BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021935
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OH8|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate Sugar
Epimerase From Corynebacterium Glutamicum. Northeast
Structural Genomics Consortium Target Cgr91
Length = 516
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 19/304 (6%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAEEPQW 60
+TV++TG+ G +GR L +LQ H+V L R K PGK RF+ + A
Sbjct: 148 LTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK-----PGK--RFWDPLNPAS---- 196
Query: 61 RDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLVSA 120
D + G+ +V+LAG PI R++ K+ I+ESR+ T + +L+ ES + + +SA
Sbjct: 197 -DLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAES---TQCTTXISA 252
Query: 121 TALGYYGTSE-TEVFDESSPSGNDYLAEVCREWE-GTALKVNKDVRLALIRIGIVLGKDG 178
+A+G+YG E+ E S SG+D+LAEVCR+WE TA + R+A IR G+ L G
Sbjct: 253 SAVGFYGHDRGDEILTEESESGDDFLAEVCRDWEHATAPASDAGKRVAFIRTGVALSGRG 312
Query: 179 GALAKMIPLFMMFAGGPLGSGQQWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNPVRL 238
G L + LF GG G G WFSWI +DD+ ++ Y A+ + G IN APNPV
Sbjct: 313 GXLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQISGPINAVAPNPVSN 372
Query: 239 AEMCDHLGNVLGRPSWLPVPEFALKAVLG-EGA-FVVLEGQRVVPARAKELGFPFKYRYV 296
A+ L RP+++ +P K +LG +GA + L QR PA + L F+Y +
Sbjct: 373 ADXTKILATSXHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRYTDI 432
Query: 297 KDAL 300
A+
Sbjct: 433 GAAI 436
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 158/306 (51%), Gaps = 22/306 (7%)
Query: 3 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAEEPQWRD 62
V V G TGFIG L Q L A H+V +++R PG PG + +E
Sbjct: 3 VLVGGGTGFIGTALTQLLNARGHEVTLVSRK--------PG------PGRITWDELA-AS 47
Query: 63 CIQGSTAVVNLAGTPIGT---RWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLVS 119
+ A VNLAG I RW+ +KE+ SR+ T + I ++P+ + VLV
Sbjct: 48 GLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV- 106
Query: 120 ATALGYYGTSETEVFDESSPSGN-DYLAEVCREWEGTALKVNKDVRLALIRIGIVLGKDG 178
T + YY S T +DE SP G+ D+ + + +WE A R ++R G+VLG+ G
Sbjct: 107 -TGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGG 165
Query: 179 GALAKMIPLFMMFAGGPLGSGQQWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNPVRL 238
GA + F + GGP+GSG Q+F WIH+ D+ ++ AL GV+NG AP+
Sbjct: 166 GAXGHXLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATN 225
Query: 239 AEMCDHLGNVLGRPSWLPVPEFALKAVLG-EGAFVVLEGQRVVPARAKELGFPFKYRYVK 297
AE G LGR +++P+P ++AV G + A +LEGQ+V+P R G+ + + +
Sbjct: 226 AEFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIXLLEGQKVIPRRTLATGYQYSFPELG 285
Query: 298 DALKAI 303
ALK I
Sbjct: 286 AALKEI 291
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 128/314 (40%), Gaps = 36/314 (11%)
Query: 2 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRS-----RSKAELIFPGKKTRF-FPGVMIA 55
TV VTGA+GFIG LV RL + VR R + K L P +T +A
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLA 66
Query: 56 EEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPS 115
+E + + I+G T V ++A TP+ S + + E+ + I ++ + + VR
Sbjct: 67 DEGSFDEAIKGCTGVFHVA-TPMDFE-SKDPENEVIKPTIEGMLGIMKSC-AAAKTVRRL 123
Query: 116 VLVSATALGYYGTSETEVFDESSPSGNDYL-AEVCREW---------EGTALKVNKDVRL 165
V S+ + V+DES S ++ A+ W E A K K+ +
Sbjct: 124 VFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNI 183
Query: 166 ALIRIGIVLGKDGGALAKMIPLFMMFAGGPLGSGQQWFS------WIHLDDIVNLIYEAL 219
I I L G + +P ++ A P+ + +S ++HLDD+ N
Sbjct: 184 DFITIIPTLVV-GPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLF 242
Query: 220 SNPSYRGVINGTAPNPVRLAEMCDHLGNVLGRPSWLPVPEFALKAVLGEGAFVVLEGQRV 279
NP G ++ + + L L +L R + PE+ + +G L+
Sbjct: 243 ENPKAEGRYICSSHDCIIL-----DLAKML-REKY---PEYNIPTEF-KGVDENLKSVCF 292
Query: 280 VPARAKELGFPFKY 293
+ +LGF FKY
Sbjct: 293 SSKKLTDLGFEFKY 306
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 109/262 (41%), Gaps = 34/262 (12%)
Query: 3 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAEEPQWRD 62
+ VTG GFIG +V +L N V + S E F + R + A++ +D
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEE--FVNEAARLVKADLAADD--IKD 59
Query: 63 CIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLVSATA 122
++G+ V ++A P R +E EI + + T ++++ + ++ GV V S +
Sbjct: 60 YLKGAEEVWHIAANP-DVRIGAENPDEIYRNNVLATYRLLEAMRKA--GVSRIVFTSTST 116
Query: 123 LGYYGTSETEVFDESSPSGNDYLAEVCREWEGTALKVNK---------DVRLALIRIGIV 173
+ YG ++ P+ DY + + L D++ + R V
Sbjct: 117 V--YGEAKV------IPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANV 168
Query: 174 LGKDGGALAKMIPLFMMFAGGP-----LGSGQQWFSWIHLDDIVNLIYEALSNPSYRGVI 228
+G+ + M P LG+G+Q S+I++ D V+ + L +
Sbjct: 169 IGRRS-THGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIF 227
Query: 229 NGTAPNPV---RLAEM-CDHLG 246
N + + + R+AE+ C+ LG
Sbjct: 228 NIGSEDQIKVKRIAEIVCEELG 249
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTRS 33
+ ++VTG TGF+G+ +V+ ++ D + +LTRS
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS 35
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
Length = 342
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 3 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKA-------ELIFPGKKTRFFPGVM-- 53
V VTGA GF+ +V++L ++VR RS SK + +PG RF V+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPG---RFETAVVED 70
Query: 54 IAEEPQWRDCIQGSTAVVNLA 74
+ ++ + + I+G+ V ++A
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIA 91
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 2 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSR 34
TV +TG G IGRRL +RL A+ + VLT R
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVLTSRR 293
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTR-SRSKAELIFPGKKTRFFPGVMIAEEPQ 59
M + VTG GFIG LV +L ++V V+ S + E + P + V ++
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELH----VRDLKDYS 56
Query: 60 WRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLIN----ESPEGVRPS 115
W I+G V + A P E++ E + VV N GVR
Sbjct: 57 WGAGIKGDV-VFHFAANP-------EVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTV 108
Query: 116 VLVSATALGYYGTSETEVFDESSP 139
V S++ + YG ++ E P
Sbjct: 109 VFASSSTV--YGDADVIPTPEEEP 130
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 3 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKA-------ELIFPGKKTRFFPGVM-- 53
V VTGA GF+ +V++L ++VR RS SK + +PG RF V+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPG---RFETAVVED 70
Query: 54 IAEEPQWRDCIQGSTAVVNLA 74
++ + + I+G+ V ++A
Sbjct: 71 XLKQGAYDEVIKGAAGVAHIA 91
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 54/243 (22%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQ---------VRVLTRSRSKAEL--IFPGKKTRFF 49
M + VTG GFIG V++L A + + LT + ++A L + + RF
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 50 PGVMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEI------KESRIRVTSKVVD 103
G + R+ ++G A+V+ A S + + I E+ ++ T ++
Sbjct: 61 HGDIRDAGLLARE-LRGVDAIVHFAA-------ESHVDRSIAGASVFTETNVQGTQTLLQ 112
Query: 104 LINESPEGVRPSVLVSATALGYYGTSETEVFDESSP-----------SGNDYLAEVCREW 152
++ GV V VS + YG+ ++ + ESSP +G+D +A
Sbjct: 113 CAVDA--GVGRVVHVSTNQV--YGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT 168
Query: 153 EGTALKVNKDVRLALIRIGIVLGKDGGALAKMIPLFM--MFAGGPL---GSGQQWFSWIH 207
G +++ + G + K+IPLF+ + GG L G G W+H
Sbjct: 169 YGLDVRITR----CCNNYGPYQHPE-----KLIPLFVTNLLDGGTLPLYGDGANVREWVH 219
Query: 208 LDD 210
DD
Sbjct: 220 TDD 222
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 5 VTGATGFIGRRLVQRLQADNHQVRVLTRSRSK 36
+TGATGF+G L++ LQ +H++ R+ ++
Sbjct: 155 LTGATGFLGAYLIEALQGYSHRIYCFIRADNE 186
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 5 VTGATGFIGRRLVQRLQADNHQVRVLTRSRSK 36
+TGATGF+G L++ LQ +H++ R+ ++
Sbjct: 74 LTGATGFLGAYLIEALQGYSHRIYCFIRADNE 105
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 1 MTVSVTGATGFIGRRLVQRLQA-DNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAEEPQ 59
M + +TGA GF+G+ L L + +H + + R + EL K F
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADF----------- 49
Query: 60 WRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLVS 119
+V+LAG E KE + V+D++ + + +P++L+S
Sbjct: 50 ----------IVHLAGVN-----RPEHDKEFSLGNVSYLDHVLDILTRNTK--KPAILLS 92
Query: 120 ATALGYYGTSETEVFDESSPSGNDYLAEVCREWEGTA 156
++ ++ + ES G L E E+ T
Sbjct: 93 SSIQA----TQDNPYGESKLQGEQLLREYAEEYGNTV 125
>pdb|3IUS|A Chain A, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
pdb|3IUS|B Chain B, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
Length = 286
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 201 QWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMCDHLGNVLGRPSWLPVPEF 260
Q FS IH++DI ++ + + P V N PV ++ + + G P P +F
Sbjct: 178 QVFSRIHVEDIAQVLAASXARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLP-LPPAVDF 236
Query: 261 ALKAVLGEGAFVVLEGQRVVPARAK-ELGFPFKYRYVKDALKAIMS 305
+ E +RV R K ELG KY + L+A+ +
Sbjct: 237 DKADLTPXARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQA 282
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 193 GGPLGS--GQQWFSWI-----HLDDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMC 242
G LG G QW SW H+D I NL+ +NP R +I +A NP + EM
Sbjct: 183 NGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLHTNPQSRRLI-VSAWNPALVDEMA 238
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 3 VSVTGATGFIGRRLVQRLQADNHQVRVL 30
+ +TG GF+G L +L D H+V V+
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVV 57
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 3 VSVTGATGFIGRRLVQRLQADNHQVRVL 30
+ +TG GF+G L +L D H+V V+
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVV 35
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site
Length = 379
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQV 27
+ +S+TGA GFI + +RL+ + H V
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site
Length = 379
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQV 27
+ +S+TGA GFI + +RL+ + H V
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQV 27
+ +S+TGA GFI + +RL+ + H V
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQV 27
+ +S+TGA GFI + +RL+ + H V
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 2 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSR-----SKAELIFPGKKTRFFPGVMIAE 56
T+ +TG TG G+ V+++ + +++ SR S+ + F + RFF G + +
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGD-VRD 81
Query: 57 EPQWRDCIQGSTAVVNLAG---TPIGTRWSSEIKKEIKESRIRVTSKVVD--LINESPEG 111
+ ++G ++ A PI E K + I S V++ L N +
Sbjct: 82 LERLNYALEGVDICIHAAALKHVPIAEYNPLECIK----TNIMGASNVINACLKNAISQV 137
Query: 112 VRPSVLVSATALGYYGTSETEVFDESSPSGNDYLAEVCREWEGTALKVNKDVRLALIRIG 171
+ S +A + YG ++ +D L ++G++ + +++R G
Sbjct: 138 IALSTDKAANPINLYGATKL---------CSDKLFVSANNFKGSS-----QTQFSVVRYG 183
Query: 172 IVLGKDGGALAKMIPLFMMFAGG-----PLGSGQQWFSWIHLDDIVNLIYEAL 219
V+G G ++P F P+ + WI LD+ V+ + ++L
Sbjct: 184 NVVGSRGS----VVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSL 232
>pdb|1XMA|A Chain A, Structure Of A Transcriptional Regulator From Clostridium
Thermocellum Cth-833
pdb|1XMA|B Chain B, Structure Of A Transcriptional Regulator From Clostridium
Thermocellum Cth-833
Length = 145
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 25/115 (21%)
Query: 62 DCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLVSAT 121
D I+G + L+ G + EI K I RI+ V ++ + L SA
Sbjct: 36 DVIRGYVDTIILSLLIEGDSYGYEISKNI---RIKTDELYV---------IKETTLYSAF 83
Query: 122 AL--------GYYGTSETE----VFDESSPSGNDYLAEVCREWEGTALKVNKDVR 164
A YYG ET+ + +P G Y + C EWE T +NK V+
Sbjct: 84 ARLEKNGYIKSYYG-EETQGKRRTYYRITPEGIKYYKQKCEEWELTKKVINKFVK 137
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 2 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 41
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 37 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 76
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 2 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 41
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 17 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 56
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 2 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 41
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 17 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 56
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 28/162 (17%)
Query: 3 VSVTGATGFIGRRLVQRLQADNHQVRVLTRS--RSKAELIF----PG--KKTRFFPGVMI 54
V VTG TGF+G +++ L + + V R+ K ++ F PG +K FF +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFF-NADL 62
Query: 55 AEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVD--------LIN 106
+ + I+G + + A S I + E VT + VD +N
Sbjct: 63 SNPDSFAAAIEGCVGIFHTA---------SPIDFAVSEPEEIVTKRTVDGALGILKACVN 113
Query: 107 ESPEGVRPSVLVSATALGYYGTSETEVFDESSPSGNDYLAEV 148
+ V+ + S+ + + + +V DES S D L V
Sbjct: 114 S--KTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSV 153
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde
Dehydrogenase From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADN---HQVRVLTRSRSKA-ELIFPGKKTRFFP 50
M V+V GATG +GR +++ L+A N ++R+ RS L F G++ P
Sbjct: 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEP 54
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 2 TVSVTGATGFIGRRLV----QRLQADNHQVRVLTRSRSKAE 38
TV +TGATGF+GR LV +RL D + L R+ S +
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLI-CLVRAESDED 114
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 2 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKK 45
T+ +TG GF+G L Q ++ + +V+ + ++ +F +
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNR 55
>pdb|3ANU|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney
pdb|3ANV|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney (2,3-Dap Complex)
pdb|3AWN|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney (Edta Treated)
pdb|3AWO|A Chain A, Crystal Structure Of D-Serine Dehydratase In Complex With
D-Serine From Chicken Kidney (Edta-Treated)
Length = 376
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 195 PLGSGQQWFSWIHLDDIVNLIYEALSNPS---YRGVINGTAPNPVRLAEMCDHLGNVLG 250
PLG G++W W+ LD ++P+ I AP V L + H GN G
Sbjct: 124 PLGHGKRWLVWLKLDCGNGRAGVRPTDPAALELAQAIANDAPEEVTLVGVYAHCGNTYG 182
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1 MTVSVTGATGFIGRRLVQRLQADNHQVRVL 30
M V VTG GFIG +V+ L A +V VL
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVL 30
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 33/156 (21%)
Query: 2 TVSVTGATGFIGRRLVQRLQA-DNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAEEPQW 60
+ +TGA GF+G+ L L + +H + + R + EL K F
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADF------------ 49
Query: 61 RDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLVSA 120
+V+LAG E KE + V+D++ + + +P++L+S+
Sbjct: 50 ---------IVHLAGVN-----RPEHDKEFSLGNVSYLDHVLDILTRNTK--KPAILLSS 93
Query: 121 TALGYYGTSETEVFDESSPSGNDYLAEVCREWEGTA 156
+ ++ + ES G L E E+ T
Sbjct: 94 SIQA----TQDNPYGESKLQGEQLLREYAEEYGNTV 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,402,779
Number of Sequences: 62578
Number of extensions: 410567
Number of successful extensions: 1160
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 41
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)