Query 021933
Match_columns 305
No_of_seqs 160 out of 1547
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 5.1E-42 1.7E-46 322.6 18.0 209 36-303 7-243 (396)
2 2qfz_A TBC1 domain family memb 100.0 7E-42 2.4E-46 316.7 16.5 210 34-303 23-256 (345)
3 2qq8_A TBC1 domain family memb 100.0 4.5E-40 1.5E-44 303.2 15.8 218 34-303 18-240 (334)
4 3qye_A TBC1 domain family memb 100.0 9.7E-40 3.3E-44 300.8 6.7 199 36-303 29-235 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.3E-38 4.6E-43 290.6 10.7 190 37-303 5-201 (310)
6 4hl4_A TBC1 domain family memb 100.0 1.4E-35 4.9E-40 268.3 8.7 190 36-303 19-214 (292)
7 3qwl_A TBC1 domain family memb 99.9 8.2E-29 2.8E-33 223.1 5.9 178 38-303 27-214 (294)
8 2js3_A Uncharacterized protein 37.6 11 0.00036 26.0 0.9 11 214-224 17-27 (96)
9 1erd_A Pheromone ER-2; NMR {Eu 30.9 6.6 0.00023 22.3 -0.8 14 207-220 11-24 (40)
10 3i5g_C Myosin catalytic light 23.5 73 0.0025 24.3 3.8 19 47-65 99-117 (159)
11 1dxs_A P53-like transcription 21.1 84 0.0029 21.6 3.1 24 56-79 41-64 (80)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=5.1e-42 Score=322.62 Aligned_cols=209 Identities=23% Similarity=0.380 Sum_probs=182.1
Q ss_pred CHHHHHhhcCCCCCCCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 021933 36 SARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG 115 (305)
Q Consensus 36 ~~~~W~~~~~~~~~i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 115 (305)
..++|.+++.+.+.+|..+ ++.++++|||+.+|+.||++|||++|.+.+ +|+..++++++.|..+++++.....
T Consensus 7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~--- 80 (396)
T 1fkm_A 7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQH--- 80 (396)
T ss_dssp HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSC---
T ss_pred HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccC---
Confidence 4579999999865588887 666788999999999999999999998865 4556778899999999988542000
Q ss_pred CCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCcch
Q 021933 116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN 195 (305)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~~~ 195 (305)
. ......++|++||.||+|++++|+.+.+
T Consensus 81 ---------------------------------------------~------~~~~~~~qI~~Dv~RT~p~~~~F~~~~~ 109 (396)
T 1fkm_A 81 ---------------------------------------------S------RDIPTWHQIEIDIPRTNPHIPLYQFKSV 109 (396)
T ss_dssp ---------------------------------------------S------THHHHHHHHHHHGGGSSTTSGGGGSHHH
T ss_pred ---------------------------------------------c------ccHHHHHHHHHHhhhhCCCcccccCchH
Confidence 0 0124678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhccc------------------C----------hHHHHHHHHHHHHHh
Q 021933 196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------N----------EADAFWCFERLMRRL 247 (305)
Q Consensus 196 ~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~------------------~----------E~daF~~f~~Lm~~~ 247 (305)
++.|.|||.+|+.+||++|||||||+||||||+++. + |++|||||++||+.+
T Consensus 110 ~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~ 189 (396)
T 1fkm_A 110 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI 189 (396)
T ss_dssp HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998762 1 999999999999999
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 248 RGNFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 248 ~~~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
+++|.. +++|+...+.+++.||+..||+|++||++.+|....+...||+++|..
T Consensus 190 ~~~f~~--~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~ 243 (396)
T 1fkm_A 190 TDNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMR 243 (396)
T ss_dssp GGGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGG
T ss_pred HHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 888875 568999999999999999999999999999999999999999999874
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=7e-42 Score=316.72 Aligned_cols=210 Identities=20% Similarity=0.335 Sum_probs=178.7
Q ss_pred CCCHHHHHhhcCCCCCCCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021933 34 TLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (305)
Q Consensus 34 ~l~~~~W~~~~~~~~~i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (305)
.-..++|.+++++ ..+|..+ ++.++++|||+.+|+.||++|||++|.+.. ++...++++++.|..+++++......
T Consensus 23 ~~r~~kw~~~l~~-~~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~ 98 (345)
T 2qfz_A 23 ASRLDKFKQLLAG-PNTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRKQKEYFAFIEHYYDSRND 98 (345)
T ss_dssp -CHHHHHHHHHHC-SBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcC-CCCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 3456899999986 3478877 666778999999999999999999988754 45567788899999999886421000
Q ss_pred cCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCc
Q 021933 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ 193 (305)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~ 193 (305)
.......++|++||.||+|+ ++|+.+
T Consensus 99 -----------------------------------------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~ 124 (345)
T 2qfz_A 99 -----------------------------------------------------EVHQDTYRQIHIDIPRMSPE-ALILQP 124 (345)
T ss_dssp -------------------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSH
T ss_pred -----------------------------------------------------cchHHHHHHHHHhCcccCCc-cccCCc
Confidence 00013578999999999999 999999
Q ss_pred chHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhccc------------------------ChHHHHHHHHHHHHHhhh
Q 021933 194 ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------------NEADAFWCFERLMRRLRG 249 (305)
Q Consensus 194 ~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~------------------------~E~daF~~f~~Lm~~~~~ 249 (305)
.+++.|.|||.+||.+||++|||||||+||||||+++. +|++|||||++||+.+++
T Consensus 125 ~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~ 204 (345)
T 2qfz_A 125 KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQD 204 (345)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999998874 399999999999999988
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 250 NFRCTESSVGVETQLSNLASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 250 ~f~~~~~~~gi~~~l~~l~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
+|.. +++|+...+.++..||+..+|+|++||++.++....+...||+++|..
T Consensus 205 ~y~~--~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~ 256 (345)
T 2qfz_A 205 NYTF--AQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMR 256 (345)
T ss_dssp GSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTT
T ss_pred cccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcc
Confidence 8874 578999999999999999999999999999999888999999999874
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=303.17 Aligned_cols=218 Identities=22% Similarity=0.294 Sum_probs=165.4
Q ss_pred CCCHHHHH-hhcCCCCCC-CHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021933 34 TLSARKWQ-AAFTPEGQL-DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (305)
Q Consensus 34 ~l~~~~W~-~~~~~~~~i-~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (305)
.-...+|. .++.+.+.+ +..+ ++.++++|||+++|+.||++|+|+. ...+.+.++...++.++.|..+........
T Consensus 18 ~~~~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~ 95 (334)
T 2qq8_A 18 GNAVLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVE 95 (334)
T ss_dssp SCHHHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCc
Confidence 44668998 577765444 5555 7888999999999999999999975 455666655555555556655433211000
Q ss_pred cccCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhcc
Q 021933 112 PVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYE 191 (305)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~ 191 (305)
.++. + . .........++|++||.||+|++++|+
T Consensus 96 --------------~~d~-~----~----------------------------~~~~~~~~~~~I~~Dv~RT~p~~~~F~ 128 (334)
T 2qq8_A 96 --------------NEDA-G----F----------------------------SAADREASLELIKLDISRTFPNLCIFQ 128 (334)
T ss_dssp ----------------------------------------------------------CCHHHHHHHHHHTSSGGGCSSS
T ss_pred --------------cccc-c----c----------------------------ccccchhHHHHHHHHHhhcCCCchhhc
Confidence 0000 0 0 000011356899999999999999998
Q ss_pred Cc-chHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhh--hcccCCCChhhHHHHHHHHH
Q 021933 192 KQ-ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR--GNFRCTESSVGVETQLSNLA 268 (305)
Q Consensus 192 ~~-~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~--~~f~~~~~~~gi~~~l~~l~ 268 (305)
.+ ++++.|.|||.+||.+||++|||||||+|||+||+++ +|++|||||++||++.. .+|. .+.+++...+..+.
T Consensus 129 ~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 205 (334)
T 2qq8_A 129 QGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFR--VDHGLMLTYFAAFE 205 (334)
T ss_dssp TTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHS--SCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccC--CChHHHHHHHHHHH
Confidence 75 6899999999999999999999999999999999888 89999999999998653 4454 35679999999999
Q ss_pred HHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 269 SITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 269 ~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
.+|+..+|+|++||++.++....+...||+++|..
T Consensus 206 ~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~ 240 (334)
T 2qq8_A 206 VFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSK 240 (334)
T ss_dssp HHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTT
T ss_pred HHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcc
Confidence 99999999999999999999999999999999974
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=9.7e-40 Score=300.75 Aligned_cols=199 Identities=24% Similarity=0.429 Sum_probs=162.2
Q ss_pred CHHHHHhhcCCCCC----CCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021933 36 SARKWQAAFTPEGQ----LDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (305)
Q Consensus 36 ~~~~W~~~~~~~~~----i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (305)
+.++|.+++.+.|+ .+..+ ++.++++|||+++|+.||++|+|+.+...+..+ .....+..|.+++++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 56789999988665 35666 677778999999999999999997432111000 00112344555433210
Q ss_pred cccCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhcc
Q 021933 112 PVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYE 191 (305)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~ 191 (305)
...++|++||.||+|++++|+
T Consensus 102 -----------------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 102 -----------------------------------------------------------SQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp -----------------------------------------------------------TTHHHHHHHHTTSSTTSTTTC
T ss_pred -----------------------------------------------------------CchhHHHHhhcccCCCchhhc
Confidence 124689999999999999998
Q ss_pred Cc--chHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHh--hhcccCCCChhhHHHHHHHH
Q 021933 192 KQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRL--RGNFRCTESSVGVETQLSNL 267 (305)
Q Consensus 192 ~~--~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~--~~~f~~~~~~~gi~~~l~~l 267 (305)
.. .+++.|.|||.+|+.+||++|||||||+|||+||+++ +|++|||||++||+.. ..+|. ++++|+...+..+
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l 199 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYR--PDMIILQIQMYQL 199 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGS--TTCHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCC--CChHHHHHHHHHH
Confidence 75 7899999999999999999999999999999999888 8999999999999874 55665 3678999999999
Q ss_pred HHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 268 ASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 268 ~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
..+|+..+|+|++||++.++....+...||+++|..
T Consensus 200 ~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~ 235 (331)
T 3qye_A 200 SRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFAS 235 (331)
T ss_dssp HHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999975
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=290.60 Aligned_cols=190 Identities=22% Similarity=0.365 Sum_probs=159.4
Q ss_pred HHHHHhhcCCCCCC---CHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021933 37 ARKWQAAFTPEGQL---DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (305)
Q Consensus 37 ~~~W~~~~~~~~~i---~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (305)
.++|.+++.+.+.. +..+ ++.++++|||+.+|+.||+.|+|+.+. ...++.|..++.+..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 46788888764332 3334 777788999999999999999998653 123456776543200
Q ss_pred cCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCc
Q 021933 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ 193 (305)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~ 193 (305)
...++|++||.||+|++++|+..
T Consensus 68 ---------------------------------------------------------~~~~~I~~Dv~Rt~p~~~~f~~~ 90 (310)
T 3hzj_A 68 ---------------------------------------------------------AQESVITRDIHRTFPAHDYFKDT 90 (310)
T ss_dssp ---------------------------------------------------------TTHHHHHHHHTTSSTTSTTTSST
T ss_pred ---------------------------------------------------------CcHHHHHHHHHhhCCCchhhcCC
Confidence 12468999999999999999875
Q ss_pred --chHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHH--hhhcccCCCChhhHHHHHHHHHH
Q 021933 194 --ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSNLAS 269 (305)
Q Consensus 194 --~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~--~~~~f~~~~~~~gi~~~l~~l~~ 269 (305)
.+++.|.|||.+|+.+||++|||||||+|||+||+++ +|++|||||++||+. ++++|. ++++|+...+..+..
T Consensus 91 ~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ 167 (310)
T 3hzj_A 91 GGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYR--NNFEDLHCKFYQLER 167 (310)
T ss_dssp TSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTH--HHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhccccccccc--ccHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999 999999999999986 556665 467899999999999
Q ss_pred HHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 270 ITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 270 ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
+|+..+|+|++||++.++....+...||+++|..
T Consensus 168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~ 201 (310)
T 3hzj_A 168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTA 201 (310)
T ss_dssp HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTT
T ss_pred HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999974
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=1.4e-35 Score=268.33 Aligned_cols=190 Identities=18% Similarity=0.147 Sum_probs=151.3
Q ss_pred CHHHHHhhcCCCCCCCHHHHHHHHHhC-C-CCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021933 36 SARKWQAAFTPEGQLDIGKTLSRIHRG-G-IHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (305)
Q Consensus 36 ~~~~W~~~~~~~~~i~~~~~~~~~~~~-G-Ip~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (305)
..+.+++++.+ +.+|.+++++.+..+ | +|+++|+.||++|+|+.+.+.... |.....
T Consensus 19 k~~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~~-------- 77 (292)
T 4hl4_A 19 KVAEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNLR-------- 77 (292)
T ss_dssp HHHHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTHH--------
T ss_pred HHHHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhhc--------
Confidence 34567777765 668998854444332 3 789999999999999977653211 110000
Q ss_pred cCCCccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccC-
Q 021933 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK- 192 (305)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~- 192 (305)
......+||++||.||+|.++.|..
T Consensus 78 ------------------------------------------------------~~~~~~~qI~~Dv~RT~~~~~~~~~~ 103 (292)
T 4hl4_A 78 ------------------------------------------------------QMSKDYQQVLLDVRRSLRRFPPGMPE 103 (292)
T ss_dssp ------------------------------------------------------HHCTTHHHHHHHHHTTGGGSCTTSCH
T ss_pred ------------------------------------------------------ccchhHHHHHHhhhhhhhhccCCCCH
Confidence 0013467899999999999988754
Q ss_pred ---cchHHHHHHHHHHHHhhCCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHH
Q 021933 193 ---QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLAS 269 (305)
Q Consensus 193 ---~~~~~~L~~IL~~y~~~~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~l~~ 269 (305)
+..++.|.|||.+|+.+||++|||||||+|||+||+++ +|++|||||++||+...+.|+. +++.|+...+.++..
T Consensus 104 ~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~~-~~~~~~~~~~~~l~~ 181 (292)
T 4hl4_A 104 EQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFMD-PTMDNTKHILNYLMP 181 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGGC-SSSCTTTGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999888 8999999999999975555553 467789999999999
Q ss_pred HHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 270 ITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 270 ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
+|+..+|+|++||++.++ ...+...||+|+|..
T Consensus 182 ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~ 214 (292)
T 4hl4_A 182 IIDQVNPELHDFMQSAEV-GTIFALSWLITWFGH 214 (292)
T ss_dssp HHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTT
T ss_pred HHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhh
Confidence 999999999999999999 568999999999964
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.95 E-value=8.2e-29 Score=223.10 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=134.6
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHhCCCCCCchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 021933 38 RKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSG 117 (305)
Q Consensus 38 ~~W~~~~~~~~~i~~~~~~~~~~~~GIp~~lR~~vW~~LLg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~ 117 (305)
+..+.++.+ ..+|.+++++.+.+||||+.+|+.||++|||++|.+++. |+.++++++++|++++++..
T Consensus 27 ~~~~~ll~~-~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~--------- 94 (294)
T 3qwl_A 27 KSLEILLKD-DRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALK--------- 94 (294)
T ss_dssp HHHHHHTTS-SBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhcC-CCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhh---------
Confidence 456667665 778999955554444499999999999999999998655 66889999999999988732
Q ss_pred ccccCCcccCCCCcCCCccccccCCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcccCCCchhccCcchHH
Q 021933 118 KFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLS 197 (305)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~kDv~RT~~~~~~f~~~~~~~ 197 (305)
..++|..+. |-+..
T Consensus 95 ------------------------------------------------------~~r~I~~~t----P~~~v-------- 108 (294)
T 3qwl_A 95 ------------------------------------------------------VVRFVSDAT----PQAEV-------- 108 (294)
T ss_dssp ------------------------------------------------------HTTSCCTTS----CHHHH--------
T ss_pred ------------------------------------------------------hhhhhhccC----chHHH--------
Confidence 123333322 21111
Q ss_pred HHHHHHHHHHhh----------CCCCCCCcChhhHHHHHHhcccChHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHH
Q 021933 198 KLWDILAVYAWV----------DRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNL 267 (305)
Q Consensus 198 ~L~~IL~~y~~~----------~p~igY~QGM~~l~a~ll~v~~~E~daF~~f~~Lm~~~~~~f~~~~~~~gi~~~l~~l 267 (305)
.|..|... +++. ++|||++||++++.++.+|+||||||++||++++++|.. +++|++..+
T Consensus 109 ----fl~~~~~~~~~l~~~~~~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~--~~~gl~~~l--- 178 (294)
T 3qwl_A 109 ----YLRMYQLESGKLPRSPSFPLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD--SLPQLPKAF--- 178 (294)
T ss_dssp ----HHHHHHHHHTCCCSSTTSCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTT--TGGGHHHHH---
T ss_pred ----HHHHHHcccccccccccCCccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCC--ChhHHHHHH---
Confidence 11122211 2332 459999999999999999999999999999999888875 578997654
Q ss_pred HHHHHHhhHHHHHHHHhCCCCccCCChHHHHHHHhh
Q 021933 268 ASITQRHWAEVTISLRSECLWSCSVENFHFVTHYIS 303 (305)
Q Consensus 268 ~~ll~~~dP~L~~hl~~~~i~~~~~~~~~f~~~~~~ 303 (305)
+.||+..||+|++||++.++....+...||+++|..
T Consensus 179 ~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~ 214 (294)
T 3qwl_A 179 EQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAG 214 (294)
T ss_dssp HHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhcc
Confidence 889999999999999999997655555999999864
No 8
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=37.60 E-value=11 Score=26.04 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=9.1
Q ss_pred CCCcChhhHHH
Q 021933 214 GYCQGMSDLCS 224 (305)
Q Consensus 214 gY~QGM~~l~a 224 (305)
-|.|||.++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 49999998765
No 9
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=30.92 E-value=6.6 Score=22.33 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=9.8
Q ss_pred HhhCCCCCCCcChh
Q 021933 207 AWVDRDVGYCQGMS 220 (305)
Q Consensus 207 ~~~~p~igY~QGM~ 220 (305)
+..+.-.|||||--
T Consensus 11 scehtmcgycqgpl 24 (40)
T 1erd_A 11 SCEHTMCGYCQGPL 24 (40)
T ss_dssp HTCGGGGGGSCHHH
T ss_pred hccccccccccCCe
Confidence 44566689999943
No 10
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=23.53 E-value=73 Score=24.32 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=9.9
Q ss_pred CCCCCHHHHHHHHHhCCCC
Q 021933 47 EGQLDIGKTLSRIHRGGIH 65 (305)
Q Consensus 47 ~~~i~~~~~~~~~~~~GIp 65 (305)
+|.|+..++.+.+..-|.+
T Consensus 99 ~G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 99 QGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp SSEECHHHHHHHHHHSSSC
T ss_pred CCcCcHHHHHHHHHHhCCC
Confidence 4556666554444445543
No 11
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=21.10 E-value=84 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHhCCCCCCchHHHHHHHhCC
Q 021933 56 LSRIHRGGIHPSIRGEVWEFLLGC 79 (305)
Q Consensus 56 ~~~~~~~GIp~~lR~~vW~~LLg~ 79 (305)
+..+..-.||.+.|..+|+-++..
T Consensus 41 ledL~~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 41 IEDLGALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHhhHHHh
Confidence 455667789999999999998875
Done!