Query 021933
Match_columns 305
No_of_seqs 160 out of 1547
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 4E-36 8.7E-41 262.4 19.2 237 39-302 11-289 (370)
2 KOG2058 Ypt/Rab GTPase activat 100.0 9.1E-37 2E-41 283.4 15.9 197 37-303 123-329 (436)
3 smart00164 TBC Domain in Tre-2 100.0 5.3E-36 1.2E-40 257.5 15.4 176 60-303 1-179 (199)
4 KOG2224 Uncharacterized conser 100.0 7.9E-34 1.7E-38 256.9 11.6 241 8-301 379-654 (781)
5 KOG2197 Ypt/Rab-specific GTPas 100.0 4.2E-33 9.1E-38 266.1 13.2 285 15-301 28-366 (488)
6 KOG1092 Ypt/Rab-specific GTPas 100.0 6.4E-32 1.4E-36 244.3 11.2 197 50-303 176-397 (484)
7 COG5210 GTPase-activating prot 100.0 1.4E-30 3.1E-35 252.4 15.9 201 35-303 181-389 (496)
8 KOG2223 Uncharacterized conser 100.0 7.8E-29 1.7E-33 224.6 15.9 192 53-302 291-485 (586)
9 PF00566 RabGAP-TBC: Rab-GTPas 99.9 5.2E-27 1.1E-31 203.2 15.5 130 172-303 46-176 (214)
10 KOG2222 Uncharacterized conser 99.9 3.8E-25 8.2E-30 202.7 12.7 182 52-303 159-343 (848)
11 KOG4347 GTPase-activating prot 99.9 3.7E-25 8E-30 209.9 10.6 196 38-304 174-372 (671)
12 KOG2221 PDZ-domain interacting 99.9 7.3E-25 1.6E-29 183.0 1.9 215 10-297 48-267 (267)
13 KOG4436 Predicted GTPase activ 99.9 1.2E-21 2.6E-26 189.0 11.4 138 163-303 612-753 (948)
14 KOG1091 Ypt/Rab-specific GTPas 99.8 1.6E-20 3.5E-25 175.8 11.9 204 66-303 27-285 (625)
15 KOG1102 Rab6 GTPase activator 99.8 4.8E-20 1E-24 173.3 8.9 125 174-302 187-314 (397)
16 KOG1093 Predicted protein kina 99.8 2.4E-19 5.3E-24 168.2 11.6 132 172-303 390-522 (725)
17 KOG2595 Predicted GTPase activ 99.6 2E-15 4.4E-20 134.2 8.3 128 173-303 97-228 (395)
18 KOG4436 Predicted GTPase activ 99.4 5.1E-13 1.1E-17 130.0 11.3 183 55-304 176-368 (948)
19 KOG1648 Uncharacterized conser 99.3 4.6E-14 1E-18 130.8 -2.8 188 22-277 519-706 (813)
20 KOG3636 Uncharacterized conser 97.6 0.00033 7.2E-09 65.5 8.7 103 195-303 91-195 (669)
21 KOG2224 Uncharacterized conser 95.8 0.0027 5.8E-08 59.3 0.3 33 213-245 566-598 (781)
22 KOG2801 Probable Rab-GAPs [Int 92.0 1.1 2.3E-05 40.3 8.6 51 194-244 109-159 (559)
23 KOG2197 Ypt/Rab-specific GTPas 85.5 0.41 8.8E-06 46.8 1.5 76 35-111 148-224 (488)
24 PF08109 Antimicrobial14: Lact 38.2 23 0.0005 19.8 1.3 15 213-227 3-17 (31)
25 PF10815 ComZ: ComZ; InterPro 33.4 89 0.0019 20.7 3.7 37 267-303 6-42 (56)
26 KOG4631 NADH:ubiquinone oxidor 25.7 59 0.0013 24.0 2.1 26 52-77 25-51 (100)
27 COG2178 Predicted RNA-binding 25.5 4.2E+02 0.0091 22.7 7.4 66 215-280 113-187 (204)
28 PRK10878 hypothetical protein; 21.9 87 0.0019 22.1 2.4 23 262-284 22-44 (72)
29 PF04753 Corona_NS2: Coronavir 21.6 40 0.00087 25.1 0.6 25 193-217 16-40 (109)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=4e-36 Score=262.38 Aligned_cols=237 Identities=26% Similarity=0.371 Sum_probs=182.2
Q ss_pred HHHhhcCC-CCCCCHHHHHHHHHhCCCC--CCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 021933 39 KWQAAFTP-EGQLDIGKTLSRIHRGGIH--PSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG 115 (305)
Q Consensus 39 ~W~~~~~~-~~~i~~~~~~~~~~~~GIp--~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 115 (305)
..+..+.. +..+|..+ ++.++..|+| .++|+.+|++|||++|++.+.|+ ..+.++|+.|...+.+... .++
T Consensus 11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~--s~La~~R~~Y~q~i~e~v~---epg 84 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWT--SFLAKKRSLYKQFIEEIVD---EPG 84 (370)
T ss_pred hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhH--HHHHHHHHHHHHHHHHhcc---Ccc
Confidence 44445544 34478877 8888999999 78999999999999999988775 6778899999988876432 121
Q ss_pred CCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCc--
Q 021933 116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ-- 193 (305)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~-- 193 (305)
. ++....+..++ +.-+.|. +.+.. +.|..+.+..+...||++||.||.|+..+|+..
T Consensus 85 ~-~~~~~~v~~~D-~~~dhPl-----------s~~~~--------sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~ 143 (370)
T KOG4567|consen 85 K-KDNSKKVDSND-TDEDHPL-----------SLGPT--------SDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASS 143 (370)
T ss_pred c-cccccccccCc-ccccCCC-----------CCCch--------hhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccc
Confidence 1 00000000011 0000011 11111 237788888899999999999999999999862
Q ss_pred -c------------------------hHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhccc----------ChHHHHH
Q 021933 194 -E------------------------NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------NEADAFW 238 (305)
Q Consensus 194 -~------------------------~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~----------~E~daF~ 238 (305)
+ +.....|||+.||..||.||||||||+|+|||++||. .|+|||+
T Consensus 144 ~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFF 223 (370)
T KOG4567|consen 144 YPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFF 223 (370)
T ss_pred cccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHH
Confidence 1 1234578999999999999999999999999999995 4999999
Q ss_pred HHHHHHHHhhhcccCC--CChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHh
Q 021933 239 CFERLMRRLRGNFRCT--ESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYI 302 (305)
Q Consensus 239 ~f~~Lm~~~~~~f~~~--~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~ 302 (305)
||+.||..++++|..+ ++.-||...+..+.++|+..|-+||.||+..+|....+.+.|+..++.
T Consensus 224 CF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLs 289 (370)
T KOG4567|consen 224 CFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLS 289 (370)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHh
Confidence 9999999999999864 566789999999999999999999999999999999888888877764
No 2
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-37 Score=283.39 Aligned_cols=197 Identities=24% Similarity=0.409 Sum_probs=163.4
Q ss_pred HHHHHhhcCCC-------CCCCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 021933 37 ARKWQAAFTPE-------GQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQ 109 (305)
Q Consensus 37 ~~~W~~~~~~~-------~~i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~ 109 (305)
..+|.-.+.++ .-......+++++++|||+++|+.||..+.|.... ...+..|+.+++....
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~~ 191 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGDE 191 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCCC
Confidence 45677776653 11223345899999999999999999999993111 1115677777664110
Q ss_pred hccccCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCc-h
Q 021933 110 IFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTL-V 188 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~-~ 188 (305)
++ .+..++|+.|+.||+|++ +
T Consensus 192 ------------------------------------------------------~~----~~~~~qI~~DL~RTfP~n~~ 213 (436)
T KOG2058|consen 192 ------------------------------------------------------KK----SPVVKQIKLDLPRTFPDNFK 213 (436)
T ss_pred ------------------------------------------------------cc----chHHHHHHhccccccCCCcc
Confidence 00 036789999999999999 7
Q ss_pred hccCc--chHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHH
Q 021933 189 FYEKQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSN 266 (305)
Q Consensus 189 ~f~~~--~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~ 266 (305)
.|... .+..+|+|||.|||.+||.||||||||.|||++|+++..|++|||||+.+++++.+.|+ ++.+.|.+.+..+
T Consensus 214 ~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yy-t~nL~g~qvDQ~V 292 (436)
T KOG2058|consen 214 GFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYY-TPNLIGSQVDQKV 292 (436)
T ss_pred cCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhc-CchhhhhhccHHH
Confidence 88765 34899999999999999999999999999999999997799999999999999999855 5689999999999
Q ss_pred HHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 267 LASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 267 l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
|+.+++..+|+|+.||+..++....++..||++.|.-
T Consensus 293 L~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d 329 (436)
T KOG2058|consen 293 LRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVD 329 (436)
T ss_pred HHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcc
Confidence 9999999999999999999999999999999999863
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=5.3e-36 Score=257.49 Aligned_cols=176 Identities=29% Similarity=0.493 Sum_probs=152.3
Q ss_pred HhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCcccCCCCcCCCccccc
Q 021933 60 HRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQ 139 (305)
Q Consensus 60 ~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (305)
+++|||+++|+.||+.++|+.+...+ ..+..|++++++....
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~----------------------------- 42 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPK----------------------------- 42 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCC-----------------------------
Confidence 36899999999999999998765432 1356788887763210
Q ss_pred cCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccC--cchHHHHHHHHHHHHhhCCCCCCCc
Q 021933 140 ETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK--QENLSKLWDILAVYAWVDRDVGYCQ 217 (305)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~--~~~~~~L~~IL~~y~~~~p~igY~Q 217 (305)
+ ....++|++||.||+|++++|+. ..+++.|.|||.+|+.+||++||||
T Consensus 43 -----------------------~------~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~Q 93 (199)
T smart00164 43 -----------------------D------KSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQ 93 (199)
T ss_pred -----------------------C------hhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceec
Confidence 0 01357899999999999999986 3689999999999999999999999
Q ss_pred ChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHh-CCCCccCCChHH
Q 021933 218 GMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRS-ECLWSCSVENFH 296 (305)
Q Consensus 218 GM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~-~~i~~~~~~~~~ 296 (305)
||++|||+|+.++.+|++|||||+++|+.....|+ .+.++++...+..++.+|+..+|+|++||++ .++....+...|
T Consensus 94 Gm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W 172 (199)
T smart00164 94 GMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFY-LPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRW 172 (199)
T ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccC-CCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHH
Confidence 99999999999998899999999999998887764 5678899999999999999999999999996 999999999999
Q ss_pred HHHHHhh
Q 021933 297 FVTHYIS 303 (305)
Q Consensus 297 f~~~~~~ 303 (305)
|+++|..
T Consensus 173 ~~~lF~~ 179 (199)
T smart00164 173 FLTLFAR 179 (199)
T ss_pred HHHHHHh
Confidence 9999974
No 4
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.9e-34 Score=256.95 Aligned_cols=241 Identities=27% Similarity=0.492 Sum_probs=189.9
Q ss_pred CCCcccccCCCcccCCCCCCCCCCCC--CCCHHHHHh-hcCCCCCCCHH-HHHHHHHhCCCCCCchHHHHHHHhCCCCCC
Q 021933 8 PADSYYEVRPECTDVPKTRFKIKPGK--TLSARKWQA-AFTPEGQLDIG-KTLSRIHRGGIHPSIRGEVWEFLLGCYEPK 83 (305)
Q Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~--~l~~~~W~~-~~~~~~~i~~~-~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~ 83 (305)
|+..|...||+ +|+++.+++.+. +++..-|-. .+++.|+|..+ ++++.++++||..++|++||++||.+|...
T Consensus 379 pyr~f~i~rpe---l~~se~hpde~~~kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~e 455 (781)
T KOG2224|consen 379 PYRHFMICRPE---LKKSEMHPDEGDVKKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFE 455 (781)
T ss_pred chhheeeecCC---CCccccCCccchhhhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccc
Confidence 56667777887 888888888764 677777876 67778999654 667789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-hhccccCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCc
Q 021933 84 STFDEREEIRQRRRLQYSAWKEECH-QIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPL 162 (305)
Q Consensus 84 ~~~~~~~~~~~~~~~~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (305)
++.+.|...+..+|.+|+++.++-. ++. +
T Consensus 456 st~edr~al~~~krkey~eiqqkrlysms--------------------------------------------------p 485 (781)
T KOG2224|consen 456 STFEDRAALMDIKRKEYEEIQQKRLYSMS--------------------------------------------------P 485 (781)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCC--------------------------------------------------H
Confidence 9999999999999999999876522 222 2
Q ss_pred hhHHHHHHHHHHHHhhhhcccCCCchhccCc--chHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHH
Q 021933 163 DKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240 (305)
Q Consensus 163 ~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~--~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f 240 (305)
++...-|+.+.-.++|||.||+++++||.+. ++.++++|||..||.|||.+||.|||++++||.|+-+.+|.++||||
T Consensus 486 eeh~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcf 565 (781)
T KOG2224|consen 486 EEHIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCF 565 (781)
T ss_pred HHHHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhh
Confidence 3334445555556899999999999999875 67999999999999999999999888888887777666666666666
Q ss_pred HHHHHHhh--------------------------hcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCc--cCC
Q 021933 241 ERLMRRLR--------------------------GNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWS--CSV 292 (305)
Q Consensus 241 ~~Lm~~~~--------------------------~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~--~~~ 292 (305)
++||..+. ..|..++....+.+.+..++.||+...|..|+||.+.+-.. ..+
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellf 645 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLF 645 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHH
Confidence 66665321 45666777778999999999999999999999999855332 234
Q ss_pred ChHHHHHHH
Q 021933 293 ENFHFVTHY 301 (305)
Q Consensus 293 ~~~~f~~~~ 301 (305)
.-.|.+.+|
T Consensus 646 chrwlllcf 654 (781)
T KOG2224|consen 646 CHRWLLLCF 654 (781)
T ss_pred HHHHHHHHh
Confidence 444555544
No 5
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-33 Score=266.11 Aligned_cols=285 Identities=40% Similarity=0.641 Sum_probs=218.8
Q ss_pred cCCCcccCCCCCCCCCCCCCCCHHHHHhhcCCCCCCC-HHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHH
Q 021933 15 VRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLD-IGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIR 93 (305)
Q Consensus 15 ~~~~~~~~p~~~~~~~~~~~l~~~~W~~~~~~~~~i~-~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~ 93 (305)
..+.|...+.....+++.++++.++|++.|.+++... ..+.++.+..+||+|++|++||.+|+|+|+.+++.+++..+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r 107 (488)
T KOG2197|consen 28 SREPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLR 107 (488)
T ss_pred ccccccccCCcceeeccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHH
Confidence 4555665555777888889999999999999988875 677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC-ccccCCcccCCCCcC-----CCccccccC--------------------------
Q 021933 94 QRRRLQYSAWKEECHQIFPVVGSG-KFITAPVVTEDGQPI-----QDPLVLQET-------------------------- 141 (305)
Q Consensus 94 ~~~~~~Y~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~-------------------------- 141 (305)
..++.+|..|..++..+.+.++.. ...+..+..+.+.|. .+.....+.
T Consensus 108 ~~~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (488)
T KOG2197|consen 108 VARRPQYNELLLVCQMMKSTVGNGLSYVVSSVVSDNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVW 187 (488)
T ss_pred hhcccchHHHHHHcchhhhhhccccceeeeEEeecCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhh
Confidence 999999999999999888877766 333444444444442 000000000
Q ss_pred ------CCCCCCcc-------------hhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCcch--HHHHH
Q 021933 142 ------NSGISASS-------------SKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LSKLW 200 (305)
Q Consensus 142 ------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~~~--~~~L~ 200 (305)
.+...... .....|.-.....+............|.+||.||++.+.+|+...+ ...|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~ 267 (488)
T KOG2197|consen 188 KFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLV 267 (488)
T ss_pred hhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHH
Confidence 00000000 0000010000000000111223346699999999999999998877 99999
Q ss_pred HHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHHHHHHhhHHHHH
Q 021933 201 DILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTI 280 (305)
Q Consensus 201 ~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~ 280 (305)
.||.+|+.+++++||||||+++++|++.++.+|++|||||+++|+++..+|..+ ..|+.+++..+..+++..||.|++
T Consensus 268 ~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d--~~~~~~Ql~~~~~li~~~dp~l~~ 345 (488)
T KOG2197|consen 268 DILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRID--QSGMQTQLAQLSSLIQELDPRLYQ 345 (488)
T ss_pred HHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccc--cccHHHHhhhhhhhccccCHHHHh
Confidence 999999999999999999999999999999999999999999999999999975 459999999999999999999999
Q ss_pred HHHhCCCCccCCChHHHHHHH
Q 021933 281 SLRSECLWSCSVENFHFVTHY 301 (305)
Q Consensus 281 hl~~~~i~~~~~~~~~f~~~~ 301 (305)
||+..+...+.+.+-|.+.+|
T Consensus 346 hLe~~d~~~~~f~fr~l~v~f 366 (488)
T KOG2197|consen 346 HLEKLDAGDLFFCFRMLLVPF 366 (488)
T ss_pred hccccCCCccceeeehhhccc
Confidence 999888888888877777655
No 6
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-32 Score=244.32 Aligned_cols=197 Identities=24% Similarity=0.432 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCcccCCC
Q 021933 50 LDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDG 129 (305)
Q Consensus 50 i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (305)
+|.. +++.++|+|||...|+.+|++|+|+.|+++. -|+..++.++..|.+++.++...... .+.
T Consensus 176 id~~-~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~------------~~~- 239 (484)
T KOG1092|consen 176 IDLE-KLRKLCWNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTN------------GDE- 239 (484)
T ss_pred ccHH-HHHHHccCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCC------------ccc-
Confidence 4444 5999999999999999999999999999864 45577899999999999987642210 000
Q ss_pred CcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCcchHHHHHHHHHHHHhh
Q 021933 130 QPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWV 209 (305)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~~~~~~L~~IL~~y~~~ 209 (305)
+ ....+||.-|++|+.|+.++|+..-.++++.|||+.++.+
T Consensus 240 ---------------------------------~------~d~~rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwair 280 (484)
T KOG1092|consen 240 ---------------------------------D------QDTWRQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIR 280 (484)
T ss_pred ---------------------------------c------CccccccccCCCCCCccccchhhHHHHHHHHHHHHHHHHh
Confidence 0 1357899999999999999999999999999999999999
Q ss_pred CCCCCCCcChhhHHHHHHhccc-------------------------ChHHHHHHHHHHHHHhhhcccCCCChhhHHHHH
Q 021933 210 DRDVGYCQGMSDLCSPMIILLE-------------------------NEADAFWCFERLMRRLRGNFRCTESSVGVETQL 264 (305)
Q Consensus 210 ~p~igY~QGM~~l~a~ll~v~~-------------------------~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l 264 (305)
+|..||+||.++++.|++.++. .|+|||||+..|++.++++|.+ ..+||++.+
T Consensus 281 hpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtf--aQpGIq~kV 358 (484)
T KOG1092|consen 281 HPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTF--AQPGIQRKV 358 (484)
T ss_pred cccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhh--cChhHHHHH
Confidence 9999999999999999998872 4999999999999999999998 567999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 265 SNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 265 ~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
+.|+.|++.+|+.|++||+++|+....+++-|+=.+++.
T Consensus 359 ~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmR 397 (484)
T KOG1092|consen 359 KNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMR 397 (484)
T ss_pred HHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 999999999999999999988888777777777766653
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=252.44 Aligned_cols=201 Identities=26% Similarity=0.459 Sum_probs=163.7
Q ss_pred CCHHHHHhhcCCCCC-C---CHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021933 35 LSARKWQAAFTPEGQ-L---DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQI 110 (305)
Q Consensus 35 l~~~~W~~~~~~~~~-i---~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~ 110 (305)
.....|.+.+...+. . ...+ ++.+.+.|||+.+|+.||..++|..+... .....|..+...+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gip~~~r~~vw~~~~~~~~~~~----------~~~~~y~~~~~~~~~~ 249 (496)
T COG5210 181 AADKLWISYLDPNPLSFLPVQLSK-LRELIRKGIPNELRGDVWEFLLGIGFDLD----------KNPGLYERLLNLHREA 249 (496)
T ss_pred HHHHHHHHHHhcccchhhhhhHHH-HHHHHHhcCChHhhhhhHHHHhccchhhc----------cCchHHHHHHHHHHhc
Confidence 345567777776555 2 2334 77778999999999999999999876653 2345566655543321
Q ss_pred ccccCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhc
Q 021933 111 FPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFY 190 (305)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f 190 (305)
.. + . ....++|++||.||+|.+..|
T Consensus 250 ~~------------------~--------------------------------~-----~~~~~~i~~Dl~rt~~~~~~f 274 (496)
T COG5210 250 KI------------------P--------------------------------T-----QEIISQIEKDLSRTFPDNSLF 274 (496)
T ss_pred CC------------------C--------------------------------c-----HHHHHHHHccccccccccccc
Confidence 00 0 0 025789999999999999999
Q ss_pred cCcchHHH--HHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHH--hhhcccCCCChhhHHHHHHH
Q 021933 191 EKQENLSK--LWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSN 266 (305)
Q Consensus 191 ~~~~~~~~--L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~--~~~~f~~~~~~~gi~~~l~~ 266 (305)
+....... |+|||.+|+.+||++|||||||+|+|+||.+|..|++|||||++||+. +...|. ..+.|+..++.+
T Consensus 275 ~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~--~~~~G~~~~~~~ 352 (496)
T COG5210 275 QTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFL--KNLSGLHRDLKV 352 (496)
T ss_pred cCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcc--cCCcHHHHHHHH
Confidence 88766555 999999999999999999999999999999997799999999999993 445555 467899999999
Q ss_pred HHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 267 LASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 267 l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
+..+++..+|+||.||..+++....+.+.||+++|+.
T Consensus 353 l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~ 389 (496)
T COG5210 353 LDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVR 389 (496)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999973
No 8
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=7.8e-29 Score=224.58 Aligned_cols=192 Identities=23% Similarity=0.345 Sum_probs=148.9
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCcccCCCCcC
Q 021933 53 GKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPI 132 (305)
Q Consensus 53 ~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (305)
++-++.++|.|||+++|++||.+..| +..+.+.+. |.....+..+..-.
T Consensus 291 SrR~relWwQGiP~~VRGkvW~laIG-Nel~it~el-----------fd~~la~Aker~ak------------------- 339 (586)
T KOG2223|consen 291 SRRVRELWWQGIPPSVRGKVWSLAIG-NELNITYEL-----------FDIALARAKEREAK------------------- 339 (586)
T ss_pred hHHHHHHHHccCChhhcchhhHhhhC-cccccCHHH-----------HHHHHHHHHHHHHH-------------------
Confidence 44588999999999999999999999 456655544 33333222211000
Q ss_pred CCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccC-cchHHHHHHHHHHHHhhCC
Q 021933 133 QDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK-QENLSKLWDILAVYAWVDR 211 (305)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~-~~~~~~L~~IL~~y~~~~p 211 (305)
.+++..+ +...+.+....+|..|+.||||.+.+|+. ++..+.|..||.||++|+|
T Consensus 340 ----~~aeq~~--------------------~sa~~re~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRp 395 (586)
T KOG2223|consen 340 ----SLAEQMS--------------------NSAADREASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRP 395 (586)
T ss_pred ----HHHhhcc--------------------cchhhhhcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecC
Confidence 0000000 01112235678899999999999999986 5889999999999999999
Q ss_pred CCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHH--hhhcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCc
Q 021933 212 DVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWS 289 (305)
Q Consensus 212 ~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~--~~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~ 289 (305)
|+||+|||++|+|+|++.| ++++||.||.+|+++ ....|..+ ...|......|+..+++..|+|+.||++..+-.
T Consensus 396 DvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~d--~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~P 472 (586)
T KOG2223|consen 396 DVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRVD--HSSMLSYFATFEVFLEENLPKLFTHLKKLELTP 472 (586)
T ss_pred ccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhcC--cHHHHHHHHHHHHHHHhccHHHHHHHHhccCCC
Confidence 9999999999999999999 999999999999996 34556653 447889999999999999999999999988888
Q ss_pred cCCChHHHHHHHh
Q 021933 290 CSVENFHFVTHYI 302 (305)
Q Consensus 290 ~~~~~~~f~~~~~ 302 (305)
-.+...|-.++|+
T Consensus 473 Diylidwiftlys 485 (586)
T KOG2223|consen 473 DIYLIDWIFTLYS 485 (586)
T ss_pred chhhHHHHHHHHh
Confidence 8888888877775
No 9
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.95 E-value=5.2e-27 Score=203.24 Aligned_cols=130 Identities=29% Similarity=0.493 Sum_probs=115.9
Q ss_pred HHHHHhhhhcccCCCchhccCcchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHH-HHhhhc
Q 021933 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLM-RRLRGN 250 (305)
Q Consensus 172 ~~~~I~kDv~RT~~~~~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm-~~~~~~ 250 (305)
..++|.+||.||+++...+..+.+++.|.+||.+|+.++|++||+|||++|+++++.++.+|++|||||+++| ......
T Consensus 46 ~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~ 125 (214)
T PF00566_consen 46 IFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDF 125 (214)
T ss_dssp CHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGG
T ss_pred HHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhccccccc
Confidence 4678999999999977777888999999999999999999999999999999999988889999999999999 445555
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 251 FRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 251 f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
|. +...++...+..+..+++..+|+|++||++.++....+...||+++|+.
T Consensus 126 ~~--~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~ 176 (214)
T PF00566_consen 126 FQ--PNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSR 176 (214)
T ss_dssp TS--TTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTT
T ss_pred cc--ccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCC
Confidence 54 3567899999999999999999999999999999999999999999975
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=3.8e-25 Score=202.74 Aligned_cols=182 Identities=21% Similarity=0.401 Sum_probs=153.0
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCcccCCCCc
Q 021933 52 IGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQP 131 (305)
Q Consensus 52 ~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (305)
.+++...+..||||.++|+..|+.|.|.... .+...-.|++.++++....
T Consensus 159 tdk~~~llkeggiphslr~~lw~rlsga~~k----------kk~ae~sy~~ilk~~andk-------------------- 208 (848)
T KOG2222|consen 159 TDKFEELLKEGGIPHSLRAFLWMRLSGALAK----------KKDAETSYEDILKACANDK-------------------- 208 (848)
T ss_pred hHHHHHHHHcCCCCcchhHHHHHHhhhhhhh----------hccccccHHHHHHHhcccc--------------------
Confidence 3454445566779999999999999997322 1223346888888754210
Q ss_pred CCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccC--cchHHHHHHHHHHHHhh
Q 021933 132 IQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK--QENLSKLWDILAVYAWV 209 (305)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~--~~~~~~L~~IL~~y~~~ 209 (305)
..+-.||++|+.|+.|++..|.. +++.+.|+|||.+.|..
T Consensus 209 --------------------------------------~~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~i 250 (848)
T KOG2222|consen 209 --------------------------------------LMIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFI 250 (848)
T ss_pred --------------------------------------cchhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheee
Confidence 02467899999999999999976 47899999999999999
Q ss_pred CCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhh-cccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCC
Q 021933 210 DRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRG-NFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLW 288 (305)
Q Consensus 210 ~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~-~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~ 288 (305)
.|++||||||.-|+|.+|+.+ .|+.|||++..+++.+.+ +|+. ....|++.+-.+...|+.-+.|.|.+.|+..+|.
T Consensus 251 fpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfys-qtllgiqaderv~~~li~~~l~~ldeal~~~die 328 (848)
T KOG2222|consen 251 FPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFYS-QTLLGIQADERVMHHLIACHLPDLDEALEDHDIE 328 (848)
T ss_pred cCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhhh-hhHhccchhHHHHHHHHHhccCchhHHHHhccce
Confidence 999999999999999999887 888999999999998764 5654 5788999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhh
Q 021933 289 SCSVENFHFVTHYIS 303 (305)
Q Consensus 289 ~~~~~~~~f~~~~~~ 303 (305)
.+.++-.||+|+|-+
T Consensus 329 lslitl~w~ltlf~n 343 (848)
T KOG2222|consen 329 LSLITLHWFLTLFAN 343 (848)
T ss_pred eeehHHHHHHHHHHH
Confidence 999999999999954
No 11
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.92 E-value=3.7e-25 Score=209.93 Aligned_cols=196 Identities=19% Similarity=0.347 Sum_probs=166.8
Q ss_pred HHHHhhcCCCCC-CCH--HHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 021933 38 RKWQAAFTPEGQ-LDI--GKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVV 114 (305)
Q Consensus 38 ~~W~~~~~~~~~-i~~--~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 114 (305)
+.|+++|.++|+ ++. ...++++.+.|||...|++.|.++.|.. .-+..+.+.|.+++....-.
T Consensus 174 k~W~~~f~~~G~~~~~~qt~~~~Klv~~gipe~~rgeiW~l~sGav----------~~~l~~~Geygkll~~~~G~---- 239 (671)
T KOG4347|consen 174 KFWKKYFIKDGPNMNQIQTILLRKLLYNGFPEDPRGEIWYLASGAV----------ASLLLNPGEYGKLLHSVTGK---- 239 (671)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhcCCChHHHHHHhhhHHH----------HHhhcCcHHhhhhhhcccCC----
Confidence 359999988766 443 2347788899999999999999999972 12344567888876652210
Q ss_pred CCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCcc
Q 021933 115 GSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQE 194 (305)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~~ 194 (305)
..-....|++|+.|..|+++-|+.++
T Consensus 240 ------------------------------------------------------~~~a~eEIE~Dl~rsLpEhpA~Q~e~ 265 (671)
T KOG4347|consen 240 ------------------------------------------------------RSVATEEIEPDLGRSLPEHPAFQSEP 265 (671)
T ss_pred ------------------------------------------------------cccccccccCCCCCCCCcchhhhCCC
Confidence 01234569999999999999999999
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHHHHHHh
Q 021933 195 NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRH 274 (305)
Q Consensus 195 ~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~l~~ll~~~ 274 (305)
+...|+|||.|||+.||+|||||-||-+++.+|+.+ .|++|||+++.+.+.+.+.|+.. .+.|...++.+++.|++..
T Consensus 266 gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~ip~yys~-~vvGtliDQ~vfe~lve~~ 343 (671)
T KOG4347|consen 266 GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYIPDYYSK-TVVGTLIDQSVFEELVEDT 343 (671)
T ss_pred chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhcccccch-hhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999777 88899999999999998888864 6789999999999999999
Q ss_pred hHHHHHHHHhCCCCccCCChHHHHHHHhhC
Q 021933 275 WAEVTISLRSECLWSCSVENFHFVTHYISG 304 (305)
Q Consensus 275 dP~L~~hl~~~~i~~~~~~~~~f~~~~~~~ 304 (305)
.|.|++|+.+.+ ....++..||+++|++.
T Consensus 344 lP~l~~~~~~l~-~l~~Vsl~WFlslFls~ 372 (671)
T KOG4347|consen 344 LPVLGEHLAVLG-QLSTVSLSWFLSLFLSL 372 (671)
T ss_pred hhHHHHHhhhhc-ccceEeeHHHHHHHHHH
Confidence 999999999999 88899999999999874
No 12
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.3e-25 Score=183.03 Aligned_cols=215 Identities=18% Similarity=0.309 Sum_probs=161.2
Q ss_pred CcccccCCCcc-cCCCCCCCCCCCCCCCHHHHHhhcCCCCCC-C-HHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCH
Q 021933 10 DSYYEVRPECT-DVPKTRFKIKPGKTLSARKWQAAFTPEGQL-D-IGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTF 86 (305)
Q Consensus 10 ~~~~~~~~~~~-~~p~~~~~~~~~~~l~~~~W~~~~~~~~~i-~-~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~ 86 (305)
|+||||..+.. ..+ .+...+..-.-+.++|..++++.... + .-+.++.-|+.|||+++|++.|++|.|...+.
T Consensus 48 dr~gfi~~~q~a~~~-k~~~~~~~L~~ReskwL~mldnw~~~m~kk~~~ir~rcrkgippslr~Raw~ylsGa~~~~--- 123 (267)
T KOG2221|consen 48 DRFGFIEGEQGAQGK-KEPETRGELRYRESKWLHMLDNWHEEMRKKQKKIRPRCRKGIPPSLRGRAWRYLSGAPSPP--- 123 (267)
T ss_pred cccceeecccccccC-CCcccHHHHHhhHHHHHHHHHHHHHHHHhccccccchhhcCCCcccchhHHHhhcCCCCCC---
Confidence 89999877765 333 22222222233567898888763221 1 11346667899999999999999999975443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHH
Q 021933 87 DEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKV 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (305)
..++..|..+... + | .+.
T Consensus 124 -------~~np~~~~~~~~~-------p--------------G------------------------------~p~---- 141 (267)
T KOG2221|consen 124 -------PKNPVVFDELGPA-------P--------------G------------------------------DPK---- 141 (267)
T ss_pred -------CCCcchhhhccCC-------C--------------C------------------------------CCc----
Confidence 1234445443221 0 1 111
Q ss_pred HHHHHHHHHHhhhhcccCCCchhccC--cchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHH
Q 021933 167 IQWMLTLHQIGLDVIRTDRTLVFYEK--QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLM 244 (305)
Q Consensus 167 ~~~~~~~~~I~kDv~RT~~~~~~f~~--~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm 244 (305)
..+-|.+|+.|-||.+.+|-. ..+++.|+|+|.+|.+++|+.||||+-.-|+|++|..+ .+.||||||+.+.
T Consensus 142 -----t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqic 215 (267)
T KOG2221|consen 142 -----TAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQIC 215 (267)
T ss_pred -----chhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHH
Confidence 245699999999999999965 47799999999999999999999999999999999998 7889999999999
Q ss_pred HHhhhcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHH
Q 021933 245 RRLRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHF 297 (305)
Q Consensus 245 ~~~~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f 297 (305)
+....-|+.. +...|+.+-.+|..|++..+|-.|.||....+....+...||
T Consensus 216 ekylqgy~~s-gleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 216 EKYLQGYYSS-GLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHccccccc-chhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 9877777653 677888999999999999999999999976666655555554
No 13
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=189.03 Aligned_cols=138 Identities=22% Similarity=0.343 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHhhhhcccCCCchhccC--cchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHH
Q 021933 163 DKKVIQWMLTLHQIGLDVIRTDRTLVFYEK--QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240 (305)
Q Consensus 163 ~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~--~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f 240 (305)
.+.+.+..+..+.|..|+.||||++++|+. +.++..|.|+|.+|+..+|++|||||.+++|++||++| +|+.||=++
T Consensus 612 ~~llkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afell 690 (948)
T KOG4436|consen 612 KELLKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELL 690 (948)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHH
Confidence 344567778889999999999999999987 58899999999999999999999999999999999999 999999999
Q ss_pred HHHHHH--hhhcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 241 ERLMRR--LRGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 241 ~~Lm~~--~~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
..||-. ++..|. +++.-++.++..+..++..+.++||.||++..|....++..||+|.|.|
T Consensus 691 k~LM~~r~~r~qy~--pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fas 753 (948)
T KOG4436|consen 691 KFLMFDRGMRKQYR--PDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFAS 753 (948)
T ss_pred HHHHHHHhhHhhhc--hHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHh
Confidence 999974 455666 4677899999999999999999999999999999999999999999976
No 14
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.6e-20 Score=175.80 Aligned_cols=204 Identities=19% Similarity=0.192 Sum_probs=144.2
Q ss_pred CCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCcccCCCCcCCCccccccCCCCC
Q 021933 66 PSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGI 145 (305)
Q Consensus 66 ~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (305)
..+|+.+|+++||+.|.+.+.|.- -+.+.+..|..++..+.. .+....++...+.+ ..++.+
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~ss~id--~~~~~ra~~r~~r~~~L~------------dPh~~k~~~s~d~~----idnPLS 88 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENSSWID--NLRRLRANYRRLRRRLLI------------DPHNLKENHSPDLP----IDNPLS 88 (625)
T ss_pred hhhhhHHHHHhheecCCCchhHHH--HHHHHhhhhhcccccccc------------CccccccccCCCcc----cCCccc
Confidence 458999999999999998777653 345666777776444321 11100100000000 001111
Q ss_pred CCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCc-hhccCcchHHHHHHHHHHHHhhCCCCCCCcChhhHHH
Q 021933 146 SASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTL-VFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCS 224 (305)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~-~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a 224 (305)
+. ..+.|.++.+..+..+.|++||.||||.+ .+|+.+..+.+|++||+.||..||.+||.|||++|.|
T Consensus 89 q~-----------~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLA 157 (625)
T KOG1091|consen 89 QN-----------PQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLA 157 (625)
T ss_pred cC-----------CCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhh
Confidence 11 12358889999999999999999999999 8899999999999999999999999999999999999
Q ss_pred HHHhcccC------------------------------hHHHH--HHHHHHHHHhhhcccC-------------------
Q 021933 225 PMIILLEN------------------------------EADAF--WCFERLMRRLRGNFRC------------------- 253 (305)
Q Consensus 225 ~ll~v~~~------------------------------E~daF--~~f~~Lm~~~~~~f~~------------------- 253 (305)
|+++|... +++++ -.|+.+|-....+|..
T Consensus 158 Pl~fVl~~D~q~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~ 237 (625)
T KOG1091|consen 158 PLLFVLHVDNQALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMF 237 (625)
T ss_pred hhhhheehhHHHHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccch
Confidence 99998731 33444 3566666543222210
Q ss_pred ---CCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 254 ---TESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 254 ---~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
..+.+.+......+..+|...|+.|+.||. ..+++++.|..+|+.
T Consensus 238 d~l~~~l~~v~e~~~~~~~lL~~~D~~Lh~HL~-----~l~i~pqifgiRWlR 285 (625)
T KOG1091|consen 238 DALMPGLPPVFEANFAQYHLLAKVDKSLHSHLV-----ELGIEPQIFGIRWLR 285 (625)
T ss_pred hhhcccchhHHHHhhhhhhhhhhccHHHHHHHH-----hcCCchHHHHHHHHH
Confidence 133445667788888999999999999998 577888889888874
No 15
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.81 E-value=4.8e-20 Score=173.29 Aligned_cols=125 Identities=23% Similarity=0.411 Sum_probs=113.9
Q ss_pred HHHhhhhcccCCCchhccC--cchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhh-hc
Q 021933 174 HQIGLDVIRTDRTLVFYEK--QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR-GN 250 (305)
Q Consensus 174 ~~I~kDv~RT~~~~~~f~~--~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~-~~ 250 (305)
.+| +|+.||+|.+..|.. +..+++|.+||.+|+.+++++||||||..++++++.++ .|++|||.++.+|.... +.
T Consensus 187 ~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~~~~ 264 (397)
T KOG1102|consen 187 EII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYGLDL 264 (397)
T ss_pred HHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccchhc
Confidence 456 999999999999876 46799999999999999999999999999999999998 69999999999998643 34
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHh
Q 021933 251 FRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYI 302 (305)
Q Consensus 251 f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~ 302 (305)
| ..++.|+......+..+++...|.++.|+...++..+.+...||+|.|.
T Consensus 265 ~--~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~ 314 (397)
T KOG1102|consen 265 L--SPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFA 314 (397)
T ss_pred c--cccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeee
Confidence 4 4578899999999999999999999999999999999999999999875
No 16
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.80 E-value=2.4e-19 Score=168.17 Aligned_cols=132 Identities=21% Similarity=0.240 Sum_probs=119.8
Q ss_pred HHHHHhhhhcccCCCchhccCcchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhc-ccChHHHHHHHHHHHHHhhhc
Q 021933 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIIL-LENEADAFWCFERLMRRLRGN 250 (305)
Q Consensus 172 ~~~~I~kDv~RT~~~~~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v-~~~E~daF~~f~~Lm~~~~~~ 250 (305)
..+||+.||+|+.......+.+.++++|+|+|.||+..+|...|.||+..||+||++. +++|+-||-||..++-++..+
T Consensus 390 tdrqievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~ 469 (725)
T KOG1093|consen 390 TDRQIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQH 469 (725)
T ss_pred chhhhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 4678999999999887778889999999999999999999999999999999999875 568999999999999887766
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 251 FRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 251 f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
|+..+...-+...+..|.+++..+||+|++||...|+-+-.++.-||+|.|..
T Consensus 470 fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fsh 522 (725)
T KOG1093|consen 470 FFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSH 522 (725)
T ss_pred HHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 65554556788999999999999999999999999999999999999999964
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.60 E-value=2e-15 Score=134.25 Aligned_cols=128 Identities=17% Similarity=0.123 Sum_probs=104.1
Q ss_pred HHHHhhhhcccCCCch----hccCcchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhh
Q 021933 173 LHQIGLDVIRTDRTLV----FYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR 248 (305)
Q Consensus 173 ~~~I~kDv~RT~~~~~----~f~~~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~ 248 (305)
..|+..||.|++...+ .-.....++.|..++..--..+|.+.|.||.+|||..||+++ .|.+|+-....|.....
T Consensus 97 ~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~l 175 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHL 175 (395)
T ss_pred cceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHH
Confidence 5679999999985443 222235566777766666677899999999999999999999 89999999999887655
Q ss_pred hcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 249 GNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 249 ~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
..|.. +.+.+..+++..+..+++..+|+||+.|++..+. +.++-.|.+|+|-+
T Consensus 176 rdfM~-~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH 228 (395)
T KOG2595|consen 176 RDFML-PTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVG-TLFALSWLLTWFAH 228 (395)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhcChHHHHHHHhhccc-ceehhhHHHHHHhh
Confidence 55664 5788899999999999999999999999986654 66888899999854
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.45 E-value=5.1e-13 Score=129.99 Aligned_cols=183 Identities=17% Similarity=0.208 Sum_probs=147.0
Q ss_pred HHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCcccCCCCcCCC
Q 021933 55 TLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQD 134 (305)
Q Consensus 55 ~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (305)
.++.++.+|+|+..|-.+|+.|+...... +. ...+.|.++......
T Consensus 176 ~l~e~Ve~~~p~~frli~~qlLssatd~~-------q~--~I~e~~sdl~~~s~~------------------------- 221 (948)
T KOG4436|consen 176 KLKELVEGGIPMHFRLIRWQLLSSATDRE-------QA--LIFEDYSDLAPCSSQ------------------------- 221 (948)
T ss_pred hhHHHHhcCCchHHHHHHHHHhcccccch-------hh--HHHHHHHHHhhhcch-------------------------
Confidence 36778899999999999999998752111 11 134556666554210
Q ss_pred ccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCc-c--------hHHHHHHHHHH
Q 021933 135 PLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ-E--------NLSKLWDILAV 205 (305)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~-~--------~~~~L~~IL~~ 205 (305)
.++ ..+.-.|..|+.||+|.+.+|... . .++.|+|+..+
T Consensus 222 ---------------------------~Ek-----~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~ 269 (948)
T KOG4436|consen 222 ---------------------------QEK-----ELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKA 269 (948)
T ss_pred ---------------------------hhh-----hHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHH
Confidence 000 134567999999999999999864 2 48999999999
Q ss_pred HHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHh
Q 021933 206 YAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQRHWA-EVTISLRS 284 (305)
Q Consensus 206 y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~l~~ll~~~dP-~L~~hl~~ 284 (305)
|+....++|||||=+.+++.+++.+ +++.+|..++.+|...+..=..++.+..+-.++..+....+...| +|+.||.+
T Consensus 270 ~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~e 348 (948)
T KOG4436|consen 270 YSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPE 348 (948)
T ss_pred HhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccc
Confidence 9999999999999999999999888 888999999999986554333345666676789999999999999 99999999
Q ss_pred CCCCccCCChHHHHHHHhhC
Q 021933 285 ECLWSCSVENFHFVTHYISG 304 (305)
Q Consensus 285 ~~i~~~~~~~~~f~~~~~~~ 304 (305)
.++....+...||++.|+|+
T Consensus 349 q~~h~S~~~rs~flt~~ltt 368 (948)
T KOG4436|consen 349 QHFHTSMYARSWFLTNFLTT 368 (948)
T ss_pred cCCCccHHHHHHHHHhhccc
Confidence 99999999999999999985
No 19
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.35 E-value=4.6e-14 Score=130.76 Aligned_cols=188 Identities=24% Similarity=0.296 Sum_probs=149.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhcCCCCCCCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q 021933 22 VPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYS 101 (305)
Q Consensus 22 ~p~~~~~~~~~~~l~~~~W~~~~~~~~~i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~ 101 (305)
++ +...+.++..++++.|+++..+ +.+..-..++..+++|+....|+.+|+.+++.+...+...+-+...-...+.|.
T Consensus 519 ~~-pD~pcda~~glt~~~W~qy~~d-~t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~ 596 (813)
T KOG1648|consen 519 LI-PDDPCDASAGLTEKFWKQYRAD-PTIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYD 596 (813)
T ss_pred cC-CCCCCCccccccHHHHHHHhcC-CchHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHH
Confidence 44 5667888899999999999876 566666678888999999999999999999987766544333222223344454
Q ss_pred HHHHHHHhhccccCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhc
Q 021933 102 AWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVI 181 (305)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~ 181 (305)
...-.+. ......|++|+.
T Consensus 597 ~~l~~~~-------------------------------------------------------------~~~~~~~~kd~e 615 (813)
T KOG1648|consen 597 RNLITLF-------------------------------------------------------------RANLHRIDKDVE 615 (813)
T ss_pred HHHHHHH-------------------------------------------------------------hhheeeecchhh
Confidence 4333222 134567999999
Q ss_pred ccCCCchhccCcchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHH
Q 021933 182 RTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVE 261 (305)
Q Consensus 182 RT~~~~~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~ 261 (305)
|+.++..+|+++.+.++ +++.++|...|-+-||+|||+||.+|++..+++|+-+-=||.-+|-.-+..|. ..+|+.
T Consensus 616 ~~~~~~~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~---q~~~~~ 691 (813)
T KOG1648|consen 616 RCDRNLMFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFP---QRPGMS 691 (813)
T ss_pred hCcchheeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCC---CCCCcc
Confidence 99999999999999998 89999999999999999999999999999999998888899999988778886 456788
Q ss_pred HHHHHHHHHHHHhhHH
Q 021933 262 TQLSNLASITQRHWAE 277 (305)
Q Consensus 262 ~~l~~l~~ll~~~dP~ 277 (305)
+++-.+. +++..+|-
T Consensus 692 ~~l~~~r-~~~v~~~l 706 (813)
T KOG1648|consen 692 KCLLNLR-LIQVVDPL 706 (813)
T ss_pred ccccccc-chhhhcch
Confidence 8887776 78888883
No 20
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=97.58 E-value=0.00033 Score=65.49 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCcC--hhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHHHHH
Q 021933 195 NLSKLWDILAVYAWVDRDVGYCQG--MSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQ 272 (305)
Q Consensus 195 ~~~~L~~IL~~y~~~~p~igY~QG--M~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~l~~ll~ 272 (305)
....|..++.-|+. +..+.|... --.|+-||+..-.+-+|.|-||-++++++.+.-....+ .-...|+-||+
T Consensus 91 vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg-----~~Fh~FRLLlq 164 (669)
T KOG3636|consen 91 VVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKG-----QIFHLFRLLLQ 164 (669)
T ss_pred hhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCC-----ccchHHHHHHH
Confidence 34567788888866 345667663 34778888877778899999999999874433222111 24667888999
Q ss_pred HhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 273 RHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 273 ~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
.+||+|..||....|...+++-.||.++|.+
T Consensus 165 YHdPelc~~LdtkkitPd~Y~lnWf~sLFas 195 (669)
T KOG3636|consen 165 YHDPELCNHLDTKKITPDMYTLNWFASLFAS 195 (669)
T ss_pred hcCHHHhhhhhccccCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976
No 21
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=95.81 E-value=0.0027 Score=59.26 Aligned_cols=33 Identities=52% Similarity=1.027 Sum_probs=31.8
Q ss_pred CCCCcChhhHHHHHHhcccChHHHHHHHHHHHH
Q 021933 213 VGYCQGMSDLCSPMIILLENEADAFWCFERLMR 245 (305)
Q Consensus 213 igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~ 245 (305)
||-.|||++++||+|.-+.+|.|+||||++||.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmq 598 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQ 598 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhc
Confidence 789999999999999988899999999999998
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=1.1 Score=40.31 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHH
Q 021933 194 ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLM 244 (305)
Q Consensus 194 ~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm 244 (305)
.+.-..+.||.+.+..-|+|++|..+--++|.+|..--+|+++|---+.++
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacril 159 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRIL 159 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheee
Confidence 445677899999999999999999999999999888779999886655554
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=85.54 E-value=0.41 Score=46.75 Aligned_cols=76 Identities=32% Similarity=0.442 Sum_probs=61.0
Q ss_pred CCHHHHHhhcCCCCCCCHHH-HHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021933 35 LSARKWQAAFTPEGQLDIGK-TLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (305)
Q Consensus 35 l~~~~W~~~~~~~~~i~~~~-~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (305)
++.++|......+++++... ....+.++|+-..+|+++|+.++++++++.+..++...... ...|...+.+|....
T Consensus 148 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~ 224 (488)
T KOG2197|consen 148 LTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTS 224 (488)
T ss_pred chhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheecc
Confidence 89999999998888775332 23377888887799999999999999999998887777665 778888888877543
No 24
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=38.17 E-value=23 Score=19.76 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=11.1
Q ss_pred CCCCcChhhHHHHHH
Q 021933 213 VGYCQGMSDLCSPMI 227 (305)
Q Consensus 213 igY~QGM~~l~a~ll 227 (305)
.||.||+-+.+--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999988765544
No 25
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=33.37 E-value=89 Score=20.68 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 267 LASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 267 l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
|.++--.+.|+--+-|++.||...+....-|+.+|++
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~ 42 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTK 42 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHH
Confidence 4555667889988999999999999999999988875
No 26
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=25.71 E-value=59 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCC-CCCchHHHHHHHh
Q 021933 52 IGKTLSRIHRGGI-HPSIRGEVWEFLL 77 (305)
Q Consensus 52 ~~~~~~~~~~~GI-p~~lR~~vW~~LL 77 (305)
...+.+++...|+ +|-+|.+||.+.-
T Consensus 25 L~~~~k~La~~GLkDPW~RNevwrY~~ 51 (100)
T KOG4631|consen 25 LETIQKKLAAKGLKDPWGRNEVWRYMG 51 (100)
T ss_pred HHHHHHHHHHccccCchhcchhhhccC
Confidence 3456778899998 5789999999864
No 27
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=4.2e+02 Score=22.74 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=44.8
Q ss_pred CCcChhhHHHHHHhcc-----cChHHHHHHHHHHHHHh----hhcccCCCChhhHHHHHHHHHHHHHHhhHHHHH
Q 021933 215 YCQGMSDLCSPMIILL-----ENEADAFWCFERLMRRL----RGNFRCTESSVGVETQLSNLASITQRHWAEVTI 280 (305)
Q Consensus 215 Y~QGM~~l~a~ll~v~-----~~E~daF~~f~~Lm~~~----~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~ 280 (305)
|.+|..|+++=|--.+ ...-+.=+-|..+|+.+ ..+-++..-.+|+++.+.+...++...--++..
T Consensus 113 YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~dl~~ 187 (204)
T COG2178 113 YILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSDLFR 187 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998654332 23445556666777653 333233334569999999999999877766554
No 28
>PRK10878 hypothetical protein; Provisional
Probab=21.93 E-value=87 Score=22.11 Aligned_cols=23 Identities=4% Similarity=-0.091 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHh
Q 021933 262 TQLSNLASITQRHWAEVTISLRS 284 (305)
Q Consensus 262 ~~l~~l~~ll~~~dP~L~~hl~~ 284 (305)
..+..|..||...||+|++.|-.
T Consensus 22 ~e~~~Fe~LL~~~D~dL~~W~~g 44 (72)
T PRK10878 22 DEKRIFIRLLECDDPDLFNWLMN 44 (72)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhC
Confidence 57888999999999999999874
No 29
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=21.56 E-value=40 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHHHhhCCCCCCCc
Q 021933 193 QENLSKLWDILAVYAWVDRDVGYCQ 217 (305)
Q Consensus 193 ~~~~~~L~~IL~~y~~~~p~igY~Q 217 (305)
+=+...|..+.+-|--.-|.||||.
T Consensus 16 ~F~Vt~LED~CfkfNY~~P~VGYCr 40 (109)
T PF04753_consen 16 GFGVTELEDFCFKFNYCQPKVGYCR 40 (109)
T ss_pred cCCcchHHHHHHHhcccCCcceeEE
Confidence 3456788999999988889999995
Done!