ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
GH G T++PL P L I+ + +R + G E+V+ SA +
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229
Query: 276 AAAKFADACLR 286
AAA+ +A L+
Sbjct: 230 AAAEMTEAILK 240
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 137 bits (347), Expect = 2e-38
Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 24/251 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
K++++GA G +G A + L ++ L D+V G D+ + V G
Sbjct: 4 KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTG 61
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
++ D++++ +G PRKPGM+R+DL +NA I + A P A++ +
Sbjct: 62 TNNYADTANS----DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 117
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
++NP++ + +V + +R++G +LD R TF+A G+ +V ++G
Sbjct: 118 VNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG 173
Query: 221 GHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
GH G ++PL P P + + +R + GG E+V GSA + A
Sbjct: 174 GH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAA 231
Query: 276 AAAKFADACLR 286
A A+ +A L+
Sbjct: 232 ATAQMVEAVLK 242
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 137 bits (347), Expect = 2e-38
Identities = 85/256 (33%), Positives = 132/256 (51%), Gaps = 29/256 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
K+ ++GA G IG LA L I L V+ L+D+ G D+ + VRG
Sbjct: 7 KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ LE++ D+VI+ AGVPRKPGM+RDDL IN +++T+ EGI CP A V
Sbjct: 65 TNDYKDLENS----DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
I+NP++ I + +K +++G+ +LD R TF+A+ L + ++V V+G
Sbjct: 121 ITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG 176
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
GH G T++PL L Q+ L +D + R ++GG E+V GSA
Sbjct: 177 GH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAY 234
Query: 271 LSMAYAAAKFADACLR 286
+ A A + A++ L+
Sbjct: 235 YAPAAAGIQMAESFLK 250
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 136 bits (346), Expect = 2e-38
Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 23/251 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
K+ V+GA G +G A + L L L DVV G D+ V F
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES---GPVGLFDTK 57
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
G D DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ +
Sbjct: 58 VTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+SNP++ I V +R++G+ +LD R +F+A LG+ ++++ V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172
Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
GH G ++P++ P L P E ID L +R +NGG E+VE GSA + A
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQGSAFYAPAS 230
Query: 276 AAAKFADACLR 286
+ + ++ +
Sbjct: 231 SVVEMVESIVL 241
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 136 bits (346), Expect = 2e-38
Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 29/256 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
K+AV+G+ G IG +A ++ + L V+ L+D+ G DI+H + + V G
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ + D+VII A +P +P R +L NA I+ ++ EG+ K CP A V
Sbjct: 64 TDDYADISGS----DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
I+NP++ + F+KV ++ G+ +LD R TF+A+ G++ +V V+G
Sbjct: 120 ITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIG 175
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
GH G ++P LS +T +ID + + EV + G+A
Sbjct: 176 GH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAY 233
Query: 271 LSMAYAAAKFADACLR 286
+ A AA K A+A L+
Sbjct: 234 FAPAAAAVKMAEAYLK 249
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 136 bits (346), Expect = 3e-38
Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 29/256 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
K++++GA G IG +A+L+ L V ++D++ G D++H + A + G
Sbjct: 16 KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ L+++ D+VII AGVPRKP MTR DL +NA IV ++ E + K CP A V
Sbjct: 74 ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
I+NP++ FK+ ++ G+ +LD R ++ LG+ P +V VVG
Sbjct: 130 ITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
GH G ++PL LS +T ++I+ + + GG E+VE GSA
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAF 243
Query: 271 LSMAYAAAKFADACLR 286
+ A +A A A L+
Sbjct: 244 YAPAASAVAMAQAYLK 259
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 134 bits (341), Expect = 1e-37
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 28/245 (11%)
Query: 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRGF 102
+ +LGA G +G A+++ + +L L G D++H + + G
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAHAAAELGVDIRISGS 59
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
+ + + DIV++ AG+ RKPGMTR+ L NA + L E I AIV +
Sbjct: 60 NSYEDMRGS----DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
+NPV+ V K + +R++G +LD R ++++ LG+ + V+ V+G
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171
Query: 222 HAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATL 271
H G + P+ ++ EI+ + N G ++ E + + + +
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLV 230
Query: 272 SMAYA 276
A
Sbjct: 231 LTVEA 235
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 133 bits (338), Expect = 3e-37
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 29/256 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
K+A++G+ G IG LA L + L V+ L+D+ G DI+ +A G
Sbjct: 9 KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+E A D+VI+ AGVPRKPGM+RDDL IN +++ + GI K P+A V
Sbjct: 67 ANDYAAIEGA----DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVIC 122
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
I+NP++ +K +++G+ +LD R F++E + +V V V+G
Sbjct: 123 ITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG 178
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
GH G +++PL L + + ++D + R ++GG E+V GSA
Sbjct: 179 GH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAF 236
Query: 271 LSMAYAAAKFADACLR 286
+ A +A + A++ L+
Sbjct: 237 YAPAASAIQMAESYLK 252
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 131 bits (332), Expect = 3e-36
Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 33/261 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
KVA++G+ G IG + L + L V+ LYDVV G D+SH+ V
Sbjct: 11 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHV---TSVVDTNVS 65
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPK 156
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
+ +++NP++ +V + + G+ MLD R +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 216 VPVVGGHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
V+G H G ++PL+ + +T +++ + + + G E+V G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239
Query: 266 AGSATLSMAYAAAKFADACLR 286
GSA + A +A A + L
Sbjct: 240 QGSAYYAPAASAVAMATSFLN 260
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 130 bits (329), Expect = 7e-36
Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 36/261 (13%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
K+ ++G+ G IG +A L+ L V+ L+D+V G D SH +N V G
Sbjct: 6 KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
L A D+VI+ AG + PG + RDDL +N I+ + I K CP
Sbjct: 64 SNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ + ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H G ++ L L + + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLR 286
S ++ A A + A++ L+
Sbjct: 233 -ASPYVAPAAAIIEMAESYLK 252
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 127 bits (321), Expect = 1e-34
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 32/259 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
KV ++G G +G A M + + DVV T G D+ + G
Sbjct: 7 KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ D D+V+I AG P+KPG +R DL N N I+ ++ + + I +
Sbjct: 66 -----EYSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+NPV+ I K + +R++G T LD R + + +DPR VD ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175
Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
H G + S ++ ++ L D ++N +++ K G+
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231
Query: 271 LSMAYAAAKFADACLRGLR 289
+ A + + A LR
Sbjct: 232 YGIGTALMRISKAILRDEN 250
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 126 bits (320), Expect = 1e-34
Identities = 63/259 (24%), Positives = 107/259 (41%), Gaps = 31/259 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
KV ++G G +G A + +V L + D+ G D+ H T V+
Sbjct: 8 KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ D D+V+I AG +KPG TR DL + N I K++ + I +
Sbjct: 67 ----GEYSD-CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV 121
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+NPV+ I A K +R++G T+LD R ++E + PR VD ++G
Sbjct: 122 ATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIG 177
Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
H G T LP+ S +I+ + + ++ ++++AK G+
Sbjct: 178 EH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATY 233
Query: 271 LSMAYAAAKFADACLRGLR 289
+A A+ +A R
Sbjct: 234 YGVAMGLARITEAIFRNED 252
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 126 bits (320), Expect = 2e-34
Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 31/259 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
KV ++G G +G A M + + + + D+ T G D+S+ +
Sbjct: 11 KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 69
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ D D+V+I AG P+KPG TR DL N N I+K++ + I I +
Sbjct: 70 -----EYSD-AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+NPV+ I K+ + R++G T LD R +AE++ +D R V ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
H + I + + VK + ++ + + +++ E+++ K G+
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATF 236
Query: 271 LSMAYAAAKFADACLRGLR 289
+A A A+ + A L
Sbjct: 237 YGIATALARISKAILNDEN 255
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 126 bits (318), Expect = 2e-34
Identities = 54/255 (21%), Positives = 102/255 (40%), Gaps = 22/255 (8%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
+V V+GA G +G + + + L D G D +H A +
Sbjct: 8 RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
+D D+V+I AG +KPG TR DL + N I +++ E + + + + +NP
Sbjct: 67 GDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP 125
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
V+ I K +R++G T+LD R + E + P+ V ++G H
Sbjct: 126 VD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD 181
Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
+ I +P+ V+ +++ + +++ +++E K G+ +A
Sbjct: 182 TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIA 238
Query: 275 YAAAKFADACLRGLR 289
A+ A L
Sbjct: 239 MGLARVTRAILHNEN 253
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 125 bits (317), Expect = 4e-34
Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 22/255 (8%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
KVA++GA G +G A + + L + DV G D++H A
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
ED DIV I AG +KPG TR +L N I K + + I + +NP
Sbjct: 66 GTYED-CKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
V+ I K +R++G T LD R ++E G P+ V ++G H
Sbjct: 125 VD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGD 180
Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
+ + +P+ V+ + + E+D + D ++N ++E K G+ +A
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVA 237
Query: 275 YAAAKFADACLRGLR 289
+ A+ A L
Sbjct: 238 MSLARITKAILHNEN 252
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 124 bits (314), Expect = 1e-33
Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 31/256 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
K+ ++G G +G A + + + L DV G D+ H F +
Sbjct: 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP------FTRR 54
Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ L G D+VI+ AGVP+KPG TR L NA ++K + ++K P +IV +
Sbjct: 55 ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
++NPV+ + F K DP+++ G T+LD R T +A+ G PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170
Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
H +G I +PL + + ++ ++ + E++E K G+
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATH 227
Query: 271 LSMAYAAAKFADACLR 286
++A A A ++
Sbjct: 228 YAIALAVADIVESIFF 243
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 124 bits (313), Expect = 2e-33
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 34/262 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
K+AV+GA G +G LA + + L D+ D+ H T ++
Sbjct: 9 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 67
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
E D+V+I AG +KPG +R +L I+K + + K P AI L
Sbjct: 68 ----DDPEI-CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 122
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
I+NPV+ IA V +K+ ++ G T LD R +A+ G++ + V + G
Sbjct: 123 ITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAG 178
Query: 221 GHAGVTILPLLSQV-------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
H G + +PL L + + + ++N +++ K G
Sbjct: 179 EH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---G 234
Query: 268 SATLSMAYAAAKFADACLRGLR 289
+ ++ + +A L
Sbjct: 235 ATNYAIGMSGVDIIEAVLHDTN 256
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 122 bits (308), Expect = 5e-33
Identities = 53/250 (21%), Positives = 105/250 (42%), Gaps = 33/250 (13%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
K+ +GA G +G A +N V + L D+ G D++H +D + G
Sbjct: 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
L+ + +I+++ AG+ RKPGMTR DL + NAGI+K + + I + P++ + +
Sbjct: 61 GADYSLLKGS----EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
++NP++ + + K + G+ LD R + + ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170
Query: 221 GHAGVTILPLLSQV----KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
H G ++ S + + + + + ++ EV++ K G+ A A
Sbjct: 171 EH-GDSMFVAKSLADFDGEV-------DWEAVENDVRFVAAEVIKRK---GATIFGPAVA 219
Query: 277 AAKFADACLR 286
+ A +
Sbjct: 220 IYRMVKAVVE 229
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 121 bits (307), Expect = 8e-33
Identities = 56/261 (21%), Positives = 107/261 (40%), Gaps = 34/261 (13%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
KV ++G+ G +G A + + + + L D+ DI H F
Sbjct: 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54
Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ L G V++ AGV ++PG TR L + NA + + + + P+A++ +
Sbjct: 55 VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+NPV+ + +V + P R++G T+LD R +AE L + P+ V V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170
Query: 221 GHAGVTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
H G + + + S +L+P + + + ++ ++E K G+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GA 226
Query: 269 ATLSMAYAAAKFADACLRGLR 289
+ A+ A L +
Sbjct: 227 TYYGIGAGLARLVRAILTDEK 247
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 121 bits (307), Expect = 9e-33
Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 23/244 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQ 106
K+ V+G G +G + + + L L D+ T G T D+ + V +
Sbjct: 16 KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE----ISK 70
Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
L +VI + D+ N + + L + +++ + S P
Sbjct: 71 DLSA-SAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127
Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
V I V K+ T+ R++G+ LD R + VL +V V+G G
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
+ S ++ N E++ K G + S+ + A D+ +
Sbjct: 184 DKVLTWSGQ------EEVVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIV 234
Query: 286 RGLR 289
+
Sbjct: 235 NNKK 238
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 121 bits (307), Expect = 9e-33
Identities = 63/262 (24%), Positives = 112/262 (42%), Gaps = 36/262 (13%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
KVA++GA G +G A M + + L L DV G DI+H M ++ G
Sbjct: 9 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 67
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
D + D++++ AG RKPG TR DL N I K + + I K ++ +
Sbjct: 68 -----DYSD-VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+SNPV+ I + +K +++G T+LD +R ++E LG+D + V ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
H AG I + K + + + + + ++ G +++ K G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCNFT--EEDKKKIAEDVKTAGATIIKNK---G 232
Query: 268 SATLSMAYAAAKFADACLRGLR 289
+ +A + + L+
Sbjct: 233 ATYYGIAVSINTIVETLLKNQN 254
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 122 bits (307), Expect = 1e-32
Identities = 59/255 (23%), Positives = 100/255 (39%), Gaps = 33/255 (12%)
Query: 48 KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
+V V GAAG I L + K P++ L L D+ GV ++ D
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60
Query: 97 AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
++ + + E A +D+ I+ +PR+ GM R DL N I K + K
Sbjct: 61 LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
K++ V ++ NP N+ A+ K + + +T LD RA +A LG+ +V
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177
Query: 215 DVPVVGGHAGVTILPLLSQV----KPSCSLTPTEI-------DYLTDRIQNGGTEVVEAK 263
++ G+ T P ++ + + +Q G V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237
Query: 264 TGAGSATLSMAYAAA 278
SA +S A A
Sbjct: 238 -KLSSA-MSAAKAIC 250
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 121 bits (307), Expect = 1e-32
Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 25/257 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
K+ V+G G +G A+ + + L L L DV+ G D+ H +
Sbjct: 21 KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS 79
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
+ +VII AG ++ G +R +L N I K + + K P+ + ++SNP
Sbjct: 80 KDYSV-TANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
V+ I V K+ + R++G LD R + E LG+ P V+G H G
Sbjct: 139 VD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-G 193
Query: 225 VTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 272
+ +P+ S V + + + ++ + EV++ K G + +
Sbjct: 194 DSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWA 250
Query: 273 MAYAAAKFADACLRGLR 289
+ + A A++ ++ LR
Sbjct: 251 IGLSVADLAESIMKNLR 267
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 121 bits (305), Expect = 2e-32
Identities = 65/249 (26%), Positives = 99/249 (39%), Gaps = 26/249 (10%)
Query: 48 KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----N 96
+VAV GAAG IG L ML K P++ L L ++ + M+
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
++ G + A D ++ PRK GM R DL +N I +A+ K
Sbjct: 63 PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
+ V ++ NP N+ IA K +P+ +T LD RA +A+ G +
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSA 269
V G+ T+ P L +P+ L E + G +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238
Query: 270 TLSMAYAAA 278
S A AA
Sbjct: 239 -ASAANAAI 246
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 119 bits (301), Expect = 7e-32
Identities = 62/253 (24%), Positives = 93/253 (36%), Gaps = 31/253 (12%)
Query: 48 KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
+VAV GAAG I L ML K P++ L L ++ N GV +I D
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62
Query: 95 TNA-VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
++ G A D+ ++ PR PGM R DL NA I + I
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 154 CPK-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 212
+ V ++ NP N+ IA K + K + LD RA + +A G
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179
Query: 213 EVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTE---IDYLTDRIQNGGTEVVEAKTG 265
++ V G+ T+ + + D + G +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238
Query: 266 AGSATLSMAYAAA 278
SA S A AA
Sbjct: 239 VSSA-ASAANAAI 250
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 118 bits (298), Expect = 2e-31
Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 15/247 (6%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
K+ V+G +G A+ + + L + L DV+ G D+ H +
Sbjct: 23 KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG 81
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
+ G +V+I AG ++ G +R +L N I K + I K P + L
Sbjct: 82 KDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
+ K+ R++G LD R + E LG+ V V+G H G
Sbjct: 141 GT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-G 195
Query: 225 VTILPLLSQVKPSCSLTPT-----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 279
++ + S + + E+ L VV + + A
Sbjct: 196 DSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVAD 255
Query: 280 FADACLR 286
A ++
Sbjct: 256 LAQTIMK 262
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 117 bits (294), Expect = 2e-30
Identities = 56/260 (21%), Positives = 91/260 (35%), Gaps = 29/260 (11%)
Query: 48 KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
+AV GAAG I L + + P+ L L + GV ++ D+
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89
Query: 97 AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
+R + +D ++ PR PGM R L +IN I + +
Sbjct: 90 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
K + V ++ NP N+ I K K +T LD RA +A G+ +V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206
Query: 215 DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGAG 267
+ G+ T +P K I + T +Q G +++ G
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265
Query: 268 SATLSMAYAAAKFADACLRG 287
SA S A + A + +
Sbjct: 266 SA-ASTAVSIADAIKSLVTP 284
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 112 bits (283), Expect = 2e-29
Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 42/261 (16%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHM-----DTNAVVR 100
KV V+G G +G A + + S L L D DI+H T
Sbjct: 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60
Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
G L +VI+ AG +KPG +R DL NA I + L I + P A++
Sbjct: 61 GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
+ SNPV+ + ++ ++ P ++G T+LD R +A+ G+D V
Sbjct: 114 VTSNPVD----LLTDLATQL---APGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYV 166
Query: 219 VGGH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+G H AG+ + + + + +N ++E K
Sbjct: 167 LGEHGDSEVLAWSSAMVAGMPVADFMQAQNL--PWNEQVRAKIDEGTRNAAASIIEGK-- 222
Query: 266 AGSATLSMAYAAAKFADACLR 286
+ + A A+ +A LR
Sbjct: 223 -RATYYGIGAALARITEAVLR 242
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 109 bits (275), Expect = 3e-28
Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 24/256 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
K+ ++G G +G +A + + D D N G +
Sbjct: 3 KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
L D+VI G + P R + +V+++ + + ++ +
Sbjct: 62 NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
ISNPV+ + +F+ V + +++G T+LD R V E LDPR V +G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLG 176
Query: 221 GHAGVTILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
H G + S V +P +L ++ + + + GG V+ K G + +
Sbjct: 177 EH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTSYGV 232
Query: 274 AYAAAKFADACLRGLR 289
A +A + A A +
Sbjct: 233 ATSAIRIAKAVMADAH 248
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 53.3 bits (127), Expect = 4e-08
Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)
Query: 45 PGFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTN 96
P K+ ++GA G ++ L K L S + L D+ ++ A +
Sbjct: 2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-------------- 142
A ++ F L+D + D VI A V + + G
Sbjct: 61 ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119
Query: 143 ------------VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
+ I K PKA +NP+ V P + +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPI-FEGTTL------VTRTVPIKAVG 172
Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+ E LGL+ +VD V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 51.6 bits (123), Expect = 1e-07
Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 28/202 (13%)
Query: 47 FKVAVLGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF 102
K+A +G G G ++ L + + LYD+ I + N R +
Sbjct: 6 IKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR-Y 63
Query: 103 LGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNINAG--------- 141
L+ AL+ DIVII P + G+ + + G
Sbjct: 64 EAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAV 123
Query: 142 -IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN 200
I + I P++ V +NP++ + +VF + + T +
Sbjct: 124 PIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMV 183
Query: 201 TFVAEVLGLDPREVDVPVVGGH 222
T + ++ V V+G +
Sbjct: 184 TERLGIEVPRREDIRVNVLGIN 205
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 47.5 bits (112), Expect = 3e-06
Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 40/218 (18%)
Query: 46 GFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNA 97
F + + G G P L +L + + L LYD + D+ +
Sbjct: 28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 86
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI--------------- 142
+ F E+A T +D V+ V + D+ + G+
Sbjct: 87 DIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGM 145
Query: 143 -----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV 197
V + + + K P A + SNP + ++L + + V
Sbjct: 146 RSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS------KILNICDM-PV 198
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
+A++LGL R+ + + G+ + ++
Sbjct: 199 GIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQ 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 54/308 (17%), Positives = 101/308 (32%), Gaps = 109/308 (35%)
Query: 38 CRAKGGSPGFKVAVLGAAGGIGQPL--AMLMK--------INPLVSVLHL---------- 77
+ G +PG + L A G Q L A+ + + + +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 78 -YDVVN-TPGVTADI--------SHMDTNAVVRGFLGQQQLED----------------- 110
Y + P + D S M + L Q+Q++D
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPM---LSISN-LTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 111 ALT-GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK------------- 156
+L G +++ +G P+ L+ +N + K AK
Sbjct: 369 SLVNGAKNLVV-SGPPQ-------SLYGLNLTLRK------AKAPSGLDQSRIPFSERKL 414
Query: 157 AIVN--L-ISNPVNS------TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL 207
N L +++P +S + I ++ K +++ K + + + D TF
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYD-----TFD---- 464
Query: 208 GLDPREVDVPVVGGHAG-VTILPL----LSQVKPSCSLT--P---TEIDYLTDRIQNG-G 256
G D R + + + LP+ +Q K + L P + + LT R ++G G
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 257 TEVVEAKT 264
V+ A T
Sbjct: 525 VRVIVAGT 532
Score = 42.3 bits (99), Expect = 1e-04
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 34/145 (23%)
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL-----GLDPRE------VDVP 217
T A +V+ + + K G ++LD+V N + G RE +
Sbjct: 1638 TSKAAQDVWNRADNH-FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 218 VVGGHAGVTILPLLSQVKPSCSLT-PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
V G I +++ S + + T Q T+ A M A
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---QF--TQP---------ALTLMEKA 1742
Query: 277 AAKFADACLRGLRGDAGVIECAYVA 301
A L+ + A A
Sbjct: 1743 A-------FEDLKSKGLIPADATFA 1760
Score = 41.2 bits (96), Expect = 4e-04
Identities = 45/254 (17%), Positives = 75/254 (29%), Gaps = 83/254 (32%)
Query: 57 GIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTN------AVVRG---- 101
G Q M M LY + AD +H +V
Sbjct: 1625 GS-QEQGMGM---------DLYK--TSKAAQDVWNRAD-NHFKDTYGFSILDIVINNPVN 1671
Query: 102 ----FLGQ--QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC- 154
F G+ +++ + + M I G + + +F K + E
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLK-----TEKIF-------KEINEHSTSYTF 1719
Query: 155 --PKAIVNLISN--PVNSTVPIAA-EVFKKVGTYDPKRL-----LG----------V--- 191
K +++ P + + AA E K G LG V
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 192 -TMLDVV--RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYL 248
++++VV R T V PR D + + I P +V S S + Y+
Sbjct: 1780 ESLVEVVFYRGMTMQVAV----PR--DELGRSNYGMIAINP--GRVAASFSQE--ALQYV 1829
Query: 249 TDRIQNGGTEVVEA 262
+R+ +VE
Sbjct: 1830 VERVGKRTGWLVEI 1843
Score = 38.5 bits (89), Expect = 0.003
Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 71/175 (40%)
Query: 134 DLFNINAGIVKTLCEGIA--------------KCCPKA--IVNLISNPVNSTVP-----I 172
DL+ +V L + A K + I+ + NP S P +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLL 232
Query: 173 AAEV-FKKVGTYDPKRLLGVTMLDVVRANTFV-AEVLGLDPREVDVPVVG--GH-AGV-- 225
+ + P L+GV L A+ V A++LG P E+ + G GH G+
Sbjct: 233 SIPISC-------P--LIGVIQL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 226 ------------------TILPLL-------SQVKPSCSLTPTEIDYLTDRIQNG 255
+ +L + P+ SL P+ L D ++N
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI---LEDSLENN 331
Score = 31.6 bits (71), Expect = 0.44
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 1 MQQPTSGANQRIAR-I--------AAHLHPPTLQIE---GESSGLGRMDCRAKGGSPGFK 48
++ + ++RI I T ++ G +SGLG + R K G+ G +
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT-GVR 526
Query: 49 VAVLGA 54
V V G
Sbjct: 527 VIVAGT 532
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 43.6 bits (102), Expect = 4e-05
Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 40/242 (16%)
Query: 46 GFKVAVLGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTN 96
K+A +G + + L P V L L D+ + + +
Sbjct: 7 RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNI------ 138
V AL G D V V P K G+ +
Sbjct: 66 GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125
Query: 139 --NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV 196
++ + + + CP A + +NP K+ +++G+ +
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE------KVVGLCNV-P 178
Query: 197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGG 256
+ VA++LG+D V + G + V L + +T ID + ++G
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV---EVTEKVIDLVAHPDRSGV 235
Query: 257 TE 258
T
Sbjct: 236 TM 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 40/292 (13%), Positives = 73/292 (25%), Gaps = 104/292 (35%)
Query: 4 PTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKG----GSPGF-KVAVLGAA--- 55
NQ A+ P L++ L + AK G G K +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLR---QALLELR-PAKNVLIDGVLGSGK-TWVALDVCL 172
Query: 56 ---------GGI-----GQ---PLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----- 93
I P +L + L+ + P T+ H
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-------DPNWTSRSDHSSNIKL 225
Query: 94 ---DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI 150
A +R L + E+ L +V+ ++ NA +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL----LVL-------------LNVQ--NAKAWNAF--NL 264
Query: 151 AKCCPKAIV----NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV 206
C K ++ +++ +++ + T P + + + +
Sbjct: 265 -SC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----------LLKY 310
Query: 207 LGLD----PREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQN 254
L PREV +T P S+ I N
Sbjct: 311 LDCRPQDLPREV----------LTTNPRR------LSIIAESIRDGLATWDN 346
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 38.2 bits (88), Expect = 0.002
Identities = 27/202 (13%), Positives = 57/202 (28%), Gaps = 39/202 (19%)
Query: 46 GFKVAVLGAAGGI-GQPLAMLMKINPLVSV--LHLYDV----VNTPGVTADISHMDTNAV 98
++AV+G + + L+ I+ V + + YD+ D V
Sbjct: 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKV 61
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI-------- 150
+ E A+ VI G D+ + G++ G+
Sbjct: 62 LISD----TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALR 117
Query: 151 -----------AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV-VR 198
+ A + +NP + + +G + +V +
Sbjct: 118 AFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE------KFIG--LCNVPIN 169
Query: 199 ANTFVAEVLGLDPREVDVPVVG 220
+AE+ +V + G
Sbjct: 170 FIREIAEMFSARLEDVFLKYYG 191
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 36.1 bits (83), Expect = 0.012
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 48 KVAVLGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTN--AVVRG-FL 103
+V ++G G IG+ + + + VL +VV+ + + ++
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 65
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINA 140
Q+L DAL +D+VI + L + A
Sbjct: 66 DHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA 102
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 35.4 bits (82), Expect = 0.012
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 48 KVAVLGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
+V V+GA G + + L L + V ++ + +V L ++
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAM-----VRNEEQGPELRERGASDIVVANL-EE 76
Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTR 132
A +D V+ AG G +
Sbjct: 77 DFSHAFASIDAVVFAAGSGPHTGADK 102
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 35.9 bits (82), Expect = 0.013
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 3/111 (2%)
Query: 48 KVA-VLGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ 105
VA ++G G IG LA +L + +Y V A N V
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR-PAWHEDNPINYVQCDISDP 60
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ L+ + V V T + N+ + + + + + CP
Sbjct: 61 DDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPN 111
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 35.3 bits (80), Expect = 0.019
Identities = 44/217 (20%), Positives = 76/217 (35%), Gaps = 55/217 (25%)
Query: 48 KVAVLGAAGGIGQPLAMLMKI------NPLVSVLHLYDV----VNTPGVTADISHMDTNA 97
K++++GA G + L ++ I + + +++ DV +N + A + N+
Sbjct: 14 KISIIGA-GSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNS 72
Query: 98 VVRGFLGQQQLEDALTGMDIVI--IPAGVPRKPGMTRDDL-------------------- 135
V+ + L++A+ G D +I PR
Sbjct: 73 PVK-IVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQE 131
Query: 136 FNINAGIVKTL------------CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY 183
N+ + L E + K PKA + +NPV E+ + V +
Sbjct: 132 LNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPV-------FEITQAVRRW 184
Query: 184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG 220
++G V V E L LDP EVD V G
Sbjct: 185 TGANIVG--FCHGVAGVYEVFEKLDLDPEEVDWQVAG 219
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 33.6 bits (77), Expect = 0.051
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 48 KVAVLGAAGGIGQPL--AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ 105
V +LGA G I + + + K ++ P ++ ++ L
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLF-----ARQPAKIHKPYPTNSQIIMGDVLNH 79
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTR 132
L+ A+ G DIV
Sbjct: 80 AALKQAMQGQDIVYANLTGEDLDIQAN 106
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 33.3 bits (76), Expect = 0.067
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 48 KVAVLGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
K+ + G G IG + +K+ V + T + + + V +
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLL-DEFQSLGAIIVKGELDEHE 71
Query: 107 QLEDALTGMDIVIIPAGVP 125
+L + + +D+VI P
Sbjct: 72 KLVELMKKVDVVISALAFP 90
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 33.4 bits (76), Expect = 0.071
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 48 KVAVLGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-- 104
K+ + G G IG+ + + + + ++ + + + V G
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 105 --QQQLEDALTGMDIVIIPAGVP 125
+++ L +DIVI P
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFP 88
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 32.6 bits (74), Expect = 0.15
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 48 KVAVLGAAGGIGQPL--AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA---VVRG- 101
K+ +LG G IG+ + A + NP +++ P ++ + ++ G
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 102 FLGQQQLEDALTGMDIVIIPAG 123
+ L A+ +DIVI AG
Sbjct: 64 INDHETLVKAIKQVDIVICAAG 85
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 32.3 bits (73), Expect = 0.18
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 44 SPGFKVAVLGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG- 101
SP +V + GA G IGQ +A + + +L + + D A++
Sbjct: 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYG 67
Query: 102 -FLGQQQLEDALTGMDIVII 120
Q+ +E L +I I+
Sbjct: 68 LINEQEAMEKILKEHEIDIV 87
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 31.3 bits (71), Expect = 0.28
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
V +LGA+G G+ L + L S + L + + ++ + N V F
Sbjct: 20 SVFILGASGETGRVLLKEILEQGLFSKVTL--IGRRKLTFDEEAYKNVNQEVVDFEKLDD 77
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
A G D+ G R + ++ V E +AK NL+S
Sbjct: 78 YASAFQGHDVGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAE-LAKAGGCKHFNLLS 131
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 31.1 bits (70), Expect = 0.30
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
+ +LGAAG I Q L + + + + T I H + F
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66
Query: 108 LEDALTGMDIVIIPAG 123
LE A+T ++V + A
Sbjct: 67 LEQAVTNAEVVFVGAM 82
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 31.2 bits (71), Expect = 0.34
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 24/166 (14%)
Query: 15 IAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSV 74
+++ E + G KV V+G G IG +L + L
Sbjct: 154 DIEK----SIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVW 208
Query: 75 LHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDD 134
+ + V + G +L+D++ D++I G
Sbjct: 209 M--ANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD--------- 257
Query: 135 LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
V L I ++ L + +VP+ + +++
Sbjct: 258 --------VNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEI 295
>3frw_A Putative Trp repressor protein; structural genomics, APC21159,
PSI-2, P structure initiative; 2.05A {Ruminococcus obeum
atcc 29174} PDB: 3g1c_A
Length = 107
Score = 29.7 bits (67), Expect = 0.43
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 240 LTPTEIDYLTDRIQ------NGGT-EVVEAKTGAGSATLS 272
T E+ L+ R + + T + KTGA +AT+S
Sbjct: 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATIS 76
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR
like protein, struc genomics, transcription; 1.60A
{Staphylococcus aureus}
Length = 119
Score = 29.4 bits (66), Expect = 0.54
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 240 LTPTEIDYLTDRIQ------NGGT-EVVEAKTGAGSATLS 272
T EI L+ R+Q G T +E ++GA +AT+S
Sbjct: 54 CTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATIS 93
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 30.4 bits (69), Expect = 0.59
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 17/83 (20%)
Query: 48 KVAVLGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGF 102
++ V GAAG +G+ + L + ++ + L + V D++ +
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADAN-------- 56
Query: 103 LGQQQLEDALTGMDIVIIPAGVP 125
+ + G D ++ G+
Sbjct: 57 ----AVNAMVAGCDGIVHLGGIS 75
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 30.0 bits (68), Expect = 0.81
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 46 GFKVAVLGAAGGIGQPLAMLM-KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
G K V+ + +G+PLA L+ V + + + + + + G
Sbjct: 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDV-NNIQKFTRGESLKLNKHHVEDLGEYS 235
Query: 105 QQQLEDALTGMDIVIIPAGVPR---KPGMTRDDLFNINAGIVKTLCEGIAK 152
+ L+ D+VI ++ IN K + + +
Sbjct: 236 EDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKE 286
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 30.2 bits (68), Expect = 0.85
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 48 KVAVLGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNA---VVRG-F 102
++ ++GA G IG+ +A + + +L ++ A + + +V G
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 103 LGQQQLEDALTGMDIVI 119
L +A+ +D+VI
Sbjct: 66 DDHASLVEAVKNVDVVI 82
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 29.2 bits (66), Expect = 1.2
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 48 KVAVLGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
K+A+ GA G G ++ V+VL V + VV L
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSSRLPSEGPRPAHVVVGDVLQAA 59
Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDD 134
++ + G D VI+ G T
Sbjct: 60 DVDKTVAGQDAVIVLLGTRNDLSPTTVM 87
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 28.8 bits (65), Expect = 1.7
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 48 KVAVLGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
K+ ++G+ G +G+ L L + + +++ +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAG-----ARKVEQVPQYNNVKAVHFD-VDWTPE 55
Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNIN 139
++ L GMD +I +G K + D +
Sbjct: 56 EMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVK 88
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 28.5 bits (64), Expect = 2.0
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 15/119 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
+V + GA G G+ L + P V P A H + V +
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEP------TLAKVIAPARKALAEHPRLDNPVGPL--AEL 58
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN---LIS 163
L +D G K + + ++ + + K + ++S
Sbjct: 59 LPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLA----VGKRALEMGARHYLVVS 113
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 28.4 bits (64), Expect = 2.7
Identities = 25/163 (15%), Positives = 44/163 (26%), Gaps = 39/163 (23%)
Query: 39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP-------GVT 87
R+ VLG G +G ++K++ + L D + T
Sbjct: 166 RSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT 224
Query: 88 ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC 147
S + + D MD + G P K
Sbjct: 225 YVDSRQTP---------VEDVPDVYEQMDFIYEATGFP------------------KHAI 257
Query: 148 EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
+ + P + L+ P + + A F + K L+G
Sbjct: 258 QSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVG 300
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 28.4 bits (63), Expect = 3.2
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 85 GVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRD 133
GVT IS + + G + L L+ PAGV G
Sbjct: 92 GVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNARPAGVKVHGGAVIL 142
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.7 bits (62), Expect = 3.7
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 35/96 (36%)
Query: 48 KVAVLGAAGGIGQPLAMLM---------------KINPLVSVLHLYDVVNTPGVTADISH 92
K+ ++GA+G +G L KI L + AD+S
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKV--------KKADVSS 57
Query: 93 MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP 128
+D + + G D VI
Sbjct: 58 LDE------------VCEVCKGADAVISAFNPGWNN 81
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 28.1 bits (63), Expect = 4.1
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 58 IGQPLAML-MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
G+ +AM+ MK LV++L + V G + + +
Sbjct: 438 AGKYIAMVMMKA-ILVTLLRRFHVKTLQGQCVESIQKIHDLSLH 480
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 26.6 bits (59), Expect = 4.3
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
++ + V++ +AE L + E+
Sbjct: 14 VNQVNLSEIKQVLKQQ--LAEALYTEESEIA 42
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 27.9 bits (62), Expect = 5.1
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRL 188
I+NL N + VGT+ L
Sbjct: 454 IMNLQYTEANRYD------YVHVGTWHEGVL 478
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 27.5 bits (61), Expect = 5.2
Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 11/119 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV---VNTPGVTADISHMDTNAVVRG-FL 103
V V GA+G GQ + L + V + I V G
Sbjct: 6 TVLVTGASGRTGQIV-----YKKLKEGSDKFVAKGLVRSAQGKEKIGGEAD--VFIGDIT 58
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
+ A G+D ++I K D + + + N I
Sbjct: 59 DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 5.4
Identities = 22/187 (11%), Positives = 41/187 (21%), Gaps = 60/187 (32%)
Query: 12 IARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAV----------LGAAGGIGQP 61
+ + H + ES+ + M + G S G V GAAG
Sbjct: 1337 LGVASFHGTSTKANDKNESATINEM-MKHLGRSEGNPVIGVFQKFLTGHPKGAAGAW-MM 1394
Query: 62 LAMLMKIN-----PLVS------VLHLYDVVNTPGVTADISHMD-----------TNAVV 99
L +N + +L ++ V P T +
Sbjct: 1395 NGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQA 1454
Query: 100 --------------------------RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRD 133
R + + + + + P + D
Sbjct: 1455 IVVHPDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEED 1514
Query: 134 DLFNINA 140
+ A
Sbjct: 1515 VYLDPLA 1521
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 27.3 bits (61), Expect = 5.8
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 48 KVAVLGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPG-------VTADISHMDTNAVV 99
++ V GAAGG+G + L + V + D+V+ V D++ D AV
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLS---DIVDLGAAEAHEEIVACDLA--DAQAV- 57
Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNIN 139
D + D +I GV + +D+ N
Sbjct: 58 ---------HDLVKDCDGIIHLGGVSVE--RPWNDILQAN 86
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 27.4 bits (61), Expect = 6.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD 89
AV+ AAGG + + K +P L + N PG T D
Sbjct: 308 AVVIAAGGFAKNNERVSKYDPK---LKGFKATNHPGATGD 344
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 27.2 bits (61), Expect = 7.7
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
++ V+GA G +G+ L ++ V + + + V D S + + G
Sbjct: 23 RLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASIL-IGSDFLGVRITDD 81
Query: 108 LEDALTGMDIVI 119
E A + + ++
Sbjct: 82 PESAFSNTEGIL 93
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 26.8 bits (60), Expect = 7.8
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
+VA+ GA G +G+ L V + + + + +D + A G Q
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGEL-AGAGKTGVTVQSS 65
Query: 108 LEDALTGMDIVI 119
L+ D+ I
Sbjct: 66 LDAVKDDFDVFI 77
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 26.8 bits (60), Expect = 7.9
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
K+A+ GA+G +G+ L + P +++ D +P + D G
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQT--GVALTDD 66
Query: 108 LEDALTGMDIVI 119
+E D +I
Sbjct: 67 IERVCAEADYLI 78
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 26.9 bits (59), Expect = 8.8
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 240 LTPTEIDYLTDRIQ-NGGTEVVEAKTGAGSATLSMAYAAAKF 280
+ P + Y+ ++ N V+E TG+G+ ++ A +
Sbjct: 75 IYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEV 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,824,209
Number of extensions: 315773
Number of successful extensions: 1288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 121
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)