BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021937
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 334 bits (857), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 162/264 (61%), Positives = 204/264 (77%), Gaps = 4/264 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
++ +M+LELNASDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ A
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNA 136
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D+
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDI 196
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQ 256
Query: 281 SFADSFKRIQNLSFIIRLVLFVLL 304
F ++K I L + L L +L
Sbjct: 257 DFTTAYKNIMELKTLKGLALHDIL 280
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 331 bits (848), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 160/268 (59%), Positives = 205/268 (76%), Gaps = 4/268 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQ 76
Query: 98 LYG-AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
LY ++ +M+LELNASDDRGID++R I FAST++ K KLV+LDEADAMT+D
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQD 133
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
+D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 277 LLNESFADSFKRIQNLSFIIRLVLFVLL 304
+LN+ F +++ I L + L L +L
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDIL 281
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 315 bits (808), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 157/254 (61%), Positives = 186/254 (73%), Gaps = 5/254 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L D+ AH DI TI +L N LPHLL YGPPGTGKTSTI A+ARKLYG
Sbjct: 25 PWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD 84
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y M+LELNASDDRGIDVVR+QI+ FAS+ F F KL++LDEAD+MT AQ AL
Sbjct: 85 NYSRMVLELNASDDRGIDVVREQIKTFASSM-FFFNTTVPYKLIILDEADSMTNIAQTAL 143
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTE-RLKHVIEAEGLDV 220
RRVIEKYTK TRF ++CN V KIIPALQSRCTRFRF+PL P TE RLK +IE E + V
Sbjct: 144 RRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPL-PTPPTEIRLKEIIEKENVKV 202
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLL 278
+ A++ L GDMRK LNILQS M+S ITEEA+Y CTG P+P DIE + WLL
Sbjct: 203 DSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLL 262
Query: 279 NESFADSFKRIQNL 292
N + ++F+ I +L
Sbjct: 263 NSDYEEAFQNISDL 276
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 303 bits (777), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 139/251 (55%), Positives = 182/251 (72%), Gaps = 3/251 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L DV +H+DI+ T+++ S NR+PH+L YGPPGTGKTSTILA ARK+YG
Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP 83
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y N ++ELNASDDRGID VR+QI++FAST+ ++ K+++LDEADAMT AQ AL
Sbjct: 84 NYRNQLMELNASDDRGIDAVREQIKNFASTRQI---FASTFKMIILDEADAMTLAAQNAL 140
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RRVIEKYTKN RF +ICN +NKI PA+QSRCTRFRF PL P + + + HVI++E ++
Sbjct: 141 RRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNID 200
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
A++RL GDMRKALNILQ+ H A I A+Y C G+P P DI+ ++N+
Sbjct: 201 PDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDE 260
Query: 282 FADSFKRIQNL 292
F +F I ++
Sbjct: 261 FVIAFNTISSI 271
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 281 bits (718), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 183/258 (70%), Gaps = 11/258 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP +L +VA H ++ TI + E +LPHLL +GPPGTGKT+TI+AVAR++YG
Sbjct: 18 PWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGK 77
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NMILELNASD+RGIDVVR QI+ FAST Q FS G KLV+LDEADAMT AQ A
Sbjct: 78 NYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----FKLVILDEADAMTNAAQNA 133
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR+IEKY+ +TRF ++ N +K+ PAL SRCTRFRF+PL+ + RL HVIE E +D+
Sbjct: 134 LRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDL 193
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHM---ASQQITEEAVYLCTGNPLPKDIEQISYWL 277
+ +L+ L +GDMR+ALN+LQ+ + A +QI+EE VY C G+P P DI + +
Sbjct: 194 SPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAV 253
Query: 278 LNESFADSFKRIQNLSFI 295
L+ S+ + + S+I
Sbjct: 254 LDGSWESA---LHTFSYI 268
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 173/260 (66%), Gaps = 7/260 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG- 100
PWVEKYRP L ++ AH IV T+ + LPHLL YGPPGTGKT+T+LA AR++Y
Sbjct: 30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSP 89
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFAST---QSFSFGVKASV---KLVLLDEADAMT 154
+ +M+LELNASD+RGIDVVR I +FA T Q+FS KLV+LDEADAMT
Sbjct: 90 TKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMT 149
Query: 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE 214
KDAQ ALRRVIEKYT N RF +ICN + I+PA+QSRCTRFRFAPL+ + RL++++E
Sbjct: 150 KDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVE 209
Query: 215 AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQIS 274
E L +T G AL+ + GDMR +N LQST M+ ++E VY C G P PK+++++
Sbjct: 210 TEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVV 269
Query: 275 YWLLNESFADSFKRIQNLSF 294
LLN+ IQ F
Sbjct: 270 KTLLNDPSKKCMNTIQTKLF 289
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 171/248 (68%), Gaps = 10/248 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y NM+LELNASDDRGIDVVR QI+DFAST Q FS G KL++LDEADAMT AQ A
Sbjct: 74 NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----FKLIILDEADAMTNAAQNA 129
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISY 275
+ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ +
Sbjct: 190 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLK 249
Query: 276 WLLNESFA 283
+L + +
Sbjct: 250 SILEDDWG 257
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 163/251 (64%), Gaps = 3/251 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ+L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRIQNL 292
F +S +++ NL
Sbjct: 241 FVESREQLYNL 251
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 165/251 (65%), Gaps = 3/251 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L++
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +ITEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRIQNL 292
F ++ +++ NL
Sbjct: 241 FVEAREQLYNL 251
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 163/251 (64%), Gaps = 3/251 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I+++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGK 240
Query: 282 FADSFKRIQNL 292
F ++ +++ NL
Sbjct: 241 FVEAKEQLYNL 251
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 234 bits (597), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 162/251 (64%), Gaps = 3/251 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 282 FADSFKRIQNL 292
F ++ +++ NL
Sbjct: 241 FVEAREQLYNL 251
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 159/250 (63%), Gaps = 4/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A++LYG
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDVVR +I+DFA + SFG + +++ LDEADA+T DAQ ALR
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARS---SFGGH-NYRVIFLDEADALTDDAQSALR 127
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRFA L V L+ + E EGL+ T+
Sbjct: 128 RTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTD 187
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L F
Sbjct: 188 DGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDF 247
Query: 283 ADSFKRIQNL 292
A + + +L
Sbjct: 248 AAARATLDDL 257
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 159/250 (63%), Gaps = 4/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A++LYG
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDVVR +I+DFA + SFG + +++ LDEADA+T DAQ ALR
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARS---SFGGH-NYRVIFLDEADALTDDAQSALR 127
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN +KII +QSRC FRFA L V L+ + E EGL+ T+
Sbjct: 128 RTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTD 187
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L F
Sbjct: 188 DGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDF 247
Query: 283 ADSFKRIQNL 292
A + + +L
Sbjct: 248 AAARATLDDL 257
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 227 bits (579), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 168/258 (65%), Gaps = 11/258 (4%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWV KYRP+++ DV+ D++ + + + LPHLL YGPPGTGKTSTILA+A +YG
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 102 Q-YHNMILELNASDDRGIDVVRQQIQDFAS-----TQSFSFGVKASVKLVLLDEADAMTK 155
+ +LELNASD+RGI+VVR +I++FA T + + A+ KL++LDEAD+MT
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTT 130
Query: 156 DAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA 215
DAQ ALRR IE +K TRF L+CN +++II L SRC +FRF PL+ V ERLK + +
Sbjct: 131 DAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQ 190
Query: 216 EGLDVTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLPKDIEQIS 274
EG+ E A+ + NGDMRKA+ LQS + +I+E+ +Y G+ P+ I+Q
Sbjct: 191 EGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQ-- 248
Query: 275 YWLLNESFADSFKRIQNL 292
L++ +SF R+Q++
Sbjct: 249 --LVDCCKKNSFDRLQSM 264
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 227 bits (579), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 152/250 (60%), Gaps = 3/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ L DV H+ I + LPHLL GPPG GKT+ +A+AR+LYG
Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGET 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+H+ +ELNASD+RGIDVVR I++FA T +A K++ LDEADA+T DAQ ALR
Sbjct: 67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLG---EAKFKIIFLDEADALTSDAQSALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+Y RF + CN +KII +QSRC +RF PL +T + + + EGL + +
Sbjct: 124 RTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEK 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ AL+ + GDMR+A+N LQS ++ IT + +Y T PK+IE + LN F
Sbjct: 184 DGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQF 243
Query: 283 ADSFKRIQNL 292
DS ++ L
Sbjct: 244 MDSRNKLDEL 253
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 160/251 (63%), Gaps = 3/251 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP++L +V H++I+ + + +PHLL G PG GKT+ L +A+ LYG
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ LELN+SD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ AL
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNAL 120
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + + LK + E E ++V
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVE 180
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ G+ A++ + GDMRKA+N+LQ+ S+ I E +Y P +I++++ LN
Sbjct: 181 KSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGK 240
Query: 282 FADSFKRIQNL 292
F ++ +++ L
Sbjct: 241 FVEAREQLYKL 251
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 225 bits (573), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALR 131
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ N RF L CN ++II +QSRC FRF+PL V E ++ + E +++TE
Sbjct: 132 RTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTE 191
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F
Sbjct: 192 DGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDF 251
Query: 283 ADS 285
S
Sbjct: 252 TAS 254
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 161/250 (64%), Gaps = 4/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRPQ+L D+ H I + + + ++N LPHLL GP G GKT+ A+A+++YG
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD RGIDVVR +I+ FA SFG +++ LDEADA+T DAQ ALR
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARA---SFG-GYDHRIIFLDEADALTSDAQSALR 129
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E+++ NTRF L CN ++II +QSRC FRF+PL V E+++ + + EG+++T+
Sbjct: 130 RTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTD 189
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ ALV +GDMRKA+N LQ+ + + EEAVY T P++I ++ ++ F
Sbjct: 190 DGVDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDF 249
Query: 283 ADSFKRIQNL 292
+ +++ L
Sbjct: 250 TAARSQLETL 259
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 158/250 (63%), Gaps = 4/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL D+ +DIV+ + R + +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDN 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T + G K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRQYFLELNASDERGIDVIRNKVKEFARTVA---GGNVPFKVVLLDEADNMTADAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL ++ + E ++ +
Sbjct: 126 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQ 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRKA+NILQ++ + ++T EAVY G PK+I ++ L +F
Sbjct: 186 KALETIYDITQGDMRKAINILQASSVYG-KVTVEAVYKVLGLAQPKEIREMIMLALQGNF 244
Query: 283 ADSFKRIQNL 292
+ ++++ L
Sbjct: 245 LKAREKLREL 254
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 3/231 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+SL ++ +IV + +PHLL GPPGTGKT+ LA+A LYG
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + LELNASD+RGIDV+R +I+D+A T KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYARTLPIG---DVPFKLVILDEADNMTGDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E +++NTRF LI N +KII +QSRC FRF PL +RL+ + + EG+ V +
Sbjct: 123 RTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
G L A+ GD+RKA+N LQ+ S+ +TEE VY G PK++ ++
Sbjct: 183 GALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREM 233
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 168/268 (62%), Gaps = 7/268 (2%)
Query: 30 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89
I S T P K PWVEKYRPQ + + ++RDI+ ++ + LPHLL +GP G+GKTS
Sbjct: 7 IASRTEPK-KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTS 65
Query: 90 TILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVL 146
TI AR++YG + MILELNAS++RGI+ VR +I++F S++S F GV+ KLV+
Sbjct: 66 TIKCCAREIYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVI 125
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDE D+MT +AQ LR+ IEK + TRF LICN ++KI ALQSRC FRF+PL + +
Sbjct: 126 LDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMH 185
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNP 265
RL + EG+ + + +++++ GDMR A+N LQ ++ I E VY +G+
Sbjct: 186 GRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISGHC 245
Query: 266 LPKDIEQISYWL--LNESFADSFKRIQN 291
+P+ + + L LN++ S K+ N
Sbjct: 246 MPEIVTDVFDILFSLNKNKTKSLKKSVN 273
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 162/252 (64%), Gaps = 8/252 (3%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L ++ +IV + + E +PHLL GPPGTGKT+ +A L+G
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV--KLVLLDEADAMTKDAQFA 160
Y +LELNASD+RGIDV+R ++++FA T+ V A++ K+VLLDEAD MT DAQ A
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTR-----VAANIPFKIVLLDEADNMTADAQQA 127
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++E YT TRF LI N +KII +QSRC FRFAPL+ V RLK + E E +++
Sbjct: 128 LRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEI 187
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
E L A+ L GDMR+A+NILQ+ A ++T ++VY G P++I Q+ L
Sbjct: 188 DEEALEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIRQMIQLALAG 246
Query: 281 SFADSFKRIQNL 292
+F D+ ++++ L
Sbjct: 247 NFNDAREKLREL 258
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 153/231 (66%), Gaps = 4/231 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP+SL D+ + +V+ + + + +PHLL GPPGTGKT+ A+A L+G
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y +LELNASD+RGI+V+R+++++FA +++ + K+VLLDEAD MT DAQ ALR
Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRT---PPEIPFKIVLLDEADNMTSDAQQALR 125
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y+ TRF LI N +KII +QSRC FRF PL V ERL+++ E EG+D E
Sbjct: 126 RLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEE 185
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
L A+ + GDMRKA+N+LQ+ ++T +AVY G P+++ ++
Sbjct: 186 EALDAIYEISEGDMRKAINVLQAASYLG-KVTVDAVYRVVGMAKPREVREM 235
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
WVEKYRP++L +V +++ + +PHLL GPPGTGKT+T +A+AR L+G
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ + +E+NASD+RGIDVVR +I++FA T A K++ LDEADA+T DAQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y+K+ RF L CN V++II +QSRC FRF P+ + +RL + E EG+ +TE
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
GL AL+ + GD RKA+N LQ + + + +Y T P+++ ++ L +F
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNF 243
Query: 283 ADS 285
++
Sbjct: 244 MEA 246
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 156/250 (62%), Gaps = 4/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+SL ++ ++IV+ + + E +PHLL GPPGTGKT+ LA+ R LYG
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T + + K++LLDEAD MT DAQ ALR
Sbjct: 67 YRQYFLELNASDERGIDVIRNKVKEFARTVASN---NVPFKVILLDEADNMTADAQQALR 123
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL + + E ++
Sbjct: 124 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDP 183
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
G+ + + GDMRKA+N++Q+ A +IT E VY G PK+I ++ + L+ F
Sbjct: 184 KGIETIFDITQGDMRKAINVIQAAS-AYGKITVETVYKVLGLAQPKEIREMLHLALSGKF 242
Query: 283 ADSFKRIQNL 292
+ +++ L
Sbjct: 243 LQARDKLREL 252
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 151/253 (59%), Gaps = 8/253 (3%)
Query: 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99
+ PWVEKYRPQ+L D+ + IV+ + + E +P+L+ GP G GKT+T +A+ + +
Sbjct: 2 SGPWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAIL 61
Query: 100 GAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF 159
G + LELNASD RGID VR I++F + V A +++ LDE D MTKDAQ
Sbjct: 62 GEYWRQNFLELNASDARGIDTVRNDIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQH 117
Query: 160 ALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLD 219
ALRR +E YTK F L CN +KII +QSRC FRF P++ + RLK++ +E +
Sbjct: 118 ALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFE 177
Query: 220 VTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 279
T+GG+ A+ GDMRKA+N+LQ+ +Q+ E+AVY P+D+ L+
Sbjct: 178 YTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHN----LIT 233
Query: 280 ESFADSFKRIQNL 292
++ + F +NL
Sbjct: 234 KALSGDFMGARNL 246
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 153/250 (61%), Gaps = 4/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP++L D+ R+I+D + + E +PHLL GPPGTGKT+ LA+ LYG
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
Y LELNASD+RGIDV+R ++++FA T K+VLLDEAD MT DAQ ALR
Sbjct: 70 YTEYFLELNASDERGIDVIRNKVKEFART---VIPGDIPFKVVLLDEADNMTADAQQALR 126
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E YT+NTRF L CN ++KII +QSR FRF PL+ V RL ++ + E + +
Sbjct: 127 RTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQ 186
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + + GDMRK++NILQ+ A +I+ EAV+ G PK++ ++ L F
Sbjct: 187 KALETIYDITMGDMRKSINILQAAS-AYGKISVEAVFKVLGLAQPKEVREMINLALQGKF 245
Query: 283 ADSFKRIQNL 292
+ +++ L
Sbjct: 246 TQARDKLRTL 255
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 211 bits (537), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 151/250 (60%), Gaps = 3/250 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V+ II +QSR RF+PL V RL+++ E EG+ V++
Sbjct: 123 RIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+N LQ S+ +TEE V G P+ + + Y + SF
Sbjct: 183 DALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVKGSF 242
Query: 283 ADSFKRIQNL 292
+ +I
Sbjct: 243 GKAATQIYGF 252
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 211 bits (536), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 154/258 (59%), Gaps = 3/258 (1%)
Query: 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAR 96
D+ W+EKYRP++LA+V +D+V+ + + LPHLL G G GKT+ +A+AR
Sbjct: 2 DVSPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAR 61
Query: 97 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
+++G ++ ELNASD+RGIDVVR QI+ FA T A+ K++ LDEADA+T+D
Sbjct: 62 EMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLG---DATFKILFLDEADALTQD 118
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E Y + RF L CN +KII +QSRC +RF PL ++E + + + E
Sbjct: 119 AQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKE 178
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYW 276
G+ + EG A+ + GDMRKA+N LQ + S +T E +Y T N P++I +
Sbjct: 179 GITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLAR 238
Query: 277 LLNESFADSFKRIQNLSF 294
L F + + + L +
Sbjct: 239 CLEGDFETAERMLHALMY 256
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 147/248 (59%), Gaps = 4/248 (1%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
I PWVEKYRPQ L D+ I+ + R E +P+L+ GP G GKT+ LA+AR+
Sbjct: 3 IMNGPWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALARE 62
Query: 98 LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA 157
+ G + LELNASD RGID VR I++F + V A +++ LDE D MTKDA
Sbjct: 63 ILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKP----VGAPFRIIFLDEVDNMTKDA 118
Query: 158 QFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG 217
Q ALRR +E YTK + F L CN +KII +QSRC FRF PL+ + +RL+++ E E
Sbjct: 119 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN 178
Query: 218 LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWL 277
L+ L +V GD+RKA+N+LQS ++ITE ++Y PKD+ ++ +
Sbjct: 179 LEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTI 238
Query: 278 LNESFADS 285
L+ F ++
Sbjct: 239 LDGKFMEA 246
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP+ L ++ +DIV + LPHLL G G GKT+ +A+AR+ +G
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ E+NASD+RGIDVVR QI++FA T + A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQTNFREMNASDERGIDVVRNQIKEFARTSPLA---GATFKILFLDEADALTTDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y + RF L CN +KII +QSRC +RF PL+ V E + + AEGL VTE
Sbjct: 125 RTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTE 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQI 273
G L A+V + +GDMRKA+N LQ + I EE ++ T P++I+++
Sbjct: 185 GALDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDEL 235
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 154/255 (60%), Gaps = 4/255 (1%)
Query: 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100
+PWVEKYRPQ+L DV IV + R E LP+++ G G GKT+ LA+A+ L G
Sbjct: 3 TPWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG 62
Query: 101 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFA 160
+ LELNASD RGID VR +I+ F ++ V A +++ LDE D MTKDAQ A
Sbjct: 63 EYWQQNFLELNASDARGIDTVRNEIKSFCKLKA----VGAPFRIIFLDEVDNMTKDAQQA 118
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR +E YTK + F L CN +KII +QSRC FRF+P++ ++ +RLK++ EG++
Sbjct: 119 LRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEA 178
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ L +V GDMRK++NILQ++ +TEEAVY PKD+ +I LN
Sbjct: 179 EQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNH 238
Query: 281 SFADSFKRIQNLSFI 295
F ++ ++++ I
Sbjct: 239 DFMEARDLLRDIMII 253
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 158/254 (62%), Gaps = 5/254 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH-VTERLKHVIEAEGLDVT 221
R++E Y +NTRF L+ N V++II + SRC FRF+P+ P H + ERLK++ ++EG++V
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM-PRHLMAERLKYIAKSEGVEVK 181
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
E + + L GDMRKA+NILQ ++ + V P DI ++ L+
Sbjct: 182 EDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVELFNLALSGD 241
Query: 282 FADSFKRIQNLSFI 295
+ + ++++ L ++
Sbjct: 242 YLKAREKMRELMYV 255
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 156/253 (61%), Gaps = 3/253 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERL+H+ ++EG+++ +
Sbjct: 123 RIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + + GDMRKA+N+LQ S+ + AV T P D+ ++ N
Sbjct: 183 DAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRPADVVELFNLAFNGDV 242
Query: 283 ADSFKRIQNLSFI 295
+ ++++ L ++
Sbjct: 243 TKAREKLRELMYV 255
>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium discoideum
GN=rfc2 PE=3 SV=1
Length = 338
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 152/252 (60%), Gaps = 4/252 (1%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP + D+ + + V ++ ++ + LP++++ GPPGTGKTS+IL +AR L GA
Sbjct: 21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGA 80
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQ-SFSFGVKASVKLVLLDEADAMTKDAQFA 160
Y + ELNASDDR +DVVR +I+ FA + + G K+++LDE D+MT AQ A
Sbjct: 81 NYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRH---KIIILDEVDSMTSGAQQA 137
Query: 161 LRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220
LRR++E Y+ TRFA CNQ KII +QSRC RF L + RL+ V++ E +
Sbjct: 138 LRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPY 197
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
T+ GLAA++ GDMR+ALN LQ+TH I E V P P I+QI
Sbjct: 198 TDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKS 257
Query: 281 SFADSFKRIQNL 292
F +++ ++ L
Sbjct: 258 DFKEAYPFLKKL 269
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 141/240 (58%), Gaps = 3/240 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W+EKYRP LAD+ DIV+ + LPHLL G G GKT+ + +AR+ +G
Sbjct: 8 WIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDS 67
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ ELNASD+RGIDVVR QI++FA T+ A+ K++ LDEADA+T DAQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKEFARTRPAG---DAAFKILFLDEADALTTDAQAALR 124
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R +E Y K RF L CN +KII +QSRC +RF PL P V E + + E LDVT
Sbjct: 125 RTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTP 184
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ A+V + GDMRKA+N LQ + S I VY T N P++I ++ L+ F
Sbjct: 185 EAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDF 244
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 149/245 (60%), Gaps = 11/245 (4%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N ++ II +QSR RF+PL V RL+++ + EG+ +++
Sbjct: 123 RIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L A+ GDMR+A+N LQ ++ITEE V G P+ LL E+
Sbjct: 183 DALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPR--------LLRETL 234
Query: 283 ADSFK 287
D+F+
Sbjct: 235 NDAFR 239
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 162/260 (62%), Gaps = 11/260 (4%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+ + D+ +I + + +PHLL GPPGTGKT+ LA+A +LYG
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGIDV+R ++++FA + K+V LDEADA+T+DAQ ALR
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAKPIG---DVPFKIVFLDEADALTRDAQQALR 120
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG--LDV 220
R++EKY+++TRF L CN +KII +QSR T F+F PLE E + +++ EG L+
Sbjct: 121 RIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILEN 180
Query: 221 TEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280
+ + AL + GD+RKA+NILQ+ M S+ IT + +Y PK+I+++ LN+
Sbjct: 181 EDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEV----LNK 236
Query: 281 SFADSFKRIQNLSFIIRLVL 300
+ +F ++ S +I L+L
Sbjct: 237 AMQGNF--LEARSMLIDLML 254
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 156/260 (60%), Gaps = 6/260 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIARE 69
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGID+VR +I++FA T A K++ LDEADA+T D
Sbjct: 70 IFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPIG---GAPFKIIFLDEADALTAD 126
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +E+++ N RF L CN +KII +QSRC +RF L + ERL+++ +
Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQ 186
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQIS 274
GL +TEGG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ +
Sbjct: 187 GLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLI 246
Query: 275 YWLLNESFADSFKRIQNLSF 294
L +F + K + L +
Sbjct: 247 ETALRGNFRIARKELNRLLY 266
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 154/234 (65%), Gaps = 7/234 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAV 258
+RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ +
Sbjct: 209 QRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 262
>sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1
Length = 359
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 155/251 (61%), Gaps = 2/251 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L +V + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 102 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 159
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL ++E E + T
Sbjct: 160 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYT 219
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ +N +
Sbjct: 220 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINAN 279
Query: 282 FADSFKRIQNL 292
+++K + +L
Sbjct: 280 IDEAYKILAHL 290
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 148/247 (59%), Gaps = 3/247 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N ++ II +QSR RF PL V RL+++ E EG+ +++
Sbjct: 123 RIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISD 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
L + GDMRKA+N LQ ++ITE+ V G P+ + + L +F
Sbjct: 183 DALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALKGNF 242
Query: 283 ADSFKRI 289
+ + +I
Sbjct: 243 SKAMTQI 249
>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2
SV=1
Length = 349
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 155/251 (61%), Gaps = 2/251 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 210 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDAN 269
Query: 282 FADSFKRIQNL 292
+++K + +L
Sbjct: 270 IDEAYKILAHL 280
>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1
Length = 349
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 155/251 (61%), Gaps = 2/251 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 92 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 149
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T
Sbjct: 150 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYT 209
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ +
Sbjct: 210 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDAN 269
Query: 282 FADSFKRIQNL 292
+++K + +L
Sbjct: 270 IDEAYKILAHL 280
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 154/246 (62%), Gaps = 5/246 (2%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
Y + +LELNASDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 70 SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQAL 127
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL +
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 282 FADSFK 287
DS +
Sbjct: 245 LEDSIQ 250
>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3
Length = 354
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 155/251 (61%), Gaps = 2/251 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 97 ALKDAMLELNASNDRGIDVVRNKIKMFAQ-QKVTLP-KGRHKIIILDEADSMTDGAQQAL 154
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T
Sbjct: 155 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYT 214
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N +
Sbjct: 215 DDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN 274
Query: 282 FADSFKRIQNL 292
+++K + +L
Sbjct: 275 IDEAYKILAHL 285
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 156/260 (60%), Gaps = 6/260 (2%)
Query: 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARK 97
IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+
Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIARE 69
Query: 98 LYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156
++G + ELNASD+RGID+VR +I++FA T A K++ LDEADA+T D
Sbjct: 70 IFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPMG---GAPFKIIFLDEADALTSD 126
Query: 157 AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE 216
AQ ALRR +EK++ N RF L CN +KII +QSRC +RF L + ERL+++ + +
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186
Query: 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQIS 274
L +T+GG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ +
Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLI 246
Query: 275 YWLLNESFADSFKRIQNLSF 294
L +F + K + L +
Sbjct: 247 ETALRGNFRVARKELNRLLY 266
>sp|Q05B83|RFC2_BOVIN Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1
Length = 352
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 155/251 (61%), Gaps = 2/251 (0%)
Query: 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101
PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 102 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFAL 161
+ +LELNAS+DRGIDVVR +I+ FA Q + K K+++LDEAD+MT AQ AL
Sbjct: 95 ALKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTL-PKGRHKIIILDEADSMTDGAQQAL 152
Query: 162 RRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT 221
RR +E Y+K TRFAL CN +KII +QSRC R+ L + + RL VIE E + T
Sbjct: 153 RRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYT 212
Query: 222 EGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 281
+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ ++
Sbjct: 213 DDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSAD 272
Query: 282 FADSFKRIQNL 292
+++K + +L
Sbjct: 273 IDEAYKILAHL 283
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 152/234 (64%), Gaps = 7/234 (2%)
Query: 32 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTI 91
SG +K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTI
Sbjct: 29 SGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTI 88
Query: 92 LAVARKLYGAQYHNM-ILELNASDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVL 146
LA AR+L+G + + +LELNASD+RGI VVR+++++FA + S S G K+V+
Sbjct: 89 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 148
Query: 147 LDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVT 206
LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL
Sbjct: 149 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 208
Query: 207 ERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAV 258
ERL + E E + + +A LV++ GD+RKA+ LQS ++++E+ +
Sbjct: 209 ERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVI 262
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 155/253 (61%), Gaps = 3/253 (1%)
Query: 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102
W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALR 162
+ LELNASD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALR 122
Query: 163 RVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222
R++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERLK + + EG+++ E
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELRE 182
Query: 223 GGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESF 282
+ + L GDMRKA+N+LQ ++ + AV P DI ++ ++ F
Sbjct: 183 DAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDF 242
Query: 283 ADSFKRIQNLSFI 295
+ ++++ L ++
Sbjct: 243 VKAREKLRELMYL 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,181,165
Number of Sequences: 539616
Number of extensions: 4476986
Number of successful extensions: 22138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 20814
Number of HSP's gapped (non-prelim): 1388
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)