BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021933
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
Length = 396
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 30/142 (21%)
Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMI---- 227
T HQI +D+ RT+ + Y+ + + L IL ++A GY QG++DL +P
Sbjct: 86 TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 145
Query: 228 ------------------------ILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQ 263
+ + EAD FWC +L+ ++ N+ G+ Q
Sbjct: 146 TEYLPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQITDNY--IHGQPGILRQ 203
Query: 264 LSNLASITQRHWAEVTISLRSE 285
+ NL+ + +R A++ ++E
Sbjct: 204 VKNLSQLVKRIDADLYNHFQNE 225
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 410
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 30/142 (21%)
Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMI---- 227
T HQI +D+ RT+ + Y+ + + L IL ++A GY QG++DL +P
Sbjct: 106 TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 165
Query: 228 ------------------------ILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQ 263
+ + EAD FWC +L+ ++ N+ G+ Q
Sbjct: 166 TEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY--IHGQPGILRQ 223
Query: 264 LSNLASITQRHWAEVTISLRSE 285
+ NL+ + +R A++ ++E
Sbjct: 224 VKNLSQLVKRIDADLYNHFQNE 245
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain
pdb|3QYE|B Chain B, Crystal Structure Of Human Tbc1d1 Rabgap Domain
Length = 331
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 174 HQIGLDVIRTDRTLVFYEKQENLSKL--WDILAVYAWVDRDVGYCQGMSDLCSPMIILLE 231
H I +D+ RT T ++ Q +L ++IL Y+ +D++VGYCQG+S + +++L
Sbjct: 105 HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLS-FVAGILLLHM 163
Query: 232 NEADAFWCFERLM--RRLRGNFR 252
+E +AF + LM LR +R
Sbjct: 164 SEEEAFKMLKFLMFDMGLRKQYR 186
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap
Domain
Length = 301
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 174 HQIGLDVIRTDRTLVFYEKQENLSKL--WDILAVYAWVDRDVGYCQGMSDLCSPMIILLE 231
H I +D+ RT T ++ Q +L +++L Y+ +D++VGYCQG+S + +++L
Sbjct: 95 HAILVDLGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGIS-FVAGVLLLHM 153
Query: 232 NEADAFWCFERLMRRL--RGNFRCTESSVGVET-QLSNLASITQR----HWAEVTIS 281
+E AF + LM L R +R S+ ++ QLS L R H E IS
Sbjct: 154 SEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEIS 210
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
Length = 346
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 25/125 (20%)
Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIIL-- 229
T QI +D+ RT+ + +++ IL ++A GY QG++DL +P ++
Sbjct: 105 TYRQIHIDIPRTNPLIPLFQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFL 164
Query: 230 -------LEN--------------EADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLA 268
+EN EAD+FWC +L+ ++ N+ T + G++ ++ L
Sbjct: 165 SEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNY--TFAQPGIQKKVKALE 222
Query: 269 SITQR 273
+ R
Sbjct: 223 ELVSR 227
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
Tbc1 Domain Family Member 14
Length = 334
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 172 TLHQIGLDVIRTDRTL-VFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILL 230
+L I LD+ RT L +F + L IL Y DVGY QGMS + + +I+ L
Sbjct: 109 SLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL 168
Query: 231 ENEADAFWCFERLMRR 246
+ ADAF F L+ +
Sbjct: 169 DT-ADAFIAFSNLLNK 183
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
Length = 310
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 2/132 (1%)
Query: 54 KTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDXXXXXXXXXXLQYSAWKEECHQIFPV 113
K LS + + G+ ++R EVW+ L GC++ ++ D Q S + H+ FP
Sbjct: 24 KGLSTLVKSGVPEALRAEVWQLLAGCHDNQAXLDRYRILITKDSAQESVITRDIHRTFPA 83
Query: 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTL 173
K T E I + + + G S + LL H P ++ +
Sbjct: 84 HDYFK-DTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHXPEEQAFCVLVKIX 142
Query: 174 HQIGL-DVIRTD 184
+ GL D+ R +
Sbjct: 143 YDYGLRDLYRNN 154
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 199 LWDILAVYAWVDRDVGYCQGMSDLCSPMII 228
L+ I Y+ D D+GYCQG S L + +++
Sbjct: 98 LYKICKAYSVYDEDIGYCQGQSFLAAVLLL 127
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 31/128 (24%)
Query: 172 TLHQIGLDVIR-TDRTLVFYEKQENLSKLWD-ILAVYAWVDRDVGYCQGMSDLCSPMII- 228
T QI +D+ R + L+ Q ++++++ IL ++A GY QG++DL +P +
Sbjct: 104 TYRQIHIDIPRMSPEALIL---QPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVV 160
Query: 229 -----------------------LLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLS 265
L EAD +WC +L+ ++ N+ T + G++ ++
Sbjct: 161 FICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNY--TFAQPGIQMKVK 218
Query: 266 NLASITQR 273
L + R
Sbjct: 219 MLEELVSR 226
>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
Deoxyhypusine Synthase
Length = 361
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 131 PIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTL--- 187
PI D +V+++ G+ + SKM+ L + V W H TD +L
Sbjct: 177 PILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDM 236
Query: 188 VFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIIL 229
+F+ +N + DI+ ++ Q + C+ MIIL
Sbjct: 237 IFFHSYKNPGLVLDIVEDLRLIN-----TQAIFAKCTGMIIL 273
>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
Strength, Low Ph Crystal Form
pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
Length = 369
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 131 PIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTL--- 187
PI D +V+++ G+ + SKM+ L + V W H TD +L
Sbjct: 185 PILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDM 244
Query: 188 VFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIIL 229
+F+ +N + DI+ ++ Q + C+ MIIL
Sbjct: 245 IFFHSYKNPGLVLDIVEDLRLIN-----TQAIFAKCTGMIIL 281
>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1Y9E|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
Length = 330
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 33 KTLSARKWQAAFTPEGQLDIGKTLSRIHRGG 63
K LS ++WQ A P G + LS+I GG
Sbjct: 211 KALSKQQWQGAVDPVGGKQLASLLSKIQYGG 241
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 138 LQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK---QE 194
+QE ++ + +S +K +L G D++++ D I +R+ ++ K Q
Sbjct: 270 IQEIDAALKRASKTYMKGIL--GYTDEELVS---------ADFINDNRSSIYDSKATLQN 318
Query: 195 NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPM 226
NL K + +W D + GY + DL M
Sbjct: 319 NLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 138 LQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK---QE 194
+QE ++ + +S +K +L G D++++ D I +R+ ++ K Q
Sbjct: 270 IQEIDAALKRASKTYMKGIL--GYTDEELVS---------ADFINDNRSSIYDSKATLQN 318
Query: 195 NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPM 226
NL K + +W D + GY + DL M
Sbjct: 319 NLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,227,115
Number of Sequences: 62578
Number of extensions: 358746
Number of successful extensions: 699
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 22
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)