Query 021937
Match_columns 305
No_of_seqs 199 out of 2411
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0989 Replication factor C, 100.0 1.1E-40 2.3E-45 269.3 23.6 265 39-303 22-292 (346)
2 PLN03025 replication factor C 100.0 2.6E-39 5.7E-44 278.2 28.4 261 41-303 1-261 (319)
3 PRK14956 DNA polymerase III su 100.0 6.8E-38 1.5E-42 274.4 26.8 258 39-301 4-283 (484)
4 PRK07003 DNA polymerase III su 100.0 5E-37 1.1E-41 278.2 29.1 253 40-297 3-276 (830)
5 PRK14958 DNA polymerase III su 100.0 2.7E-37 5.9E-42 277.8 27.2 259 40-303 3-282 (509)
6 PRK06645 DNA polymerase III su 100.0 8.7E-37 1.9E-41 272.6 29.5 262 37-303 5-294 (507)
7 PRK14964 DNA polymerase III su 100.0 7.1E-37 1.5E-41 271.0 28.5 253 42-300 2-275 (491)
8 KOG0991 Replication factor C, 100.0 2.5E-37 5.4E-42 240.3 20.9 255 39-295 13-267 (333)
9 PRK14962 DNA polymerase III su 100.0 3E-36 6.4E-41 268.4 28.5 258 41-303 2-280 (472)
10 PRK14952 DNA polymerase III su 100.0 5.1E-36 1.1E-40 271.5 29.3 256 42-302 2-281 (584)
11 PRK14960 DNA polymerase III su 100.0 4.4E-36 9.5E-41 269.6 28.0 255 40-299 2-277 (702)
12 PRK12323 DNA polymerase III su 100.0 2.8E-36 6.2E-41 270.1 26.1 254 40-298 3-282 (700)
13 PRK14951 DNA polymerase III su 100.0 6.3E-36 1.4E-40 271.7 27.9 258 40-302 3-286 (618)
14 PRK14949 DNA polymerase III su 100.0 7.6E-36 1.6E-40 275.3 28.1 256 40-300 3-279 (944)
15 PRK14961 DNA polymerase III su 100.0 1.4E-35 3E-40 258.8 28.2 258 40-302 3-281 (363)
16 PRK05896 DNA polymerase III su 100.0 1.6E-35 3.4E-40 266.0 27.3 256 40-300 3-279 (605)
17 PRK14963 DNA polymerase III su 100.0 3.8E-35 8.2E-40 263.3 29.9 257 42-303 3-278 (504)
18 PRK09111 DNA polymerase III su 100.0 5.1E-35 1.1E-39 266.4 29.5 263 36-303 7-295 (598)
19 PRK08691 DNA polymerase III su 100.0 2.6E-35 5.6E-40 266.9 27.4 257 40-301 3-280 (709)
20 COG2812 DnaX DNA polymerase II 100.0 4.4E-36 9.5E-41 264.8 21.5 257 40-301 3-280 (515)
21 PRK08451 DNA polymerase III su 100.0 7.9E-35 1.7E-39 260.1 29.7 248 41-293 2-270 (535)
22 COG2256 MGS1 ATPase related to 100.0 2.6E-35 5.6E-40 246.7 24.2 249 41-302 12-285 (436)
23 PRK07994 DNA polymerase III su 100.0 5.1E-35 1.1E-39 266.3 28.2 254 40-298 3-277 (647)
24 PRK00440 rfc replication facto 100.0 2E-34 4.3E-39 249.5 29.7 253 39-294 3-255 (319)
25 PRK14957 DNA polymerase III su 100.0 1.2E-34 2.5E-39 260.4 29.0 252 40-296 3-275 (546)
26 PRK14965 DNA polymerase III su 100.0 7.4E-35 1.6E-39 266.7 27.3 257 40-301 3-280 (576)
27 PRK05563 DNA polymerase III su 100.0 1.6E-34 3.4E-39 263.3 29.2 258 40-302 3-281 (559)
28 PRK06305 DNA polymerase III su 100.0 1.2E-34 2.6E-39 257.9 27.6 260 39-303 3-284 (451)
29 PRK07764 DNA polymerase III su 100.0 1E-34 2.3E-39 272.2 28.5 253 41-298 3-279 (824)
30 PRK14953 DNA polymerase III su 100.0 1.9E-34 4.1E-39 258.0 28.7 259 40-303 3-282 (486)
31 PRK07133 DNA polymerase III su 100.0 1.5E-34 3.3E-39 264.4 28.5 258 39-301 4-279 (725)
32 PRK14955 DNA polymerase III su 100.0 2.1E-34 4.5E-39 254.2 25.4 259 40-303 3-295 (397)
33 PRK14959 DNA polymerase III su 100.0 3.6E-34 7.8E-39 258.5 27.1 253 40-297 3-276 (624)
34 PRK14969 DNA polymerase III su 100.0 4E-34 8.7E-39 258.9 27.0 254 40-298 3-277 (527)
35 PRK14954 DNA polymerase III su 100.0 5.4E-34 1.2E-38 260.0 27.9 259 40-303 3-295 (620)
36 PRK12402 replication factor C 100.0 1.8E-33 3.8E-38 245.3 29.3 249 41-293 3-278 (337)
37 PRK06647 DNA polymerase III su 100.0 9.7E-34 2.1E-38 257.1 28.0 259 40-303 3-282 (563)
38 TIGR02397 dnaX_nterm DNA polym 100.0 2.5E-33 5.4E-38 246.0 28.9 258 40-302 1-279 (355)
39 PRK14971 DNA polymerase III su 100.0 1.3E-33 2.9E-38 258.9 27.9 261 38-303 2-284 (614)
40 PRK14970 DNA polymerase III su 100.0 6.1E-33 1.3E-37 243.9 28.4 260 39-303 3-271 (367)
41 PRK14948 DNA polymerase III su 100.0 6.2E-33 1.3E-37 254.5 29.3 259 40-303 3-283 (620)
42 PRK14950 DNA polymerase III su 100.0 1E-32 2.2E-37 253.8 28.9 259 40-303 3-283 (585)
43 PRK04195 replication factor C 100.0 1.2E-30 2.6E-35 236.0 26.8 242 41-292 2-253 (482)
44 PRK13342 recombination factor 100.0 1.6E-30 3.4E-35 231.0 25.7 248 42-302 1-266 (413)
45 PRK13341 recombination factor 100.0 1.9E-30 4.2E-35 241.0 25.0 252 39-302 14-294 (725)
46 KOG2028 ATPase related to the 100.0 1.3E-30 2.8E-35 215.4 17.8 254 40-302 125-415 (554)
47 PF05496 RuvB_N: Holliday junc 100.0 6E-30 1.3E-34 201.4 17.8 197 36-248 7-227 (233)
48 PHA02544 44 clamp loader, smal 100.0 4.9E-28 1.1E-32 209.0 27.8 237 36-287 4-249 (316)
49 KOG2035 Replication factor C, 100.0 2.7E-28 5.9E-33 194.6 23.8 259 42-301 2-290 (351)
50 KOG0990 Replication factor C, 100.0 3.1E-29 6.7E-34 204.1 16.3 267 35-301 23-296 (360)
51 PRK04132 replication factor C 99.9 5.6E-26 1.2E-30 212.2 25.1 214 77-293 567-782 (846)
52 PRK09112 DNA polymerase III su 99.9 2.2E-24 4.8E-29 185.9 25.0 237 46-293 16-289 (351)
53 PRK00080 ruvB Holliday junctio 99.9 6.5E-25 1.4E-29 189.9 21.8 208 41-264 13-249 (328)
54 PRK05564 DNA polymerase III su 99.9 1.1E-23 2.3E-28 181.1 22.8 185 50-243 1-191 (313)
55 PRK07471 DNA polymerase III su 99.9 2.9E-23 6.2E-28 179.9 25.2 190 47-245 13-241 (365)
56 COG2255 RuvB Holliday junction 99.9 9E-24 1.9E-28 169.8 19.3 204 43-262 16-248 (332)
57 TIGR00635 ruvB Holliday juncti 99.9 2.2E-23 4.8E-28 179.1 21.3 199 50-264 1-228 (305)
58 TIGR02902 spore_lonB ATP-depen 99.9 3.1E-23 6.7E-28 188.8 21.4 226 40-266 52-333 (531)
59 KOG1969 DNA replication checkp 99.9 1.9E-22 4.1E-27 180.3 24.1 209 39-253 257-521 (877)
60 PRK07940 DNA polymerase III su 99.9 6.1E-23 1.3E-27 179.3 19.8 183 51-243 3-214 (394)
61 PRK07399 DNA polymerase III su 99.9 5E-22 1.1E-26 169.1 24.5 230 51-293 2-270 (314)
62 PRK08084 DNA replication initi 99.9 2.3E-22 4.9E-27 165.5 20.7 198 51-263 20-234 (235)
63 PRK08058 DNA polymerase III su 99.9 1.4E-21 2.9E-26 168.5 23.2 182 51-244 3-206 (329)
64 TIGR00678 holB DNA polymerase 99.9 1.5E-21 3.3E-26 155.7 17.9 166 63-239 2-188 (188)
65 PRK05707 DNA polymerase III su 99.9 8.7E-21 1.9E-25 162.3 23.4 171 65-244 12-205 (328)
66 PRK08727 hypothetical protein; 99.9 6E-21 1.3E-25 156.8 21.5 200 51-265 17-231 (233)
67 PRK07993 DNA polymerase III su 99.9 6.8E-21 1.5E-25 163.4 22.3 178 58-245 7-207 (334)
68 PRK06893 DNA replication initi 99.9 3.3E-21 7.1E-26 158.1 19.1 200 49-263 12-228 (229)
69 COG0470 HolB ATPase involved i 99.9 5.1E-21 1.1E-25 166.1 18.5 184 54-249 2-206 (325)
70 PRK06871 DNA polymerase III su 99.9 5.4E-20 1.2E-24 156.2 23.3 178 58-245 7-206 (325)
71 PRK08769 DNA polymerase III su 99.9 6.6E-20 1.4E-24 155.5 23.2 176 58-244 9-210 (319)
72 PRK08903 DnaA regulatory inact 99.9 3.1E-20 6.8E-25 152.7 19.1 198 48-264 13-225 (227)
73 PRK06090 DNA polymerase III su 99.9 1.1E-19 2.4E-24 154.0 22.4 174 58-244 8-203 (319)
74 TIGR00602 rad24 checkpoint pro 99.9 2.6E-20 5.6E-25 170.4 19.5 211 38-249 69-330 (637)
75 COG1222 RPT1 ATP-dependent 26S 99.9 1.9E-20 4.1E-25 155.3 16.7 197 51-262 149-389 (406)
76 PTZ00112 origin recognition co 99.9 1.1E-19 2.4E-24 167.0 22.1 212 53-264 755-1005(1164)
77 COG1223 Predicted ATPase (AAA+ 99.8 5.4E-20 1.2E-24 146.2 15.5 205 45-264 113-354 (368)
78 TIGR02881 spore_V_K stage V sp 99.8 1.4E-19 3E-24 151.6 19.0 189 52-248 5-236 (261)
79 PRK05642 DNA replication initi 99.8 2.3E-19 4.9E-24 147.5 19.6 208 41-263 6-233 (234)
80 TIGR03420 DnaA_homol_Hda DnaA 99.8 1.4E-19 3E-24 148.9 18.0 198 50-262 12-225 (226)
81 TIGR02928 orc1/cdc6 family rep 99.8 7E-19 1.5E-23 155.1 23.7 222 41-265 6-274 (365)
82 PRK06964 DNA polymerase III su 99.8 2.1E-18 4.5E-23 147.6 24.3 169 60-243 8-226 (342)
83 PF13177 DNA_pol3_delta2: DNA 99.8 1.8E-19 4E-24 139.4 16.1 140 57-201 1-162 (162)
84 PRK06620 hypothetical protein; 99.8 5.3E-19 1.1E-23 142.9 18.9 190 43-262 9-213 (214)
85 PRK09087 hypothetical protein; 99.8 5.2E-19 1.1E-23 144.2 16.8 198 41-264 8-221 (226)
86 PRK00411 cdc6 cell division co 99.8 1.9E-18 4.2E-23 153.8 21.9 220 43-265 23-282 (394)
87 TIGR02903 spore_lon_C ATP-depe 99.8 4.1E-18 8.8E-23 157.7 22.6 226 41-267 142-432 (615)
88 PF00308 Bac_DnaA: Bacterial d 99.8 1.7E-18 3.8E-23 140.6 16.9 189 51-248 6-214 (219)
89 PF03215 Rad17: Rad17 cell cyc 99.8 3E-18 6.6E-23 154.3 20.0 206 38-248 4-269 (519)
90 PRK14087 dnaA chromosomal repl 99.8 6.6E-18 1.4E-22 150.9 20.1 213 49-264 111-347 (450)
91 CHL00181 cbbX CbbX; Provisiona 99.8 7.7E-18 1.7E-22 142.0 18.9 188 53-248 23-252 (287)
92 TIGR02880 cbbX_cfxQ probable R 99.8 7.7E-18 1.7E-22 142.1 18.1 184 53-248 22-251 (284)
93 COG1474 CDC6 Cdc6-related prot 99.8 2.4E-17 5.3E-22 142.8 21.0 218 45-265 12-265 (366)
94 KOG0733 Nuclear AAA ATPase (VC 99.8 9E-18 2E-22 147.9 18.2 178 51-243 188-403 (802)
95 KOG0730 AAA+-type ATPase [Post 99.8 9E-18 2E-22 149.4 18.4 187 47-249 428-651 (693)
96 PRK05917 DNA polymerase III su 99.8 8.9E-17 1.9E-21 133.7 23.1 158 60-237 4-176 (290)
97 PRK07132 DNA polymerase III su 99.8 1.5E-16 3.2E-21 134.1 24.4 174 60-244 3-186 (299)
98 PRK00149 dnaA chromosomal repl 99.8 4.7E-17 1E-21 146.6 22.7 205 51-264 120-348 (450)
99 KOG1970 Checkpoint RAD17-RFC c 99.8 8.5E-17 1.9E-21 140.4 22.9 206 38-248 67-321 (634)
100 TIGR00362 DnaA chromosomal rep 99.8 4.6E-17 1E-21 145.0 21.8 210 51-264 108-336 (405)
101 TIGR02639 ClpA ATP-dependent C 99.8 1.9E-17 4.1E-22 157.0 20.0 215 41-262 170-426 (731)
102 TIGR01241 FtsH_fam ATP-depende 99.8 2.9E-17 6.2E-22 149.7 20.3 203 47-264 49-294 (495)
103 CHL00195 ycf46 Ycf46; Provisio 99.8 9.1E-17 2E-21 143.9 22.3 203 50-266 225-464 (489)
104 PRK14088 dnaA chromosomal repl 99.8 4.6E-17 1E-21 145.4 19.9 210 51-263 103-330 (440)
105 PRK12422 chromosomal replicati 99.8 3.2E-17 7E-22 146.0 18.8 207 51-263 109-341 (445)
106 PRK14086 dnaA chromosomal repl 99.8 1.1E-16 2.3E-21 145.0 21.5 209 51-263 286-513 (617)
107 PRK03992 proteasome-activating 99.8 1.4E-16 2.9E-21 140.5 20.3 199 50-263 128-370 (389)
108 PRK07276 DNA polymerase III su 99.8 4.1E-16 8.8E-21 130.3 22.1 172 57-243 6-198 (290)
109 TIGR03345 VI_ClpV1 type VI sec 99.8 5E-17 1.1E-21 155.3 18.8 198 41-248 175-408 (852)
110 PTZ00361 26 proteosome regulat 99.8 7.2E-17 1.6E-21 142.5 18.4 206 44-264 174-423 (438)
111 CHL00176 ftsH cell division pr 99.8 1.5E-16 3.4E-21 146.8 21.0 200 50-264 180-422 (638)
112 COG0593 DnaA ATPase involved i 99.8 6.7E-17 1.5E-21 139.7 17.2 206 51-264 85-312 (408)
113 PTZ00454 26S protease regulato 99.7 3.4E-16 7.3E-21 137.4 20.8 201 49-264 141-385 (398)
114 PRK05818 DNA polymerase III su 99.7 1.1E-15 2.4E-20 124.4 20.9 204 76-292 9-242 (261)
115 PRK08699 DNA polymerase III su 99.7 1.8E-15 3.9E-20 129.6 21.9 145 60-211 8-183 (325)
116 COG1224 TIP49 DNA helicase TIP 99.7 1.1E-15 2.5E-20 126.9 19.1 121 142-263 292-430 (450)
117 KOG0738 AAA+-type ATPase [Post 99.7 7.1E-16 1.5E-20 129.4 17.9 232 50-295 209-487 (491)
118 KOG0733 Nuclear AAA ATPase (VC 99.7 5.2E-16 1.1E-20 136.9 17.7 236 50-295 508-787 (802)
119 KOG0734 AAA+-type ATPase conta 99.7 1.1E-15 2.3E-20 133.1 16.8 202 44-261 295-537 (752)
120 PF06068 TIP49: TIP49 C-termin 99.7 1.5E-15 3.1E-20 128.1 17.2 105 142-247 279-396 (398)
121 PRK05907 hypothetical protein; 99.7 1.1E-14 2.5E-19 123.6 22.3 224 63-304 8-243 (311)
122 TIGR01242 26Sp45 26S proteasom 99.7 1.8E-15 4E-20 132.8 17.6 204 49-263 118-361 (364)
123 TIGR03689 pup_AAA proteasome A 99.7 2E-15 4.4E-20 135.2 17.9 167 44-215 173-380 (512)
124 PRK05629 hypothetical protein; 99.7 1.1E-14 2.5E-19 125.5 21.3 220 74-303 6-230 (318)
125 TIGR01243 CDC48 AAA family ATP 99.7 8.9E-15 1.9E-19 139.3 22.5 183 49-247 449-669 (733)
126 PLN00020 ribulose bisphosphate 99.7 2.4E-15 5.2E-20 127.1 15.4 148 76-235 150-331 (413)
127 PRK07452 DNA polymerase III su 99.7 1.2E-14 2.6E-19 126.0 20.4 220 75-303 2-236 (326)
128 PRK07914 hypothetical protein; 99.7 2.7E-14 5.8E-19 123.2 22.1 219 75-303 6-232 (320)
129 TIGR03346 chaperone_ClpB ATP-d 99.7 2.3E-15 4.9E-20 145.0 17.0 202 41-248 161-394 (852)
130 KOG0727 26S proteasome regulat 99.7 6.1E-15 1.3E-19 117.3 16.4 196 51-263 153-394 (408)
131 TIGR03015 pepcterm_ATPase puta 99.7 2.5E-14 5.5E-19 120.8 21.1 203 58-264 28-265 (269)
132 KOG0731 AAA+-type ATPase conta 99.7 6E-15 1.3E-19 135.3 18.2 202 48-263 306-551 (774)
133 TIGR00763 lon ATP-dependent pr 99.6 3.6E-15 7.7E-20 142.4 15.9 198 54-266 321-587 (775)
134 TIGR02640 gas_vesic_GvpN gas v 99.6 3.7E-14 8E-19 118.7 20.1 192 59-262 8-254 (262)
135 PRK11034 clpA ATP-dependent Cl 99.6 1.4E-14 3.1E-19 136.1 19.2 210 48-262 181-430 (758)
136 PRK10865 protein disaggregatio 99.6 4.9E-15 1.1E-19 142.1 16.0 199 41-249 166-400 (857)
137 PRK08487 DNA polymerase III su 99.6 1.4E-13 3E-18 119.1 23.1 227 63-303 4-236 (328)
138 KOG0736 Peroxisome assembly fa 99.6 1.9E-14 4.1E-19 130.3 18.1 169 50-234 669-877 (953)
139 TIGR03345 VI_ClpV1 type VI sec 99.6 8E-15 1.7E-19 140.3 16.7 193 53-247 566-827 (852)
140 PRK06585 holA DNA polymerase I 99.6 1.5E-13 3.3E-18 120.0 23.3 230 64-303 8-248 (343)
141 KOG0743 AAA+-type ATPase [Post 99.6 2.6E-14 5.7E-19 122.9 17.8 198 48-280 196-434 (457)
142 PRK11034 clpA ATP-dependent Cl 99.6 1.3E-14 2.8E-19 136.5 16.5 186 54-244 459-709 (758)
143 CHL00095 clpC Clp protease ATP 99.6 2E-14 4.2E-19 138.2 17.7 195 47-248 173-399 (821)
144 KOG0728 26S proteasome regulat 99.6 3.1E-14 6.8E-19 113.1 15.5 168 52-234 146-351 (404)
145 PRK13407 bchI magnesium chelat 99.6 3.8E-14 8.2E-19 121.3 17.0 215 48-264 3-305 (334)
146 KOG1514 Origin recognition com 99.6 7.7E-14 1.7E-18 125.4 19.6 194 55-250 398-628 (767)
147 TIGR01128 holA DNA polymerase 99.6 1.9E-13 4E-18 117.5 21.3 204 91-303 4-216 (302)
148 COG0542 clpA ATP-binding subun 99.6 1.4E-14 3E-19 133.8 14.8 192 53-246 491-750 (786)
149 TIGR02639 ClpA ATP-dependent C 99.6 2.2E-14 4.7E-19 136.3 16.1 189 53-246 454-707 (731)
150 KOG0737 AAA+-type ATPase [Post 99.6 2.7E-14 5.9E-19 119.6 14.3 187 51-248 90-309 (386)
151 PRK10733 hflB ATP-dependent me 99.6 6.3E-14 1.4E-18 130.9 18.2 202 46-262 145-389 (644)
152 PF05673 DUF815: Protein of un 99.6 2.5E-13 5.4E-18 109.2 18.5 190 45-247 19-246 (249)
153 PRK05574 holA DNA polymerase I 99.6 1.3E-12 2.9E-17 114.1 24.2 230 64-303 7-251 (340)
154 KOG0739 AAA+-type ATPase [Post 99.6 2.6E-14 5.7E-19 116.2 12.1 174 51-234 131-333 (439)
155 TIGR01817 nifA Nif-specific re 99.6 1.3E-13 2.9E-18 127.1 18.2 207 49-259 192-439 (534)
156 KOG1942 DNA helicase, TBP-inte 99.6 1.6E-13 3.4E-18 111.5 16.1 120 142-262 297-435 (456)
157 CHL00206 ycf2 Ycf2; Provisiona 99.6 9.3E-14 2E-18 137.0 17.4 178 74-265 1630-1877(2281)
158 PRK10787 DNA-binding ATP-depen 99.6 9E-14 1.9E-18 131.8 16.8 207 54-267 323-584 (784)
159 TIGR03346 chaperone_ClpB ATP-d 99.6 1.3E-13 2.9E-18 132.8 18.1 193 53-247 565-822 (852)
160 COG0464 SpoVK ATPases of the A 99.6 6.1E-14 1.3E-18 128.3 15.0 205 50-264 239-482 (494)
161 PF01637 Arch_ATPase: Archaeal 99.6 7.1E-14 1.5E-18 115.4 14.1 184 55-241 1-233 (234)
162 TIGR02974 phageshock_pspF psp 99.6 3E-13 6.4E-18 116.6 17.7 199 55-257 1-242 (329)
163 PRK13531 regulatory ATPase Rav 99.6 2E-12 4.3E-17 114.3 23.0 236 53-295 20-319 (498)
164 PF00004 AAA: ATPase family as 99.6 4.6E-14 1E-18 105.9 11.0 113 77-198 1-131 (132)
165 KOG0652 26S proteasome regulat 99.6 1.2E-13 2.7E-18 110.4 13.7 168 51-233 169-374 (424)
166 PRK14700 recombination factor 99.6 1E-13 2.2E-18 114.4 13.6 130 173-302 10-162 (300)
167 KOG0729 26S proteasome regulat 99.6 8.8E-14 1.9E-18 111.6 12.8 169 51-235 175-382 (435)
168 KOG1968 Replication factor C, 99.5 7E-14 1.5E-18 131.9 14.0 203 40-249 307-538 (871)
169 PRK10865 protein disaggregatio 99.5 3.2E-13 6.9E-18 129.8 18.7 194 52-247 567-825 (857)
170 KOG0726 26S proteasome regulat 99.5 3.5E-14 7.7E-19 115.1 10.1 199 48-262 180-423 (440)
171 COG2204 AtoC Response regulato 99.5 6.1E-13 1.3E-17 117.0 18.7 205 51-259 139-385 (464)
172 CHL00095 clpC Clp protease ATP 99.5 2.3E-13 4.9E-18 130.9 17.4 192 53-246 509-777 (821)
173 CHL00081 chlI Mg-protoporyphyr 99.5 5.9E-13 1.3E-17 114.2 17.8 218 46-265 9-322 (350)
174 TIGR02030 BchI-ChlI magnesium 99.5 9E-13 1.9E-17 113.1 18.7 214 51-264 2-308 (337)
175 PRK06581 DNA polymerase III su 99.5 7.6E-12 1.7E-16 99.9 22.2 176 62-245 2-190 (263)
176 KOG2227 Pre-initiation complex 99.5 2.7E-13 5.9E-18 116.8 14.7 197 51-247 148-376 (529)
177 COG1221 PspF Transcriptional r 99.5 1.8E-13 3.9E-18 118.2 13.7 198 50-250 75-309 (403)
178 TIGR01243 CDC48 AAA family ATP 99.5 6.2E-13 1.4E-17 126.8 18.4 176 49-240 174-385 (733)
179 COG0466 Lon ATP-dependent Lon 99.5 1.5E-13 3.4E-18 124.0 13.2 208 54-266 324-585 (782)
180 PRK11608 pspF phage shock prot 99.5 1.3E-12 2.7E-17 112.8 18.0 196 52-250 5-240 (326)
181 PRK10820 DNA-binding transcrip 99.5 7.8E-13 1.7E-17 121.0 17.5 206 49-258 200-447 (520)
182 cd00009 AAA The AAA+ (ATPases 99.5 5.1E-13 1.1E-17 101.9 13.3 140 57-198 2-150 (151)
183 TIGR02329 propionate_PrpR prop 99.5 1.5E-12 3.1E-17 118.4 17.7 208 50-261 209-466 (526)
184 KOG0735 AAA+-type ATPase [Post 99.5 1.1E-12 2.4E-17 118.0 16.5 186 51-247 665-885 (952)
185 PRK11388 DNA-binding transcrip 99.5 1.5E-12 3.2E-17 122.7 18.1 210 50-262 322-568 (638)
186 PRK15424 propionate catabolism 99.5 1.4E-12 3.1E-17 118.4 17.2 208 50-259 216-479 (538)
187 PRK05342 clpX ATP-dependent pr 99.5 1.1E-12 2.3E-17 115.7 15.6 173 54-232 72-357 (412)
188 KOG0730 AAA+-type ATPase [Post 99.5 8E-13 1.7E-17 118.3 14.4 217 53-283 184-434 (693)
189 KOG0740 AAA+-type ATPase [Post 99.5 6.1E-13 1.3E-17 115.3 12.8 189 47-248 147-369 (428)
190 COG0465 HflB ATP-dependent Zn 99.5 1.2E-12 2.6E-17 118.2 15.1 198 50-262 147-387 (596)
191 PRK05022 anaerobic nitric oxid 99.5 7.8E-12 1.7E-16 114.4 19.5 196 51-250 185-420 (509)
192 COG1466 HolA DNA polymerase II 99.4 2.8E-11 6E-16 105.0 21.0 230 65-303 6-245 (334)
193 COG3829 RocR Transcriptional r 99.4 9.3E-12 2E-16 109.8 18.0 207 49-259 241-491 (560)
194 TIGR01650 PD_CobS cobaltochela 99.4 2E-11 4.4E-16 103.2 19.1 178 47-231 39-251 (327)
195 KOG2004 Mitochondrial ATP-depe 99.4 1.9E-12 4.1E-17 116.7 12.9 189 54-247 412-642 (906)
196 PF05621 TniB: Bacterial TniB 99.4 2.4E-11 5.2E-16 100.9 18.0 204 59-262 43-286 (302)
197 COG2607 Predicted ATPase (AAA+ 99.4 3.3E-11 7.1E-16 95.5 17.7 190 46-248 53-279 (287)
198 KOG0742 AAA+-type ATPase [Post 99.4 2.3E-12 4.9E-17 109.3 11.8 153 51-216 353-531 (630)
199 TIGR02442 Cob-chelat-sub cobal 99.4 2.6E-11 5.7E-16 113.4 18.8 213 51-263 2-302 (633)
200 PRK15429 formate hydrogenlyase 99.4 1.8E-11 3.9E-16 116.2 17.8 197 50-250 373-609 (686)
201 TIGR00382 clpX endopeptidase C 99.4 2.6E-11 5.6E-16 106.5 16.6 189 53-247 77-381 (413)
202 KOG0651 26S proteasome regulat 99.4 1.8E-11 4E-16 100.4 14.1 170 51-234 130-339 (388)
203 KOG2680 DNA helicase TIP49, TB 99.4 1E-10 2.2E-15 95.7 17.8 120 142-262 289-426 (454)
204 TIGR02915 PEP_resp_reg putativ 99.4 7.7E-11 1.7E-15 106.8 18.9 205 51-259 137-383 (445)
205 COG3283 TyrR Transcriptional r 99.4 1.2E-10 2.6E-15 97.5 17.9 207 50-258 201-442 (511)
206 PF00931 NB-ARC: NB-ARC domain 99.4 5.9E-11 1.3E-15 101.2 16.8 185 58-246 1-206 (287)
207 KOG0732 AAA+-type ATPase conta 99.4 2.9E-11 6.3E-16 114.5 16.0 190 50-244 262-482 (1080)
208 COG3604 FhlA Transcriptional r 99.3 6.3E-11 1.4E-15 103.3 16.3 196 51-250 221-456 (550)
209 COG0542 clpA ATP-binding subun 99.3 7.6E-11 1.6E-15 109.5 16.5 191 47-248 164-391 (786)
210 TIGR00390 hslU ATP-dependent p 99.3 7.2E-11 1.6E-15 102.5 14.7 109 140-248 246-402 (441)
211 PF07728 AAA_5: AAA domain (dy 99.3 3.4E-12 7.3E-17 96.7 5.8 112 76-192 1-139 (139)
212 PRK10923 glnG nitrogen regulat 99.3 1.1E-10 2.4E-15 106.4 16.5 205 51-259 136-382 (469)
213 PRK08485 DNA polymerase III su 99.3 4.8E-11 1E-15 92.7 11.8 131 107-246 28-171 (206)
214 PHA02244 ATPase-like protein 99.3 1.2E-10 2.7E-15 99.5 15.1 131 64-204 111-265 (383)
215 PRK05201 hslU ATP-dependent pr 99.3 1.1E-10 2.4E-15 101.4 14.7 109 140-248 248-404 (443)
216 KOG0744 AAA+-type ATPase [Post 99.3 6.3E-11 1.4E-15 97.8 12.0 157 52-215 141-342 (423)
217 PRK15115 response regulator Gl 99.3 1.1E-09 2.4E-14 99.2 21.5 205 54-262 135-381 (444)
218 TIGR00764 lon_rel lon-related 99.3 4.8E-10 1E-14 104.1 19.3 126 140-265 216-391 (608)
219 COG0714 MoxR-like ATPases [Gen 99.3 2.1E-10 4.6E-15 99.5 15.5 143 54-203 25-192 (329)
220 PF01078 Mg_chelatase: Magnesi 99.3 1.7E-11 3.6E-16 96.7 7.2 114 51-168 1-133 (206)
221 TIGR01818 ntrC nitrogen regula 99.3 6.2E-10 1.4E-14 101.4 18.6 204 53-260 134-379 (463)
222 KOG0735 AAA+-type ATPase [Post 99.2 5.1E-10 1.1E-14 101.2 17.3 192 74-271 431-654 (952)
223 PF00158 Sigma54_activat: Sigm 99.2 1.1E-10 2.4E-15 90.7 11.3 122 55-180 1-143 (168)
224 TIGR02031 BchD-ChlD magnesium 99.2 7.9E-10 1.7E-14 102.4 17.8 188 71-263 13-256 (589)
225 PRK12377 putative replication 99.2 6.9E-11 1.5E-15 97.3 9.6 132 45-181 66-206 (248)
226 PF07724 AAA_2: AAA domain (Cd 99.2 3.3E-11 7.2E-16 93.9 7.3 102 75-182 4-131 (171)
227 PRK11361 acetoacetate metaboli 99.2 9.3E-10 2E-14 100.1 17.9 203 53-259 143-387 (457)
228 PRK11331 5-methylcytosine-spec 99.2 2.9E-10 6.3E-15 99.9 12.6 150 52-210 174-369 (459)
229 PRK13765 ATP-dependent proteas 99.2 1.2E-09 2.5E-14 101.3 17.1 124 139-262 224-397 (637)
230 smart00350 MCM minichromosome 99.2 5.3E-10 1.1E-14 102.3 14.4 155 54-213 204-400 (509)
231 PRK04841 transcriptional regul 99.1 1.6E-08 3.6E-13 99.7 24.2 188 48-245 9-228 (903)
232 PRK08116 hypothetical protein; 99.1 1E-09 2.2E-14 91.9 13.0 152 46-202 78-251 (268)
233 PF13173 AAA_14: AAA domain 99.1 9.7E-10 2.1E-14 81.8 10.9 120 75-205 3-127 (128)
234 PRK08181 transposase; Validate 99.1 6.2E-10 1.3E-14 92.8 10.5 105 67-181 101-209 (269)
235 PF07726 AAA_3: ATPase family 99.1 9.9E-10 2.1E-14 79.6 9.8 111 76-192 1-129 (131)
236 PRK07952 DNA replication prote 99.1 6.3E-10 1.4E-14 91.4 10.0 129 44-181 63-205 (244)
237 PF14532 Sigma54_activ_2: Sigm 99.1 4.5E-10 9.7E-15 84.8 8.2 125 56-199 1-137 (138)
238 TIGR00368 Mg chelatase-related 99.1 3.9E-09 8.5E-14 95.5 15.3 151 50-204 189-395 (499)
239 PRK10365 transcriptional regul 99.1 1E-08 2.3E-13 92.8 18.0 203 55-260 141-384 (441)
240 PF05729 NACHT: NACHT domain 99.1 2.9E-09 6.3E-14 82.9 12.3 139 76-214 2-164 (166)
241 PRK06526 transposase; Provisio 99.1 4.7E-10 1E-14 93.0 8.0 122 74-203 98-237 (254)
242 KOG2170 ATPase of the AAA+ sup 99.0 5.6E-09 1.2E-13 85.7 13.2 175 54-232 83-319 (344)
243 COG1219 ClpX ATP-dependent pro 99.0 1E-08 2.2E-13 84.9 14.3 167 75-247 98-364 (408)
244 COG3267 ExeA Type II secretory 99.0 5E-08 1.1E-12 78.6 17.6 185 58-245 36-248 (269)
245 COG1220 HslU ATP-dependent pro 99.0 1.9E-08 4.1E-13 83.9 15.2 133 140-272 249-441 (444)
246 PF14516 AAA_35: AAA-like doma 99.0 3E-07 6.5E-12 79.7 23.3 231 55-294 13-290 (331)
247 PRK06921 hypothetical protein; 99.0 3.5E-09 7.6E-14 88.6 10.6 100 74-181 117-225 (266)
248 COG1239 ChlI Mg-chelatase subu 99.0 2.6E-08 5.5E-13 86.0 15.8 163 51-214 15-233 (423)
249 PF12774 AAA_6: Hydrolytic ATP 99.0 6.6E-08 1.4E-12 78.9 17.5 125 77-219 35-183 (231)
250 smart00763 AAA_PrkA PrkA AAA d 99.0 2.5E-08 5.4E-13 85.5 15.3 92 139-230 234-347 (361)
251 PF01695 IstB_IS21: IstB-like 99.0 1.6E-09 3.4E-14 85.2 6.9 98 73-181 46-150 (178)
252 KOG0745 Putative ATP-dependent 99.0 2.8E-08 6E-13 85.5 14.7 170 75-250 227-508 (564)
253 PLN03210 Resistant to P. syrin 99.0 2.3E-08 5E-13 100.3 16.8 191 49-243 180-396 (1153)
254 COG2909 MalT ATP-dependent tra 99.0 1.2E-07 2.5E-12 88.2 19.4 186 47-239 13-230 (894)
255 PTZ00111 DNA replication licen 99.0 3.6E-08 7.9E-13 93.4 16.5 144 54-203 451-647 (915)
256 KOG0741 AAA+-type ATPase [Post 99.0 2.5E-09 5.4E-14 93.9 8.1 167 77-248 259-456 (744)
257 PF06144 DNA_pol3_delta: DNA p 98.9 1.4E-08 3.1E-13 79.7 11.4 162 77-247 1-171 (172)
258 KOG0736 Peroxisome assembly fa 98.9 1.3E-07 2.8E-12 86.9 18.6 167 56-234 404-596 (953)
259 PRK08939 primosomal protein Dn 98.9 5.3E-09 1.1E-13 89.1 9.4 129 47-181 121-261 (306)
260 PRK06835 DNA replication prote 98.9 2.1E-08 4.5E-13 86.2 12.7 133 61-201 168-318 (329)
261 PF13401 AAA_22: AAA domain; P 98.9 3.8E-09 8.1E-14 79.0 7.0 104 75-180 5-125 (131)
262 smart00382 AAA ATPases associa 98.9 3.7E-08 8.1E-13 74.2 12.5 95 75-180 3-125 (148)
263 PRK09862 putative ATP-dependen 98.9 5.9E-08 1.3E-12 87.6 15.2 149 50-202 188-390 (506)
264 PRK13406 bchD magnesium chelat 98.9 1E-07 2.2E-12 87.9 16.7 187 73-262 24-247 (584)
265 PF12775 AAA_7: P-loop contain 98.9 7.9E-09 1.7E-13 86.7 8.8 139 75-215 34-195 (272)
266 COG0606 Predicted ATPase with 98.9 1.1E-08 2.4E-13 89.4 9.7 116 50-168 176-310 (490)
267 COG1484 DnaC DNA replication p 98.8 1.4E-08 2.9E-13 84.4 8.5 119 59-182 89-210 (254)
268 PRK09183 transposase/IS protei 98.8 2.8E-08 6E-13 83.0 10.1 100 74-181 102-206 (259)
269 PF13191 AAA_16: AAA ATPase do 98.8 1.1E-08 2.5E-13 81.1 6.8 48 54-101 1-51 (185)
270 KOG0741 AAA+-type ATPase [Post 98.8 3.8E-07 8.3E-12 80.5 15.1 154 76-248 540-721 (744)
271 PF07693 KAP_NTPase: KAP famil 98.8 2.2E-06 4.8E-11 74.4 20.1 77 140-216 171-266 (325)
272 COG3284 AcoR Transcriptional a 98.7 7.9E-07 1.7E-11 80.4 17.1 169 77-250 339-540 (606)
273 KOG1051 Chaperone HSP104 and r 98.7 1.4E-07 3.1E-12 89.3 12.3 116 53-179 562-709 (898)
274 PF10443 RNA12: RNA12 protein; 98.7 2.7E-06 5.9E-11 74.2 18.5 74 142-216 149-232 (431)
275 COG4650 RtcR Sigma54-dependent 98.7 5.2E-07 1.1E-11 74.2 12.9 234 61-296 196-476 (531)
276 COG1618 Predicted nucleotide k 98.7 5.7E-07 1.2E-11 67.4 11.8 27 76-102 7-33 (179)
277 PHA00729 NTP-binding motif con 98.6 3.1E-07 6.6E-12 74.0 9.5 121 69-211 12-138 (226)
278 PF13604 AAA_30: AAA domain; P 98.6 5.9E-07 1.3E-11 71.9 10.2 114 62-181 7-131 (196)
279 KOG2228 Origin recognition com 98.6 1.5E-06 3.1E-11 72.9 12.5 160 54-213 25-219 (408)
280 KOG0478 DNA replication licens 98.6 1.6E-06 3.5E-11 78.8 13.6 143 54-203 430-616 (804)
281 PHA02774 E1; Provisional 98.5 2.9E-06 6.2E-11 76.9 13.7 138 60-219 419-587 (613)
282 COG1373 Predicted ATPase (AAA+ 98.5 4E-05 8.7E-10 68.1 20.6 133 60-207 24-161 (398)
283 PRK10536 hypothetical protein; 98.5 5.2E-06 1.1E-10 68.1 13.3 121 53-180 55-212 (262)
284 COG1241 MCM2 Predicted ATPase 98.5 1.3E-06 2.8E-11 81.0 10.9 109 54-168 287-410 (682)
285 KOG0482 DNA replication licens 98.4 7E-06 1.5E-10 72.4 13.1 202 54-262 343-635 (721)
286 PRK04296 thymidine kinase; Pro 98.4 3.3E-06 7.2E-11 67.2 10.2 94 77-179 5-114 (190)
287 KOG2543 Origin recognition com 98.4 2.8E-05 6E-10 66.5 15.7 197 53-257 6-247 (438)
288 COG3899 Predicted ATPase [Gene 98.4 3.4E-05 7.3E-10 74.9 18.5 191 55-248 2-266 (849)
289 KOG0480 DNA replication licens 98.4 2.9E-06 6.3E-11 76.6 10.2 110 53-168 345-469 (764)
290 PF03266 NTPase_1: NTPase; In 98.4 5.5E-07 1.2E-11 70.0 5.0 62 141-205 95-163 (168)
291 PRK04132 replication factor C 98.4 3.3E-07 7.1E-12 87.3 4.3 50 40-89 6-55 (846)
292 PF00910 RNA_helicase: RNA hel 98.3 1E-06 2.2E-11 63.2 5.1 72 77-167 1-79 (107)
293 KOG4658 Apoptotic ATPase [Sign 98.3 1.4E-05 3E-10 77.5 13.7 184 56-246 161-366 (889)
294 PTZ00202 tuzin; Provisional 98.3 6.5E-05 1.4E-09 66.1 16.2 51 48-98 257-310 (550)
295 PHA02624 large T antigen; Prov 98.3 6.2E-06 1.4E-10 75.1 10.2 118 61-199 417-561 (647)
296 COG2884 FtsE Predicted ATPase 98.3 1.8E-05 3.8E-10 61.3 10.9 57 140-196 154-211 (223)
297 PF12780 AAA_8: P-loop contain 98.3 4E-05 8.8E-10 64.1 14.1 167 54-230 9-226 (268)
298 PF06309 Torsin: Torsin; Inte 98.3 5E-06 1.1E-10 60.3 7.5 60 53-112 25-91 (127)
299 PF03969 AFG1_ATPase: AFG1-lik 98.2 5.9E-06 1.3E-10 72.1 9.2 121 73-200 61-201 (362)
300 PF10236 DAP3: Mitochondrial r 98.2 7.3E-05 1.6E-09 64.2 14.7 48 194-241 258-308 (309)
301 COG5271 MDN1 AAA ATPase contai 98.2 0.00011 2.4E-09 73.5 17.0 153 76-241 890-1071(4600)
302 COG1419 FlhF Flagellar GTP-bin 98.2 3.2E-05 6.9E-10 67.2 12.1 117 74-191 203-334 (407)
303 PF02562 PhoH: PhoH-like prote 98.2 7.5E-06 1.6E-10 65.3 7.7 103 75-180 20-155 (205)
304 PF00448 SRP54: SRP54-type pro 98.2 2.3E-05 5.1E-10 62.5 10.2 93 76-169 3-113 (196)
305 cd01120 RecA-like_NTPases RecA 98.1 2.9E-05 6.2E-10 60.0 10.3 25 77-101 2-26 (165)
306 PF09848 DUF2075: Uncharacteri 98.1 4.5E-06 9.7E-11 73.3 6.2 89 76-167 3-117 (352)
307 PF04665 Pox_A32: Poxvirus A32 98.1 0.00032 6.9E-09 57.4 16.3 132 76-212 15-169 (241)
308 COG1119 ModF ABC-type molybden 98.1 3.8E-05 8.3E-10 61.9 10.3 53 140-192 188-244 (257)
309 PRK14974 cell division protein 98.1 4.3E-05 9.3E-10 66.0 11.4 98 76-174 142-257 (336)
310 COG5271 MDN1 AAA ATPase contai 98.1 4.8E-05 1E-09 75.9 12.6 152 64-230 1535-1716(4600)
311 cd03216 ABC_Carb_Monos_I This 98.1 1E-05 2.3E-10 62.8 6.8 106 74-182 26-143 (163)
312 KOG0477 DNA replication licens 98.1 1.3E-05 2.9E-10 72.3 7.8 134 54-194 450-625 (854)
313 PF10923 DUF2791: P-loop Domai 98.1 0.0011 2.4E-08 58.6 19.5 57 55-111 27-86 (416)
314 TIGR02768 TraA_Ti Ti-type conj 98.1 5.6E-05 1.2E-09 72.5 12.3 115 59-180 355-476 (744)
315 TIGR01447 recD exodeoxyribonuc 98.0 2.7E-05 5.8E-10 72.4 9.7 103 75-180 161-295 (586)
316 PRK10875 recD exonuclease V su 98.0 4.1E-05 8.9E-10 71.4 10.9 102 76-180 169-301 (615)
317 cd01128 rho_factor Transcripti 98.0 1.5E-05 3.2E-10 66.0 7.1 30 72-101 14-43 (249)
318 COG1126 GlnQ ABC-type polar am 98.0 6.9E-05 1.5E-09 59.4 10.0 52 140-191 153-205 (240)
319 PRK12723 flagellar biosynthesi 98.0 5.4E-05 1.2E-09 66.6 10.4 90 75-168 175-283 (388)
320 TIGR02858 spore_III_AA stage I 98.0 8.1E-05 1.8E-09 62.4 10.9 34 66-99 103-136 (270)
321 PF00493 MCM: MCM2/3/5 family 98.0 8.4E-07 1.8E-11 76.9 -1.3 144 54-203 25-211 (331)
322 cd00561 CobA_CobO_BtuR ATP:cor 98.0 5.4E-05 1.2E-09 57.9 8.6 102 76-182 4-139 (159)
323 PRK13695 putative NTPase; Prov 98.0 0.00027 5.9E-09 55.4 12.9 69 141-212 96-171 (174)
324 PRK00771 signal recognition pa 98.0 0.00013 2.9E-09 65.2 12.2 38 76-113 97-134 (437)
325 cd03222 ABC_RNaseL_inhibitor T 98.0 0.00017 3.6E-09 56.6 11.4 100 74-181 25-132 (177)
326 COG4088 Predicted nucleotide k 98.0 8.6E-05 1.9E-09 58.3 9.4 34 75-108 2-35 (261)
327 TIGR01448 recD_rel helicase, p 98.0 0.00012 2.7E-09 69.9 12.6 101 76-180 340-452 (720)
328 PF05970 PIF1: PIF1-like helic 97.9 6.3E-05 1.4E-09 66.2 9.7 43 58-100 6-48 (364)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 0.00016 3.4E-09 54.9 10.7 95 75-182 27-128 (144)
330 KOG0481 DNA replication licens 97.9 0.00013 2.9E-09 64.6 11.4 108 54-168 332-455 (729)
331 TIGR02688 conserved hypothetic 97.9 6.7E-05 1.5E-09 65.8 9.6 88 75-179 210-311 (449)
332 PRK08118 topology modulation p 97.9 0.00016 3.4E-09 56.3 10.8 24 75-98 2-25 (167)
333 PRK09376 rho transcription ter 97.9 2.3E-05 5.1E-10 68.1 6.4 31 72-102 167-197 (416)
334 cd01124 KaiC KaiC is a circadi 97.9 6E-05 1.3E-09 59.8 8.3 34 77-110 2-35 (187)
335 PRK11889 flhF flagellar biosyn 97.9 0.00017 3.8E-09 62.9 11.4 39 75-113 242-280 (436)
336 COG1485 Predicted ATPase [Gene 97.9 0.00014 3.1E-09 61.8 10.7 98 75-178 66-167 (367)
337 PRK13889 conjugal transfer rel 97.9 0.00013 2.9E-09 71.2 11.9 114 60-180 350-470 (988)
338 COG1125 OpuBA ABC-type proline 97.9 0.00013 2.8E-09 59.2 9.9 23 76-98 29-51 (309)
339 PF04851 ResIII: Type III rest 97.9 0.0001 2.2E-09 58.1 9.4 44 57-100 7-51 (184)
340 PRK06067 flagellar accessory p 97.9 0.00026 5.7E-09 58.4 11.9 46 64-109 13-60 (234)
341 COG4619 ABC-type uncharacteriz 97.9 0.00028 6.1E-09 53.7 10.7 24 75-98 30-53 (223)
342 PRK05703 flhF flagellar biosyn 97.9 0.00033 7.1E-09 62.8 13.0 87 76-166 223-326 (424)
343 cd03214 ABC_Iron-Siderophores_ 97.9 0.00014 3.1E-09 57.4 9.6 105 75-182 26-159 (180)
344 cd03213 ABCG_EPDR ABCG transpo 97.8 0.00017 3.7E-09 57.7 9.8 52 140-191 128-181 (194)
345 PF13207 AAA_17: AAA domain; P 97.8 2E-05 4.3E-10 57.9 4.1 22 77-98 2-23 (121)
346 cd00267 ABC_ATPase ABC (ATP-bi 97.8 0.00025 5.4E-09 54.6 10.4 105 75-182 26-141 (157)
347 TIGR00767 rho transcription te 97.8 6.7E-05 1.5E-09 65.6 7.8 30 72-101 166-195 (415)
348 cd03228 ABCC_MRP_Like The MRP 97.8 0.00022 4.9E-09 55.8 10.2 45 140-184 113-158 (171)
349 PRK15455 PrkA family serine pr 97.8 2.9E-05 6.3E-10 70.6 5.5 51 50-100 73-129 (644)
350 cd03230 ABC_DR_subfamily_A Thi 97.8 7.5E-05 1.6E-09 58.6 7.2 43 140-182 112-156 (173)
351 KOG1051 Chaperone HSP104 and r 97.8 0.00016 3.5E-09 69.2 10.5 160 52-215 185-365 (898)
352 cd03247 ABCC_cytochrome_bd The 97.8 0.00016 3.5E-09 56.9 9.1 45 140-184 115-160 (178)
353 cd03246 ABCC_Protease_Secretio 97.8 7.7E-05 1.7E-09 58.5 7.2 43 140-182 113-157 (173)
354 cd00046 DEXDc DEAD-like helica 97.8 0.00011 2.4E-09 54.8 7.7 25 76-100 2-26 (144)
355 COG1116 TauB ABC-type nitrate/ 97.8 0.00025 5.5E-09 57.6 9.8 25 75-99 30-54 (248)
356 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00028 6.2E-09 54.9 9.8 105 75-182 28-149 (166)
357 PF13245 AAA_19: Part of AAA d 97.8 0.00012 2.6E-09 48.7 6.4 25 75-99 11-35 (76)
358 PF00519 PPV_E1_C: Papillomavi 97.8 9.2E-05 2E-09 63.8 7.2 135 60-217 247-413 (432)
359 PRK08533 flagellar accessory p 97.8 0.00023 5E-09 58.5 9.4 30 76-105 26-55 (230)
360 TIGR00708 cobA cob(I)alamin ad 97.8 0.00047 1E-08 53.4 10.5 102 76-182 7-141 (173)
361 PRK12608 transcription termina 97.7 0.00014 3E-09 63.2 8.2 31 72-102 131-161 (380)
362 PRK13539 cytochrome c biogenes 97.7 0.00026 5.6E-09 57.3 9.5 58 140-202 144-203 (207)
363 cd03215 ABC_Carb_Monos_II This 97.7 0.00011 2.3E-09 58.2 6.9 42 140-181 121-164 (182)
364 COG1136 SalX ABC-type antimicr 97.7 0.00088 1.9E-08 54.2 12.1 41 140-180 159-202 (226)
365 COG1131 CcmA ABC-type multidru 97.7 0.00014 3E-09 62.0 8.0 52 140-191 153-206 (293)
366 smart00487 DEXDc DEAD-like hel 97.7 0.00029 6.3E-09 55.9 9.6 38 142-179 130-168 (201)
367 KOG3347 Predicted nucleotide k 97.7 0.00021 4.5E-09 53.1 7.7 26 73-98 6-31 (176)
368 COG4555 NatA ABC-type Na+ tran 97.7 0.00032 7E-09 55.0 9.1 55 140-194 150-205 (245)
369 PRK13826 Dtr system oriT relax 97.7 0.0004 8.7E-09 68.5 11.9 101 75-180 398-505 (1102)
370 cd03229 ABC_Class3 This class 97.7 0.00014 3.1E-09 57.3 7.3 43 140-182 117-162 (178)
371 COG4178 ABC-type uncharacteriz 97.7 0.00018 3.9E-09 66.0 8.8 41 140-180 532-573 (604)
372 PRK14737 gmk guanylate kinase; 97.7 0.0013 2.7E-08 52.2 12.6 24 75-98 5-28 (186)
373 cd01131 PilT Pilus retraction 97.7 0.00054 1.2E-08 55.0 10.6 25 76-100 3-27 (198)
374 PRK14722 flhF flagellar biosyn 97.7 0.00039 8.5E-09 60.8 10.4 25 75-99 138-162 (374)
375 PRK05986 cob(I)alamin adenolsy 97.7 0.00022 4.9E-09 56.0 8.0 103 75-182 23-159 (191)
376 COG2804 PulE Type II secretory 97.7 0.0003 6.5E-09 62.8 9.5 54 49-103 234-287 (500)
377 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.0003 6.6E-09 58.9 9.2 35 77-111 39-73 (259)
378 COG3854 SpoIIIAA ncharacterize 97.7 0.00094 2E-08 53.5 11.2 31 69-99 132-162 (308)
379 cd03268 ABC_BcrA_bacitracin_re 97.7 0.00034 7.3E-09 56.6 9.2 43 140-182 143-187 (208)
380 PRK13537 nodulation ABC transp 97.7 0.00055 1.2E-08 58.9 10.8 43 140-182 155-199 (306)
381 cd03115 SRP The signal recogni 97.7 0.00039 8.5E-09 54.5 9.1 34 77-110 3-36 (173)
382 cd03232 ABC_PDR_domain2 The pl 97.7 0.00037 8.1E-09 55.6 9.1 43 140-182 125-169 (192)
383 PF00437 T2SE: Type II/IV secr 97.7 0.00013 2.9E-09 61.6 6.8 51 51-101 102-154 (270)
384 cd03283 ABC_MutS-like MutS-lik 97.7 0.00071 1.5E-08 54.3 10.6 24 75-98 26-49 (199)
385 PRK09361 radB DNA repair and r 97.7 0.00044 9.5E-09 56.7 9.6 47 64-110 11-59 (225)
386 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 0.0007 1.5E-08 53.5 10.5 22 77-98 2-23 (183)
387 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00092 2E-08 54.2 11.2 22 75-96 30-51 (213)
388 TIGR01188 drrA daunorubicin re 97.6 0.00034 7.4E-09 60.1 8.9 43 140-182 141-185 (302)
389 PRK13536 nodulation factor exp 97.6 0.00077 1.7E-08 58.8 11.2 43 140-182 189-233 (340)
390 PF01443 Viral_helicase1: Vira 97.6 0.00012 2.6E-09 60.4 5.8 21 77-97 1-21 (234)
391 TIGR03574 selen_PSTK L-seryl-t 97.6 0.00025 5.5E-09 59.1 7.8 27 77-103 2-28 (249)
392 cd03269 ABC_putative_ATPase Th 97.6 0.00067 1.5E-08 55.0 9.9 43 140-182 145-189 (210)
393 TIGR00960 3a0501s02 Type II (G 97.6 0.00033 7.1E-09 57.1 8.0 43 140-182 155-199 (216)
394 cd03218 ABC_YhbG The ABC trans 97.6 0.00023 5E-09 58.7 7.2 43 140-182 150-194 (232)
395 cd01394 radB RadB. The archaea 97.6 0.0012 2.5E-08 53.9 11.3 46 63-108 6-53 (218)
396 cd03264 ABC_drug_resistance_li 97.6 0.0003 6.5E-09 57.1 7.7 43 140-182 147-190 (211)
397 COG2842 Uncharacterized ATPase 97.6 0.0017 3.7E-08 54.1 11.9 186 51-248 70-277 (297)
398 COG1124 DppF ABC-type dipeptid 97.6 0.00077 1.7E-08 54.5 9.6 51 140-191 158-211 (252)
399 PRK07261 topology modulation p 97.6 0.0011 2.4E-08 51.8 10.5 23 76-98 2-24 (171)
400 PRK12726 flagellar biosynthesi 97.6 0.0011 2.4E-08 57.7 11.3 39 76-114 208-246 (407)
401 cd03238 ABC_UvrA The excision 97.6 0.0014 3E-08 51.5 11.0 41 142-182 108-150 (176)
402 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00043 9.3E-09 58.1 8.7 49 51-100 58-106 (264)
403 PRK06762 hypothetical protein; 97.6 0.0029 6.2E-08 49.1 12.9 23 76-98 4-26 (166)
404 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00076 1.7E-08 55.7 10.0 47 64-110 9-57 (237)
405 TIGR01425 SRP54_euk signal rec 97.6 0.00056 1.2E-08 60.8 9.6 37 76-112 102-138 (429)
406 TIGR02237 recomb_radB DNA repa 97.6 0.00057 1.2E-08 55.3 9.1 35 77-113 15-49 (209)
407 PRK13900 type IV secretion sys 97.6 0.0069 1.5E-07 52.5 16.2 25 75-99 161-185 (332)
408 cd01121 Sms Sms (bacterial rad 97.6 0.00055 1.2E-08 60.2 9.5 40 63-102 69-110 (372)
409 PF05707 Zot: Zonular occluden 97.6 7.2E-05 1.6E-09 59.8 3.6 52 141-192 79-137 (193)
410 TIGR03499 FlhF flagellar biosy 97.6 0.00024 5.2E-09 60.3 7.0 37 76-112 196-234 (282)
411 cd03224 ABC_TM1139_LivF_branch 97.6 0.0003 6.5E-09 57.5 7.4 42 140-181 149-192 (222)
412 cd03292 ABC_FtsE_transporter F 97.6 0.00099 2.1E-08 54.1 10.4 42 140-181 153-196 (214)
413 PRK14532 adenylate kinase; Pro 97.6 0.0037 7.9E-08 49.7 13.4 23 76-98 2-24 (188)
414 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.6 0.00099 2.1E-08 54.6 10.4 43 140-182 159-203 (224)
415 cd03217 ABC_FeS_Assembly ABC-t 97.6 0.00027 5.9E-09 56.8 6.9 43 140-182 121-165 (200)
416 PRK13709 conjugal transfer nic 97.5 0.0019 4.1E-08 66.8 14.2 118 59-180 970-1099(1747)
417 TIGR03410 urea_trans_UrtE urea 97.5 0.00042 9E-09 57.0 8.1 43 140-182 148-193 (230)
418 TIGR01420 pilT_fam pilus retra 97.5 0.0017 3.6E-08 56.8 12.2 26 75-100 123-148 (343)
419 PRK11823 DNA repair protein Ra 97.5 0.00057 1.2E-08 61.7 9.6 41 62-102 66-108 (446)
420 cd03266 ABC_NatA_sodium_export 97.5 0.00047 1E-08 56.2 8.3 43 140-182 153-197 (218)
421 COG1117 PstB ABC-type phosphat 97.5 0.00024 5.2E-09 56.2 6.1 42 140-181 166-208 (253)
422 KOG2383 Predicted ATPase [Gene 97.5 0.00094 2E-08 57.7 10.2 25 74-98 114-138 (467)
423 TIGR00064 ftsY signal recognit 97.5 0.001 2.3E-08 56.0 10.5 37 76-112 74-110 (272)
424 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.0008 1.7E-08 55.3 9.4 46 139-184 155-202 (254)
425 TIGR02012 tigrfam_recA protein 97.5 0.0015 3.2E-08 56.1 11.3 39 64-102 42-83 (321)
426 PF05872 DUF853: Bacterial pro 97.5 0.00099 2.2E-08 58.7 10.3 67 140-206 254-328 (502)
427 COG1120 FepC ABC-type cobalami 97.5 0.00043 9.4E-09 57.1 7.7 42 140-181 155-199 (258)
428 TIGR02673 FtsE cell division A 97.5 0.0012 2.5E-08 53.7 10.3 42 140-181 154-197 (214)
429 cd03262 ABC_HisP_GlnQ_permease 97.5 0.00057 1.2E-08 55.5 8.5 43 140-182 152-196 (213)
430 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.0011 2.3E-08 54.1 10.0 44 140-183 157-203 (218)
431 KOG0479 DNA replication licens 97.5 0.0014 3E-08 59.3 11.1 143 54-203 302-488 (818)
432 KOG3928 Mitochondrial ribosome 97.5 0.0068 1.5E-07 52.8 14.9 52 192-243 403-457 (461)
433 PRK06696 uridine kinase; Valid 97.5 0.00022 4.7E-09 58.4 5.9 45 58-102 3-50 (223)
434 cd03263 ABC_subfamily_A The AB 97.5 0.0006 1.3E-08 55.7 8.4 43 140-182 150-193 (220)
435 TIGR02868 CydC thiol reductant 97.5 0.00029 6.4E-09 65.5 7.4 40 140-179 487-527 (529)
436 TIGR02525 plasmid_TraJ plasmid 97.5 0.0026 5.7E-08 55.8 12.8 25 76-100 151-175 (372)
437 cd03225 ABC_cobalt_CbiO_domain 97.5 0.0014 3.1E-08 53.1 10.4 43 140-182 151-195 (211)
438 COG1066 Sms Predicted ATP-depe 97.5 0.0024 5.1E-08 55.7 11.9 50 62-114 79-130 (456)
439 PRK12724 flagellar biosynthesi 97.5 0.00099 2.1E-08 58.9 9.9 87 77-167 226-327 (432)
440 TIGR01618 phage_P_loop phage n 97.5 2.3E-05 4.9E-10 63.4 -0.2 22 75-96 13-34 (220)
441 PRK14712 conjugal transfer nic 97.5 0.0028 6E-08 64.9 14.2 118 59-180 838-967 (1623)
442 COG1100 GTPase SAR1 and relate 97.5 0.0021 4.7E-08 52.2 11.5 101 76-184 7-124 (219)
443 PF05272 VirE: Virulence-assoc 97.5 0.0016 3.4E-08 52.1 10.2 99 77-199 55-169 (198)
444 TIGR01288 nodI ATP-binding ABC 97.5 0.0014 3E-08 56.3 10.7 43 140-182 152-196 (303)
445 cd03233 ABC_PDR_domain1 The pl 97.5 0.0005 1.1E-08 55.3 7.5 42 140-181 135-179 (202)
446 PRK12727 flagellar biosynthesi 97.5 0.0032 6.9E-08 57.3 13.1 26 75-100 351-376 (559)
447 PRK04328 hypothetical protein; 97.5 0.0016 3.5E-08 54.2 10.6 47 64-110 11-59 (249)
448 PRK06547 hypothetical protein; 97.5 0.00029 6.2E-09 55.1 5.8 30 69-98 10-39 (172)
449 cd03258 ABC_MetN_methionine_tr 97.5 0.00059 1.3E-08 56.3 8.0 43 140-182 157-202 (233)
450 PRK00091 miaA tRNA delta(2)-is 97.5 0.0011 2.3E-08 56.8 9.6 24 75-98 5-28 (307)
451 cd03265 ABC_DrrA DrrA is the A 97.5 0.00057 1.2E-08 55.8 7.8 43 140-182 148-193 (220)
452 PRK10908 cell division protein 97.5 0.00066 1.4E-08 55.5 8.1 43 140-182 154-198 (222)
453 TIGR02782 TrbB_P P-type conjug 97.5 0.0013 2.7E-08 56.3 10.0 48 51-100 107-158 (299)
454 cd03301 ABC_MalK_N The N-termi 97.5 0.0012 2.7E-08 53.5 9.6 42 140-181 147-191 (213)
455 PF13671 AAA_33: AAA domain; P 97.5 9.2E-05 2E-09 56.0 2.8 22 77-98 2-23 (143)
456 PRK10895 lipopolysaccharide AB 97.5 0.00054 1.2E-08 56.8 7.7 43 140-182 154-198 (241)
457 PRK10867 signal recognition pa 97.4 0.0015 3.3E-08 58.4 10.8 37 77-113 103-140 (433)
458 PF13086 AAA_11: AAA domain; P 97.4 0.0003 6.5E-09 57.7 6.1 35 62-98 7-41 (236)
459 PRK13543 cytochrome c biogenes 97.4 0.0018 3.9E-08 52.7 10.5 43 140-182 154-198 (214)
460 cd02019 NK Nucleoside/nucleoti 97.4 0.00026 5.7E-09 46.2 4.5 22 77-98 2-23 (69)
461 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0057 1.2E-07 55.8 14.4 118 142-260 82-203 (489)
462 cd03226 ABC_cobalt_CbiO_domain 97.4 0.00096 2.1E-08 53.8 8.7 43 140-182 143-187 (205)
463 COG0529 CysC Adenylylsulfate k 97.4 0.00025 5.5E-09 54.3 4.8 41 66-106 15-55 (197)
464 PRK00131 aroK shikimate kinase 97.4 0.00022 4.7E-09 55.9 4.7 25 74-98 4-28 (175)
465 cd03259 ABC_Carb_Solutes_like 97.4 0.00043 9.4E-09 56.2 6.6 43 140-182 147-192 (213)
466 PF08433 KTI12: Chromatin asso 97.4 0.0003 6.5E-09 59.0 5.7 88 75-169 2-97 (270)
467 PRK13540 cytochrome c biogenes 97.4 0.0016 3.4E-08 52.4 9.7 42 140-181 144-187 (200)
468 cd04124 RabL2 RabL2 subfamily. 97.4 0.002 4.4E-08 49.7 10.0 21 77-97 3-23 (161)
469 cd03293 ABC_NrtD_SsuB_transpor 97.4 0.0015 3.3E-08 53.3 9.8 43 140-182 148-193 (220)
470 TIGR02655 circ_KaiC circadian 97.4 0.0014 2.9E-08 60.2 10.3 47 63-109 250-298 (484)
471 TIGR03740 galliderm_ABC gallid 97.4 0.0015 3.3E-08 53.4 9.8 43 140-182 141-185 (223)
472 PRK06731 flhF flagellar biosyn 97.4 0.0039 8.4E-08 52.3 12.2 91 75-169 76-184 (270)
473 PF08303 tRNA_lig_kinase: tRNA 97.4 0.0089 1.9E-07 45.6 12.8 123 80-216 5-146 (168)
474 COG1875 NYN ribonuclease and A 97.4 0.0037 8E-08 53.6 11.9 44 134-180 344-387 (436)
475 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.0026 5.6E-08 52.9 11.0 82 140-222 132-222 (246)
476 TIGR00174 miaA tRNA isopenteny 97.4 0.0022 4.8E-08 54.1 10.6 22 77-98 2-23 (287)
477 TIGR03522 GldA_ABC_ATP gliding 97.4 0.00086 1.9E-08 57.6 8.3 52 140-192 150-202 (301)
478 cd00983 recA RecA is a bacter 97.4 0.0018 3.9E-08 55.6 10.0 39 64-102 42-83 (325)
479 PRK11174 cysteine/glutathione 97.4 0.00069 1.5E-08 63.9 8.3 42 140-181 502-544 (588)
480 COG2274 SunT ABC-type bacterio 97.4 0.0005 1.1E-08 65.3 7.2 42 140-181 626-668 (709)
481 PRK11614 livF leucine/isoleuci 97.4 0.00061 1.3E-08 56.3 7.0 43 140-182 154-198 (237)
482 PRK11124 artP arginine transpo 97.4 0.0009 2E-08 55.5 8.0 43 140-182 158-202 (242)
483 PRK09354 recA recombinase A; P 97.4 0.0021 4.5E-08 55.7 10.4 39 64-102 47-88 (349)
484 PRK13764 ATPase; Provisional 97.4 0.00074 1.6E-08 62.6 8.1 27 75-101 258-284 (602)
485 PRK13833 conjugal transfer pro 97.4 0.0017 3.7E-08 55.8 9.8 39 59-99 131-169 (323)
486 PRK09493 glnQ glutamine ABC tr 97.4 0.00097 2.1E-08 55.3 8.1 44 140-183 153-198 (240)
487 TIGR01277 thiQ thiamine ABC tr 97.4 0.00069 1.5E-08 55.0 7.0 43 140-182 145-190 (213)
488 TIGR03864 PQQ_ABC_ATP ABC tran 97.4 0.0023 4.9E-08 52.9 10.2 45 140-184 149-196 (236)
489 PRK13541 cytochrome c biogenes 97.3 0.0021 4.5E-08 51.4 9.6 43 140-182 140-184 (195)
490 PF00270 DEAD: DEAD/DEAH box h 97.3 0.0034 7.3E-08 48.7 10.6 21 75-95 15-35 (169)
491 PRK13546 teichoic acids export 97.3 0.0021 4.6E-08 54.0 10.0 43 140-182 160-204 (264)
492 COG4525 TauB ABC-type taurine 97.3 0.0022 4.7E-08 50.3 9.0 24 75-98 32-55 (259)
493 PRK11248 tauB taurine transpor 97.3 0.0021 4.5E-08 53.8 9.9 43 140-182 145-190 (255)
494 PRK07667 uridine kinase; Provi 97.3 0.00057 1.2E-08 54.6 6.2 35 77-111 20-54 (193)
495 cd03261 ABC_Org_Solvent_Resist 97.3 0.0008 1.7E-08 55.6 7.3 43 140-182 153-198 (235)
496 PRK13650 cbiO cobalt transport 97.3 0.0026 5.7E-08 53.9 10.6 45 140-184 157-204 (279)
497 PRK05973 replicative DNA helic 97.3 0.0038 8.3E-08 51.2 11.1 35 77-111 67-101 (237)
498 cd03298 ABC_ThiQ_thiamine_tran 97.3 0.00078 1.7E-08 54.6 7.1 43 140-182 145-190 (211)
499 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.2E-09 53.0 3.3 22 77-98 1-22 (129)
500 TIGR03608 L_ocin_972_ABC putat 97.3 0.00064 1.4E-08 54.9 6.6 43 140-182 151-195 (206)
No 1
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-40 Score=269.29 Aligned_cols=265 Identities=37% Similarity=0.615 Sum_probs=236.5
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCC-CCcccEEEeecCCCcC
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRG 117 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 117 (305)
....|.++|+|++|++++||+..++.|.+.+.++..|+++||||||||||+++.++++++.++ -.+..+...+.+...+
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 556699999999999999999999999999999889999999999999999999999999883 4556677788888888
Q ss_pred hhHHHHHHHHhhhcccc----cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhccee
Q 021937 118 IDVVRQQIQDFASTQSF----SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~----~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~ 193 (305)
....++.+..+...... ......+..|+||||+|.+..+.|++|.+.++..+.+++||++||..+.++..+.+||+
T Consensus 102 isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 88777777665543221 11223345999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccC-HHHHHhhhCCCChhhHHH
Q 021937 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT-EEAVYLCTGNPLPKDIEQ 272 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~ 272 (305)
.+.|+++..+.+...++.++.++|++++++++..|++.++||+|+|+..||+++...+.|+ .-.++.+.|...+..+..
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~ 261 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLD 261 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888899 556666667999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 273 ISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 273 l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
+++..+..|+.+.....+.+...+-.|+++.
T Consensus 262 lle~a~S~d~~~~v~~~Rei~~sg~~~~~lm 292 (346)
T KOG0989|consen 262 LLELALSADTPNTVKRVREIMRSGYSPLQLM 292 (346)
T ss_pred HHHHHHccChHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999999999999887777654
No 2
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=2.6e-39 Score=278.24 Aligned_cols=261 Identities=43% Similarity=0.671 Sum_probs=234.2
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhH
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
.||.++|+|++|++++|+++.++.|+.++..+..++++|+||||+|||++|+++++.+.+.++...+++++.++..+.+.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH
Confidence 37999999999999999999999999999999889999999999999999999999998777666788888887777777
Q ss_pred HHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCC
Q 021937 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL 200 (305)
Q Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~ 200 (305)
+++.+.......... ...+..+++|||+|.+....++.|+++++.++..++++++++....+.+++++||..+.|+++
T Consensus 81 vr~~i~~~~~~~~~~--~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 81 VRNKIKMFAQKKVTL--PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred HHHHHHHHHhccccC--CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 777776654432111 113478999999999999999999999999888899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHHHcc
Q 021937 201 EPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNE 280 (305)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~ 280 (305)
+.+++.+++..++.++|+.+++++++.+++.++||+|.+++.||.+....+.|+.++|.++.+......++.+++++..+
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~ 238 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKG 238 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999776665679999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 021937 281 SFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 281 ~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
|+++|+..++.|...+..+..++
T Consensus 239 ~~~~a~~~l~~ll~~g~~~~~Il 261 (319)
T PLN03025 239 KFDDACDGLKQLYDLGYSPTDII 261 (319)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999998877666554
No 3
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.8e-38 Score=274.35 Aligned_cols=258 Identities=19% Similarity=0.316 Sum_probs=226.7
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC---------------
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------------- 102 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~--------------- 102 (305)
...+|.++|||++|++++||+.++..|..++..++.+| ++|+||+|+||||+|+.+++.+.|..
T Consensus 4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 56789999999999999999999999999999998887 89999999999999999999998742
Q ss_pred ----CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021937 103 ----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
....+++++.....+.+.+++......... ...++.|+||||+|.++.+.++.|++.+++++.++.||+++
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p-----~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAP-----MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhh-----hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 122466777766666777777665543221 22347899999999999999999999999999999999999
Q ss_pred cCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHH
Q 021937 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEA 257 (305)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~ 257 (305)
+....+.+++++||+.+.|.+++.+++.+++.+++..+|+.++++++..|++.++|++|.+++.|+++.. ..+.|+.+.
T Consensus 159 te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~ 238 (484)
T PRK14956 159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVK 238 (484)
T ss_pred CChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999977554 445799999
Q ss_pred HHhhhCCCChhhHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHH
Q 021937 258 VYLCTGNPLPKDIEQISYWLLNESF-ADSFKRIQNLSFIIRLVLF 301 (305)
Q Consensus 258 v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~l~~~~~~~~~ 301 (305)
|.++++...+..++++++++.++|. .+++.+++.|...+..+.-
T Consensus 239 V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 239 IRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999875 6899999999988766543
No 4
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5e-37 Score=278.22 Aligned_cols=253 Identities=22% Similarity=0.327 Sum_probs=225.7
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+..|.+||||++|++++||+++++.|.+++.+++.+| ++|+||+|+||||+++.+++.+.|..
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 5679999999999999999999999999999998888 69999999999999999999998742
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....+++++..+..+.+.+++.+....... ...+++|+||||+|.|+...++.|++.||+++.+++||++|+
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P-----~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAP-----VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhcc-----ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 112477787777677888888776654322 233479999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh-hccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH-MASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v 258 (305)
+..++.+++++||+.+.|++++.+++.++|.+++..+++.++++.+..|++.++|++|.++++++++. ...+.|+.+.|
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V 237 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV 237 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986554 44567999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIR 297 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 297 (305)
+.+++......+..+++.+..+|+.+++..+++|.....
T Consensus 238 ~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 238 SGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSL 276 (830)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999987543
No 5
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.7e-37 Score=277.76 Aligned_cols=259 Identities=21% Similarity=0.308 Sum_probs=232.1
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+.+|.++|||++|++++||+++++.|.+++..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 5789999999999999999999999999999999888 79999999999999999999998742
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....+++++.+...+.+.+++.+....... ...+++|+||||+|.++....+.|++++++++.++.||++|+
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p-----~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP-----TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhcc-----ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 222478888777778888888776654322 234579999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
+..++++++.+||+.+.|++++..++.+++..++.++|+.++++++..|++.++|++|.+++.++++... .+.|+.++|
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V 237 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADV 237 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 9989999999999999999999999999999999999999999999999999999999999999766554 467999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
.++++......++.+++++..+|.++++..++.|...+..+..+|
T Consensus 238 ~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 238 KTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999999999999887765443
No 6
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.7e-37 Score=272.59 Aligned_cols=262 Identities=21% Similarity=0.322 Sum_probs=233.2
Q ss_pred CCCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-------------
Q 021937 37 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------- 102 (305)
Q Consensus 37 ~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------- 102 (305)
+..+.+|.++|+|++|++++||+..++.|...+..++.++ ++|+||+|+||||+|+.+++.+.|..
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 4567899999999999999999999999999988887665 89999999999999999999997742
Q ss_pred ----------CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCc
Q 021937 103 ----------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT 172 (305)
Q Consensus 103 ----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~ 172 (305)
....+++++.....+.+.+++.+...... ++. +++.|+||||+|.++...++.|++.+++++.++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~-P~~----~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK-PLQ----GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc-ccc----CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence 12356777776667788888877665433 322 347999999999999999999999999999999
Q ss_pred eEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc--
Q 021937 173 RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-- 250 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-- 250 (305)
.||++++...++++++.+||+.+.|++++.+++.+++..++.++|+.+++++++.|++.++|++|.+++.|++++...
T Consensus 160 vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~ 239 (507)
T PRK06645 160 IFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAK 239 (507)
T ss_pred EEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 999999988899999999999999999999999999999999999999999999999999999999999998886543
Q ss_pred --CccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 251 --QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 251 --~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
+.|+.++|+++++.....+++++++++..+|..+|+..++.+..++..+..++
T Consensus 240 ~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l 294 (507)
T PRK06645 240 SDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFI 294 (507)
T ss_pred CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 26999999999999999999999999999999999999999999988877653
No 7
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.1e-37 Score=270.96 Aligned_cols=253 Identities=23% Similarity=0.357 Sum_probs=228.4
Q ss_pred chhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC------------------
Q 021937 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------ 102 (305)
.|.++|||++|++++||+.+++.|.+.+..++.+| ++|+||+|+||||+|+.+++.++|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 58899999999999999999999999999988886 99999999999999999999887632
Q ss_pred -CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 103 -YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
....++++++++..+.+.+++.+...... ++. ++++|+||||+|.++...++.|+++++++++++.+|++++..
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~-P~~----~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYL-PIS----SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhc-ccc----CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 34567888888778888888877665433 332 348999999999999999999999999999999999999999
Q ss_pred cccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHHHh
Q 021937 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYL 260 (305)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~ 260 (305)
.++.+++++||+.+.|.+++.+++.+++..++.++|+.+++++++.|++.++|++|.+++.|++++.. .+.|+.++|++
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~ 236 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRD 236 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887764 45799999999
Q ss_pred hhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Q 021937 261 CTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVL 300 (305)
Q Consensus 261 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~ 300 (305)
+++......++++++++..+|..+|+..++.|.... .+.
T Consensus 237 llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~ 275 (491)
T PRK14964 237 LLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPV 275 (491)
T ss_pred HHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHH
Confidence 999999999999999999999999999999999864 443
No 8
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-37 Score=240.33 Aligned_cols=255 Identities=42% Similarity=0.684 Sum_probs=239.4
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
.+.+|.++|+|..+.+++|++..++.|.-....++.|++++.||||+||||.+.++++++....+.-.+.++|.++..++
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021937 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~ 198 (305)
+.++..++.+++..--. ..++..+||+||+|.+....|++|.+.++-++..++|.++||...++.+.+.+||..+.|.
T Consensus 93 DvVRn~IK~FAQ~kv~l--p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRys 170 (333)
T KOG0991|consen 93 DVVRNKIKMFAQKKVTL--PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYS 170 (333)
T ss_pred HHHHHHHHHHHHhhccC--CCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhc
Confidence 99999999887764311 2345789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHHH
Q 021937 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (305)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 278 (305)
.++..++...+...++.+++.++++.++.|.-.+.||.|+++|.||+...+.+.++.+.|.++........+..++....
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~ 250 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL 250 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHH
Q 021937 279 NESFADSFKRIQNLSFI 295 (305)
Q Consensus 279 ~~~~~~~~~~l~~l~~~ 295 (305)
.++++.|++.++.+=..
T Consensus 251 ~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 251 KRNIDEALKILAELWKL 267 (333)
T ss_pred hccHHHHHHHHHHHHHc
Confidence 99999999999987543
No 9
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3e-36 Score=268.36 Aligned_cols=258 Identities=24% Similarity=0.400 Sum_probs=225.9
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC----------------
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---------------- 103 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~---------------- 103 (305)
..|.++|||++|++++||++..+.|...+..+..++ ++|+||||+||||+|+.+++.+.+...
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 468899999999999999999999999999998877 899999999999999999999876321
Q ss_pred ---cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 104 ---HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
...++.++++...+.+.+++..... ...++ .+++.|++|||+|.+....++.|+..+++++.++.+|++++.
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~-~~~p~----~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAV-GYRPM----EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHH-hhChh----cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 2257777777666777777644433 32222 234789999999999999999999999999888888888887
Q ss_pred CcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc-CccCHHHHH
Q 021937 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVY 259 (305)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~ 259 (305)
+..+.+++.+||+.+.|.+++.+++..++...+..+++.+++++++.|++.++||+|.+++.|+.++... +.|+.++|+
T Consensus 157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~ 236 (472)
T PRK14962 157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVH 236 (472)
T ss_pred hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999876543 469999999
Q ss_pred hhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 260 LCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 260 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
++++......+++++++++++|.++|+.+++.|...+..+..++
T Consensus 237 ~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 237 EALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999887777653
No 10
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.1e-36 Score=271.49 Aligned_cols=256 Identities=23% Similarity=0.320 Sum_probs=227.2
Q ss_pred chhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC------------------
Q 021937 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------ 102 (305)
.|.++|||++|++++||+.+++.|.+++..++.+| ++|+||+|+||||+|+.+++.+.|..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 47799999999999999999999999999999999 79999999999999999999998632
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....++.++.+...+.+.+++........ ++ .+++.|+||||+|.++...++.|++.+++++.++.||++++
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~-P~----~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYA-PA----QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhh-hh----cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 12456777776666788887766554332 22 23479999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc--cCccCHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEEA 257 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--~~~i~~~~ 257 (305)
...++.+++++||+.+.|.+++.+++.+++..++.++|+.++++++..|++.++|++|.+++.|++++.. .+.|+.++
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~ 236 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQR 236 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988775 35799999
Q ss_pred HHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 258 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
+.++++......++.+++++..+|...++..++.+...++.+..+
T Consensus 237 v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~ 281 (584)
T PRK14952 237 ALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRF 281 (584)
T ss_pred HHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999999999999999999999998776665433
No 11
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.4e-36 Score=269.56 Aligned_cols=255 Identities=18% Similarity=0.289 Sum_probs=225.7
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+.+|.++|||++|++++|++...+.|.+++..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 4679999999999999999999999999999998877 79999999999999999999997632
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....++.++.+...+.+.+++.+....... ..++++|+||||+|.++....+.|++++++++.++.||++++
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P-----~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP-----TQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhh-----hcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 223567777776667788887776553322 123479999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v 258 (305)
....++..+++||..+.|.+++.+++.+++..++.++|+.++++++..|++.++|++|.+++.++++.. ..+.|+.++|
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV 236 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDV 236 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 988899999999999999999999999999999999999999999999999999999999999966554 4567999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLV 299 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 299 (305)
.++++......++++++++..++..+++..++.+...+..+
T Consensus 237 ~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~ 277 (702)
T PRK14960 237 KEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDV 277 (702)
T ss_pred HHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999998765543
No 12
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-36 Score=270.14 Aligned_cols=254 Identities=22% Similarity=0.329 Sum_probs=226.1
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+..|.++|+|++|++++||+++++.|.+.+..++.+| ++|+||+|+||||+++.+++.+.|.+
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 5779999999999999999999999999999999998 69999999999999999999998732
Q ss_pred --------CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceE
Q 021937 103 --------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (305)
Q Consensus 103 --------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~i 174 (305)
....+++++.....+.+.+++.+....... ...+++|+||||+|.|+....+.|++.||+++.++.|
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P-----~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F 157 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP-----TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch-----hcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence 112567777776677888888777654432 2234799999999999999999999999999999999
Q ss_pred EEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh-hccCcc
Q 021937 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH-MASQQI 253 (305)
Q Consensus 175 il~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i 253 (305)
|++|++..++.+++++||+.+.|++++.+++.+++.+++..+++.++++.+..|++.++|++|.++++++++. ...+.|
T Consensus 158 ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~I 237 (700)
T PRK12323 158 ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNV 237 (700)
T ss_pred EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996544 445679
Q ss_pred CHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Q 021937 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRL 298 (305)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 298 (305)
+.+.|.++++......+..+++.+..+|...++..++.+...+..
T Consensus 238 t~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d 282 (700)
T PRK12323 238 SEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLS 282 (700)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999888775544
No 13
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.3e-36 Score=271.74 Aligned_cols=258 Identities=25% Similarity=0.350 Sum_probs=229.1
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+..|.++|||++|++++||+..++.|.+++..++.+| ++|+||+|+||||+++.+++.++|.+
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 5679999999999999999999999999999999888 69999999999999999999998742
Q ss_pred --------CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceE
Q 021937 103 --------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (305)
Q Consensus 103 --------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~i 174 (305)
....+++++.....+.+.+++.+....... ...+++|+||||+|.++...++.|++.+++++.++.|
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p-----~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f 157 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP-----VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF 157 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc-----ccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence 122567777776677888888776643322 2234799999999999999999999999999999999
Q ss_pred EEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCcc
Q 021937 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQI 253 (305)
Q Consensus 175 il~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i 253 (305)
|++|++..++..++++||..++|++++.+++.+++..++.++|+.++++++..|++.++|++|.+++.++++.. ..+.|
T Consensus 158 IL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~I 237 (618)
T PRK14951 158 VLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQL 237 (618)
T ss_pred EEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999988999999999999999999999999999999999999999999999999999999999999976554 44679
Q ss_pred CHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 254 TEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
+.++|+++++......++.+++++..+|...++..++.|...+..+..+
T Consensus 238 t~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 238 QEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999999999998876665544
No 14
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.6e-36 Score=275.34 Aligned_cols=256 Identities=20% Similarity=0.305 Sum_probs=223.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+.+|.++|||++|++++||+.+++.|++++..++.+| ++|+||+|+|||++++.+++.+.|...
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 5689999999999999999999999999999999999 589999999999999999999987521
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...++.++.....+.+.+++.+....... ...++.|+||||+|.|....++.|++.|++++.+++||++++
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P-----~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP-----SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhh-----hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 12345566654456777777766553321 234579999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v 258 (305)
...++.+.+++||+.+.|++++.+++.++|..++..+++.++++++..|++.++|++|.++++|+.+.. ..+.++.+.|
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V 237 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQV 237 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999965443 4567999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVL 300 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~ 300 (305)
.++++......+..++..+..+|..+++.+++.|...+..+.
T Consensus 238 ~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~ 279 (944)
T PRK14949 238 QTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQ 279 (944)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 999999988889999999999999999999999987664443
No 15
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-35 Score=258.84 Aligned_cols=258 Identities=24% Similarity=0.308 Sum_probs=222.0
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+.+|.++|+|++|++++||+..++.+.+.+..++.+| ++|+||+|+||||+|+.+++.+.|...
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 5679999999999999999999999999999988888 699999999999999999999975321
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...+..+++......+.+++.+..... .+ ...++.|+||||+|.++...++.|++.+++++.++.+|++++
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~-~p----~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYY-SP----SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhc-Cc----ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 123455555443456666665554322 22 223478999999999999999999999999999999999998
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v 258 (305)
....+.+++.+||+.+.|++++.+++.+++..++.++|..+++++++.+++.++||+|.+++.++.++. ..+.|+.++|
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v 237 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNV 237 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 888899999999999999999999999999999999999999999999999999999999999987655 3467999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
.++++......++.+++++..+|..+++..++.+...+..+.-+
T Consensus 238 ~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~i 281 (363)
T PRK14961 238 TDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENI 281 (363)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999876555443
No 16
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-35 Score=265.97 Aligned_cols=256 Identities=22% Similarity=0.331 Sum_probs=224.2
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+.+|.++|||++|++++||+..++.|.+.+..++.+| ++|+||+|+|||++|+.+++.+.|.++
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999888777 899999999999999999999987532
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...++.+++....+.+.++..+...... ++. .+++|++|||+|.+....++.|++++++++.++.+|++++
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~-P~~----~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYL-PTT----FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhc-hhh----CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 1345666665556677777766554433 222 2378999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccC-ccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ-QITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~-~i~~~~v 258 (305)
....+.+++++||+.+.|.+++.+++..++...+.++|..+++++++.+++.++|++|.+++.++.++...+ .|+.++|
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V 237 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDI 237 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998776543 4999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVL 300 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~ 300 (305)
.++++......++.+++++..+|..+++.+++.|...+..+.
T Consensus 238 ~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~ 279 (605)
T PRK05896 238 NKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFE 279 (605)
T ss_pred HHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHH
Confidence 999999888889999999999999999999999988665443
No 17
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.8e-35 Score=263.30 Aligned_cols=257 Identities=25% Similarity=0.353 Sum_probs=226.7
Q ss_pred chhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC------------------
Q 021937 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ------------------ 102 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~------------------ 102 (305)
.+.++|||++|++++||+..++.|..++..+..+| ++|+||+|+||||+++.+++.+.|.+
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~ 82 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG 82 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence 35699999999999999999999999999999888 59999999999999999999997642
Q ss_pred CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 103 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
....+..++.....+.+.+++....... .++. .++.|+||||+|.+....++.|++.+++++.++.+|++++...
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~-~p~~----~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLL-APLR----GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhh-cccc----CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 2335777777655667777775444433 2222 3478999999999999999999999999988899999998888
Q ss_pred ccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhh
Q 021937 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCT 262 (305)
Q Consensus 183 ~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~ 262 (305)
.+.+.+.+||+.+.|.+++.+++.+++..++.++|+.+++++++.|++.++||+|.+++.|+.++...+.|+.++|++++
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l 237 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEAL 237 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988776789999999999
Q ss_pred CCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 263 GNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
+.....+++++++++..+|..+|+..++.|...+..+..++
T Consensus 238 ~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il 278 (504)
T PRK14963 238 GLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLV 278 (504)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999998876665543
No 18
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.1e-35 Score=266.45 Aligned_cols=263 Identities=24% Similarity=0.361 Sum_probs=231.2
Q ss_pred CCCCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-----------
Q 021937 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY----------- 103 (305)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~----------- 103 (305)
....+..|.++|||++|++++||+.+++.|.+.+..++.+| ++|+||+|+|||++|+.+++.+.|.+.
T Consensus 7 ~~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 7 AATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 34567889999999999999999999999999999998887 999999999999999999999987532
Q ss_pred -------------cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcC
Q 021937 104 -------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK 170 (305)
Q Consensus 104 -------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~ 170 (305)
...++.++.....+.+.+++.+.... ..++. .+++|+||||+|.++....+.|++++++++.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~-~~P~~----a~~KVvIIDEad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVR-YRPVS----ARYKVYIIDEVHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHH-hchhc----CCcEEEEEEChHhCCHHHHHHHHHHHHhCCC
Confidence 12355666666667888888776543 33332 3479999999999999999999999999999
Q ss_pred CceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-
Q 021937 171 NTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA- 249 (305)
Q Consensus 171 ~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~- 249 (305)
++.||++++...++.+.+++||+.+.|.+++.+++..++...+.++|..+++++++.|++.++|++|.+++.++++...
T Consensus 162 ~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g 241 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHG 241 (598)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 9999999998888999999999999999999999999999999999999999999999999999999999999776543
Q ss_pred cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 250 SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 250 ~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
.+.|+.++|+++++......++++++++..+|..+++..++.+...+..++.++
T Consensus 242 ~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il 295 (598)
T PRK09111 242 AGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVL 295 (598)
T ss_pred CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 457999999999999999999999999999999999999999988776666544
No 19
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.6e-35 Score=266.91 Aligned_cols=257 Identities=24% Similarity=0.361 Sum_probs=226.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+..|.++|||++|++++|++.+++.|.+++..++.+| ++|+||+|+|||++++.+++.+.|...
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 5679999999999999999999999999999998887 799999999999999999999876521
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...+++++.....+.+.+++.+...... ++. .+++|+||||+|.++....+.|++.+++++.++.||++++
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~-P~~----gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTA----GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhh-hhh----CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 1245667766667777787777654322 221 2379999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v 258 (305)
+...+...+++||..+.|++++.+++.+++..++.++|+.++++++..|++.++||+|.+++.|+++.. ..+.|+.++|
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V 237 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDV 237 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999977665 3467999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLF 301 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 301 (305)
..+++......++.+++++..+|...++..++.|...+..+..
T Consensus 238 ~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 238 RQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999887655443
No 20
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-36 Score=264.85 Aligned_cols=257 Identities=25% Similarity=0.391 Sum_probs=235.2
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+..+.++|||+.|++++||+.+...|.+.+..++..| ++|+||.|+||||+++.+++.++|.+
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 4568899999999999999999999999999999888 89999999999999999999998864
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....+++++.++..+++++++..+..... +..++++|++|||+|.++....++|++.++++|.++.||++|+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~-----P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYA-----PSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccC-----CccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 23467777888888899988887776443 3456689999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
...+++.++.+||+.+.|+.++.+++...+..++.++++.++++++..|++.++|.+|.++++|+++... .+.|+.+.|
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v 237 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESV 237 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999776664 468999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLF 301 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 301 (305)
..+++......+..++.++..+|...++..++++...++.+-.
T Consensus 238 ~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 238 RDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHH
Confidence 9999999999999999999999999999999999998765543
No 21
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.9e-35 Score=260.10 Aligned_cols=248 Identities=29% Similarity=0.427 Sum_probs=221.5
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-----------------
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (305)
..|.++|||++|++++||+..++.|...+.+++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999999999888 68999999999999999999997643
Q ss_pred --CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 103 --YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
....++.++.....+.+.+++.+...... ++ .+++.|+||||+|.+..+.+++|++.++++++++.||++++.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~-P~----~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYK-PS----MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhC-cc----cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 23456777766556778888877664322 22 234799999999999999999999999999999999999998
Q ss_pred CcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHHH
Q 021937 181 VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVY 259 (305)
Q Consensus 181 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~ 259 (305)
...+.+++++||+.++|.+++.+++.+++..++.++|+.++++++..|++.++|++|.+++.|++++.. .+.|+.++|.
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~ 236 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVA 236 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999877764 4579999999
Q ss_pred hhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHH
Q 021937 260 LCTGNPLPKDIEQISYWLLNESFADSFKRIQNLS 293 (305)
Q Consensus 260 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~ 293 (305)
++++......++.+++++..+|...++.++..+.
T Consensus 237 ~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L~ 270 (535)
T PRK08451 237 DMLGLLDPSKLEDFFQAILNQDKEKLFELLKELE 270 (535)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-35 Score=246.72 Aligned_cols=249 Identities=25% Similarity=0.370 Sum_probs=210.5
Q ss_pred cchhhhcCCCCccccccchHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (305)
.|+..++||+++++++||++.+. -|++.+.++..++++|||||||||||+|+.++... ...|..++... .+
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~-~g 85 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVT-SG 85 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-----CCceEEecccc-cc
Confidence 48999999999999999999994 89999999999999999999999999999999987 66788877665 67
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe--cCCcccchhhhcceeEE
Q 021937 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTRF 195 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~--~~~~~l~~~l~~r~~~i 195 (305)
..+++..++.+...... .++.||||||+|++++.+|..|+..+|+. ...+|.+| |....+.+++++||+++
T Consensus 86 vkdlr~i~e~a~~~~~~-----gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 86 VKDLREIIEEARKNRLL-----GRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred HHHHHHHHHHHHHHHhc-----CCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEeccCCCCCeeecHHHhhhhhee
Confidence 88888888887554433 23689999999999999999999999955 23333333 55567899999999999
Q ss_pred EecCCCHHHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCc---cCHHHHHhhh---
Q 021937 196 RFAPLEPVHVTERLKHVIE--AEGLD-----VTEGGLAALVRLCNGDMRKALNILQSTHMASQQ---ITEEAVYLCT--- 262 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~--~~~~~-----~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~---i~~~~v~~~~--- 262 (305)
.|+|++.+++.+.+.+.+. ..++. +++++.+.++..++||.|.++|.|+.+....+. ++.+.+++.+
T Consensus 159 ~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~ 238 (436)
T COG2256 159 ELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRR 238 (436)
T ss_pred eeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhh
Confidence 9999999999999998443 33444 789999999999999999999999988875532 4578887766
Q ss_pred -------CCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 263 -------GNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 263 -------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
++..++.+++++..|+++|+++|+.++..|..-+..|.++
T Consensus 239 ~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yi 285 (436)
T COG2256 239 SARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYI 285 (436)
T ss_pred hhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHH
Confidence 4567789999999999999999999999999988877654
No 23
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.1e-35 Score=266.25 Aligned_cols=254 Identities=21% Similarity=0.331 Sum_probs=222.9
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+.+|.++|||++|++++||+..++.|.+.+..++.+| ++|+||+|+||||+++.+++.+.|...
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 5789999999999999999999999999999999888 689999999999999999999987421
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...+++++.....+.+.+++.+....... ..+++.|+||||+|.|+...++.|++.+|+++.+++||++|+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p-----~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP-----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhh-----hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 12456677665566777887766543322 223479999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v 258 (305)
+...+.+++++||+.++|++++.+++..++..++..+++.++++++..|++.++|++|.++++++.+.. ..+.|+.++|
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v 237 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDV 237 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999976554 3567999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRL 298 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 298 (305)
..+++......+.++++++..+|..+++.++..|...+..
T Consensus 238 ~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d 277 (647)
T PRK07994 238 SAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPD 277 (647)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999988888899999999999999999999998765533
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=2e-34 Score=249.47 Aligned_cols=253 Identities=46% Similarity=0.805 Sum_probs=226.2
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
...+|.++|+|++|++++|+++.++.+..++..+..++++|+||+|+|||++++.+++.+.+.++...++.++.......
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 82 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI 82 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch
Confidence 35789999999999999999999999999999988888999999999999999999999977776667788877665555
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEec
Q 021937 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFA 198 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~ 198 (305)
..+.+.+.......++. ...+.+|+|||+|.+....++.|..+++.++.++.+|++++....+.+.+.+|+..++|+
T Consensus 83 ~~~~~~i~~~~~~~~~~---~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 83 DVIRNKIKEFARTAPVG---GAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HHHHHHHHHHHhcCCCC---CCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 55556666665544433 123689999999999998899999999988888999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHHH
Q 021937 199 PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLL 278 (305)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~ 278 (305)
+++.+++..++..++.+.|+.+++++++.+++.++||+|.+++.++.++..++.||.++|+.+++.....+++++++++.
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~ 239 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELAL 239 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888777899999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHH
Q 021937 279 NESFADSFKRIQNLSF 294 (305)
Q Consensus 279 ~~~~~~~~~~l~~l~~ 294 (305)
.++..+|+..++.|..
T Consensus 240 ~~~~~~a~~~l~~ll~ 255 (319)
T PRK00440 240 NGDFTEAREKLRDLMI 255 (319)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999874
No 25
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-34 Score=260.38 Aligned_cols=252 Identities=20% Similarity=0.344 Sum_probs=221.7
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+.+|.++|||++|++++|++..++.|.+.+..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 5789999999999999999999999999999988888 78999999999999999999997632
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....++.++.....+.+.+++.+...... ++ ..++.|+||||+|.++...++.|++.+++++..+.||++|+
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~-p~----~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYM-PS----QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhh-hh----cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 12245666665556677777766554332 22 23478999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
+...+.+++++||+.+.|.+++.+++.+++...+.++|+.++++++..|++.++||+|.+++.|+.++.. .+.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V 237 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQI 237 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 8888998999999999999999999999999999999999999999999999999999999999877653 467999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFII 296 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~ 296 (305)
+++++......++++++++..+|..+++..++.+...+
T Consensus 238 ~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~ 275 (546)
T PRK14957 238 KQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTE 275 (546)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999988888999999999999999999999988754
No 26
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.4e-35 Score=266.65 Aligned_cols=257 Identities=21% Similarity=0.358 Sum_probs=228.2
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+..|.++|||++|++++|++++++.|.+.+..+..+| ++|+||+|+|||++++.+++.+.|...
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 4568899999999999999999999999999998888 799999999999999999999987431
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...++++++....+.+.+++.+...... + ...+++|+||||+|.++...++.|++++++++.++.||++++
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~-p----~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYL-P----SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhc-c----ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 3346777777666777877766555332 2 233489999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
...++.+++++||+.+.|.+++..++..++..++.++|+.++++++..|++.++||+|.+++.|+++... .+.|+.++|
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV 237 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDV 237 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877654 467999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLF 301 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 301 (305)
..+++......++++++++..+|..+++..++.+...+..+..
T Consensus 238 ~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~ 280 (576)
T PRK14965 238 AELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQ 280 (576)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999987766543
No 27
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-34 Score=263.31 Aligned_cols=258 Identities=25% Similarity=0.388 Sum_probs=229.2
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+..|.++|||++|++++||+++++.|.+++..++.+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 4568899999999999999999999999999988888 78999999999999999999998653
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....++.++++...+.+.+++........ + ..+++.|+||||+|.+.....+.|++.+++++.++.||++++
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~-p----~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYA-P----SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhC-c----ccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 23457777777666777777776654332 2 234589999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
....+++++++||+.+.|.+++..++..++..++.+.|+.++++++..+++.++|++|.+++.|+++... .+.|+.++|
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V 237 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDA 237 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999877653 457999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
.++++......++++++++..+|..+++..++.+...++.+..+
T Consensus 238 ~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~ 281 (559)
T PRK05563 238 LEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRF 281 (559)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999998877766543
No 28
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.2e-34 Score=257.93 Aligned_cols=260 Identities=21% Similarity=0.330 Sum_probs=226.2
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC---------------
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------------- 102 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~--------------- 102 (305)
.+..|.++|||++|++++|++..++.|.+.+..+..++ ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 35779999999999999999999999999999988877 89999999999999999999997642
Q ss_pred -----CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEE
Q 021937 103 -----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 177 (305)
Q Consensus 103 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~ 177 (305)
....++.+++....+.+.+++......... ...++.|+||||+|.+..+.++.|++++++++.++.+|++
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~-----~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP-----SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh-----hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 123466666655556677766554443221 2234799999999999999999999999999889999999
Q ss_pred ecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHH
Q 021937 178 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEE 256 (305)
Q Consensus 178 ~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~ 256 (305)
++....+.+++++||..+.|++++.+++.+++...+.++|+.+++++++.|++.++||+|.+++.++.++.. .+.|+.+
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~ 237 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPD 237 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHH
Confidence 988889999999999999999999999999999999999999999999999999999999999999987653 4569999
Q ss_pred HHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 257 AVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 257 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
+|..+++.....+++++++++..+|..+|+.++..|...+..+..+|
T Consensus 238 ~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL 284 (451)
T PRK06305 238 SVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFL 284 (451)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHH
Confidence 99999999999999999999999999999999999998877665543
No 29
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1e-34 Score=272.22 Aligned_cols=253 Identities=22% Similarity=0.329 Sum_probs=223.5
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-----------------
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ----------------- 102 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 102 (305)
..|.++|||++|++++||+.+++.|.+.+..++.+| +||+||+|||||++++.+++.+.|..
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 457899999999999999999999999999999888 89999999999999999999998742
Q ss_pred ----CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021937 103 ----YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
....++.++.....+++.+++........ . ...+++|+||||+|.|+...++.|+++|++++.+++||+++
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~-p----~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFA-P----AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhc-h----hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 12346667766656778887765544322 2 23458999999999999999999999999999999999999
Q ss_pred cCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc--cCccCHH
Q 021937 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEE 256 (305)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--~~~i~~~ 256 (305)
+..+++.+.+++||+.+.|.+++.+++.++|.+++.++|+.++++.+..|++.++||+|.+++.|++++.. .+.|+.+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e 237 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYE 237 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHH
Confidence 98889999999999999999999999999999999999999999999999999999999999999988764 3569999
Q ss_pred HHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Q 021937 257 AVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRL 298 (305)
Q Consensus 257 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 298 (305)
+++++++......++++++++..+|..+++..++.+...+..
T Consensus 238 ~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 238 RAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999998865433
No 30
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-34 Score=258.00 Aligned_cols=259 Identities=26% Similarity=0.374 Sum_probs=224.2
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+.+|.++|+|++|.+++|++..++.|.+++..+..+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 5689999999999999999999999999999988888 689999999999999999999876221
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...++.++.+...+.+.++...... ...++. +++.|+||||+|.+.....+.|++++++++.++.+|++++
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~-~~~P~~----~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAV-SYTPIK----GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHH-HhCccc----CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 1235556655555666666544333 333332 3479999999999999999999999999999999999998
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
....+.+++.+||+.+.|++++.+++..++..++...|+.+++++++.|++.++|++|.+.+.|+.++.. .+.++.++|
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V 237 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVV 237 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999999887654 456999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
+.+++......++++++++..+|..+|+..++.|...+..+..+|
T Consensus 238 ~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL 282 (486)
T PRK14953 238 EEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFW 282 (486)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999999999988765555443
No 31
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.5e-34 Score=264.42 Aligned_cols=258 Identities=25% Similarity=0.397 Sum_probs=224.7
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC--------------
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------- 103 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------- 103 (305)
.+.+|.++|||++|++++||+..++.|.+.+..++.+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 4 ~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~ 83 (725)
T PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENV 83 (725)
T ss_pred chhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhh
Confidence 45789999999999999999999999999999988888 689999999999999999999987432
Q ss_pred --cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 104 --HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
...++.+++....+.+.+++.+...... ++ .+++.|+||||+|.+....+++|++.+++++..+.+|++++..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~-P~----~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNL-PT----QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhc-hh----cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 1234555554445667777766554333 32 2347999999999999999999999999999999999999999
Q ss_pred cccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHHHh
Q 021937 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYL 260 (305)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~ 260 (305)
..+++++++||+.+.|.+++.+++.+++..++.++|+.+++++++.+++.++|++|.+++.++.++.. .+.|+.+.|++
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~e 238 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877653 35699999999
Q ss_pred hhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Q 021937 261 CTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLF 301 (305)
Q Consensus 261 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 301 (305)
+++......++.+++++..++..+++.++..+...+..+..
T Consensus 239 llg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~ 279 (725)
T PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPEL 279 (725)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999877655543
No 32
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.1e-34 Score=254.16 Aligned_cols=259 Identities=21% Similarity=0.267 Sum_probs=224.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
...+.++|||++|++++||+..++.|.+++.+++.+| ++|+||+|+||||+|+.+++.+.|...
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 4567899999999999999999999999999998888 899999999999999999999987421
Q ss_pred ------------cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCC
Q 021937 104 ------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN 171 (305)
Q Consensus 104 ------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~ 171 (305)
...+..+++....+.+.+++....+... ++. +++.|+||||+|.+....++.|+++++++++.
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~-p~~----~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~ 157 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYG-PQK----GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH 157 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhc-hhc----CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC
Confidence 1234555554445567777765555333 222 33799999999999999999999999999989
Q ss_pred ceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc--
Q 021937 172 TRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-- 249 (305)
Q Consensus 172 ~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-- 249 (305)
+.+|++++....+.+++.+||+.+.|++++.+++.+++...+...+..+++++++.|++.++||+|.+.+.++++...
T Consensus 158 t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~ 237 (397)
T PRK14955 158 AIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSV 237 (397)
T ss_pred eEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 999999988888999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ----cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 250 ----SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 250 ----~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
.+.|+.++|.++++.....+++++++++..++..+++..++.|...+..++-+|
T Consensus 238 ~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL 295 (397)
T PRK14955 238 ESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFL 295 (397)
T ss_pred ccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 246999999999999999999999999999999999999999998776665443
No 33
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.6e-34 Score=258.47 Aligned_cols=253 Identities=22% Similarity=0.346 Sum_probs=219.0
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
..+|.++|||++|++++|++.+++.|.+.+..++.++ ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999987555 88999999999999999999998742
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....++.++......++.++...... ...++ ..++.||||||+|.+....++.|++++++++.++.+|++++
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~-~~~p~----~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAI-GYAPM----EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHH-Hhhhh----cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 12346667665556677776644333 22222 23478999999999999999999999999888999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v 258 (305)
....+.+.+++||+.+.|++++.+++.+++...+.++++.+++++++.|++.++|++|.+++.|+++.. ..+.|+.++|
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V 237 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGA 237 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 988999999999999999999999999999999999999999999999999999999999999976653 3457999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIR 297 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 297 (305)
+++++......++++++++...|...++.++..+...+.
T Consensus 238 ~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~ 276 (624)
T PRK14959 238 RGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGV 276 (624)
T ss_pred HHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999876543
No 34
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-34 Score=258.95 Aligned_cols=254 Identities=22% Similarity=0.337 Sum_probs=223.0
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+..|.++|+|++|++++|++..++.|.+++..++.+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 5679999999999999999999999999999998888 689999999999999999999977421
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...++.++.......+.+++.+..... .++ ..+++|+||||+|.++...++.|++.+++++.++.||++|+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~-~p~----~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQY-APT----RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhh-Ccc----cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 124566666655667777776665433 222 33479999999999999999999999999999999999999
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-ASQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v 258 (305)
+...+.+++++||+.+.|++++.+++.+++..++.++|+.++++++..|++.++|++|.+++.++++.. ..+.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v 237 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEV 237 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 988998899999999999999999999999999999999999999999999999999999999976655 4567999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRL 298 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 298 (305)
+++++......++++++++..+|...++..++.|...+..
T Consensus 238 ~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~ 277 (527)
T PRK14969 238 RAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLS 277 (527)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999888999999999999999999999999876543
No 35
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.4e-34 Score=259.99 Aligned_cols=259 Identities=21% Similarity=0.280 Sum_probs=226.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+..+.++|||++|++++||+.+++.|.+.+..++.+| ++|+||+|+||||+|+.+++.+.|...
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 3457899999999999999999999999999988888 899999999999999999999987421
Q ss_pred ------------cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCC
Q 021937 104 ------------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN 171 (305)
Q Consensus 104 ------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~ 171 (305)
...+..+++....+.+.+++.+....... +. +++.|+||||+|.+....++.|++++++++..
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P-~~----~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~ 157 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP-QK----GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPH 157 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh-hc----CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCC
Confidence 12455555555455777877766654332 22 23799999999999999999999999999999
Q ss_pred ceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc-
Q 021937 172 TRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS- 250 (305)
Q Consensus 172 ~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~- 250 (305)
+.+|++++...++.+++.+||+.+.|.+++.+++..++..++..+|..+++++++.|++.++||+|.+++.+++++...
T Consensus 158 tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~ 237 (620)
T PRK14954 158 AIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSV 237 (620)
T ss_pred eEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 9999999888899999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred -----CccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 251 -----QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 251 -----~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
+.|+.++|.++++.....+++++++++..++..+++..++.|...+..++-+|
T Consensus 238 ~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL 295 (620)
T PRK14954 238 GSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFL 295 (620)
T ss_pred ccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 46999999999999999999999999999999999999999998776666443
No 36
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=1.8e-33 Score=245.35 Aligned_cols=249 Identities=36% Similarity=0.616 Sum_probs=211.4
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc----
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---- 116 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---- 116 (305)
.+|.++|+|++|++++|++..++.|..++..+..++++|+||+|+|||++++++++.+.+.++...++.+++.+..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK 82 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch
Confidence 5799999999999999999999999999999888889999999999999999999998765544445565554310
Q ss_pred ----------------------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceE
Q 021937 117 ----------------------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF 174 (305)
Q Consensus 117 ----------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~i 174 (305)
..+.++..+.......++ ...+.+|+|||+|.+....++.|..+++..+..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----SADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----CCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 011122222222222222 233679999999999988899999999988878889
Q ss_pred EEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccC
Q 021937 175 ALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQIT 254 (305)
Q Consensus 175 il~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~ 254 (305)
|++++....+.+.+.+|+..+.|.+++.+++.+++...+.+.++.+++++++.+++.++||+|.+++.++.++...+.||
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It 238 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEIT 238 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Confidence 99988777888999999999999999999999999999999999999999999999999999999999998887667899
Q ss_pred HHHHHhhhCC-CChhhHHHHHHHHHcccHHHHHHHHHHHH
Q 021937 255 EEAVYLCTGN-PLPKDIEQISYWLLNESFADSFKRIQNLS 293 (305)
Q Consensus 255 ~~~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~l~ 293 (305)
.++++++++. ....+++++++++..++..+|+..+..|.
T Consensus 239 ~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~ 278 (337)
T PRK12402 239 MEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLL 278 (337)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999997 55889999999999999999999999986
No 37
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.7e-34 Score=257.08 Aligned_cols=259 Identities=21% Similarity=0.286 Sum_probs=225.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC----------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ---------------- 102 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~---------------- 102 (305)
+..+.++|||++|++++||+..++.|..++..+..+| ++|+||+|+|||++|+.+++.+.|..
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 4568899999999999999999999999999988888 89999999999999999999997642
Q ss_pred ---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 103 ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
....++.+++......+.+++....... .++ .+++.|+||||+|.++...++.|++.+++++..+.+|++++
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~-~p~----~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMF-PPA----SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHh-chh----cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 1234566665554566777765544433 222 23479999999999999999999999999999999999998
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v 258 (305)
...++.+++++||+.+.|.+++.+++.+++...+...|+.++++++..|++.++|++|.+++.|++++.. .+.|+.++|
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V 237 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQI 237 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999999876654 457999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
.++++......++++++++..+|..+++.+++.+...+..+..+|
T Consensus 238 ~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL 282 (563)
T PRK06647 238 RSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFL 282 (563)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999999999998776655443
No 38
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=2.5e-33 Score=246.00 Aligned_cols=258 Identities=27% Similarity=0.394 Sum_probs=222.3
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+.||.++|+|++|++++|++..++.|...+..+..++ ++|+||+|+|||++++.+++.+.+...
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3689999999999999999999999999999888777 799999999999999999999876421
Q ss_pred ----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 104 ----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
...++.+++......+.+++.+..... .++. .++.|++|||+|.+.....+.|++.+++++.++.+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~p~~----~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 155 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKY-APSS----GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT 155 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhc-Cccc----CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeC
Confidence 234566666544455556666555432 2222 3378999999999999999999999999888889999998
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc-CccCHHHH
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAV 258 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v 258 (305)
+...+.+++++||..+.|++++.+++.+++..++.+.|..+++++++.+++.++||+|.+.+.++++.... +.|+.++|
T Consensus 156 ~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v 235 (355)
T TIGR02397 156 EPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDV 235 (355)
T ss_pred CHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999998877644 45999999
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
+++++.....+++++++++..+|..+|+..+..+...+..++.+
T Consensus 236 ~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~i 279 (355)
T TIGR02397 236 NELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKF 279 (355)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999998876665543
No 39
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-33 Score=258.94 Aligned_cols=261 Identities=22% Similarity=0.298 Sum_probs=229.6
Q ss_pred CCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC--------------
Q 021937 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------- 102 (305)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------- 102 (305)
++...|.++|||++|++++||+..++.|.+.+..+..+| ++|+||+|+|||++++.+++.+.|..
T Consensus 2 ~~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 2 ENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred chhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 456779999999999999999999999999999998888 89999999999999999999997532
Q ss_pred ------CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEE
Q 021937 103 ------YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFAL 176 (305)
Q Consensus 103 ------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil 176 (305)
....+..+++......+.+++.+..+... ++.+ ++.|+||||+|.++...++.|++++++++.++.+|+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~-P~~~----~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIP-PQIG----KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhC-cccC----CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 23456677776555677788777665333 3332 379999999999999999999999999999999999
Q ss_pred EecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCH
Q 021937 177 ICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITE 255 (305)
Q Consensus 177 ~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~ 255 (305)
+++....+.+++++||+.+.|.+++.+++..++..++.++|+.+++++++.|++.++||+|.+++.++.++.. .+.|+.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~ 236 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITY 236 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccH
Confidence 9998899999999999999999999999999999999999999999999999999999999999999887653 345999
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 256 EAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 256 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
++|.+.+......+++++++++..++..+++..++.|...+..++.+|
T Consensus 237 ~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL 284 (614)
T PRK14971 237 KSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFI 284 (614)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999999999999998776665443
No 40
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.1e-33 Score=243.87 Aligned_cols=260 Identities=23% Similarity=0.346 Sum_probs=223.2
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-------CcccEEEe
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------YHNMILEL 110 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------~~~~~~~~ 110 (305)
.+.+|.++|+|++|++++|++..++.+.+.+..+..++ ++||||+|+|||++++.+++.+.+.+ ....++.+
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 45789999999999999999999999999999887665 89999999999999999999987632 23445555
Q ss_pred ecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhc
Q 021937 111 NASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQS 190 (305)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~ 190 (305)
+.......+.+++.+..+... ++ ..++.+|+|||+|.+....++.|++.+++++..+.+|++++....+.+++.+
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~-p~----~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIP-PQ----TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhc-cc----cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 554444556676666654332 22 2237899999999999988999999999988888899999888899999999
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHHHHhhhCCCChhh
Q 021937 191 RCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKD 269 (305)
Q Consensus 191 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~ 269 (305)
||..+.|++++.+++..++...+.+.|+.+++++++.++..++||+|.+.+.++.++.. .+.|+.++++++++.....+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~ 237 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDT 237 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999988764 34599999999999999999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 270 IEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
++++++++..++..+++..++.+...+..++-++
T Consensus 238 if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il 271 (367)
T PRK14970 238 YINVTDLILENKIPELLLAFNEILRKGFDGHHFI 271 (367)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999988766665443
No 41
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.2e-33 Score=254.48 Aligned_cols=259 Identities=25% Similarity=0.378 Sum_probs=226.4
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCC-eEEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
+.||.++|+|++|++++|++.++..|..++..++.+ +++|+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 578999999999999999999999999999988754 5999999999999999999999987421
Q ss_pred ------cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEE
Q 021937 104 ------HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALI 177 (305)
Q Consensus 104 ------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~ 177 (305)
...++.++.......+.+++.+..... .++ .++++|+||||+|.+..+.++.|++++++++..+.||++
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~-~p~----~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQF-APV----QARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhh-Chh----cCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEE
Confidence 123555665555667778777765432 222 234799999999999999999999999999999999999
Q ss_pred ecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHH
Q 021937 178 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA 257 (305)
Q Consensus 178 ~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~ 257 (305)
+++...+.+++++||+.+.|.+++.+++..++..++.+++..++++++..+++.++|++|.+++.++.++...+.|+.++
T Consensus 158 t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~ 237 (620)
T PRK14948 158 TTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEA 237 (620)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHH
Confidence 98888899999999999999999999999999999999999999999999999999999999999999888778899999
Q ss_pred HHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 258 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
|+++++......++++++++..++..+++..+..|...+..++.+|
T Consensus 238 V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL 283 (620)
T PRK14948 238 VWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAIL 283 (620)
T ss_pred HHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999988999999999999999999999999987766665443
No 42
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-32 Score=253.82 Aligned_cols=259 Identities=24% Similarity=0.374 Sum_probs=223.9
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---------------
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------- 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 103 (305)
.+.|.++|+|++|++++||+..++.|..++..+..+| ++|+||+|+|||++++.+++.+.|...
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 3458899999999999999999999999999888777 799999999999999999999976432
Q ss_pred -----cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021937 104 -----HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 104 -----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
...++.++.......+.+++.+.... ..++ ..++.|+||||+|.+..+..+.|++++++++.++.||+++
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~-~~p~----~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t 157 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQ-FRPA----LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILAT 157 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHh-hCcc----cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 12355566555456677776654433 2222 2347999999999999999999999999999899999999
Q ss_pred cCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCccCHHH
Q 021937 179 NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEA 257 (305)
Q Consensus 179 ~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~ 257 (305)
+....+.+.+++||+.+.|++++..++..++...+.+.|+.++++++..|++.++||+|.+++.|++++.. .+.|+.++
T Consensus 158 ~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~ 237 (585)
T PRK14950 158 TEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQ 237 (585)
T ss_pred CChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999987764 45799999
Q ss_pred HHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 258 VYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 258 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
|+++++......++++++++..+|..+++.+++.|...+..+..++
T Consensus 238 V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il 283 (585)
T PRK14950 238 VQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFT 283 (585)
T ss_pred HHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999999999998776555443
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=1.2e-30 Score=235.98 Aligned_cols=242 Identities=29% Similarity=0.400 Sum_probs=205.0
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCC----CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENR----LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
.+|.++|+|+++++++|++..++.|..++.... .++++|+||||+|||++|+++++.+ ...++.++.++..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r 76 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQR 76 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEcccccc
Confidence 579999999999999999999999999987532 5569999999999999999999997 4578888888766
Q ss_pred ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH----HHHHHHHHHHHHhcCCceEEEEecCCcccch-hhhcc
Q 021937 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKYTKNTRFALICNQVNKIIP-ALQSR 191 (305)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~-~l~~r 191 (305)
....+...+........+.+ .++.||+|||+|.+.. ...+.|+++++.. +..+|++++....... .++++
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~---~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFG---ARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred cHHHHHHHHHHhhccCcccC---CCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHhcc
Confidence 66677766666555443332 2478999999999975 4577888888843 5678888888777666 88999
Q ss_pred eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHH
Q 021937 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIE 271 (305)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 271 (305)
|..+.|++|+..++..++...+..+++.+++++++.|++.++||+|.+++.|+.++...+.++.+++..+.......+++
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if 231 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIF 231 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999977767789999999988788888999
Q ss_pred HHHHHHHc-ccHHHHHHHHHHH
Q 021937 272 QISYWLLN-ESFADSFKRIQNL 292 (305)
Q Consensus 272 ~l~~~~~~-~~~~~~~~~l~~l 292 (305)
++++.+.. .+...++..+..+
T Consensus 232 ~~l~~i~~~k~~~~a~~~~~~~ 253 (482)
T PRK04195 232 DALDAVFKARNADQALEASYDV 253 (482)
T ss_pred HHHHHHHCCCCHHHHHHHHHcc
Confidence 99999987 7888887766543
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.98 E-value=1.6e-30 Score=231.04 Aligned_cols=248 Identities=26% Similarity=0.386 Sum_probs=203.1
Q ss_pred chhhhcCCCCccccccchHHHHH---HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021937 42 PWVEKYRPQSLADVAAHRDIVDT---IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~---l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
||.++|||++|++++|+++.+.. |..++.++..++++|+|||||||||+|+.+++.. ...+..+++.. .+.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~-----~~~~~~l~a~~-~~~ 74 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT-----DAPFEALSAVT-SGV 74 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeccc-ccH
Confidence 79999999999999999999877 9999999988899999999999999999999987 44567776654 345
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec--CCcccchhhhcceeEEE
Q 021937 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN--QVNKIIPALQSRCTRFR 196 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~--~~~~l~~~l~~r~~~i~ 196 (305)
+.++..+........ ..++.+|+|||+|.+....++.|+..+++. ...++.+++ ....+.+++.+||..+.
T Consensus 75 ~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~~aL~SR~~~~~ 147 (413)
T PRK13342 75 KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVNPALLSRAQVFE 147 (413)
T ss_pred HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhccHHHhccceeeE
Confidence 556665555433221 123689999999999999999999999863 344444443 23468899999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCC--------
Q 021937 197 FAPLEPVHVTERLKHVIEAE--GL-DVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNP-------- 265 (305)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~-------- 265 (305)
|++++.+++..++...+... +. .+++++++.+++.++||+|.+++.++.++.....|+.+++..+++..
T Consensus 148 ~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~ 227 (413)
T PRK13342 148 LKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDG 227 (413)
T ss_pred eCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCc
Confidence 99999999999999887653 44 78999999999999999999999999887766679999999888642
Q ss_pred --ChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 266 --LPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 266 --~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
.++.++.+.+.++++|+++++.++..|...+..+.++
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3456778888899999999999999999888777654
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.98 E-value=1.9e-30 Score=240.96 Aligned_cols=252 Identities=22% Similarity=0.289 Sum_probs=199.3
Q ss_pred CCcchhhhcCCCCccccccchHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
...||.++|||++|++++|+++.+. .|.+.+..+..++++|+||||+||||+|+.+++.. ...++.+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~-----~~~f~~lna~~- 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT-----RAHFSSLNAVL- 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh-----cCcceeehhhh-
Confidence 4569999999999999999999984 68888998888899999999999999999999986 33455666543
Q ss_pred cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec--CCcccchhhhccee
Q 021937 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN--QVNKIIPALQSRCT 193 (305)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~--~~~~l~~~l~~r~~ 193 (305)
.+...+++.+.......... .++.++||||+|.+....++.|+..++.. ...+|.+++ ....+.+++.+|+.
T Consensus 88 ~~i~dir~~i~~a~~~l~~~----~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 88 AGVKDLRAEVDRAKERLERH----GKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred hhhHHHHHHHHHHHHHhhhc----CCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhHhhcccc
Confidence 23344444444432221111 13679999999999999999999888753 233333332 23457889999999
Q ss_pred EEEecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc-------CccCHHHHH
Q 021937 194 RFRFAPLEPVHVTERLKHVIE-------AEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-------QQITEEAVY 259 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-------~~i~~~~v~ 259 (305)
.+.|++++.+++..++...+. ..++.+++++++.|++.++||+|.+++.|+.++... ..++.+.++
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~ 241 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAE 241 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHH
Confidence 999999999999999999887 456789999999999999999999999999876532 126666666
Q ss_pred hhh----------CCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 260 LCT----------GNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 260 ~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
+.+ +...++.+++++++++++|+++|+.++..|...+..+.++
T Consensus 242 e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I 294 (725)
T PRK13341 242 ESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFI 294 (725)
T ss_pred HHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 644 4577889999999999999999999999999988777765
No 46
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.97 E-value=1.3e-30 Score=215.38 Aligned_cols=254 Identities=24% Similarity=0.300 Sum_probs=208.2
Q ss_pred CcchhhhcCCCCccccccchHHHH---HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVD---TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
..|+.++.||+++++++||++++. .|+.+++++..|+++||||||||||++|+.++..-.. ..+.|++++... .
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~--~SyrfvelSAt~-a 201 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK--HSYRFVELSATN-A 201 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC--CceEEEEEeccc-c
Confidence 348999999999999999999986 7888999999999999999999999999999987532 335577776655 5
Q ss_pred ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEe--cCCcccchhhhcceeE
Q 021937 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC--NQVNKIIPALQSRCTR 194 (305)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~--~~~~~l~~~l~~r~~~ 194 (305)
+..+++..+++......+... +.|+||||+|++.+.+|..|+..++.. ...+|.+| |....+..++.+||.+
T Consensus 202 ~t~dvR~ife~aq~~~~l~kr----kTilFiDEiHRFNksQQD~fLP~VE~G--~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKR----KTILFIDEIHRFNKSQQDTFLPHVENG--DITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcc----eeEEEeHHhhhhhhhhhhcccceeccC--ceEEEecccCCCccchhHHHHhccce
Confidence 667788888877666654443 789999999999999999999988854 23333333 4556789999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHc-----------C--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----cc-----Cc
Q 021937 195 FRFAPLEPVHVTERLKHVIEAE-----------G--LDVTEGGLAALVRLCNGDMRKALNILQSTHM----AS-----QQ 252 (305)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~-----------~--~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~-----~~ 252 (305)
+.+.+++..++..++.+..... + +.+++.+++.++..+.||.|.++|.|+.... .. ..
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~ 355 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVL 355 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccce
Confidence 9999999999999988744411 1 2467889999999999999999999987632 12 24
Q ss_pred cCHHHHHhhh----------CCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 253 ITEEAVYLCT----------GNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 253 i~~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
++.++|++.+ ++..+..|+++...|+++|.+++++||..|+.-++.|+.+
T Consensus 356 lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYV 415 (554)
T KOG2028|consen 356 LSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYV 415 (554)
T ss_pred ecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHH
Confidence 8888887666 6678889999999999999999999999999999888765
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=6e-30 Score=201.43 Aligned_cols=197 Identities=18% Similarity=0.275 Sum_probs=143.6
Q ss_pred CCCCCcchhhhcCCCCccccccchHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
..+.+.++.+++||++|++++||+++++.+.-++.. ...+|++||||||+||||+|+.+++++ ...+...
T Consensus 7 ~~~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~-----~~~~~~~ 81 (233)
T PF05496_consen 7 EQEEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL-----GVNFKIT 81 (233)
T ss_dssp -----S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC-----T--EEEE
T ss_pred cCCcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc-----CCCeEec
Confidence 345668899999999999999999999988776652 346789999999999999999999998 5566667
Q ss_pred ecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc------------------CCc
Q 021937 111 NASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNT 172 (305)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~ 172 (305)
+++......++...+..+. ++.|+||||+|++++.+++.|+..+|+.. ++.
T Consensus 82 sg~~i~k~~dl~~il~~l~-----------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 82 SGPAIEKAGDLAAILTNLK-----------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ECCC--SCHHHHHHHHT-------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred cchhhhhHHHHHHHHHhcC-----------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 7655455556555544331 25899999999999999999999999642 123
Q ss_pred eEEEEecCCcccchhhhcceeE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 021937 173 RFALICNQVNKIIPALQSRCTR-FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 248 (305)
.+|.+|+....+.+.+++||.. .++..++.+++.+++.+.+...+++++++...+|++.+.|+||-|.++|+.+--
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4566778888899999999955 589999999999999999999999999999999999999999999999987643
No 48
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.97 E-value=4.9e-28 Score=208.98 Aligned_cols=237 Identities=32% Similarity=0.455 Sum_probs=191.3
Q ss_pred CCCCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeE-EEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 36 PDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHL-LLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 36 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~-ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
..+...+|.++|+|++|++++|+++..+.+..++..+..+++ +++||+|+|||++++++++.+ ...+..+++..
T Consensus 4 ~~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~-----~~~~~~i~~~~ 78 (316)
T PHA02544 4 VNPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-----GAEVLFVNGSD 78 (316)
T ss_pred cCCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CccceEeccCc
Confidence 356778999999999999999999999999999998887775 559999999999999999987 33566677666
Q ss_pred CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC-CHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhccee
Q 021937 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM-TKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCT 193 (305)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l-~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~ 193 (305)
. ..+.++..+..+....++. ..+++|+|||+|.+ ..+.++.|..++++++.++.+|++++....+.+++++||.
T Consensus 79 ~-~~~~i~~~l~~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 79 C-RIDFVRNRLTRFASTVSLT----GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred c-cHHHHHHHHHHHHHhhccc----CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 2 3444555454444433322 23689999999999 6677888888899988889999999998899999999999
Q ss_pred EEEecCCCHHHHHHHHHH-------HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCC
Q 021937 194 RFRFAPLEPVHVTERLKH-------VIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPL 266 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~ 266 (305)
.+.|+.|+.++..+++.. .+...|..++++++..+++.+.|+.|.+++.++.++. .+.++.+++....
T Consensus 154 ~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~~~~l~~~~---- 228 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKIDAGILSEVT---- 228 (316)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCHHHHHHhh----
Confidence 999999998887755443 3445688999999999999999999999999997764 4578888877755
Q ss_pred hhhHHHHHHHHHcccHHHHHH
Q 021937 267 PKDIEQISYWLLNESFADSFK 287 (305)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~ 287 (305)
...+..+++++...|..++..
T Consensus 229 ~~~~~~l~~~l~~~d~~~~~~ 249 (316)
T PHA02544 229 NSDIDDVVEALKAKDFKAVRA 249 (316)
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 466778888888888776655
No 49
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.97 E-value=2.7e-28 Score=194.56 Aligned_cols=259 Identities=32% Similarity=0.544 Sum_probs=206.8
Q ss_pred chhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-------------------
Q 021937 42 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ------------------- 102 (305)
Q Consensus 42 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~------------------- 102 (305)
.|.++|+|+++.++.++.+....|+.....+..||+++|||+|+||-|.+.++.+++.+.+
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 5999999999999999999999999999988899999999999999999999999997643
Q ss_pred -----CcccEEEeecCCCcChh--HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEE
Q 021937 103 -----YHNMILELNASDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175 (305)
Q Consensus 103 -----~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~ii 175 (305)
.+...+++++++....+ .+.+.+++.++..+.....+....|++|-|+|.+..++|++|.+.++.+..+.++|
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 12235556655543333 56778888888877666666678999999999999999999999999999999999
Q ss_pred EEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCH
Q 021937 176 LICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 255 (305)
Q Consensus 176 l~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~ 255 (305)
+++|+.+++.+++++||..+.++.|+.+++...+...+.++|+.++.+.+.+|++.++||+|+++-+|+.++...+..+.
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876544333
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHcc----cHHHHHHHHHHHHHHHHHHHH
Q 021937 256 EAVYLCTGNPLPKDIEQISYWLLNE----SFADSFKRIQNLSFIIRLVLF 301 (305)
Q Consensus 256 ~~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~l~~l~~~~~~~~~ 301 (305)
.- ...........+..+.+.+... ...+....+..|+.+-..|-+
T Consensus 242 ~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~ 290 (351)
T KOG2035|consen 242 NS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNT 290 (351)
T ss_pred cC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHH
Confidence 21 1111222223333444444332 233445555666555444433
No 50
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.97 E-value=3.1e-29 Score=204.08 Aligned_cols=267 Identities=53% Similarity=0.684 Sum_probs=235.1
Q ss_pred CCCCCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC-CCCcccEEEeecC
Q 021937 35 PPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNAS 113 (305)
Q Consensus 35 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~ 113 (305)
.+.....||.++|+|..+.+++++++++..+.+....++.||+++|||||+|||+.+.+.++.+.+ .++...+.+++.+
T Consensus 23 ~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 23 QSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 334577899999999999999999999999999999999999999999999999999999999988 5666678889999
Q ss_pred CCcChhHHHHHHHHhhhcccccC-CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcce
Q 021937 114 DDRGIDVVRQQIQDFASTQSFSF-GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192 (305)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~ 192 (305)
+..+.+..++.+.......++.. .......++|+||+|.+..+.|++|.+.++.+..+++|+++++....+.+.+++||
T Consensus 103 d~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRc 182 (360)
T KOG0990|consen 103 DDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRC 182 (360)
T ss_pred CccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhccc
Confidence 98999988888877766553211 11245789999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHH-----HHhhhCCCCh
Q 021937 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEA-----VYLCTGNPLP 267 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~-----v~~~~~~~~~ 267 (305)
+.+.|.|++..+....+.+++..+....+++....+++.+.||.|.++|.||..+.....+++.. ++...+....
T Consensus 183 trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~ 262 (360)
T KOG0990|consen 183 TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQP 262 (360)
T ss_pred ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCCh
Confidence 99999999999999999999999999999999999999999999999999999988665555544 9999999999
Q ss_pred hhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Q 021937 268 KDIEQISYWLLNESFADSFKRIQNLSFIIRLVLF 301 (305)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 301 (305)
.++..+++.+...++..++.-+..+...+...+.
T Consensus 263 ~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~ 296 (360)
T KOG0990|consen 263 SDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQ 296 (360)
T ss_pred hHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHH
Confidence 9999999999999998888888777666555443
No 51
>PRK04132 replication factor C small subunit; Provisional
Probab=99.95 E-value=5.6e-26 Score=212.18 Aligned_cols=214 Identities=42% Similarity=0.725 Sum_probs=196.0
Q ss_pred EEEEC--CCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC
Q 021937 77 LLLYG--PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (305)
Q Consensus 77 ~ll~G--~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 154 (305)
.+..| |.+.||||+|+++++.+.+.++...++++|+++..+.+.+++.+..+....+... .+..|+||||+|.++
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~---~~~KVvIIDEaD~Lt 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGG---ASFKIIFLDEADALT 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCC---CCCEEEEEECcccCC
Confidence 45668 8999999999999999977777888999999998899999999988776554421 236899999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 021937 155 KDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (305)
Q Consensus 155 ~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 234 (305)
..++++|++++++++.++.||++||....+.+++++||+.+.|++++.+++...+...+.++|+.++++.+..|++.++|
T Consensus 644 ~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 644 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHH
Q 021937 235 DMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLS 293 (305)
Q Consensus 235 ~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~ 293 (305)
|+|.+++.||.++...+.|+.+.+..+.+......+.+++..+...++..+...+..+.
T Consensus 724 DlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell 782 (846)
T PRK04132 724 DMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREIL 782 (846)
T ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999887777899999999999999999999999999999999999888876
No 52
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=2.2e-24 Score=185.90 Aligned_cols=237 Identities=22% Similarity=0.347 Sum_probs=173.3
Q ss_pred hcCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-----C----------------
Q 021937 46 KYRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-----Y---------------- 103 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-----~---------------- 103 (305)
...|..+.+++|+.+..+.|...+.+++.+| ++|+||+|+|||++++.+++.+.|.. .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 3688999999999999999999999999888 89999999999999999999998721 0
Q ss_pred ----cccEEEeecC---------CCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcC
Q 021937 104 ----HNMILELNAS---------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK 170 (305)
Q Consensus 104 ----~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~ 170 (305)
...+..+..+ .....+.++.....+... + ...+..|+||||+|.++....+.|++.+++++.
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~----~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-S----GDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-c----ccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 0012223211 012245555443333222 2 223478999999999999999999999999999
Q ss_pred CceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc
Q 021937 171 NTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250 (305)
Q Consensus 171 ~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 250 (305)
++.++++++.+..+.+++++||+.+.|++++.+++.+++.......+ ++++.+..+++.++|++|.++++++.....
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~~~~~- 247 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNYGGLE- 247 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhcCcHH-
Confidence 99999999999999999999999999999999999999988543333 678889999999999999999998654321
Q ss_pred CccCHHHHHhhhC--CCChhhHHHHHHHHHcccHHHHHHHHHHHH
Q 021937 251 QQITEEAVYLCTG--NPLPKDIEQISYWLLNESFADSFKRIQNLS 293 (305)
Q Consensus 251 ~~i~~~~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~ 293 (305)
+. ..+...+. .........+.+.+.+.+.+..+.++..+.
T Consensus 248 --~~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~l 289 (351)
T PRK09112 248 --II-ATIDQLLAGSGPDARKAHKLADALSGRESEVQFDFFRDHL 289 (351)
T ss_pred --HH-HHHHHHHhhccCCcchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 11 11222222 112124456666666655555554444433
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.94 E-value=6.5e-25 Score=189.86 Aligned_cols=208 Identities=18% Similarity=0.245 Sum_probs=163.5
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
..|..+|+|.+|++++|+++.++.+..++.. ...++++|+||||+|||++++.+++.+. ..+...+....
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~-----~~~~~~~~~~~ 87 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG-----VNIRITSGPAL 87 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC-----CCeEEEecccc
Confidence 4577899999999999999999999887753 3345699999999999999999999983 23333333332
Q ss_pred cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc------------------CCceEEEE
Q 021937 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALI 177 (305)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~iil~ 177 (305)
.....+...+... ..+.+|+|||+|.++....+.|+..+++.. +...+|.+
T Consensus 88 ~~~~~l~~~l~~l-----------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 88 EKPGDLAAILTNL-----------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred cChHHHHHHHHhc-----------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 3333333333221 125899999999999888888888887542 23456777
Q ss_pred ecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-----ccC
Q 021937 178 CNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-----ASQ 251 (305)
Q Consensus 178 ~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-----~~~ 251 (305)
++....+.+.+++|| ..+.|++++.+++.+++...+...++.++++++..|++.++|++|.+.+.++.+.. ...
T Consensus 157 t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~ 236 (328)
T PRK00080 157 TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDG 236 (328)
T ss_pred cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCC
Confidence 788788889999998 67899999999999999999999999999999999999999999999999976543 235
Q ss_pred ccCHHHHHhhhCC
Q 021937 252 QITEEAVYLCTGN 264 (305)
Q Consensus 252 ~i~~~~v~~~~~~ 264 (305)
.|+.+.++.++..
T Consensus 237 ~I~~~~v~~~l~~ 249 (328)
T PRK00080 237 VITKEIADKALDM 249 (328)
T ss_pred CCCHHHHHHHHHH
Confidence 6888888877743
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=1.1e-23 Score=181.13 Aligned_cols=185 Identities=22% Similarity=0.403 Sum_probs=152.6
Q ss_pred CCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC---cccEEEeecC--CCcChhHHHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY---HNMILELNAS--DDRGIDVVRQ 123 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~ 123 (305)
++|++++|++..++.+...+..+..+| ++|+||+|+|||++|+.+++.+.|... ...+..+... .....+.+++
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~ 80 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN 80 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH
Confidence 368899999999999999999998888 689999999999999999999977432 2234444432 2234567777
Q ss_pred HHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCHH
Q 021937 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPV 203 (305)
Q Consensus 124 ~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~ 203 (305)
.+..... .++. ++++|++||++|.++...++.|++.++++|+++.+|++++..+.+.+++++||+.+.|.+++.+
T Consensus 81 ~~~~~~~-~p~~----~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~ 155 (313)
T PRK05564 81 IIEEVNK-KPYE----GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKE 155 (313)
T ss_pred HHHHHhc-Cccc----CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHH
Confidence 6655433 2222 3489999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021937 204 HVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
++..++.+... .++++.++.++.+++|++..+...+
T Consensus 156 ~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 156 EIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999876542 4678888899999999999887665
No 55
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=2.9e-23 Score=179.94 Aligned_cols=190 Identities=28% Similarity=0.452 Sum_probs=153.2
Q ss_pred cCCCCccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCc---------------------
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYH--------------------- 104 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~--------------------- 104 (305)
.+|+.+.+++||+..++.|.+.+.+++.+| ++|+||+|+||+++|..+++.+.|....
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999998 8999999999999999999999875421
Q ss_pred --------ccEEEeecC--C-------CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHH
Q 021937 105 --------NMILELNAS--D-------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEK 167 (305)
Q Consensus 105 --------~~~~~~~~~--~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~ 167 (305)
..+..+... . ...++.+++....+... + ...++.|++|||+|.++....+.|++.+++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~-~----~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT-A----AEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC-c----ccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 012223221 1 11345555544433222 2 234479999999999999999999999999
Q ss_pred hcCCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 021937 168 YTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (305)
Q Consensus 168 ~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 245 (305)
++.++.+|++++....+.+++++||+.+.|++++.+++.+++... +...+++.+..+++.++|+++.++..++.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~ 241 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGG 241 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 998999999999998999999999999999999999999999775 23345555578999999999999998864
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.92 E-value=9e-24 Score=169.76 Aligned_cols=204 Identities=16% Similarity=0.251 Sum_probs=164.9
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC
Q 021937 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (305)
.-...||+.|++|+||++++++|.-.++. ....|++|+||||.||||+|..+++++ ...+....++....
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-----gvn~k~tsGp~leK 90 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-----GVNLKITSGPALEK 90 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-----cCCeEecccccccC
Confidence 44678999999999999999999888764 345579999999999999999999998 44555555555555
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc------------------CCceEEEEec
Q 021937 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICN 179 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~iil~~~ 179 (305)
..++...+..+.. ++|+||||+|++++..-+.|+..+++.. +...+|.+|+
T Consensus 91 ~gDlaaiLt~Le~-----------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 91 PGDLAAILTNLEE-----------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred hhhHHHHHhcCCc-----------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 5565555544322 6999999999999999999999999742 2234566678
Q ss_pred CCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-----ccCcc
Q 021937 180 QVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM-----ASQQI 253 (305)
Q Consensus 180 ~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-----~~~~i 253 (305)
....+...++.|| ...++..++.+++.+++.+.+...++.++++...+|++.+.|.||-|..+|...-- ....|
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I 239 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDI 239 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 8888999999998 67889999999999999999999999999999999999999999999999965543 23457
Q ss_pred CHHHHHhhh
Q 021937 254 TEEAVYLCT 262 (305)
Q Consensus 254 ~~~~v~~~~ 262 (305)
+.+...+++
T Consensus 240 ~~~ia~~aL 248 (332)
T COG2255 240 DRDIADKAL 248 (332)
T ss_pred cHHHHHHHH
Confidence 766665555
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.92 E-value=2.2e-23 Score=179.12 Aligned_cols=199 Identities=15% Similarity=0.220 Sum_probs=154.1
Q ss_pred CCccccccchHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (305)
++|++|+|+++.++.|..++.. ...++++|+||||+|||++++++++.+. ..+.............+...
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~-----~~~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG-----VNLKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeccchhcCchhHHHH
Confidence 4689999999999999998873 4456799999999999999999999873 22333333322233333333
Q ss_pred HHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc------------------CCceEEEEecCCcccch
Q 021937 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------------------KNTRFALICNQVNKIIP 186 (305)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------------------~~~~iil~~~~~~~l~~ 186 (305)
+... ..+.+++|||+|.+++..++.|+.++++.. +...++.+++....+.+
T Consensus 76 l~~~-----------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~ 144 (305)
T TIGR00635 76 LTNL-----------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTS 144 (305)
T ss_pred HHhc-----------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCH
Confidence 3322 115799999999999988888988887543 12456666777778888
Q ss_pred hhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc-----cCccCHHHHHh
Q 021937 187 ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYL 260 (305)
Q Consensus 187 ~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~ 260 (305)
++++|| ..+.|++++.+++.+++...+...+..+++++++.|++.++|++|.+.+.+..+... ...|+.+.+++
T Consensus 145 ~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 145 PLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred HHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 999998 668999999999999999999989999999999999999999999999998765432 24588888877
Q ss_pred hhCC
Q 021937 261 CTGN 264 (305)
Q Consensus 261 ~~~~ 264 (305)
.+..
T Consensus 225 ~l~~ 228 (305)
T TIGR00635 225 ALEM 228 (305)
T ss_pred HHHH
Confidence 7643
No 58
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.92 E-value=3.1e-23 Score=188.80 Aligned_cols=226 Identities=23% Similarity=0.325 Sum_probs=172.5
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCC-----CCcccEEEeecCC
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA-----QYHNMILELNASD 114 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-----~~~~~~~~~~~~~ 114 (305)
..||.++|||.+|++++|++..++.++..+......+++|+||+|||||++|+.+++..... .....++.+++..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 47899999999999999999999999988877777889999999999999999998765321 1135678888764
Q ss_pred CcC-hhHHH-HHHHH-------hhh---cc-----cccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh---------
Q 021937 115 DRG-IDVVR-QQIQD-------FAS---TQ-----SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY--------- 168 (305)
Q Consensus 115 ~~~-~~~~~-~~i~~-------~~~---~~-----~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~--------- 168 (305)
... ...+. ..+.. ... .. ....-..+++++|+|||++.++...++.|++.+++.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 211 11111 11100 000 00 000112455789999999999999999999999752
Q ss_pred -------------------cCCceEEEEe-cCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 021937 169 -------------------TKNTRFALIC-NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAAL 228 (305)
Q Consensus 169 -------------------~~~~~iil~~-~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 228 (305)
+.+.++|++| +.+..+++++++||..+.|++++.+++.++++..+++.++.+++++++.|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I 291 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELI 291 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 1234566554 56778999999999999999999999999999999999999999999998
Q ss_pred HHHcCCCHHHHHHHHHHHhhcc-----CccCHHHHHhhhCCCC
Q 021937 229 VRLCNGDMRKALNILQSTHMAS-----QQITEEAVYLCTGNPL 266 (305)
Q Consensus 229 ~~~~~g~~r~~~~~l~~~~~~~-----~~i~~~~v~~~~~~~~ 266 (305)
.+++. |.|.+.+.++.++..+ ..|+.++++.+++...
T Consensus 292 ~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 292 VKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 88775 8999999999877532 3599999999987553
No 59
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.91 E-value=1.9e-22 Score=180.26 Aligned_cols=209 Identities=25% Similarity=0.410 Sum_probs=174.5
Q ss_pred CCcchhhhcCCCCccccccchHHHHHHHHHHhcC--------------------------------CCC--eEEEECCCC
Q 021937 39 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN--------------------------------RLP--HLLLYGPPG 84 (305)
Q Consensus 39 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~--------------------------------~~~--~~ll~G~~G 84 (305)
+...|.++|+|+.|.+++|.+..-..+..|++.+ +++ .++|+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 3348999999999999999888888777777532 122 289999999
Q ss_pred CcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHH
Q 021937 85 TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRV 164 (305)
Q Consensus 85 ~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~ 164 (305)
.||||||+.+|+.. ++.++++|+++......+.+.+..+.....+.. ...++.++||||+|.-.......++.+
T Consensus 337 lGKTTLAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~-adsrP~CLViDEIDGa~~~~Vdvilsl 410 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHSVLD-ADSRPVCLVIDEIDGAPRAAVDVILSL 410 (877)
T ss_pred CChhHHHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhccccc-cCCCcceEEEecccCCcHHHHHHHHHH
Confidence 99999999999997 778999999999999999999998887776542 234578999999999998888888888
Q ss_pred HHHh------cC---------------CceEEEEecCCcc-cchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 021937 165 IEKY------TK---------------NTRFALICNQVNK-IIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTE 222 (305)
Q Consensus 165 l~~~------~~---------------~~~iil~~~~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (305)
++.- ++ ...||++||+... -...|+..+.++.|.+|+...+.+.|+.+|.++|+..+.
T Consensus 411 v~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~ 490 (877)
T KOG1969|consen 411 VKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADS 490 (877)
T ss_pred HHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCH
Confidence 8721 11 1357888887653 345566668999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhccCcc
Q 021937 223 GGLAALVRLCNGDMRKALNILQSTHMASQQI 253 (305)
Q Consensus 223 ~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i 253 (305)
.++..+++++++|+|.++|.||.++...+.+
T Consensus 491 ~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ 521 (877)
T KOG1969|consen 491 KALNALCELTQNDIRSCINTLQFLASNVDRR 521 (877)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999877663
No 60
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=6.1e-23 Score=179.27 Aligned_cols=183 Identities=22% Similarity=0.354 Sum_probs=148.1
Q ss_pred CccccccchHHHHHHHHHHhcCC---------CCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-----------------
Q 021937 51 SLADVAAHRDIVDTIDRLTSENR---------LPH-LLLYGPPGTGKTSTILAVARKLYGAQY----------------- 103 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~----------------- 103 (305)
.|++++||+..++.|.+.+..+. .+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47899999999999999999875 555 899999999999999999999987531
Q ss_pred -cccEEEeecC-CCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 104 -HNMILELNAS-DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 104 -~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
...+..+... .....+.+++.+......+ ...+++|+||||+|.+....++.|++.+++++.++.+|++++..
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p-----~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRP-----STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCc-----ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 1112222222 2245666776665554322 23347899999999999999999999999999999999999999
Q ss_pred cccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021937 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 182 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
..+.+++++||+.+.|++|+.+++.+++... .+ ++++.+..+++.++|+++.++..+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999999999999999998888642 23 678888899999999999887665
No 61
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=5e-22 Score=169.14 Aligned_cols=230 Identities=20% Similarity=0.303 Sum_probs=163.3
Q ss_pred CccccccchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-------------cccEEEeecC---
Q 021937 51 SLADVAAHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------HNMILELNAS--- 113 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------~~~~~~~~~~--- 113 (305)
.|++++||+..++.|.+.+..++.+| ++|+||+|+||+++|.++++.+.|... ...+..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47899999999999999999998766 899999999999999999999987531 1112222211
Q ss_pred C--------------------CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCce
Q 021937 114 D--------------------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTR 173 (305)
Q Consensus 114 ~--------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~ 173 (305)
. ....+.+++... .....++. ++++|+|||++|.+.....++|++.+|++| ++.
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~-~l~~~p~~----~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKR-FLSRPPLE----APRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHH-HHccCccc----CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 0 011234444333 33333333 348999999999999999999999999999 889
Q ss_pred EEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCcc
Q 021937 174 FALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQI 253 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i 253 (305)
||++++..+.+.+++++||+.+.|++++.+++.+++.......+. +.....++..++|+++.+++.++.... +
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l~~~~~----~ 228 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANIEQLQS----I 228 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHHHHHHH----H
Confidence 999999999999999999999999999999999999886432221 122567889999999999998865432 2
Q ss_pred CHHHHHhhhC-CCChhhHHHHHHHHH-cccHHHHHHHHHHHH
Q 021937 254 TEEAVYLCTG-NPLPKDIEQISYWLL-NESFADSFKRIQNLS 293 (305)
Q Consensus 254 ~~~~v~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~~l~~l~ 293 (305)
..+.+..+.. ......+..+.+.+. ..+.++-...++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~ 270 (314)
T PRK07399 229 PPELLQKLEQPPKSPLEALELAKDISEELDIEQQLWLIDYLQ 270 (314)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2222222221 112334445555555 455555444444443
No 62
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.91 E-value=2.3e-22 Score=165.45 Aligned_cols=198 Identities=15% Similarity=0.208 Sum_probs=149.4
Q ss_pred Cccccc--cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021937 51 SLADVA--AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 51 ~~~~~~--g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
+|++|+ ++...+..+.++......++++|+||+|+||||+++++++.+...+....++.++.... ... +.+..+
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-~~~---~~~~~~ 95 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-FVP---EVLEGM 95 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-hhH---HHHHHh
Confidence 566666 46778888888877766677999999999999999999998866555455555443211 111 111111
Q ss_pred hhcccccCCCCCceEEEEEeCCCcCC--HHHHHHHHHHHHHhcC--CceEEEEecCCc----ccchhhhcce---eEEEe
Q 021937 129 ASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK--NTRFALICNQVN----KIIPALQSRC---TRFRF 197 (305)
Q Consensus 129 ~~~~~~~~~~~~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~--~~~iil~~~~~~----~l~~~l~~r~---~~i~~ 197 (305)
. ...+|+|||+|.+. +..+..|+.+++.... +..++++++... ...+++++|+ .++.+
T Consensus 96 ~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 96 E-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred h-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 1 13689999999986 3446677788876533 346777776443 2579999998 78999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhhC
Q 021937 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTG 263 (305)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~ 263 (305)
++|+.+++.+++++.+...|+.++++++++|++.++||+|.+.+.++.+.. ....||.+.++++++
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 999999999999998888899999999999999999999999999987652 235699998888764
No 63
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=1.4e-21 Score=168.45 Aligned_cols=182 Identities=26% Similarity=0.446 Sum_probs=144.6
Q ss_pred Ccccccc-chHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-------------------cccEEE
Q 021937 51 SLADVAA-HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILE 109 (305)
Q Consensus 51 ~~~~~~g-~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------------~~~~~~ 109 (305)
.|+.++| |+.+++.|...+..++.+| ++|+||+|+||+++|+.+++.+.|... ...+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3677888 9999999999999998888 699999999999999999999987531 112333
Q ss_pred eecC-CCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhh
Q 021937 110 LNAS-DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188 (305)
Q Consensus 110 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l 188 (305)
+... .....+.+++.+..+.... + .++++|+||||+|.+..+.+++|++.+|++|+++.+|++++....+.+++
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~-~----~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSG-V----ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCC-c----ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 3222 2234567777666654432 2 23479999999999999999999999999999999999999999999999
Q ss_pred hcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021937 189 QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 189 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
++||+.++|++++.+++.+++.. .| ++.+....++.. .|+++.++..++
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 99999999999999999888754 35 555655566655 578999888774
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.89 E-value=1.5e-21 Score=155.70 Aligned_cols=166 Identities=28% Similarity=0.464 Sum_probs=131.7
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-------------------CcccEEEeecC-CCcChhHH
Q 021937 63 DTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNAS-DDRGIDVV 121 (305)
Q Consensus 63 ~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~~-~~~~~~~~ 121 (305)
+.|.+.+..++.++ ++|+||+|+|||++++.+++.+.+.. ....+..+... .....+.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 45777888887776 89999999999999999999997641 01112222221 12345566
Q ss_pred HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCC
Q 021937 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~ 201 (305)
++.+..... .++. ..+.|++|||+|.+..+.++.|+++++++++++.+|++++....+.+++++|++.+.|.+++
T Consensus 82 ~~i~~~~~~-~~~~----~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 82 RELVEFLSR-TPQE----SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred HHHHHHHcc-Cccc----CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 665544433 2222 34799999999999999999999999999989999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 021937 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA 239 (305)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~ 239 (305)
.+++.+|+.+. | +++++++.+++.++|++|.+
T Consensus 157 ~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 157 EEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999776 4 78999999999999999864
No 65
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=8.7e-21 Score=162.34 Aligned_cols=171 Identities=26% Similarity=0.376 Sum_probs=135.9
Q ss_pred HHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-------------------cccEEEeecC---CCcChhHH
Q 021937 65 IDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILELNAS---DDRGIDVV 121 (305)
Q Consensus 65 l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------------~~~~~~~~~~---~~~~~~~~ 121 (305)
..+.+..++.+| ++|+||+|+|||++|+.+++.+.|... ...+..+... ....++.+
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH
Confidence 344455577777 899999999999999999999987531 1234444332 23467788
Q ss_pred HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCC
Q 021937 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLE 201 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~ 201 (305)
++.+..+..... .++++|++||++|.+.....++|++.+|+++.++.||++|+....+++++++||+.+.|++++
T Consensus 92 R~l~~~~~~~~~-----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 92 RELVSFVVQTAQ-----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred HHHHHHHhhccc-----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC
Confidence 886665544332 233799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021937 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
.+++.+++.... + ..+++....++..++|++..++..++
T Consensus 167 ~~~~~~~L~~~~---~-~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 167 NEESLQWLQQAL---P-ESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HHHHHHHHHHhc---c-cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 999999997643 1 24566667788999999999988764
No 66
>PRK08727 hypothetical protein; Validated
Probab=99.89 E-value=6e-21 Score=156.81 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=145.3
Q ss_pred CccccccchH-HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhh
Q 021937 51 SLADVAAHRD-IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (305)
Q Consensus 51 ~~~~~~g~~~-~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (305)
+|++|++.+. .+..+.....+.....++|+||+|+|||+++.++++.+...+....++...... ..+...+..+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----~~~~~~~~~l~ 92 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----GRLRDALEALE 92 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----hhHHHHHHHHh
Confidence 6787776553 444444444444444599999999999999999999887666544444432211 11222222221
Q ss_pred hcccccCCCCCceEEEEEeCCCcCC--HHHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcc---eeEEEecC
Q 021937 130 STQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSR---CTRFRFAP 199 (305)
Q Consensus 130 ~~~~~~~~~~~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~-~~~iil~~~~~~----~l~~~l~~r---~~~i~~~~ 199 (305)
...+|+|||++.+. ...+..++++++.... ...+|++++... .+.+++.+| +..+.+++
T Consensus 93 -----------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~ 161 (233)
T PRK08727 93 -----------GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPV 161 (233)
T ss_pred -----------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecC
Confidence 14799999999986 3455678888876543 445777776443 346899999 67899999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhhCCC
Q 021937 200 LEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTGNP 265 (305)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~~~ 265 (305)
|+.+++.+++++++...++.+++++++.|++.++||+|.+++.++.+.. ....||.+.+++++...
T Consensus 162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~~~ 231 (233)
T PRK08727 162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLEEG 231 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhc
Confidence 9999999999999998999999999999999999999999998876642 23568888888877543
No 67
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=6.8e-21 Score=163.42 Aligned_cols=178 Identities=28% Similarity=0.368 Sum_probs=145.6
Q ss_pred chHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-------------------cccEEEeecCC---
Q 021937 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILELNASD--- 114 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------------~~~~~~~~~~~--- 114 (305)
+....+++.+.+.+++.+| ++|+||+|+||+++|.++++.+.|... ...+..+.+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 4467788999999988888 789999999999999999999987421 12344443322
Q ss_pred CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021937 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (305)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~ 194 (305)
...++.+++....+.... ..++++|+|||++|.+.....++|++.+|++|+++.||++++.+..+.++++|||+.
T Consensus 87 ~I~idqiR~l~~~~~~~~-----~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHA-----RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred cCCHHHHHHHHHHHhhcc-----ccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 246777887666654443 223479999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 021937 195 FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (305)
Q Consensus 195 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 245 (305)
+.|++++.+++.+++... ..++.+.+..+++.++|++..++..++.
T Consensus 162 ~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~ 207 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQP 207 (334)
T ss_pred ccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 999999999999998642 2367777788899999999999988753
No 68
>PRK06893 DNA replication initiation factor; Validated
Probab=99.88 E-value=3.3e-21 Score=158.05 Aligned_cols=200 Identities=17% Similarity=0.264 Sum_probs=142.4
Q ss_pred CCCccccccchHHH--HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH
Q 021937 49 PQSLADVAAHRDIV--DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (305)
Q Consensus 49 p~~~~~~~g~~~~~--~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (305)
+.+|++|++++... ..+.+.......+.++|+||+|+||||+++++++++...+....++..+...... ...+.
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~----~~~~~ 87 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS----PAVLE 87 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh----HHHHh
Confidence 45789999765443 2333333444445689999999999999999999986666555555543221111 11111
Q ss_pred HhhhcccccCCCCCceEEEEEeCCCcCC--HHHHHHHHHHHHHhcCC-ce-EEEEecCCc----ccchhhhccee---EE
Q 021937 127 DFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTKN-TR-FALICNQVN----KIIPALQSRCT---RF 195 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~~-~~-iil~~~~~~----~l~~~l~~r~~---~i 195 (305)
.+ .+..+|+|||++.+. ......|+.+++..... .. ++++++... ...+.+.+|+. .+
T Consensus 88 ~~-----------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~ 156 (229)
T PRK06893 88 NL-----------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIY 156 (229)
T ss_pred hc-----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCee
Confidence 11 125799999999885 33355788888865433 33 345554432 23478999874 78
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc----cCccCHHHHHhhhC
Q 021937 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTG 263 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~ 263 (305)
.+++|+.+++.+++++.+...++.++++++++|++.++||+|.+.+.++.+... ...||.+.++++++
T Consensus 157 ~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 157 QLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999866431 24588888887764
No 69
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.87 E-value=5.1e-21 Score=166.12 Aligned_cols=184 Identities=40% Similarity=0.639 Sum_probs=149.2
Q ss_pred ccccchHHHHHHHHHHh-cCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-------------------CcccEEEeec
Q 021937 54 DVAAHRDIVDTIDRLTS-ENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-------------------YHNMILELNA 112 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~-~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-------------------~~~~~~~~~~ 112 (305)
++++++.....+..+.. .++.+| ++|+||+|+|||++|.++++.+.+.. ....+.+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 56788888888888887 566888 99999999999999999999997654 3467888998
Q ss_pred CCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcce
Q 021937 113 SDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192 (305)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~ 192 (305)
++....+...+.+..+....... +...+..|++|||+|.+..+.++++++.+++++.+++|+++++....+.+++++||
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~-~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSES-PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccC-CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcc
Confidence 88766544444455444433221 12345799999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc
Q 021937 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 249 (305)
+.+.|++++......+.. ++.+..++..+.||.|.+++.++..+..
T Consensus 161 ~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 161 QRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred eeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 999999855544433332 5678889999999999999999988875
No 70
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=5.4e-20 Score=156.22 Aligned_cols=178 Identities=23% Similarity=0.291 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-------------------cccEEEeecC--CC
Q 021937 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILELNAS--DD 115 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------------~~~~~~~~~~--~~ 115 (305)
+....+.+.+.+..++.+| ++|+||+|+||+++|+.+++.+.|... ...+..+... ..
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 4467788999999988888 789999999999999999999987431 1234444332 23
Q ss_pred cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEE
Q 021937 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (305)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i 195 (305)
.+++.+++........+ ..++.+|++||++|.+.....++|++.+|++|+++.||++++....+.++++|||+.+
T Consensus 87 I~id~iR~l~~~~~~~~-----~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 87 IGVDQVREINEKVSQHA-----QQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred CCHHHHHHHHHHHhhcc-----ccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 46777777665554333 2334799999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 021937 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 245 (305)
.|.+++.+++.+++.... ..+...+..++..++|.+..++..++.
T Consensus 162 ~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~ 206 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQ 206 (325)
T ss_pred eCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhC
Confidence 999999999999998653 134444667788999999988877643
No 71
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=6.6e-20 Score=155.51 Aligned_cols=176 Identities=25% Similarity=0.320 Sum_probs=140.5
Q ss_pred chHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCc----------------ccEEEee--cCC----
Q 021937 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYH----------------NMILELN--ASD---- 114 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~----------------~~~~~~~--~~~---- 114 (305)
+....+.+...+..++.+| ++|+||+|+||+++|..+++.+.|.+.. ..+..+. ...
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 5578889999999999998 8999999999999999999999875411 1233331 111
Q ss_pred ---CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcc
Q 021937 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191 (305)
Q Consensus 115 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r 191 (305)
...++.+++......... ..++.+|+|||++|.+.....++|++.+|++++++.||++++....+.++++||
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p-----~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTP-----QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccHHHHHHHHHHHhhCc-----ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 123555665555443332 223479999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021937 192 CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
|+.+.|.+|+.+++..++... + ++......++..++|.+..++..++
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 999999999999999998642 3 5556566789999999999988774
No 72
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.86 E-value=3.1e-20 Score=152.68 Aligned_cols=198 Identities=15% Similarity=0.238 Sum_probs=146.1
Q ss_pred CCCCccccc--cchHHHHHHHHHHhc-CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH
Q 021937 48 RPQSLADVA--AHRDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (305)
Q Consensus 48 ~p~~~~~~~--g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (305)
.|.+|++++ ++...+..+..+... .....++|+||+|+|||++++++++.....+.. +..+++.... ..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~--~~~i~~~~~~------~~ 84 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRN--ARYLDAASPL------LA 84 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCc--EEEEehHHhH------HH
Confidence 345678877 346677778777664 233459999999999999999999987655543 3444433211 11
Q ss_pred HHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCc--eEEEEecCCc---ccchhhhcce---eEEE
Q 021937 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNT--RFALICNQVN---KIIPALQSRC---TRFR 196 (305)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~--~iil~~~~~~---~l~~~l~~r~---~~i~ 196 (305)
+. + .....+|+|||+|.+....+..|+.+++...... .++++++... .+.+.+.+|+ ..+.
T Consensus 85 ~~-------~----~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~ 153 (227)
T PRK08903 85 FD-------F----DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYE 153 (227)
T ss_pred Hh-------h----cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEE
Confidence 10 0 1125799999999999888889999998654333 3444444322 2456777775 7899
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhhCC
Q 021937 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~~ 264 (305)
++||+.++...++...+.+.++.+++++++.|++.++||+|.+.+.++.+.. ....||...++++++.
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 9999999999999998888999999999999999999999999999877653 3356999999988764
No 73
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=1.1e-19 Score=153.96 Aligned_cols=174 Identities=23% Similarity=0.339 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC------------------cccEEEeecC---CC
Q 021937 58 HRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY------------------HNMILELNAS---DD 115 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~------------------~~~~~~~~~~---~~ 115 (305)
+....+.+.+.+..++.+| ++|+||.|+||+++|+.+++.+.|... ...+..+... ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 4467788899999998888 899999999999999999999987531 2234444432 22
Q ss_pred cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEE
Q 021937 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (305)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i 195 (305)
..++.+++........ + ..++.+|++||++|.+.....++|++.+|++|+++.||++++..+.+.++++|||+.+
T Consensus 88 I~vdqiR~l~~~~~~~-~----~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 88 ITVEQIRQCNRLAQES-S----QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CCHHHHHHHHHHHhhC-c----ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 3566776654443332 2 2234799999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021937 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
.|++|+.+++.+++... +.. ....+++.++|++..++..++
T Consensus 163 ~~~~~~~~~~~~~L~~~----~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQ----GIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred eCCCCCHHHHHHHHHHc----CCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 99999999999988643 432 235678899999999988874
No 74
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=2.6e-20 Score=170.40 Aligned_cols=211 Identities=21% Similarity=0.370 Sum_probs=139.6
Q ss_pred CCCcchhhhcCCCCccccccchHHHHHHHHHHhcCCCC-----eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021937 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLP-----HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~-----~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
+...+|.++|+|+++++++|+++.++.+..++.....+ .++|+||+|+||||+++.+++.+...... +.-.+++
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E-w~npv~~ 147 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE-WSNPTLP 147 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH-Hhhhhhh
Confidence 45678999999999999999999999999998864322 28999999999999999999987321100 0000000
Q ss_pred CC------------------CcChhHHHHHHHHhhhcccc-cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHH-Hh--cC
Q 021937 113 SD------------------DRGIDVVRQQIQDFASTQSF-SFGVKASVKLVLLDEADAMTKDAQFALRRVIE-KY--TK 170 (305)
Q Consensus 113 ~~------------------~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~--~~ 170 (305)
.. ....+.+...+..+...... ......++.||+|||++.+.......+..++. .. ..
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~ 227 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIG 227 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCC
Confidence 00 01122233333322211111 11123457899999997776444334444444 21 22
Q ss_pred CceEEEEecCCcc---------------cchhhhc--ceeEEEecCCCHHHHHHHHHHHHHHcCCC------C-CHHHHH
Q 021937 171 NTRFALICNQVNK---------------IIPALQS--RCTRFRFAPLEPVHVTERLKHVIEAEGLD------V-TEGGLA 226 (305)
Q Consensus 171 ~~~iil~~~~~~~---------------l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~------~-~~~~~~ 226 (305)
...+|++++.... +.+++.+ |+..+.|+|++..++.+.|..++..++.. + +++++.
T Consensus 228 ~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~ 307 (637)
T TIGR00602 228 RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVE 307 (637)
T ss_pred CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHH
Confidence 4456665542111 2267776 56789999999999999999999876431 2 467899
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhc
Q 021937 227 ALVRLCNGDMRKALNILQSTHMA 249 (305)
Q Consensus 227 ~l~~~~~g~~r~~~~~l~~~~~~ 249 (305)
.|+..++||+|.|++.||.++..
T Consensus 308 ~I~~~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 308 LLCQGCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred HHHHhCCChHHHHHHHHHHHHhc
Confidence 99999999999999999998653
No 75
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.9e-20 Score=155.33 Aligned_cols=197 Identities=22% Similarity=0.316 Sum_probs=144.4
Q ss_pred CccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC---
Q 021937 51 SLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--- 114 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~--- 114 (305)
+++++-|-++.++++++.+.- .++..++||||||||||.+|+++|++. ...|+.+.++.
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvgSElVq 223 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVVGSELVQ 223 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEeccHHHHH
Confidence 678999999999999988752 345559999999999999999999987 66788887764
Q ss_pred ---CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHH-----hcCCceEE
Q 021937 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEK-----YTKNTRFA 175 (305)
Q Consensus 115 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~-----~~~~~~ii 175 (305)
..+..-+++.+.-+.. ..+++|||||+|.+. .+.|..+++++.+ ...++++|
T Consensus 224 KYiGEGaRlVRelF~lAre---------kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 224 KYIGEGARLVRELFELARE---------KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred HHhccchHHHHHHHHHHhh---------cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 2233444444443333 337999999999984 3467778888774 34688999
Q ss_pred EEecCCcccchhhhcc--e-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHhhc--
Q 021937 176 LICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMR-KALNILQSTHMA-- 249 (305)
Q Consensus 176 l~~~~~~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r-~~~~~l~~~~~~-- 249 (305)
++||+.+-++|++.+- + +.+.|+.|+.+...++++.+..+.++. ++-.++.|++.+.|--. .+.+.|..+...
T Consensus 295 ~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 295 MATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 9999999999999884 4 679999999999999999998877642 22336778887765322 333444444432
Q ss_pred ---cCccCHHHHHhhh
Q 021937 250 ---SQQITEEAVYLCT 262 (305)
Q Consensus 250 ---~~~i~~~~v~~~~ 262 (305)
...++.+++.++.
T Consensus 374 R~~R~~Vt~~DF~~Av 389 (406)
T COG1222 374 RERRDEVTMEDFLKAV 389 (406)
T ss_pred HhccCeecHHHHHHHH
Confidence 2347777766554
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.86 E-value=1.1e-19 Score=166.99 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=150.4
Q ss_pred cccccchHHHHHHHHHHhc----CCCCe-EEEECCCCCcHHHHHHHHHHHHhC----CCC-cccEEEeecCCCcChhHHH
Q 021937 53 ADVAAHRDIVDTIDRLTSE----NRLPH-LLLYGPPGTGKTSTILAVARKLYG----AQY-HNMILELNASDDRGIDVVR 122 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~----~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~ 122 (305)
+.+.|++..++.|...+.. ..+.. ++|+|+||||||++++.+.+++.. ... .+.+++++|........+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5788999999888777653 33333 579999999999999999988742 122 2668899997655554443
Q ss_pred HHHHHhh-hccccc-------------C--CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc---CCceEEEEecC---
Q 021937 123 QQIQDFA-STQSFS-------------F--GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQ--- 180 (305)
Q Consensus 123 ~~i~~~~-~~~~~~-------------~--~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~---~~~~iil~~~~--- 180 (305)
..+.... ...+.. . .......||+|||+|.+....+..|+.+++... ..+.+|.+++.
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 3333222 111100 0 011234699999999998777788888888543 23345555554
Q ss_pred Ccccchhhhccee--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHhhcc--Ccc
Q 021937 181 VNKIIPALQSRCT--RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR---LCNGDMRKALNILQSTHMAS--QQI 253 (305)
Q Consensus 181 ~~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~~~g~~r~~~~~l~~~~~~~--~~i 253 (305)
...+.+.+++|+. .+.|+|++.+++.++|..++......+++++++.+++ ..+||+|.|+++|..++..+ ..|
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskV 994 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKI 994 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCcc
Confidence 3456788888874 4899999999999999999986555689999999998 66799999999999887643 347
Q ss_pred CHHHHHhhhCC
Q 021937 254 TEEAVYLCTGN 264 (305)
Q Consensus 254 ~~~~v~~~~~~ 264 (305)
+.++|.++...
T Consensus 995 T~eHVrkAlee 1005 (1164)
T PTZ00112 995 VPRDITEATNQ 1005 (1164)
T ss_pred CHHHHHHHHHH
Confidence 77777766643
No 77
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.85 E-value=5.4e-20 Score=146.20 Aligned_cols=205 Identities=21% Similarity=0.237 Sum_probs=146.9
Q ss_pred hhcCCCCccccccchHHHHHHHHH---Hh------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 45 EKYRPQSLADVAAHRDIVDTIDRL---TS------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 45 ~~~~p~~~~~~~g~~~~~~~l~~~---l~------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
+..+--.|++++||++.+...+-. +. .+.+.+++++||||+|||.+|++++++. ...++.+.....
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat~l 187 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKATEL 187 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-----CCceEEechHHH
Confidence 344455789999999998855443 33 3456679999999999999999999987 566777666542
Q ss_pred c------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH------------HHHHHHHHHHHHhc--CCceEE
Q 021937 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEKYT--KNTRFA 175 (305)
Q Consensus 116 ~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~~--~~~~ii 175 (305)
. +...+++....+. +..++|+||||+|.+.- +..++|+.-++... ..++.|
T Consensus 188 iGehVGdgar~Ihely~rA~---------~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 IGEHVGDGARRIHELYERAR---------KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHH---------hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1 2223333333332 23379999999998742 34567777777544 346777
Q ss_pred EEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH-----H-HHHh
Q 021937 176 LICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNI-----L-QSTH 247 (305)
Q Consensus 176 l~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~-----l-~~~~ 247 (305)
.+||++..+++++++|| ..+.|.-|+.+++.+++..++++..++++.+ ++.++..+.| +-|.+..- | +..+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 78899999999999999 7799999999999999999999988887766 7788887765 33333322 2 2333
Q ss_pred hccCccCHHHHHhhhCC
Q 021937 248 MASQQITEEAVYLCTGN 264 (305)
Q Consensus 248 ~~~~~i~~~~v~~~~~~ 264 (305)
...+.++.++++.++..
T Consensus 338 ed~e~v~~edie~al~k 354 (368)
T COG1223 338 EDREKVEREDIEKALKK 354 (368)
T ss_pred hchhhhhHHHHHHHHHh
Confidence 34566888888777653
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=1.4e-19 Score=151.62 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=132.3
Q ss_pred ccccccchHHHHHHHHHHhc---------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCC--CcccEEEeecCC
Q 021937 52 LADVAAHRDIVDTIDRLTSE---------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ--YHNMILELNASD 114 (305)
Q Consensus 52 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~--~~~~~~~~~~~~ 114 (305)
+++++|.+.++++++..... ....+++|+||||||||++|+.+++.+...+ ....++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 56789998888877655321 1334699999999999999999999875433 122455554433
Q ss_pred CcC--hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC--------HHHHHHHHHHHHHhcCCceEEEEecCC---
Q 021937 115 DRG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--------KDAQFALRRVIEKYTKNTRFALICNQV--- 181 (305)
Q Consensus 115 ~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~~l~~~~~~~~iil~~~~~--- 181 (305)
..+ .......+....... .++||||||+|.+. .+.+..|++.+++...+..+++++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a--------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKA--------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred hhhhhccchHHHHHHHHHhc--------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 111 001111112222111 14799999999976 345677888888776666666665322
Q ss_pred --cccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------cCCCHHHHHHHHHHHhh
Q 021937 182 --NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL----------CNGDMRKALNILQSTHM 248 (305)
Q Consensus 182 --~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~g~~r~~~~~l~~~~~ 248 (305)
..+.+.+.+|+ ..++|++++.+++.++++..+...+..++++++..+++. +.||.|.+.+.++.+..
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 23578999999 679999999999999999999988888999998888653 25999999999987654
No 79
>PRK05642 DNA replication initiation factor; Validated
Probab=99.85 E-value=2.3e-19 Score=147.49 Aligned_cols=208 Identities=17% Similarity=0.220 Sum_probs=142.8
Q ss_pred cchhhhcCCC-Ccccccc--chHHHHHHHHHHhc---CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 41 SPWVEKYRPQ-SLADVAA--HRDIVDTIDRLTSE---NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 41 ~~~~~~~~p~-~~~~~~g--~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
.++.-.+.|. +|++|+. +...++.+.++... +..+.++|+||+|+|||+|++++++++...+... ++++...
T Consensus 6 l~l~~~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v--~y~~~~~ 83 (234)
T PRK05642 6 LPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPA--VYLPLAE 83 (234)
T ss_pred cccCCCCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE--EEeeHHH
Confidence 3343344443 6777763 33333444444332 2234589999999999999999999876554433 3333322
Q ss_pred CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC--HHHHHHHHHHHHHhcC-CceEEEEecCC----cccchh
Q 021937 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTRFALICNQV----NKIIPA 187 (305)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~-~~~iil~~~~~----~~l~~~ 187 (305)
... .....+..+. ...+++|||++.+. +..+..|+.+++.... +..++++++.. ....++
T Consensus 84 ~~~--~~~~~~~~~~-----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~ 150 (234)
T PRK05642 84 LLD--RGPELLDNLE-----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPD 150 (234)
T ss_pred HHh--hhHHHHHhhh-----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCcc
Confidence 110 0111111111 13689999999885 3446779999986554 45566666532 234689
Q ss_pred hhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh---c-cCccCHHHHHh
Q 021937 188 LQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM---A-SQQITEEAVYL 260 (305)
Q Consensus 188 l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~---~-~~~i~~~~v~~ 260 (305)
+++|+ ..+.+++|+.++..++++..+...++.++++++++|++.++||+|.+.+.++.+.. . ...||...+++
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~ 230 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKE 230 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHH
Confidence 99998 78999999999999999988888899999999999999999999999999876643 2 35699988888
Q ss_pred hhC
Q 021937 261 CTG 263 (305)
Q Consensus 261 ~~~ 263 (305)
+++
T Consensus 231 ~L~ 233 (234)
T PRK05642 231 TLG 233 (234)
T ss_pred Hhc
Confidence 764
No 80
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.84 E-value=1.4e-19 Score=148.95 Aligned_cols=198 Identities=18% Similarity=0.270 Sum_probs=143.8
Q ss_pred CCccccc--cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 50 QSLADVA--AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 50 ~~~~~~~--g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
.+|++++ ++...++.+.+++......+++|+||+|||||++++.+++.....+. .++.+++..... .....+..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~~~~~ 87 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK--SAIYLPLAELAQ--ADPEVLEG 87 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--cEEEEeHHHHHH--hHHHHHhh
Confidence 4566666 36778899999887776777999999999999999999998765433 344454433211 11111111
Q ss_pred hhhcccccCCCCCceEEEEEeCCCcCCHHH--HHHHHHHHHHhc-CCceEEEEecCCc-c--c-chhhhcce---eEEEe
Q 021937 128 FASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYT-KNTRFALICNQVN-K--I-IPALQSRC---TRFRF 197 (305)
Q Consensus 128 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~--~~~l~~~l~~~~-~~~~iil~~~~~~-~--l-~~~l~~r~---~~i~~ 197 (305)
. .+..+|+|||+|.+.... ++.|+.+++... .+..+|++++... . . .+.+.+|+ ..+.+
T Consensus 88 ~-----------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l 156 (226)
T TIGR03420 88 L-----------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156 (226)
T ss_pred c-----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEec
Confidence 1 114699999999998643 778888887643 2346666665332 2 2 26677775 57999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhh
Q 021937 198 APLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCT 262 (305)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~ 262 (305)
++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+.. ..+.|+.+.+++++
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 999999999999998888899999999999999999999999999865543 33568888888765
No 81
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.84 E-value=7e-19 Score=155.07 Aligned_cols=222 Identities=18% Similarity=0.251 Sum_probs=149.7
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHHhCC----CCcccEEEeec
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTS----ENRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNA 112 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~~~~ 112 (305)
..+...|.|. +++|++..++.|...+. +..++.++|+||||+|||++++.+++.+... +....++.+++
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3455667775 57899999988888875 3445569999999999999999999987432 22256788888
Q ss_pred CCCcChhHHHH-HHHHhh--hcccccC---------------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHH-----hc
Q 021937 113 SDDRGIDVVRQ-QIQDFA--STQSFSF---------------GVKASVKLVLLDEADAMTKDAQFALRRVIEK-----YT 169 (305)
Q Consensus 113 ~~~~~~~~~~~-~i~~~~--~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-----~~ 169 (305)
........+.. ....+. ....... ....++.||+|||+|.+.......|+.+++. .+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~ 162 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLD 162 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCC
Confidence 76544333322 222221 1000000 0123467999999999964333444444432 12
Q ss_pred -CCceEEEEecCCc---ccchhhhcce--eEEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHH---HHcCCCHHH
Q 021937 170 -KNTRFALICNQVN---KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEA--EGLDVTEGGLAALV---RLCNGDMRK 238 (305)
Q Consensus 170 -~~~~iil~~~~~~---~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~---~~~~g~~r~ 238 (305)
.++.+|++++... .+.+.+.+|+ ..+.|+|++.+++.+++..++.. .+..+++++++.++ ..+.||+|.
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 3456777777654 4667777776 56999999999999999998863 23347787766654 455799999
Q ss_pred HHHHHHHHhhc-----cCccCHHHHHhhhCCC
Q 021937 239 ALNILQSTHMA-----SQQITEEAVYLCTGNP 265 (305)
Q Consensus 239 ~~~~l~~~~~~-----~~~i~~~~v~~~~~~~ 265 (305)
+++.|+.++.. ...|+.++|+++....
T Consensus 243 al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 243 AIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999876642 2469999998877654
No 82
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=2.1e-18 Score=147.59 Aligned_cols=169 Identities=25% Similarity=0.375 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCc--------------------ccEEEeecC-----
Q 021937 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYH--------------------NMILELNAS----- 113 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~--------------------~~~~~~~~~----- 113 (305)
...+++... .++.+| ++|+||+|+||+++|+.+++.+.|.... ..+..+...
T Consensus 8 ~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~ 85 (342)
T PRK06964 8 DDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85 (342)
T ss_pred HHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 455555554 345566 8999999999999999999999885311 122223211
Q ss_pred ------------------------CCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc
Q 021937 114 ------------------------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT 169 (305)
Q Consensus 114 ------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~ 169 (305)
....++.+++....... .+ ..++.+|+|||++|.+.....++|++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~-~~----~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp 160 (342)
T PRK06964 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGV-GT----HRGGARVVVLYPAEALNVAAANALLKTLEEPP 160 (342)
T ss_pred ccccccccccchhhcccccccccccccCHHHHHHHHHHhcc-CC----ccCCceEEEEechhhcCHHHHHHHHHHhcCCC
Confidence 11234566655544322 22 33447999999999999999999999999999
Q ss_pred CCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021937 170 KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 170 ~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
+++.||+++++.+.++++++|||+.+.|++|+.+++.+++... + +++. +.++..++|++..++..+
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALA 226 (342)
T ss_pred cCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999764 3 3332 345778899999998876
No 83
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.84 E-value=1.8e-19 Score=139.42 Aligned_cols=140 Identities=36% Similarity=0.611 Sum_probs=107.5
Q ss_pred cchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC------------------cccEEEeecCCC--
Q 021937 57 AHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY------------------HNMILELNASDD-- 115 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~------------------~~~~~~~~~~~~-- 115 (305)
||++.++.|.+.+..++.+| ++|+||+|+||+++|..+++.+.+... ...+..+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999999998 799999999999999999999977542 335666655543
Q ss_pred -cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021937 116 -RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (305)
Q Consensus 116 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~ 194 (305)
...+.++........ .+ ...+++|++|||+|.+..+.+++|++.||+++.++.||++++....+.+++++||+.
T Consensus 81 ~i~i~~ir~i~~~~~~-~~----~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSL-SP----SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQV 155 (162)
T ss_dssp SBSHHHHHHHHHHCTS-S-----TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEE
T ss_pred hhhHHHHHHHHHHHHH-HH----hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceE
Confidence 456677755544432 22 223489999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 021937 195 FRFAPLE 201 (305)
Q Consensus 195 i~~~~~~ 201 (305)
+.|++++
T Consensus 156 i~~~~ls 162 (162)
T PF13177_consen 156 IRFRPLS 162 (162)
T ss_dssp EEE----
T ss_pred EecCCCC
Confidence 9998864
No 84
>PRK06620 hypothetical protein; Validated
Probab=99.83 E-value=5.3e-19 Score=142.87 Aligned_cols=190 Identities=14% Similarity=0.165 Sum_probs=129.9
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhcCC--C--CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021937 43 WVEKYRPQSLADVAAHRDIVDTIDRLTSENR--L--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~--~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
+..+|...+|-.--.+......+..+...+. + +.++||||+|+||||+++++++.. ...++. ... . .
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-----~~~~~~--~~~-~-~ 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-----NAYIIK--DIF-F-N 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc-----CCEEcc--hhh-h-c
Confidence 3344444444222225566777777776422 2 459999999999999999987764 111111 000 0 0
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCC-ceEEEEecCCc---ccchhhhccee-
Q 021937 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN-TRFALICNQVN---KIIPALQSRCT- 193 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~-~~iil~~~~~~---~l~~~l~~r~~- 193 (305)
. .... ...+++|||+|.+.. ..|+.+++..... ..++++++... .+ +++++|+.
T Consensus 80 ~-------~~~~----------~~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~ 138 (214)
T PRK06620 80 E-------EILE----------KYNAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKS 138 (214)
T ss_pred h-------hHHh----------cCCEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhC
Confidence 0 0000 147899999997743 3555665544323 34555554322 24 88999985
Q ss_pred --EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhh
Q 021937 194 --RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCT 262 (305)
Q Consensus 194 --~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~ 262 (305)
++.+++|+.+++..++++.+...++.++++++++|++.++||+|.+.+.++.+.. ....||.+.+++++
T Consensus 139 gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 139 VLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred CceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 8999999999999999999988899999999999999999999999999987643 23458888888765
No 85
>PRK09087 hypothetical protein; Validated
Probab=99.82 E-value=5.2e-19 Score=144.15 Aligned_cols=198 Identities=19% Similarity=0.210 Sum_probs=139.2
Q ss_pred cchhhhcCCC-Ccccccc---chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021937 41 SPWVEKYRPQ-SLADVAA---HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 41 ~~~~~~~~p~-~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
.++.-.+.|. +|++|+. +......+.++. +...+.++|+||+|+|||||++++++.. ...++... . .
T Consensus 8 l~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~--~-~ 78 (226)
T PRK09087 8 LPLNFSHDPAYGRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPN--E-I 78 (226)
T ss_pred eeeCCCCCCCCChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHH--H-c
Confidence 3333333333 6788875 455556555544 3334559999999999999999998764 22222221 1 1
Q ss_pred ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcc
Q 021937 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSR 191 (305)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~----~l~~~l~~r 191 (305)
..+. +... . ..+|+|||++.+. ..+..|+.+++.... ...++++++... ...+++++|
T Consensus 79 ~~~~----~~~~-~-----------~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SR 141 (226)
T PRK09087 79 GSDA----ANAA-A-----------EGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSR 141 (226)
T ss_pred chHH----HHhh-h-----------cCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHH
Confidence 1111 1111 0 2589999999875 345678888886554 455666665332 246889999
Q ss_pred e---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh---hc-cCccCHHHHHhhhCC
Q 021937 192 C---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH---MA-SQQITEEAVYLCTGN 264 (305)
Q Consensus 192 ~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~---~~-~~~i~~~~v~~~~~~ 264 (305)
+ ..+.+++|+.+++.+++++.+...++.++++++++|++.+.|+++.+...+..+. .. ...+|...+++++..
T Consensus 142 l~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 142 LKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred HhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 7 8899999999999999999999999999999999999999999999998665443 22 456999999888864
No 86
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.82 E-value=1.9e-18 Score=153.78 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=150.1
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021937 43 WVEKYRPQSLADVAAHRDIVDTIDRLTS----ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 43 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~----~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
+...|.| +.++|++..++.|...+. +..+++++|+||||+|||++++.+++.+........++.+++......
T Consensus 23 l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 23 LEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 3344444 567899999988888764 334566999999999999999999998865544567888887754443
Q ss_pred hHHH-HHHHHhhhcc-cccC--------------CCCCceEEEEEeCCCcCC----HHHHHHHHHHHHHhcC-CceEEEE
Q 021937 119 DVVR-QQIQDFASTQ-SFSF--------------GVKASVKLVLLDEADAMT----KDAQFALRRVIEKYTK-NTRFALI 177 (305)
Q Consensus 119 ~~~~-~~i~~~~~~~-~~~~--------------~~~~~~~vliiDe~~~l~----~~~~~~l~~~l~~~~~-~~~iil~ 177 (305)
..+. ..+..+.... +... ....++.||+|||+|.+. .+....|+++.+..+. +..+|++
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEE
Confidence 3222 2222221100 0000 012346799999999986 2233444444444332 4557777
Q ss_pred ecCCc---ccchhhhcce--eEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHh
Q 021937 178 CNQVN---KIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVRLC---NGDMRKALNILQSTH 247 (305)
Q Consensus 178 ~~~~~---~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~ 247 (305)
++... .+.+.+.+|+ ..+.|+|++.+++.+++..++... ...+++++++.+++.+ .||+|.+++.|..++
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 76543 3556666665 578999999999999999988643 2358899999998888 899999999997655
Q ss_pred hc-----cCccCHHHHHhhhCCC
Q 021937 248 MA-----SQQITEEAVYLCTGNP 265 (305)
Q Consensus 248 ~~-----~~~i~~~~v~~~~~~~ 265 (305)
.. ...|+.+++.++....
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH
Confidence 32 2469999998777654
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.81 E-value=4.1e-18 Score=157.68 Aligned_cols=226 Identities=22% Similarity=0.289 Sum_probs=162.2
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCCC
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 115 (305)
.+..+.++|.+|++++|++..++.+...+......+++|+||+||||||+|+.+.+...... ....++.+++...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 45677899999999999999999998888777777899999999999999999988763211 1345777776543
Q ss_pred cC-hhHHHH------------HHHHhhhccc-----ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc--------
Q 021937 116 RG-IDVVRQ------------QIQDFASTQS-----FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------- 169 (305)
Q Consensus 116 ~~-~~~~~~------------~i~~~~~~~~-----~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------- 169 (305)
.. ...+.. .......... ........+++|||||++.++...+..|++.+++..
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeeccee
Confidence 21 111100 0000000000 000112346799999999999999999999998531
Q ss_pred ------------------CCceEEEE--e-cCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 021937 170 ------------------KNTRFALI--C-NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAAL 228 (305)
Q Consensus 170 ------------------~~~~iil~--~-~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 228 (305)
....++++ + +....+.+.+++||..+.|++++.+++..++...+.+.+..+++++++.|
T Consensus 302 ~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L 381 (615)
T TIGR02903 302 DPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELI 381 (615)
T ss_pred ccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 11223333 3 44567889999999999999999999999999999988888999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhhc----------c---CccCHHHHHhhhCCCCh
Q 021937 229 VRLCNGDMRKALNILQSTHMA----------S---QQITEEAVYLCTGNPLP 267 (305)
Q Consensus 229 ~~~~~g~~r~~~~~l~~~~~~----------~---~~i~~~~v~~~~~~~~~ 267 (305)
++++. +.|++++.|+.+... . ..|+.++++++++....
T Consensus 382 ~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r~ 432 (615)
T TIGR02903 382 ARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISRL 432 (615)
T ss_pred HHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCcC
Confidence 88764 779999988655322 1 14888999988877643
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.81 E-value=1.7e-18 Score=140.59 Aligned_cols=189 Identities=18% Similarity=0.303 Sum_probs=127.5
Q ss_pred Cccccc-c--chHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHH
Q 021937 51 SLADVA-A--HRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (305)
Q Consensus 51 ~~~~~~-g--~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (305)
+|++|+ | +................ +.++||||+|+|||+|++++++++........+++++.... ...+...+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f--~~~~~~~~ 83 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF--IREFADAL 83 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH--HHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH--HHHHHHHH
Confidence 567775 4 45555666666555332 34899999999999999999999865444445555543321 11111111
Q ss_pred H-----HhhhcccccCCCCCceEEEEEeCCCcCCHHH--HHHHHHHHHHhc-CCceEEEEecCC----cccchhhhcce-
Q 021937 126 Q-----DFASTQSFSFGVKASVKLVLLDEADAMTKDA--QFALRRVIEKYT-KNTRFALICNQV----NKIIPALQSRC- 192 (305)
Q Consensus 126 ~-----~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~--~~~l~~~l~~~~-~~~~iil~~~~~----~~l~~~l~~r~- 192 (305)
. .+... + ....+++|||+|.+.... +..|+.+++... .+..+|++++.. ..+.+.+.+|+
T Consensus 84 ~~~~~~~~~~~--~-----~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 84 RDGEIEEFKDR--L-----RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp HTTSHHHHHHH--H-----CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred Hcccchhhhhh--h-----hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 1 00000 0 125899999999998654 788999998654 345677777433 24577888985
Q ss_pred --eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 021937 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248 (305)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 248 (305)
..+.+.+|+.++..+++++.+...|+.+++++++.|++...+|+|.+...|..+..
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDA 214 (219)
T ss_dssp CSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999987764
No 89
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.81 E-value=3e-18 Score=154.25 Aligned_cols=206 Identities=25% Similarity=0.435 Sum_probs=137.4
Q ss_pred CCCcchhhhcCCCCccccccchHHHHHHHHHHhcCC-----CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021937 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENR-----LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
....+|.++|+|++.++++.++..+++++.|+.... ...++|+||+||||||+++.+++++. ..+.+...
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg-----~~v~Ew~n 78 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG-----FEVQEWIN 78 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CeeEEecC
Confidence 356889999999999999999999999999998531 23489999999999999999999983 22222211
Q ss_pred CCC-----------c----ChhHHH---HHHHHh-hhcccc------cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHH
Q 021937 113 SDD-----------R----GIDVVR---QQIQDF-ASTQSF------SFGVKASVKLVLLDEADAMTKDAQFALRRVIEK 167 (305)
Q Consensus 113 ~~~-----------~----~~~~~~---~~i~~~-~~~~~~------~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~ 167 (305)
+.. . ..+... ..+..+ .....+ ......++.||+|||+..........|..++..
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~ 158 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQ 158 (519)
T ss_pred CCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHH
Confidence 110 0 000001 112222 111111 112235688999999988765444666666654
Q ss_pred h---cCC-ceEEEEec--C------Cc--------ccchhhhcc--eeEEEecCCCHHHHHHHHHHHHHHc-----CC-C
Q 021937 168 Y---TKN-TRFALICN--Q------VN--------KIIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAE-----GL-D 219 (305)
Q Consensus 168 ~---~~~-~~iil~~~--~------~~--------~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~-----~~-~ 219 (305)
. ... ..|++++. . .. -+.+.+... +..+.|.|.+..-+.+.|.+++..+ +. .
T Consensus 159 ~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~ 238 (519)
T PF03215_consen 159 YLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNK 238 (519)
T ss_pred HHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCcc
Confidence 2 112 33333331 1 00 234555554 5789999999999999999999877 22 2
Q ss_pred CC--HHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 021937 220 VT--EGGLAALVRLCNGDMRKALNILQSTHM 248 (305)
Q Consensus 220 ~~--~~~~~~l~~~~~g~~r~~~~~l~~~~~ 248 (305)
.+ .++++.|++.++||+|.|++.||.++.
T Consensus 239 ~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 239 VPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred CCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 33 356899999999999999999999998
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.80 E-value=6.6e-18 Score=150.88 Aligned_cols=213 Identities=13% Similarity=0.185 Sum_probs=145.7
Q ss_pred CCCccccccch---HHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021937 49 PQSLADVAAHR---DIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 49 p~~~~~~~g~~---~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
+.+|++|+..+ .....+..+.... ..+.++|+|++|+|||+|++++++.+........++++++... ...+..
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f--~~~~~~ 188 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF--ARKAVD 188 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHH
Confidence 45788777432 2344555555432 2345999999999999999999998764333445555554321 111111
Q ss_pred HHHHhhhcc-cccCCCCCceEEEEEeCCCcCC--HHHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcce---
Q 021937 124 QIQDFASTQ-SFSFGVKASVKLVLLDEADAMT--KDAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRC--- 192 (305)
Q Consensus 124 ~i~~~~~~~-~~~~~~~~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~-~~~iil~~~~~~----~l~~~l~~r~--- 192 (305)
.+....... .+.. .-....+|+|||++.+. ...++.|+.+++.... +..+|++++... .+.+++.+|+
T Consensus 189 ~l~~~~~~~~~~~~-~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G 267 (450)
T PRK14087 189 ILQKTHKEIEQFKN-EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG 267 (450)
T ss_pred HHHHhhhHHHHHHH-HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC
Confidence 111100000 0000 00125799999999987 5567889998886543 346777776543 3567888886
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHhh---cc---CccCHHHHHhhhCC
Q 021937 193 TRFRFAPLEPVHVTERLKHVIEAEGL--DVTEGGLAALVRLCNGDMRKALNILQSTHM---AS---QQITEEAVYLCTGN 264 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~---~~---~~i~~~~v~~~~~~ 264 (305)
..+.+++|+.+++.+++++.+...|. .+++++++.|++.++||+|.+.+.|..+.. .. ..||.+.+++++..
T Consensus 268 l~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 268 LSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred ceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 57899999999999999999988775 699999999999999999999999976643 22 46999999888764
No 91
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=7.7e-18 Score=141.99 Aligned_cols=188 Identities=22% Similarity=0.300 Sum_probs=130.8
Q ss_pred cccccchHHHHHHHHHHh---------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCc--ccEEEeecCCC
Q 021937 53 ADVAAHRDIVDTIDRLTS---------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASDD 115 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~---------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~~~~~~~ 115 (305)
.+++|.+.+++++.++.. .....+++|+||||||||++|+++++.+...+.. ..++.++....
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 468999888887766532 0123458999999999999999999987543321 23555553321
Q ss_pred cC--hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC---------CHHHHHHHHHHHHHhcCCceEEEEecCC--c
Q 021937 116 RG--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIEKYTKNTRFALICNQV--N 182 (305)
Q Consensus 116 ~~--~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l---------~~~~~~~l~~~l~~~~~~~~iil~~~~~--~ 182 (305)
.. .............. ..++||||||++.+ ..+.+..|+.++++...++++|+++... .
T Consensus 103 ~~~~~g~~~~~~~~~l~~--------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK--------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHhccchHHHHHHHHH--------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 00 00000001111111 12579999999987 3556788999998877677777766432 1
Q ss_pred ---ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHhh
Q 021937 183 ---KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL--------CNGDMRKALNILQSTHM 248 (305)
Q Consensus 183 ---~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------~~g~~r~~~~~l~~~~~ 248 (305)
...|.+.+|+ ..+.|++++.+++.+++...+.+.+..++++....+..+ ..||.|.+.+.++.+..
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 2358899998 679999999999999999999999988988877666664 23899999999987765
No 92
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=7.7e-18 Score=142.13 Aligned_cols=184 Identities=16% Similarity=0.222 Sum_probs=132.8
Q ss_pred cccccchHHHHHHHHHHhc----------C-----CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCc--ccEEEeecCCC
Q 021937 53 ADVAAHRDIVDTIDRLTSE----------N-----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASDD 115 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~----------~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~~~~~~~ 115 (305)
++++|.+..++++..+... + ...+++|+||||||||++|+++++.+...+.. ..++.+++...
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 3689988888877665320 1 22369999999999999999999988654432 24666554321
Q ss_pred c------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC---------CHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM---------TKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 116 ~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l---------~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
. ........+.. ..+++|||||++.+ ..+.++.|++.++....+.++|+++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~------------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~ 169 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKR------------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYK 169 (284)
T ss_pred hHhhcccchHHHHHHHHH------------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 0 01111111111 12589999999977 245678899999877667777766543
Q ss_pred C--c---ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHHHHH
Q 021937 181 V--N---KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL--------CNGDMRKALNILQST 246 (305)
Q Consensus 181 ~--~---~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------~~g~~r~~~~~l~~~ 246 (305)
. . .+.+.+.+|+ ..++|++++.+++..++...+.+.+..+++++.+.+.++ ..||.|.+.+.++.+
T Consensus 170 ~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 170 DRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 1 2468999998 679999999999999999999998888999988888775 359999999999877
Q ss_pred hh
Q 021937 247 HM 248 (305)
Q Consensus 247 ~~ 248 (305)
..
T Consensus 250 ~~ 251 (284)
T TIGR02880 250 RL 251 (284)
T ss_pred HH
Confidence 65
No 93
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.4e-17 Score=142.83 Aligned_cols=218 Identities=21% Similarity=0.317 Sum_probs=157.1
Q ss_pred hhcCCCCccccccchHHHHHHHHHH----hcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhH
Q 021937 45 EKYRPQSLADVAAHRDIVDTIDRLT----SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (305)
Q Consensus 45 ~~~~p~~~~~~~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
..|.|.. +.+++..++++...+ .++.+.+++++|+||||||++++.+.+++........++++||....+...
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 4455544 778888888776554 456666699999999999999999999997766555689999988766655
Q ss_pred HHHHHHHhhhcccccCC--------------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCC---ceEEEEecCC--
Q 021937 121 VRQQIQDFASTQSFSFG--------------VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKN---TRFALICNQV-- 181 (305)
Q Consensus 121 ~~~~i~~~~~~~~~~~~--------------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~---~~iil~~~~~-- 181 (305)
+...+-......+..+. ......||++||+|.+.......|+.++...... +.++.++|..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 54444443322221110 2245679999999999877667788887754332 3455555554
Q ss_pred -cccchhhhcce--eEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHhhcc---
Q 021937 182 -NKIIPALQSRC--TRFRFAPLEPVHVTERLKHVIEAE--GLDVTEGGLAALVR---LCNGDMRKALNILQSTHMAS--- 250 (305)
Q Consensus 182 -~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~---~~~g~~r~~~~~l~~~~~~~--- 250 (305)
..+++.+.+++ ..+.|+|++.+|+.+++..++... ...+++++++.++. ..+||.|.++..|..++..+
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 35677888876 458899999999999999998743 33578888777664 44789999999998888644
Q ss_pred --CccCHHHHHhhhCCC
Q 021937 251 --QQITEEAVYLCTGNP 265 (305)
Q Consensus 251 --~~i~~~~v~~~~~~~ 265 (305)
..++.+.++++....
T Consensus 249 ~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 249 GSRKVSEDHVREAQEEI 265 (366)
T ss_pred CCCCcCHHHHHHHHHHh
Confidence 468999988884433
No 94
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9e-18 Score=147.86 Aligned_cols=178 Identities=22% Similarity=0.270 Sum_probs=138.4
Q ss_pred CccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC----
Q 021937 51 SLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD---- 114 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---- 114 (305)
+|.++-|.+..+.+|...+.. .++..++|+||||||||.+|++++.++ ...++.++++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-----~vPf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-----GVPFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-----CCceEeecchhhhcc
Confidence 589999999999988877642 123349999999999999999999998 67777777654
Q ss_pred --CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH-----------HHHHHHHHHHHhc------CCceEE
Q 021937 115 --DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYT------KNTRFA 175 (305)
Q Consensus 115 --~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~------~~~~ii 175 (305)
+...+.+++.+.++.+.. ++|+||||+|.+.+. ....|+..+++.. ..+.+|
T Consensus 263 vSGESEkkiRelF~~A~~~a---------PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNA---------PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred cCcccHHHHHHHHHHHhccC---------CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 345667788777776654 699999999999742 2356888888653 335667
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021937 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 176 l~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
.+||+++.++++|++ || +.+.+.-|+.....++++..++...+.- +-.+..|++.++|-+..-++.|
T Consensus 334 gATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 334 GATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred ecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHH
Confidence 778999999999987 45 6699999999999999999998665543 2336789999998777666555
No 95
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9e-18 Score=149.43 Aligned_cols=187 Identities=20% Similarity=0.245 Sum_probs=138.5
Q ss_pred cCCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
....+|+++-|.++.+..|...+.- ..+..+++|||||||||++|++++++. ...|+.+.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-----~~nFlsvkgp 502 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-----GMNFLSVKGP 502 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----cCCeeeccCH
Confidence 3455899999999999999877641 344559999999999999999999998 6677777665
Q ss_pred C------CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH-----------HHHHHHHHHHHhc--CCceE
Q 021937 114 D------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKYT--KNTRF 174 (305)
Q Consensus 114 ~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~--~~~~i 174 (305)
. +.+...+++.+..+... .++|||+||+|.+... ..+.|+.-++... +++.+
T Consensus 503 EL~sk~vGeSEr~ir~iF~kAR~~---------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ELFSKYVGESERAIREVFRKARQV---------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred HHHHHhcCchHHHHHHHHHHHhhc---------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 4 23344455555554333 2699999999998543 2445566665433 45667
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHhhc
Q 021937 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG-DMRKALNILQSTHMA 249 (305)
Q Consensus 175 il~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~~~ 249 (305)
+.+||+++.+++++.+ |+ +.+++++|+.+...++++..+++.. ++++ .++.|++.+.| +-..+.++||.++..
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 7778999999999999 76 7899999999999999999887655 4444 57888887765 455666777776653
No 96
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=8.9e-17 Score=133.68 Aligned_cols=158 Identities=18% Similarity=0.251 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC-----------CcccEEEeecCC---CcChhHHHHH
Q 021937 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ-----------YHNMILELNASD---DRGIDVVRQQ 124 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~~~ 124 (305)
...+.|.+.+..++.+| ++|+||+|+||+++|..+++.+.|.. ....+..+.+.. ...++.+++.
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 45678889999998888 78999999999999999999998843 122333333222 1356677666
Q ss_pred HHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCHHH
Q 021937 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVH 204 (305)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~ 204 (305)
....... + ..++.+|++||++|.+..+.+++|++.+|++|+++.+|++++....+.++++|||+.+.|+++.
T Consensus 84 ~~~~~~~-p----~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~--- 155 (290)
T PRK05917 84 KKQIWIH-P----YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE--- 155 (290)
T ss_pred HHHHhhC-c----cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh---
Confidence 5554333 2 2334899999999999999999999999999999999999999999999999999999998861
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 021937 205 VTERLKHVIEAEGLDVTEGGLAALVRLCNGDMR 237 (305)
Q Consensus 205 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 237 (305)
...++++.+..++..++|+++
T Consensus 156 ------------~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 156 ------------KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred ------------ccCCCHHHHHHHHHHhCCChh
Confidence 124788888889999999885
No 97
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=1.5e-16 Score=134.09 Aligned_cols=174 Identities=18% Similarity=0.267 Sum_probs=136.0
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCC--------CcccEEEeec-CCCcChhHHHHHHHHhh
Q 021937 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQ--------YHNMILELNA-SDDRGIDVVRQQIQDFA 129 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 129 (305)
.+++.+.+.+..+..+| ++|+|+.|+||++++..+++.+.|.. .+..+..++. ......+.+++.+.+..
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 46788899999988888 67999999999999999999996632 2223444442 12234556666555543
Q ss_pred hcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHH
Q 021937 130 STQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (305)
Q Consensus 130 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (305)
..+. ..++++|++||+++.+.....++|+++++++|+++.+|++++....+.+++++||+.+.|.+++.+++.+++
T Consensus 83 ~~~~----~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 83 FSSF----VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred cCCc----ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 3221 123589999999999999999999999999999999999999889999999999999999999999999888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021937 210 KHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
... + ++++....++..++ ++.+|+..+.
T Consensus 159 ~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~ 186 (299)
T PRK07132 159 LSK----N--KEKEYNWFYAYIFS-NFEQAEKYIN 186 (299)
T ss_pred HHc----C--CChhHHHHHHHHcC-CHHHHHHHHh
Confidence 653 3 66666676777766 5988888764
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.78 E-value=4.7e-17 Score=146.65 Aligned_cols=205 Identities=16% Similarity=0.226 Sum_probs=144.3
Q ss_pred Cccccc-c--chHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHH
Q 021937 51 SLADVA-A--HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (305)
Q Consensus 51 ~~~~~~-g--~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (305)
+|++|+ | +......+..+.... ..+.++|+||+|+|||++++++++++........++.+++... ...+...+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~~ 197 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNAL 197 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHH
Confidence 577755 3 333555666665542 2345999999999999999999999876544455666555431 11111111
Q ss_pred H-----HhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhcce-
Q 021937 126 Q-----DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRC- 192 (305)
Q Consensus 126 ~-----~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~-~~~iil~~~~~~----~l~~~l~~r~- 192 (305)
. .+... + ....+|+|||+|.+.. ..+..|+.+++.... +..++++++... .+.+++.+|+
T Consensus 198 ~~~~~~~~~~~--~-----~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~ 270 (450)
T PRK00149 198 RNNTMEEFKEK--Y-----RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE 270 (450)
T ss_pred HcCcHHHHHHH--H-----hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc
Confidence 1 01000 0 1257999999999864 346678888775533 345666665442 2567889997
Q ss_pred --eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhhCC
Q 021937 193 --TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 193 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~~ 264 (305)
..+.+++|+.+++.++++..+...++.+++++++.|++.+.||+|.+...|..+.. ....||.+.+++++..
T Consensus 271 ~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 271 WGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred CCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999998888765553 3356899988888764
No 99
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.78 E-value=8.5e-17 Score=140.38 Aligned_cols=206 Identities=21% Similarity=0.358 Sum_probs=139.3
Q ss_pred CCCcchhhhcCCCCccccccchHHHHHHHHHHh-----cCCCC--eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 38 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTS-----ENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 38 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~-----~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
....+|.++|+|...+++..++..+.+++.|+. ....+ .++|+||+||||||+++.+++++ .+.+.+.
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew 141 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEW 141 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeee
Confidence 456789999999999999999999999999998 33333 38999999999999999999998 2233332
Q ss_pred ecCC-------------CcC--hhHHHHHHHHhhhcc---c----ccCCCCCceEEEEEeCCCcCCHH-HHHHHHHHHHH
Q 021937 111 NASD-------------DRG--IDVVRQQIQDFASTQ---S----FSFGVKASVKLVLLDEADAMTKD-AQFALRRVIEK 167 (305)
Q Consensus 111 ~~~~-------------~~~--~~~~~~~i~~~~~~~---~----~~~~~~~~~~vliiDe~~~l~~~-~~~~l~~~l~~ 167 (305)
..+. ... ...-...++.+.... . ........+.+|+|||+...... ....|..+|..
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~ 221 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRL 221 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHH
Confidence 2110 000 111111222222111 0 11123344679999998776543 44555555553
Q ss_pred h---cCCceEEEEecCCc--------ccchhh--hcceeEEEecCCCHHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 021937 168 Y---TKNTRFALICNQVN--------KIIPAL--QSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT------EGGLAAL 228 (305)
Q Consensus 168 ~---~~~~~iil~~~~~~--------~l~~~l--~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~l 228 (305)
+ +....|+++|+... .+..++ ..|...+.|.|....-+++.+..++..++...+ ...++.+
T Consensus 222 y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i 301 (634)
T KOG1970|consen 222 YVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELI 301 (634)
T ss_pred HHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHH
Confidence 3 22334444542211 223333 345678999999999999999999998876665 5678899
Q ss_pred HHHcCCCHHHHHHHHHHHhh
Q 021937 229 VRLCNGDMRKALNILQSTHM 248 (305)
Q Consensus 229 ~~~~~g~~r~~~~~l~~~~~ 248 (305)
+..++||+|.|++.||..+.
T Consensus 302 ~~~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 302 CQGSGGDIRSAINSLQLSSS 321 (634)
T ss_pred HHhcCccHHHHHhHhhhhcc
Confidence 99999999999999999854
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.78 E-value=4.6e-17 Score=144.99 Aligned_cols=210 Identities=15% Similarity=0.196 Sum_probs=140.4
Q ss_pred Cccccc-cc--hHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHH
Q 021937 51 SLADVA-AH--RDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (305)
Q Consensus 51 ~~~~~~-g~--~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (305)
+|++|+ |. ......+..+.... ..+.++|+||+|+|||++++++++++........++.+++... ...+...+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHHH
Confidence 466644 43 22344555555442 2335899999999999999999999865543445556554321 01111111
Q ss_pred HHhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhc-CCceEEEEecCCc----ccchhhhcce---eEE
Q 021937 126 QDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQVN----KIIPALQSRC---TRF 195 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~-~~~~iil~~~~~~----~l~~~l~~r~---~~i 195 (305)
..-. ...+.. .-....+|+|||+|.+.. ..+..|+.+++... .+..++++++... .+.+.+.+|+ ..+
T Consensus 186 ~~~~-~~~~~~-~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v 263 (405)
T TIGR00362 186 RNNK-MEEFKE-KYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVV 263 (405)
T ss_pred HcCC-HHHHHH-HHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEE
Confidence 0000 000000 001147999999999864 34667888887643 3456777776432 3567888887 469
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhhCC
Q 021937 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~~ 264 (305)
.+++|+.+++..+++..+...++.+++++++.|++.+.||+|.+...+..+.. ....||.+.+++++..
T Consensus 264 ~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 264 DIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877765543 3356888888777753
No 101
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=1.9e-17 Score=157.04 Aligned_cols=215 Identities=16% Similarity=0.178 Sum_probs=154.1
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC-----cccEEEeecCCC
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~~ 115 (305)
.++.++.+|..+++++|+++.+..+...+.....++++|+||||||||++++.+++.+..... ...++.++....
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l 249 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL 249 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH
Confidence 457777899999999999999999999998888888999999999999999999998844322 234555553221
Q ss_pred ----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH---------HHHHHHHHHHHHhcCCceEEEEecC--
Q 021937 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------DAQFALRRVIEKYTKNTRFALICNQ-- 180 (305)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~~~~~l~~~l~~~~~~~~iil~~~~-- 180 (305)
.......+.+........ ...+.||||||+|.+.. +..+.|...+++. ...+|.+|+.
T Consensus 250 ~a~~~~~g~~e~~l~~i~~~~~-----~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~e 322 (731)
T TIGR02639 250 LAGTKYRGDFEERLKAVVSEIE-----KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYEE 322 (731)
T ss_pred hhhccccchHHHHHHHHHHHHh-----ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHHH
Confidence 112223333333332211 11258999999998852 2345566655532 4566666654
Q ss_pred ---CcccchhhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHh
Q 021937 181 ---VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTH 247 (305)
Q Consensus 181 ---~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~~~ 247 (305)
....++++.+||+.+.+++|+.++..++++..... .++.++++++..+++.++. -|+.++.+++.++
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~ 402 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAG 402 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhh
Confidence 23468899999999999999999999999977654 3567999999999988753 3889999998766
Q ss_pred hcc---------CccCHHHHHhhh
Q 021937 248 MAS---------QQITEEAVYLCT 262 (305)
Q Consensus 248 ~~~---------~~i~~~~v~~~~ 262 (305)
... ..++.++|..++
T Consensus 403 a~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 403 ASFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred hhhhcCcccccccccCHHHHHHHH
Confidence 421 237777776655
No 102
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.78 E-value=2.9e-17 Score=149.66 Aligned_cols=203 Identities=21% Similarity=0.236 Sum_probs=137.8
Q ss_pred cCCCCccccccchHHHHHHHHHHh------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTS------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
....+|+++.|.++.++.+...+. ...+.+++|+||||||||+++++++... ...++.+++..
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~ 123 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSD 123 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCeeeccHHH
Confidence 445589999999999887776654 1223459999999999999999999986 44566655442
Q ss_pred C------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHHHHhc--CCc
Q 021937 115 D------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYT--KNT 172 (305)
Q Consensus 115 ~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~~--~~~ 172 (305)
. .....++..+..+... .++||+|||+|.+... ..+.|+..++... .++
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~---------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKN---------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc---------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 1 1223444444443222 2589999999987532 2234555555432 245
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh
Q 021937 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM 248 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 248 (305)
.+|.+||.++.+++++.+ |+ ..+.++.|+.+++.++++..+...+.. ++..+..+++.+.| +...+.++++.++.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~ 273 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAAL 273 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 667778888999999987 55 679999999999999999888765443 33456788888765 44455555544332
Q ss_pred -----ccCccCHHHHHhhhCC
Q 021937 249 -----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 249 -----~~~~i~~~~v~~~~~~ 264 (305)
....|+.++++.++..
T Consensus 274 ~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 274 LAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred HHHHcCCCCCCHHHHHHHHHH
Confidence 2345999998877754
No 103
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=9.1e-17 Score=143.92 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=137.0
Q ss_pred CCccccccchHHHHHHHHHHhc----------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC----
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE----------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD---- 115 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~----------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~---- 115 (305)
.+|+++.|.+..++.+...... ..+.+++|+||||||||.+|+++++++ ...++.++....
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEEhHHhcccc
Confidence 4688999988888877654221 223459999999999999999999997 455666665431
Q ss_pred --cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH------------HHHHHHHHHHHhcCCceEEEEecCC
Q 021937 116 --RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD------------AQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 116 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~------------~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
.+...+++.+..+... .++||+|||+|.+... ....|+..+++....+.+|.+||..
T Consensus 300 vGese~~l~~~f~~A~~~---------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~ 370 (489)
T CHL00195 300 VGESESRMRQMIRIAEAL---------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI 370 (489)
T ss_pred cChHHHHHHHHHHHHHhc---------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh
Confidence 1223344444333221 2699999999977431 2344566666655566677788999
Q ss_pred cccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC----CHHHHHHHHHHHhh-ccCc
Q 021937 182 NKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLCNG----DMRKALNILQSTHM-ASQQ 252 (305)
Q Consensus 182 ~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g----~~r~~~~~l~~~~~-~~~~ 252 (305)
+.+++++.+ || ..+.++.|+.+++.++++.++.+.+.. .++..++.+++.+.| +++.+.......+. ....
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~ 450 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKRE 450 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 999999976 67 678999999999999999998876532 334557788887755 44444333322222 2345
Q ss_pred cCHHHHHhhhCCCC
Q 021937 253 ITEEAVYLCTGNPL 266 (305)
Q Consensus 253 i~~~~v~~~~~~~~ 266 (305)
++.+++..++....
T Consensus 451 lt~~dl~~a~~~~~ 464 (489)
T CHL00195 451 FTTDDILLALKQFI 464 (489)
T ss_pred cCHHHHHHHHHhcC
Confidence 78887777765443
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.77 E-value=4.6e-17 Score=145.36 Aligned_cols=210 Identities=11% Similarity=0.186 Sum_probs=140.5
Q ss_pred Cccccc-cc--hHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH
Q 021937 51 SLADVA-AH--RDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (305)
Q Consensus 51 ~~~~~~-g~--~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (305)
+|++|+ |. .........+.... ..++++||||+|+|||+|++++++.+........++.+++... ...+...+.
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~~~~~ 180 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMK 180 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHh
Confidence 577777 42 22334555555432 2345999999999999999999999865544445555554321 111111111
Q ss_pred HhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhcC-CceEEEEecCCc----ccchhhhccee---EEE
Q 021937 127 DFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQVN----KIIPALQSRCT---RFR 196 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~-~~~iil~~~~~~----~l~~~l~~r~~---~i~ 196 (305)
.- ....+.........+|+|||++.+.. ..+..|+.+++.... +..++++++... .+.+.+.+|+. .+.
T Consensus 181 ~~-~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~ 259 (440)
T PRK14088 181 EG-KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAK 259 (440)
T ss_pred cc-cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEe
Confidence 00 00000000011257999999998853 345677777776443 345666665332 35678888874 789
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhhC
Q 021937 197 FAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTG 263 (305)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~ 263 (305)
+++|+.+.+.+++++.+...++.+++++++.|++.+.||+|.+...+..+.. ....||.+.+++++.
T Consensus 260 i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~ 330 (440)
T PRK14088 260 LEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLK 330 (440)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876653 235688888776664
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.77 E-value=3.2e-17 Score=145.98 Aligned_cols=207 Identities=15% Similarity=0.189 Sum_probs=142.3
Q ss_pred Cccccc-cc--hHHHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHH
Q 021937 51 SLADVA-AH--RDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (305)
Q Consensus 51 ~~~~~~-g~--~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (305)
+|++|+ |. ......+..+... ...+.++|+||+|+|||+|++++++.+.+.+.. +++++.... ...+
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~--v~yi~~~~f--~~~~ 184 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGK--ILYVRSELF--TEHL 184 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCC--EEEeeHHHH--HHHH
Confidence 677776 42 2233455555532 123459999999999999999999998765433 344433211 1111
Q ss_pred HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhc-CCceEEEEecCC----cccchhhhcce--
Q 021937 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYT-KNTRFALICNQV----NKIIPALQSRC-- 192 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~-~~~~iil~~~~~----~~l~~~l~~r~-- 192 (305)
...+.... ...+. ..-....+++|||++.+.. ..++.|+.+++... ....+|++++.. ..+.+++.+|+
T Consensus 185 ~~~l~~~~-~~~f~-~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~ 262 (445)
T PRK12422 185 VSAIRSGE-MQRFR-QFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW 262 (445)
T ss_pred HHHHhcch-HHHHH-HHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC
Confidence 11111000 00000 0011257999999999863 45777888877542 345677777654 34678999998
Q ss_pred -eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh---h----ccCccCHHHHHhhhC
Q 021937 193 -TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH---M----ASQQITEEAVYLCTG 263 (305)
Q Consensus 193 -~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~---~----~~~~i~~~~v~~~~~ 263 (305)
..+.+++|+.+++..+++..+...++.+++++++.|+....+|+|.+.+.+..++ . ....|+.+.+++++.
T Consensus 263 Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~ 341 (445)
T PRK12422 263 GIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLH 341 (445)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999998774 2 224688888877764
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=1.1e-16 Score=144.99 Aligned_cols=209 Identities=13% Similarity=0.124 Sum_probs=141.9
Q ss_pred CccccccchH---HHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHH
Q 021937 51 SLADVAAHRD---IVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI 125 (305)
Q Consensus 51 ~~~~~~g~~~---~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (305)
+|++|+..+. ....+..++... ..+.++|||++|+|||+|++++++.+........+++++.... ...+...+
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef--~~el~~al 363 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF--TNEFINSI 363 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHHHHHH
Confidence 6788774322 233445554432 2234999999999999999999999854322334455444321 11111111
Q ss_pred HHhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhcC-CceEEEEecCC----cccchhhhcce---eEE
Q 021937 126 QDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTK-NTRFALICNQV----NKIIPALQSRC---TRF 195 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~-~~~iil~~~~~----~~l~~~l~~r~---~~i 195 (305)
..-. ...|.. .-....+|+|||++.+.. ..+..|+.+++.... +..+|++++.. ..+.+.|.+|+ ..+
T Consensus 364 ~~~~-~~~f~~-~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv 441 (617)
T PRK14086 364 RDGK-GDSFRR-RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLIT 441 (617)
T ss_pred Hhcc-HHHHHH-HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceE
Confidence 1000 000000 001258999999999864 346778888886654 45677777654 24678899996 668
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh----ccCccCHHHHHhhhC
Q 021937 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM----ASQQITEEAVYLCTG 263 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~ 263 (305)
.+.+|+.+.+.++|+..+...++.++++++++|++...+|+|.+...|..+.. ....|+.+.++.++.
T Consensus 442 ~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~ 513 (617)
T PRK14086 442 DVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLR 513 (617)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876653 235588877776664
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.76 E-value=1.4e-16 Score=140.51 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=132.0
Q ss_pred CCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
..++++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++.+ ...++.+++....
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-----~~~~i~v~~~~l~ 202 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSELV 202 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh-----CCCEEEeehHHHh
Confidence 3678899999999988887632 234459999999999999999999987 3456666554321
Q ss_pred ------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh-----cCCceE
Q 021937 117 ------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRF 174 (305)
Q Consensus 117 ------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~i 174 (305)
....++..+..+.. ..+++|+|||+|.+. .+.+..+..++... ..++.+
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~---------~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 203 QKFIGEGARLVRELFELARE---------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred HhhccchHHHHHHHHHHHHh---------cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 11222222222211 226899999999983 33445566666432 235678
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhhc-
Q 021937 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHMA- 249 (305)
Q Consensus 175 il~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~- 249 (305)
|+++|..+.+++++.+ |+ ..+.+++|+.+++.++++.++....+.- +..+..+++.+.| +...+..++..++..
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l~~eA~~~a 352 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAICTEAGMFA 352 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8888998889999876 66 6799999999999999998876554321 1336777877765 334444444444331
Q ss_pred ----cCccCHHHHHhhhC
Q 021937 250 ----SQQITEEAVYLCTG 263 (305)
Q Consensus 250 ----~~~i~~~~v~~~~~ 263 (305)
...|+.+++.+++.
T Consensus 353 ~~~~~~~i~~~d~~~A~~ 370 (389)
T PRK03992 353 IRDDRTEVTMEDFLKAIE 370 (389)
T ss_pred HHcCCCCcCHHHHHHHHH
Confidence 23466666665553
No 108
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.76 E-value=4.1e-16 Score=130.26 Aligned_cols=172 Identities=20% Similarity=0.344 Sum_probs=132.3
Q ss_pred cchHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC-------------------cccEEEeecCC-C
Q 021937 57 AHRDIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY-------------------HNMILELNASD-D 115 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~-------------------~~~~~~~~~~~-~ 115 (305)
.++..++.+.+.+..++.+| ++|+|| .||+++|..+++.+.|.+. ...+..+.... .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 47888999999999999888 899996 6899999999999987531 12333333322 2
Q ss_pred cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEE
Q 021937 116 RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRF 195 (305)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i 195 (305)
..++.+++.+..+...+ ..++++|+|||++|.+.....++|++.+|++++++.+|+++++...+.++++|||+.+
T Consensus 84 I~idqIR~l~~~~~~~p-----~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 84 IKTDTIRELVKNFSQSG-----YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCHHHHHHHHHHHhhCc-----ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 34677777666654432 2334799999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021937 196 RFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
+|++ +.+++.+++. +.| ++.+....++.. .|++..++..+
T Consensus 159 ~f~~-~~~~~~~~L~----~~g--~~~~~a~~la~~-~~s~~~A~~l~ 198 (290)
T PRK07276 159 HFPK-NEAYLIQLLE----QKG--LLKTQAELLAKL-AQSTSEAEKLA 198 (290)
T ss_pred eCCC-cHHHHHHHHH----HcC--CChHHHHHHHHH-CCCHHHHHHHh
Confidence 9976 6666666664 345 444444445544 46898888877
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=5e-17 Score=155.26 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=144.3
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC-----cccEEEeecCC-
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASD- 114 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~- 114 (305)
.++.++.+|..+++++|+++.+..+...+.....++++|+||||||||++++.+++.+..... ...++.++...
T Consensus 175 ~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 175 TDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred hhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 346667789999999999999999999998988888999999999999999999998843321 12334333321
Q ss_pred ---CcCh----hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----HH---HHHHHHHHHHhcCCceEEEEec
Q 021937 115 ---DRGI----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----DA---QFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 115 ---~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~---~~~l~~~l~~~~~~~~iil~~~ 179 (305)
.... ..++..+...... ..+.||||||+|.+.. .. .+.|...++.. ...+|.+|+
T Consensus 255 ~ag~~~~ge~e~~lk~ii~e~~~~--------~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 255 QAGASVKGEFENRLKSVIDEVKAS--------PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred hcccccchHHHHHHHHHHHHHHhc--------CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 1122 2344444433221 1268999999999963 12 22455555533 456666665
Q ss_pred C-----CcccchhhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHH
Q 021937 180 Q-----VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQ 244 (305)
Q Consensus 180 ~-----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~ 244 (305)
. ....+++|.+||+.+.+++|+.++..++++..... .++.++++++..+++.+.+ -|..++.+++
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlld 404 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLD 404 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHH
Confidence 4 23578999999999999999999999997665543 3678899999999998864 5889999998
Q ss_pred HHhh
Q 021937 245 STHM 248 (305)
Q Consensus 245 ~~~~ 248 (305)
.+++
T Consensus 405 ea~a 408 (852)
T TIGR03345 405 TACA 408 (852)
T ss_pred HHHH
Confidence 8776
No 110
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.75 E-value=7.2e-17 Score=142.48 Aligned_cols=206 Identities=19% Similarity=0.265 Sum_probs=134.7
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 44 VEKYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 44 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
.++..+.+|+++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++.+ ...++.+
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el-----~~~fi~V 248 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET-----SATFLRV 248 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCCEEEE
Confidence 4555667899999999999988887741 233459999999999999999999987 3345655
Q ss_pred ecCCCc------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHh-----
Q 021937 111 NASDDR------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY----- 168 (305)
Q Consensus 111 ~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~----- 168 (305)
.++... ....++..+..+.. ..+++|+|||+|.+.. +.+..+..++...
T Consensus 249 ~~seL~~k~~Ge~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 249 VGSELIQKYLGDGPKLVRELFRVAEE---------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ecchhhhhhcchHHHHHHHHHHHHHh---------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 544321 11222333322211 2368999999987742 2234444554432
Q ss_pred cCCceEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Q 021937 169 TKNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQ 244 (305)
Q Consensus 169 ~~~~~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~ 244 (305)
..++.+|++||..+.+++++.+ |+ ..+.|++|+.+++.+++..++.+..+.-+ ..++.++..+.| +...+.+++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d-vdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED-VDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC-cCHHHHHHhcCCCCHHHHHHHHH
Confidence 3467788899999999998875 56 67999999999999999988776554221 234556655543 3333444444
Q ss_pred HHhh-----ccCccCHHHHHhhhCC
Q 021937 245 STHM-----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 245 ~~~~-----~~~~i~~~~v~~~~~~ 264 (305)
.++. ....|+.+++.+++..
T Consensus 399 eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 399 EAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHhcCCccCHHHHHHHHHH
Confidence 4433 2245788877766544
No 111
>CHL00176 ftsH cell division protein; Validated
Probab=99.75 E-value=1.5e-16 Score=146.81 Aligned_cols=200 Identities=21% Similarity=0.274 Sum_probs=137.5
Q ss_pred CCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc-
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR- 116 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 116 (305)
.+|+++.|.++..+.+...+.. ..+.+++|+||||||||++|++++.+. ...++.++++...
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-----~~p~i~is~s~f~~ 254 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSISGSEFVE 254 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeeeccHHHHHH
Confidence 4789999999888887776531 123459999999999999999999987 4456666554321
Q ss_pred -----ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHH---HHh--cCCceEE
Q 021937 117 -----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVI---EKY--TKNTRFA 175 (305)
Q Consensus 117 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l---~~~--~~~~~ii 175 (305)
....++..+..+. ...++||+|||+|.+.. +....+..++ +.. ..++.+|
T Consensus 255 ~~~g~~~~~vr~lF~~A~---------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAK---------ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred HhhhhhHHHHHHHHHHHh---------cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 1222333333332 22368999999998842 2233444444 332 2345677
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhh---
Q 021937 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHM--- 248 (305)
Q Consensus 176 l~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~--- 248 (305)
.+||..+.+++++.+ |+ ..+.+++|+.+++.++++.++..... .++..+..+++.+.| +.+.+.+++..++.
T Consensus 326 aaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 326 AATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred EecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 778888888998886 45 67999999999999999999876443 345567889998887 66666666655443
Q ss_pred --ccCccCHHHHHhhhCC
Q 021937 249 --ASQQITEEAVYLCTGN 264 (305)
Q Consensus 249 --~~~~i~~~~v~~~~~~ 264 (305)
....++.+++++++.+
T Consensus 405 r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 405 RRKKATITMKEIDTAIDR 422 (638)
T ss_pred HhCCCCcCHHHHHHHHHH
Confidence 2245888888877643
No 112
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.75 E-value=6.7e-17 Score=139.67 Aligned_cols=206 Identities=17% Similarity=0.261 Sum_probs=148.5
Q ss_pred Ccccccc---chHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC--hhHHHH
Q 021937 51 SLADVAA---HRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--IDVVRQ 123 (305)
Q Consensus 51 ~~~~~~g---~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 123 (305)
+|++|+. +.........+.... ..+.++|||++|.|||||++++++.....+....+++++...... ...++.
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh
Confidence 4555554 444444555555543 245599999999999999999999998887777777766543210 111111
Q ss_pred -HHHHhhhcccccCCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHHhcCCc-eEEEEecCCc----ccchhhhcce---
Q 021937 124 -QIQDFASTQSFSFGVKASVKLVLLDEADAMTK--DAQFALRRVIEKYTKNT-RFALICNQVN----KIIPALQSRC--- 192 (305)
Q Consensus 124 -~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~-~iil~~~~~~----~l~~~l~~r~--- 192 (305)
.+..+... + ...+++|||++.+.. ..++.|+.+++...... .++++++..+ .+.+++++|+
T Consensus 165 ~~~~~Fk~~--y------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G 236 (408)
T COG0593 165 NEMEKFKEK--Y------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG 236 (408)
T ss_pred hhHHHHHHh--h------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce
Confidence 11111111 1 158999999999875 45888999888765443 6777775543 3568899986
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc----cCccCHHHHHhhhCC
Q 021937 193 TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGN 264 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~~ 264 (305)
..+.+.+|+.+....++...+...++.++++++..+++....|+|.+...+..+... ...||.+.+.+++..
T Consensus 237 l~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~ 312 (408)
T COG0593 237 LVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKD 312 (408)
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999998766653 235777777766633
No 113
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.74 E-value=3.4e-16 Score=137.39 Aligned_cols=201 Identities=20% Similarity=0.253 Sum_probs=133.0
Q ss_pred CCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
..+|+++.|.+..++.++..+.. ..+.+++|+||||||||++++++++.+ ...++.+.+...
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l-----~~~fi~i~~s~l 215 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT-----TATFIRVVGSEF 215 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHH
Confidence 34788999999999988887641 134459999999999999999999987 344555544321
Q ss_pred ------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHh-----cCCce
Q 021937 116 ------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-----TKNTR 173 (305)
Q Consensus 116 ------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~-----~~~~~ 173 (305)
.+...+++.+..+. ...++||+|||+|.+.. ..+..+..++... ..++.
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~---------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~ 286 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLAR---------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 286 (398)
T ss_pred HHHhcchhHHHHHHHHHHHH---------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE
Confidence 11122222222221 12368999999998732 2333444544432 23567
Q ss_pred EEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHhhc
Q 021937 174 FALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALNILQSTHMA 249 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~ 249 (305)
+|++||.++.+++++.+ |+ ..+.|++|+.+++..+++.++.+.++.- +-.+..+++.+.| +...+.++++.++..
T Consensus 287 VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sgaDI~~l~~eA~~~ 365 (398)
T PTZ00454 287 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAADIAAICQEAGMQ 365 (398)
T ss_pred EEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88889999999999876 66 6699999999999999998887666432 2235677777754 455555556555442
Q ss_pred -----cCccCHHHHHhhhCC
Q 021937 250 -----SQQITEEAVYLCTGN 264 (305)
Q Consensus 250 -----~~~i~~~~v~~~~~~ 264 (305)
...++.+++.+++..
T Consensus 366 A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 366 AVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred HHHcCCCccCHHHHHHHHHH
Confidence 234777776665543
No 114
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=1.1e-15 Score=124.40 Aligned_cols=204 Identities=17% Similarity=0.136 Sum_probs=143.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCC-----------------cccEEEeecC-CCcChhHHHHHHHHhhhcccccCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQY-----------------HNMILELNAS-DDRGIDVVRQQIQDFASTQSFSFG 137 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----------------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~ 137 (305)
.++|+||.|+||..+|.++++.+.|... ...+..+... .....+.+++....+.... +.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s-~e-- 85 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS-VE-- 85 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc-hh--
Confidence 3899999999999999999999977531 1123332222 1235666676665554221 11
Q ss_pred CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCC----------CHHHHHH
Q 021937 138 VKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPL----------EPVHVTE 207 (305)
Q Consensus 138 ~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~----------~~~~~~~ 207 (305)
..+++|++||++|.+.....++|++.+|++|+++.++++++....+.++++|||+.+.|+++ +..++.+
T Consensus 86 -~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~ 164 (261)
T PRK05818 86 -SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQY 164 (261)
T ss_pred -cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHHH
Confidence 12479999999999999999999999999999999999999999999999999999999888 4444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc-CccCHHHHHhhhCCCChhhHHHHHHHHH-cccHHHH
Q 021937 208 RLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS-QQITEEAVYLCTGNPLPKDIEQISYWLL-NESFADS 285 (305)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-~~i~~~~v~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 285 (305)
.+... .+ +++ .++...+|+...++..++.+.... ..++...+...+..-....+..+...+. ..|+++-
T Consensus 165 ~L~~~---~~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l~~~~~~~~k 235 (261)
T PRK05818 165 ILLSF---YS--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLIPTVDPEKK 235 (261)
T ss_pred HHHHc---cC--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCchHH
Confidence 44322 12 333 677788999999999998652111 2245555666666666666665555554 3566666
Q ss_pred HHHHHHH
Q 021937 286 FKRIQNL 292 (305)
Q Consensus 286 ~~~l~~l 292 (305)
-..+.-|
T Consensus 236 ~~~~~~~ 242 (261)
T PRK05818 236 SKLYNLL 242 (261)
T ss_pred HHHHHHH
Confidence 5555555
No 115
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=1.8e-15 Score=129.57 Aligned_cols=145 Identities=25% Similarity=0.381 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCC--------------------cccEEEeecCC----
Q 021937 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQY--------------------HNMILELNASD---- 114 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------------~~~~~~~~~~~---- 114 (305)
...+.+... .++.+| ++|+||+|+|||++|+.+++.+.|... ...+..+.+..
T Consensus 8 ~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 8 EQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred HHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 344444444 346666 899999999999999999999987432 13455565422
Q ss_pred ------CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhh
Q 021937 115 ------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPAL 188 (305)
Q Consensus 115 ------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l 188 (305)
...++.+++........ + ..++++|+++|+++.++...++.|++.+++++.++.+|++++....+.+.+
T Consensus 86 ~g~~~~~I~id~iR~l~~~~~~~-p----~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNVYLT-S----VRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred ccccCCCcCHHHHHHHHHHHhhC-c----ccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH
Confidence 13467777765554332 2 223479999999999999999999999999988888999999999999999
Q ss_pred hcceeEEEecCCCHHHHHHHHHH
Q 021937 189 QSRCTRFRFAPLEPVHVTERLKH 211 (305)
Q Consensus 189 ~~r~~~i~~~~~~~~~~~~~l~~ 211 (305)
.+||+.+.|++++.+++.+++..
T Consensus 161 ~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHhhhhcCCCCCHHHHHHHHHh
Confidence 99999999999999999999965
No 116
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.72 E-value=1.1e-15 Score=126.89 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=99.5
Q ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec------------CCcccchhhhcceeEEEecCCCHHHHHHHH
Q 021937 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (305)
++|+||||+|.|+-+...+|.+.++..- ...+|+++| .+.-++.++..|..++...|++.+++++++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 4599999999999999999999998654 345556664 234678899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhh-----ccCccCHHHHHhhhC
Q 021937 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHM-----ASQQITEEAVYLCTG 263 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~ 263 (305)
+.++..+++.+++++++.++... .-++|.++++|.-+.. ..+.+..++|+.+..
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 99999999999999999999875 4689999999964433 234688888876653
No 117
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.1e-16 Score=129.41 Aligned_cols=232 Identities=16% Similarity=0.162 Sum_probs=144.4
Q ss_pred CCccccccchHHHHHHHHHHh----------c--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc-
Q 021937 50 QSLADVAAHRDIVDTIDRLTS----------E--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR- 116 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~----------~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 116 (305)
..|+++.|..+.++-|++.+- + .+...++++||||+|||.||++++.++ ...|+.++.+...
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-----~tTFFNVSsstltS 283 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-----GTTFFNVSSSTLTS 283 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-----cCeEEEechhhhhh
Confidence 468899999999988887753 2 233449999999999999999999998 5678877766421
Q ss_pred ----ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH------------HHHHHHHHHHHHhc-----CCceEE
Q 021937 117 ----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEKYT-----KNTRFA 175 (305)
Q Consensus 117 ----~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~~-----~~~~ii 175 (305)
..+.+...+.+.+.... +.+|||||+|.+.. .....|+-.++... .+++++
T Consensus 284 KwRGeSEKlvRlLFemARfyA--------PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYA--------PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred hhccchHHHHHHHHHHHHHhC--------CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 22334444444444332 68999999999842 23456777777432 133444
Q ss_pred E-EecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHhhcc--
Q 021937 176 L-ICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMR-KALNILQSTHMAS-- 250 (305)
Q Consensus 176 l-~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r-~~~~~l~~~~~~~-- 250 (305)
+ +||-+..++.++++|+ ..+.++-|+.+....+|+..+..... -++-.++.|++.+.|--. .+.+.|..++..+
T Consensus 356 LAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mR 434 (491)
T KOG0738|consen 356 LAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREASMMAMR 434 (491)
T ss_pred EeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 4 4688889999999999 77899999999999888876653321 233345667776655322 2333444443321
Q ss_pred ---CccCHHHHHhhhC-----CCChhhHHHHHHHHHcccHHHHHHHHHHHHHH
Q 021937 251 ---QQITEEAVYLCTG-----NPLPKDIEQISYWLLNESFADSFKRIQNLSFI 295 (305)
Q Consensus 251 ---~~i~~~~v~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~ 295 (305)
..++.+.+..+.. .....++...++.+...-...-+..+.+++..
T Consensus 435 R~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~e 487 (491)
T KOG0738|consen 435 RKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDE 487 (491)
T ss_pred HHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHH
Confidence 2244444443332 23334555555555554443444444444443
No 118
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.2e-16 Score=136.93 Aligned_cols=236 Identities=15% Similarity=0.140 Sum_probs=152.7
Q ss_pred CCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
.+|+++-+.+++..+|.-.+.. ..+..++||||||||||.+|+++|++. ..+|+.+.++...
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----g~NFisVKGPELl 582 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----GANFISVKGPELL 582 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----cCceEeecCHHHH
Confidence 3678888888888888776542 234459999999999999999999997 6788888776532
Q ss_pred C--hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHhc--CCceEEEEecCC
Q 021937 117 G--IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYT--KNTRFALICNQV 181 (305)
Q Consensus 117 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~--~~~~iil~~~~~ 181 (305)
+ ..+-...+.+.... ...+-++|||+||+|.|.+ ...+.|+.-++... ..+.+|.+||++
T Consensus 583 NkYVGESErAVR~vFqR-----AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP 657 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQR-----ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP 657 (802)
T ss_pred HHHhhhHHHHHHHHHHH-----hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC
Confidence 1 12222223333222 2333479999999999953 24567777777543 345566678999
Q ss_pred cccchhhhcc--e-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcC--C----CHHHHHHHHHHHhhcc-
Q 021937 182 NKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCN--G----DMRKALNILQSTHMAS- 250 (305)
Q Consensus 182 ~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~--g----~~r~~~~~l~~~~~~~- 250 (305)
+.+++++.+- + ..+.+..|+.++..++|+...+..+..+++++ ++.|++... | |+-.++...-.++...
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 9999999874 4 56888999999999999998875555555543 566775432 3 4333332222221110
Q ss_pred -CccCHHHHHhh----hCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHH
Q 021937 251 -QQITEEAVYLC----TGNPLPKDIEQISYWLLNESFADSFKRIQNLSFI 295 (305)
Q Consensus 251 -~~i~~~~v~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~ 295 (305)
..++...-.-. --...+.++..-++.+.....++-...++.|...
T Consensus 738 ~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~ 787 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKS 787 (802)
T ss_pred HhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhh
Confidence 01111111111 1134556788888888888878777777777644
No 119
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-15 Score=133.09 Aligned_cols=202 Identities=20% Similarity=0.222 Sum_probs=136.6
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHh-----------cCCC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021937 44 VEKYRPQSLADVAAHRDIVDTIDRLTS-----------ENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 44 ~~~~~p~~~~~~~g~~~~~~~l~~~l~-----------~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
++......|+++.|.++.+++|.+... +++. ..++|+||||+|||.||++++-+. ..+|+...
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----~VPFF~~s 369 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----GVPFFYAS 369 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----CCCeEecc
Confidence 344455679999999999988887764 2333 349999999999999999999987 66777776
Q ss_pred cCCC------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHhcCC--c
Q 021937 112 ASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTKN--T 172 (305)
Q Consensus 112 ~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~~~--~ 172 (305)
++.. .+...++.++..+.... ++||||||+|.+.. ...+.|+--++...++ .
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~A---------PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKARA---------PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhcC---------CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 6653 24556666666654443 69999999998852 1234455455544433 4
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHH-
Q 021937 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG----DMRKALNIL- 243 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g----~~r~~~~~l- 243 (305)
.+|.+||.++.+++++.+ || ..+.++.|+..-+.+|+..+..+-. ++++ ....|++-+.| |+..++|..
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~iiARGT~GFsGAdLaNlVNqAA 518 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKIIARGTPGFSGADLANLVNQAA 518 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHhccCCCCCchHHHHHHHHHHH
Confidence 455567888999999987 45 6799999999999999999887543 3322 23556776655 333344332
Q ss_pred -HHHhhccCccCHHHHHhh
Q 021937 244 -QSTHMASQQITEEAVYLC 261 (305)
Q Consensus 244 -~~~~~~~~~i~~~~v~~~ 261 (305)
..+...++.++..+++.+
T Consensus 519 lkAa~dga~~VtM~~LE~a 537 (752)
T KOG0734|consen 519 LKAAVDGAEMVTMKHLEFA 537 (752)
T ss_pred HHHHhcCcccccHHHHhhh
Confidence 122224456777766543
No 120
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.70 E-value=1.5e-15 Score=128.14 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=78.8
Q ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC------------CcccchhhhcceeEEEecCCCHHHHHHHH
Q 021937 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ------------VNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~------------~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (305)
++|+||||+|.|+-+....|-+.++..- .+.+|++||+ +..++.+|.+|+.++...|++.+++.+++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 4599999999999999999999998654 4456666652 23567899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHh
Q 021937 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTH 247 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 247 (305)
..+++.+++.+++++++.+.+.. ..++|.|++++..+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999998765 578999999886553
No 121
>PRK05907 hypothetical protein; Provisional
Probab=99.69 E-value=1.1e-14 Score=123.63 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=168.0
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCce
Q 021937 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142 (305)
Q Consensus 63 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 142 (305)
..+.+.++.+. |.++++|..- ....+.+.+.+..... ..+++... ..+ + +.....+.+|... +
T Consensus 8 ~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~----~~fdg~~~-~~~---~-ii~~aetlPfFae----r 70 (311)
T PRK05907 8 KDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK----SEFDGQGL-LQQ---E-LLSWTEHFGLFAS----Q 70 (311)
T ss_pred HHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc----ceecCCCC-CHH---H-HHHHHhcCCcccC----e
Confidence 44555677777 8899999987 5556666555432221 22333331 222 2 3333444444433 7
Q ss_pred EEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcc---cchhhhcceeE----EEecCCCHHHHHHHHHHHHHH
Q 021937 143 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNK---IIPALQSRCTR----FRFAPLEPVHVTERLKHVIEA 215 (305)
Q Consensus 143 ~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~---l~~~l~~r~~~----i~~~~~~~~~~~~~l~~~~~~ 215 (305)
++|++.+.+.+.....+.|..+++++++.+.+++.+...+. +.+.+.. ... +.++++...++..|+.+.+++
T Consensus 71 RlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~Wi~~~~~~ 149 (311)
T PRK05907 71 ETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQLLIQRAKE 149 (311)
T ss_pred EEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhh-cceeccccccCCCCHHHHHHHHHHHHHH
Confidence 88888888777766778999999998886555533322221 2233332 433 489999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhc---cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHH
Q 021937 216 EGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMA---SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQN 291 (305)
Q Consensus 216 ~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~---~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 291 (305)
.|..+++++++.++..+ +||+..+.+.+++++.. .+.||.++|+.++......+++++++++..++..+|+..++.
T Consensus 150 ~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~Al~il~~ 229 (311)
T PRK05907 150 LGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVEGHSLLRS 229 (311)
T ss_pred cCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999 69999999999998875 346999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHhhc
Q 021937 292 LSFI-IRLVLFVLL 304 (305)
Q Consensus 292 l~~~-~~~~~~~~~ 304 (305)
|..+ +..|+.+|.
T Consensus 230 Ll~~~ge~p~~ILa 243 (311)
T PRK05907 230 LLSDMGEDPLGIIA 243 (311)
T ss_pred HHHhcCCChHHHHH
Confidence 9999 888887764
No 122
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.69 E-value=1.8e-15 Score=132.82 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=130.1
Q ss_pred CCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
...++++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++.+ ...++.+.+...
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l-----~~~~~~v~~~~l 192 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSEL 192 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC-----CCCEEecchHHH
Confidence 34678999999999999887642 123459999999999999999999987 334444443221
Q ss_pred c--ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh-----cCCceEEEE
Q 021937 116 R--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFALI 177 (305)
Q Consensus 116 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~iil~ 177 (305)
. ........+....... ....+.||+|||+|.+. ...+..+..++... ..++.+|++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a-----~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~t 267 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELA-----KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAA 267 (364)
T ss_pred HHHhhhHHHHHHHHHHHHH-----HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence 0 0011111111111111 11225899999999883 23345566665432 246778888
Q ss_pred ecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHhh-----
Q 021937 178 CNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHM----- 248 (305)
Q Consensus 178 ~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~~~~~----- 248 (305)
+|..+.+++++.+ |+ ..+.++.|+.++..++++.++......- +..+..+++.+.|- .+.+.+++..+..
T Consensus 268 tn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 268 TNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred cCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 8988888898875 55 6799999999999999988776544321 12367788877653 3344444443333
Q ss_pred ccCccCHHHHHhhhC
Q 021937 249 ASQQITEEAVYLCTG 263 (305)
Q Consensus 249 ~~~~i~~~~v~~~~~ 263 (305)
....|+.+++.+++.
T Consensus 347 ~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 347 ERDYVTMDDFIKAVE 361 (364)
T ss_pred CCCccCHHHHHHHHH
Confidence 224577777776654
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.69 E-value=2e-15 Score=135.18 Aligned_cols=167 Identities=20% Similarity=0.252 Sum_probs=113.0
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----Ccc
Q 021937 44 VEKYRPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHN 105 (305)
Q Consensus 44 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~ 105 (305)
.+.+.+.+|+++.|.+..++.++..+.. ..+.+++||||||||||++++++++.+.... ...
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 3455667899999999999988887641 1334599999999999999999999985431 122
Q ss_pred cEEEeecCCC------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH------------HHHHHHHHHHH
Q 021937 106 MILELNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD------------AQFALRRVIEK 167 (305)
Q Consensus 106 ~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~------------~~~~l~~~l~~ 167 (305)
.++.+..... .....++..+..+.... ....+.||||||+|.+... ....|+..++.
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a-----~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKA-----SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHh-----hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 3443333221 11112222222222111 1223689999999988421 12456666664
Q ss_pred hc--CCceEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHH
Q 021937 168 YT--KNTRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEA 215 (305)
Q Consensus 168 ~~--~~~~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~ 215 (305)
.. .++.+|.+||..+.+++++.+ |+ ..++|++|+.+++.++++.++..
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 33 356777788999999999987 77 66999999999999999988754
No 124
>PRK05629 hypothetical protein; Validated
Probab=99.68 E-value=1.1e-14 Score=125.47 Aligned_cols=220 Identities=12% Similarity=0.065 Sum_probs=172.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCC-CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCc
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~ 152 (305)
.+.++|||+..--.-.....+.+.+...+ ....+..+++.+.. .. +.+ ... ..++..+ +++|++++.+.
T Consensus 6 ~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~---~l~-~~~-t~slF~~----~rlV~v~~~~~ 75 (318)
T PRK05629 6 PPVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QG---ELL-DAL-SPSLFGE----DRVIVLTNMEQ 75 (318)
T ss_pred CceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HH---HHH-Hhh-CcCccCC----ceEEEEeChHh
Confidence 34589999886555555555555554433 34567777765432 22 222 333 3333333 79999999887
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEecCCc---ccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 021937 153 MTKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALV 229 (305)
Q Consensus 153 l~~~~~~~l~~~l~~~~~~~~iil~~~~~~---~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 229 (305)
..+...+.+..++..+++.+.+|+++.... .+.+.+...+..+.+.++...++..|+...+.+.|..+++++++.++
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~ 155 (318)
T PRK05629 76 AGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALL 155 (318)
T ss_pred cChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 766667788889988887777777764332 23346666778899999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHhhc-cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 230 RLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 230 ~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
..+++|+..+.+.+++++.. .+.||.++|++++......+++++++++..++..+|+..++.|...+..|+.++
T Consensus 156 ~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il 230 (318)
T PRK05629 156 EGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALA 230 (318)
T ss_pred HHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 99999999999999998764 457999999999999999999999999999999999999999999988777664
No 125
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=8.9e-15 Score=139.33 Aligned_cols=183 Identities=19% Similarity=0.231 Sum_probs=125.8
Q ss_pred CCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
..+|+++.|.+..++.|...+.. ..+.+++|+||||||||++|+++++++ ...++.+.++..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~-----~~~fi~v~~~~l 523 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES-----GANFIAVRGPEI 523 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHH
Confidence 34788999999999988887641 123349999999999999999999997 456777765432
Q ss_pred ------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH------------HHHHHHHHHHHH--hcCCceEE
Q 021937 116 ------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------DAQFALRRVIEK--YTKNTRFA 175 (305)
Q Consensus 116 ------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~--~~~~~~ii 175 (305)
.....++..+..+.. ..++||||||+|.+.+ ...+.|+..++. ...++.+|
T Consensus 524 ~~~~vGese~~i~~~f~~A~~---------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQ---------AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHh---------cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 122233444433322 2269999999998742 223456666663 23456777
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCH-HHHHHHHHHHh
Q 021937 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTE-GGLAALVRLCNGDM-RKALNILQSTH 247 (305)
Q Consensus 176 l~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g~~-r~~~~~l~~~~ 247 (305)
.+||.++.+++++.+ || ..+++++|+.+++.++++....+.. ++. ..++.+++.+.|-- ..+.++++.++
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~--~~~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP--LAEDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788999999999986 77 7799999999999999987665433 333 34778888887633 33334444444
No 126
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.67 E-value=2.4e-15 Score=127.15 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=108.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDE 149 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe 149 (305)
.++||||||||||.+++++++++ ...++.++.... .....+++.+..+..... .+..++||||||
T Consensus 150 gllL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~----~~~aPcVLFIDE 220 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIK----KKGKMSCLFIND 220 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhh----ccCCCeEEEEeh
Confidence 38999999999999999999998 556777776542 234455666655543221 122379999999
Q ss_pred CCcCCHH-------H-----HHHHHHHHHH--------------hcCCceEEEEecCCcccchhhhc--ceeEEEecCCC
Q 021937 150 ADAMTKD-------A-----QFALRRVIEK--------------YTKNTRFALICNQVNKIIPALQS--RCTRFRFAPLE 201 (305)
Q Consensus 150 ~~~l~~~-------~-----~~~l~~~l~~--------------~~~~~~iil~~~~~~~l~~~l~~--r~~~i~~~~~~ 201 (305)
+|.+... . ...|+.+++. ....+.||.++|+++.++++|++ |+..+ +..|+
T Consensus 221 IDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~lPd 299 (413)
T PLN00020 221 LDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPT 299 (413)
T ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCCCC
Confidence 9987531 1 2456666653 23456788889999999999998 77443 45799
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 021937 202 PVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD 235 (305)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 235 (305)
.+++.++++.++++.+ ++...+..|+...+|-
T Consensus 300 ~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 300 REDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred HHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 9999999999888765 5678888899988875
No 127
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.67 E-value=1.2e-14 Score=126.04 Aligned_cols=220 Identities=18% Similarity=0.218 Sum_probs=166.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCC-CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l 153 (305)
|.++|||+..--+...++.+.+.+..+. ....+..+++.+. +...+.+.. ....++..+ +++|+|++++.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~---~~~~~~~~~-~~t~pff~~----~rlVvv~~~~~~ 73 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA---DQAIQALNE-AMTPPFGSG----GRLVWLKNSPLC 73 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc---hHHHHHHHH-hcCCCCCCC----ceEEEEeCchhh
Confidence 5689999998888888888877663322 1234444444332 223344433 334444433 799999997654
Q ss_pred ---CHHHHHHHHHHHHHhcCCceEEEEecC-C---cccchhhhcceeEEEecCC---CHHHHHHHHHHHHHHcCCCCCHH
Q 021937 154 ---TKDAQFALRRVIEKYTKNTRFALICNQ-V---NKIIPALQSRCTRFRFAPL---EPVHVTERLKHVIEAEGLDVTEG 223 (305)
Q Consensus 154 ---~~~~~~~l~~~l~~~~~~~~iil~~~~-~---~~l~~~l~~r~~~i~~~~~---~~~~~~~~l~~~~~~~~~~~~~~ 223 (305)
.++..+.|..+++.+++.+.+|+++.. . .+..+.+...+.+..|.++ +.+++..|+...+.+.|..++++
T Consensus 74 ~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 153 (326)
T PRK07452 74 QGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPE 153 (326)
T ss_pred ccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHH
Confidence 566778899999988888888776432 2 2344556666666666554 55779999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhc----cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Q 021937 224 GLAALVRLCNGDMRKALNILQSTHMA----SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLV 299 (305)
Q Consensus 224 ~~~~l~~~~~g~~r~~~~~l~~~~~~----~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 299 (305)
+++.|+..+++|++.+.+.+++++.. .+.|+.++|++++... ..+++++++++..++..+|+..++.|..++..|
T Consensus 154 a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~~~g~~p 232 (326)
T PRK07452 154 AAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLLDANEPA 232 (326)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHHHCCCcH
Confidence 99999999999999999999999885 2369999999999886 578999999999999999999999999988877
Q ss_pred HHhh
Q 021937 300 LFVL 303 (305)
Q Consensus 300 ~~~~ 303 (305)
+.++
T Consensus 233 ~~il 236 (326)
T PRK07452 233 LRIV 236 (326)
T ss_pred HHHH
Confidence 7665
No 128
>PRK07914 hypothetical protein; Reviewed
Probab=99.67 E-value=2.7e-14 Score=123.21 Aligned_cols=219 Identities=13% Similarity=0.094 Sum_probs=172.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhC-CC-CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCc
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYG-AQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~ 152 (305)
|.++|+|+.-.-.......+.+.+.. .+ ....+..+++.+... .+ +.+.. ..++..+ +++|++++...
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~----~~-i~~~~-t~plF~~----rRlV~v~~~~~ 75 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST----YE-LAELL-SPSLFAE----ERVVVLEAAAE 75 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH----HH-HHHhc-CCCCCCC----ceEEEEeChHh
Confidence 55899999977777666777666543 23 355667776654322 22 33443 3343333 79999999877
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEecCCc---ccchhhhcce-eEEEecCC-CHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 021937 153 MTKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQSRC-TRFRFAPL-EPVHVTERLKHVIEAEGLDVTEGGLAA 227 (305)
Q Consensus 153 l~~~~~~~l~~~l~~~~~~~~iil~~~~~~---~l~~~l~~r~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (305)
+..+..+.|..+++.+++.+.+|++.+... .+.+.+.... ..+.+.++ +..++..|+...+.+.|..+++++++.
T Consensus 76 ~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~ 155 (320)
T PRK07914 76 AGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTA 155 (320)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 766677889999998887777777653221 2334565554 57899988 999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhhc-cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 228 LVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 228 l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
+++.++||+..+.+.+++++.. .+.||.++|++++......+++++++++..++..+|+..++.|...+..|+.++
T Consensus 156 L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~il 232 (320)
T PRK07914 156 LLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVVLA 232 (320)
T ss_pred HHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHHHH
Confidence 9999999999999999998763 467999999999999999999999999999999999999999999888777665
No 129
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67 E-value=2.3e-15 Score=144.97 Aligned_cols=202 Identities=15% Similarity=0.194 Sum_probs=140.6
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCCC
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 115 (305)
.++.++.+|..++.++|+++.+..+...+.....++.+|+||||+|||++++.++..+.... ....++.++....
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 35677789999999999999999999999888888899999999999999999999874321 1223444332211
Q ss_pred ----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------HHHHHHHHHHHHhcCCceEEEEecCC--
Q 021937 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------DAQFALRRVIEKYTKNTRFALICNQV-- 181 (305)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~~l~~~~~~~~iil~~~~~-- 181 (305)
.........+........ ...++.||||||+|.+.. +..+.|...+.. ....+|.+|+..
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~----~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVT----KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDEY 314 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHH----hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHHH
Confidence 111122222222222110 011268999999998863 223344444432 245566666543
Q ss_pred ---cccchhhhcceeEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHhh
Q 021937 182 ---NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE----GLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (305)
Q Consensus 182 ---~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~~~~ 248 (305)
...++++.+||+.+.++.|+.++...++.....+. ++.++++++..++..+.+ -|.+|+.+|+.++.
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 34689999999999999999999999988776653 567888899888887753 38999999987775
No 130
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.1e-15 Score=117.27 Aligned_cols=196 Identities=21% Similarity=0.274 Sum_probs=129.4
Q ss_pred CccccccchHHHHHHHHHHh-------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC---
Q 021937 51 SLADVAAHRDIVDTIDRLTS-------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--- 114 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~--- 114 (305)
++.++-|.+-.++++++... -.++..+++|||||||||.+++++++.. ...|+.+.++.
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvvgsefvq 227 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQ 227 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeeccHHHHH
Confidence 56677776655555555543 3455669999999999999999999975 55677777654
Q ss_pred ---CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHH-----hcCCceEE
Q 021937 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEK-----YTKNTRFA 175 (305)
Q Consensus 115 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~-----~~~~~~ii 175 (305)
..++..++..+.-+... .+.+|||||+|.+.. +.+..|+.+++. ...++.+|
T Consensus 228 kylgegprmvrdvfrlaken---------apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvi 298 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKEN---------APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVI 298 (408)
T ss_pred HHhccCcHHHHHHHHHHhcc---------CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEE
Confidence 23344444444444333 268999999998842 456667777764 34688999
Q ss_pred EEecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHhh-
Q 021937 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR---LCNGDMRKALNILQSTHM- 248 (305)
Q Consensus 176 l~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~~~g~~r~~~~~l~~~~~- 248 (305)
+++|+.+.++|++.+-. +.+.|+-|+..+.+-++..+..+.++.-+-+.-+.+++ .++.++. ..||.+..
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~---aicqeagm~ 375 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN---AICQEAGML 375 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH---HHHHHHhHH
Confidence 99999999999998754 66999988888887778777777665433333344443 2233333 33444433
Q ss_pred ----ccCccCHHHHHhhhC
Q 021937 249 ----ASQQITEEAVYLCTG 263 (305)
Q Consensus 249 ----~~~~i~~~~v~~~~~ 263 (305)
+...+...++++...
T Consensus 376 avr~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 376 AVRENRYVVLQKDFEKAYK 394 (408)
T ss_pred HHHhcceeeeHHHHHHHHH
Confidence 223366666665543
No 131
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.66 E-value=2.5e-14 Score=120.78 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc--
Q 021937 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-- 135 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 135 (305)
+...+..+...+..+ .+.++|+||+|+||||+++.+++.+.+... ....+.... .....+...+........-.
T Consensus 28 ~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~~~~~-~~~~~~l~~i~~~lG~~~~~~~ 103 (269)
T TIGR03015 28 HKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKLVNTR-VDAEDLLRMVAADFGLETEGRD 103 (269)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeeeeCCC-CCHHHHHHHHHHHcCCCCCCCC
Confidence 344444444444332 335899999999999999999998753221 111111111 11112221121111100000
Q ss_pred --------------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc---CCceEEEEecCC------cccchhhhcce
Q 021937 136 --------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---KNTRFALICNQV------NKIIPALQSRC 192 (305)
Q Consensus 136 --------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~---~~~~iil~~~~~------~~l~~~l~~r~ 192 (305)
.....++.+++|||+|.+.....+.+..+.+... ....+++++... ......+.+|+
T Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRI 183 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhhe
Confidence 0012346799999999999887776665544221 122344554321 01123466664
Q ss_pred -eEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh-----ccCccCHHHHHhhh
Q 021937 193 -TRFRFAPLEPVHVTERLKHVIEAEG----LDVTEGGLAALVRLCNGDMRKALNILQSTHM-----ASQQITEEAVYLCT 262 (305)
Q Consensus 193 -~~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 262 (305)
..+++++++.+++.+++...+...+ ..+++++++.|++.++|++|.+...+..+.. ..+.|+.++|+.++
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVI 263 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 6789999999999999999887665 3689999999999999999998777765533 23569999988876
Q ss_pred CC
Q 021937 263 GN 264 (305)
Q Consensus 263 ~~ 264 (305)
..
T Consensus 264 ~~ 265 (269)
T TIGR03015 264 AE 265 (269)
T ss_pred HH
Confidence 54
No 132
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6e-15 Score=135.27 Aligned_cols=202 Identities=20% Similarity=0.245 Sum_probs=143.4
Q ss_pred CCCCccccccchHHHHHHHHHHh-----------cCCC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 48 RPQSLADVAAHRDIVDTIDRLTS-----------ENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~-----------~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
.+..|.++.|.++++++|.+... +.+. ..++|+||||||||.||+++|.+. ..+|+.++++..
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSEF 380 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSEF 380 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHHH
Confidence 34579999999999998888765 2233 349999999999999999999987 778888887752
Q ss_pred ------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH---------------HHHHHHHHHHHh--cCCc
Q 021937 116 ------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD---------------AQFALRRVIEKY--TKNT 172 (305)
Q Consensus 116 ------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~l~~~l~~~--~~~~ 172 (305)
.+...+++.+..+.... +++|+|||+|.+... ..+.|+--++.. ...+
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~a---------P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNA---------PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccC---------CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 23444455554443333 699999999987532 123344444432 3345
Q ss_pred eEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH-HHHhh
Q 021937 173 RFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL-QSTHM 248 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l-~~~~~ 248 (305)
.++.+||.++.+++++.+ |+ +.++++.|+.....++++.++...+...++..+..++..+.|....-+..+ ..++.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~ 531 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL 531 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH
Confidence 666678999999999987 45 679999999999999999998877766566666669999988766655443 43333
Q ss_pred -----ccCccCHHHHHhhhC
Q 021937 249 -----ASQQITEEAVYLCTG 263 (305)
Q Consensus 249 -----~~~~i~~~~v~~~~~ 263 (305)
....|+..++..++.
T Consensus 532 ~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 532 LAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHhccCccchhhHHHHHH
Confidence 224466666655554
No 133
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.65 E-value=3.6e-15 Score=142.39 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=132.8
Q ss_pred ccccchHHHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChh--------
Q 021937 54 DVAAHRDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID-------- 119 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 119 (305)
++.|++..++.+..++.. ...++++|+||||||||++++++++.+ ...++.++........
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l-----~~~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL-----NRKFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh-----cCCeEEEeCCCcccHHHHcCCCCc
Confidence 578999999988886542 234569999999999999999999998 3345555443221111
Q ss_pred -------HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHH----HHHHHHHHHHh---------------cCCce
Q 021937 120 -------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA----QFALRRVIEKY---------------TKNTR 173 (305)
Q Consensus 120 -------~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~----~~~l~~~l~~~---------------~~~~~ 173 (305)
.+.+.+... .....||+|||+|.+.... .+.|+.+++.. ..++.
T Consensus 396 ~~g~~~g~i~~~l~~~----------~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKA----------KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred eeCCCCchHHHHHHHh----------CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 111111111 1113499999999997532 46788887641 03567
Q ss_pred EEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHcC--CCHHHHHH
Q 021937 174 FALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIE-----AE-----GLDVTEGGLAALVRLCN--GDMRKALN 241 (305)
Q Consensus 174 iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~~~--g~~r~~~~ 241 (305)
||+++|....+++++++|+.++.|++|+.++..++++.++. .. ++.++++++..|++... ..+|.+..
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 77888998899999999999999999999999888876552 22 34689999999887442 33454444
Q ss_pred HHHHHhh------c--c---------CccCHHHHHhhhCCCC
Q 021937 242 ILQSTHM------A--S---------QQITEEAVYLCTGNPL 266 (305)
Q Consensus 242 ~l~~~~~------~--~---------~~i~~~~v~~~~~~~~ 266 (305)
.++..+. . . -.++.++++..++...
T Consensus 546 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~~ 587 (775)
T TIGR00763 546 QIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKPV 587 (775)
T ss_pred HHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCccc
Confidence 4433331 0 0 1467777777776553
No 134
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.65 E-value=3.7e-14 Score=118.70 Aligned_cols=192 Identities=20% Similarity=0.213 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH---------HHHhh
Q 021937 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ---------IQDFA 129 (305)
Q Consensus 59 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~~ 129 (305)
...++.+..++..+ .+++|+||||||||++|+.+++.+ ...++.+++........+... ...+.
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR-----DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 34455666666655 358999999999999999999876 445666665543332222110 00000
Q ss_pred ----hcc-----cccCC----CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc----------------CCceEEEEecC
Q 021937 130 ----STQ-----SFSFG----VKASVKLVLLDEADAMTKDAQFALRRVIEKYT----------------KNTRFALICNQ 180 (305)
Q Consensus 130 ----~~~-----~~~~~----~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~----------------~~~~iil~~~~ 180 (305)
... .+..+ ....+.+++|||+++++++.++.|+.++++.. ++.++|+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 000 00000 01235799999999999999999999997521 24567777775
Q ss_pred C-----cccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----------CCHHHHHHHHHH
Q 021937 181 V-----NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN----------GDMRKALNILQS 245 (305)
Q Consensus 181 ~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------g~~r~~~~~l~~ 245 (305)
. ..+.+++.+||..+.++.|+.++..+++...+ .++++..+.+++... -.+|.++...+.
T Consensus 161 ~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~ 235 (262)
T TIGR02640 161 VEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEV 235 (262)
T ss_pred ccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHH
Confidence 4 24578899999999999999999998887753 356666666665431 127777777766
Q ss_pred Hhhcc--CccCHHHHHhhh
Q 021937 246 THMAS--QQITEEAVYLCT 262 (305)
Q Consensus 246 ~~~~~--~~i~~~~v~~~~ 262 (305)
+...+ ..++++++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 236 ATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHcCCCCCCCcHHHHHHH
Confidence 66543 235555554443
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=1.4e-14 Score=136.14 Aligned_cols=210 Identities=12% Similarity=0.143 Sum_probs=138.1
Q ss_pred CCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC-----cccEEEeecCC----CcCh
Q 021937 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-----HNMILELNASD----DRGI 118 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~----~~~~ 118 (305)
+-..++.++|++..+..+...+.....++++|+||||+|||++|+.++..+..... ...++.++... ....
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~ 260 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchh
Confidence 45678899999999999999999887788999999999999999999987643321 11222222111 0111
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----HHHHHHHHHHHHhc--CCceEEEEecCC-----cccch
Q 021937 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----DAQFALRRVIEKYT--KNTRFALICNQV-----NKIIP 186 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~~~~l~~~l~~~~--~~~~iil~~~~~-----~~l~~ 186 (305)
......+....... ....+.+|||||+|.+.. ..+..+.+++...- ....+|.+|+.. ...++
T Consensus 261 Ge~e~rl~~l~~~l-----~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~ 335 (758)
T PRK11034 261 GDFEKRFKALLKQL-----EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_pred hhHHHHHHHHHHHH-----HhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccH
Confidence 12222222221111 011257999999998831 11222333333221 245555555543 24689
Q ss_pred hhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC------CCHHHHHHHHHHHhhcc------
Q 021937 187 ALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCN------GDMRKALNILQSTHMAS------ 250 (305)
Q Consensus 187 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~------g~~r~~~~~l~~~~~~~------ 250 (305)
++.+||+.+.+++|+.++..++++....+ .++.++++++..+++++. .-|..++.+|+.++...
T Consensus 336 AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~ 415 (758)
T PRK11034 336 ALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVS 415 (758)
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999999876553 467899999988887664 35789999998887422
Q ss_pred ---CccCHHHHHhhh
Q 021937 251 ---QQITEEAVYLCT 262 (305)
Q Consensus 251 ---~~i~~~~v~~~~ 262 (305)
..++.++|.+++
T Consensus 416 ~~~~~v~~~~i~~v~ 430 (758)
T PRK11034 416 KRKKTVNVADIESVV 430 (758)
T ss_pred ccccccChhhHHHHH
Confidence 236666666554
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=4.9e-15 Score=142.13 Aligned_cols=199 Identities=16% Similarity=0.196 Sum_probs=140.4
Q ss_pred cchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCCC
Q 021937 41 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASDD 115 (305)
Q Consensus 41 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 115 (305)
.++.++.+|..++.++|++..+..+...+.....++++|+||||+|||++++.++..+.... ....++.++....
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 34666778999999999999999999999998888899999999999999999999874321 1233444433221
Q ss_pred ----cC----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------HHHHHHHHHHHhcCCceEEEEec
Q 021937 116 ----RG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 116 ----~~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
.. ...++..+...... ..+.||||||+|.+... ..+.|...+... ...+|.+|+
T Consensus 246 ~ag~~~~g~~e~~lk~~~~~~~~~--------~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt 315 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATT 315 (857)
T ss_pred hhccchhhhhHHHHHHHHHHHHHc--------CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCC
Confidence 11 12233333333221 12689999999999632 345555555432 556666665
Q ss_pred CCc-----ccchhhhcceeEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcC------CCHHHHHHHHH
Q 021937 180 QVN-----KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE----GLDVTEGGLAALVRLCN------GDMRKALNILQ 244 (305)
Q Consensus 180 ~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~~~------g~~r~~~~~l~ 244 (305)
..+ ..++++.+||+.+.+..|+.++...+++....+. ++.++++++...+..+. .-|..|+.++.
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD 395 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLID 395 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHH
Confidence 443 4689999999889999999999999887766543 56778888877766653 35778888887
Q ss_pred HHhhc
Q 021937 245 STHMA 249 (305)
Q Consensus 245 ~~~~~ 249 (305)
.++..
T Consensus 396 ~aaa~ 400 (857)
T PRK10865 396 EAASS 400 (857)
T ss_pred HHhcc
Confidence 77653
No 137
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.64 E-value=1.4e-13 Score=119.15 Aligned_cols=227 Identities=20% Similarity=0.174 Sum_probs=168.8
Q ss_pred HHHHHHHhcCC-CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCc
Q 021937 63 DTIDRLTSENR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKAS 141 (305)
Q Consensus 63 ~~l~~~l~~~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (305)
+++...++.+. .|.++|+|..---....+..+.+.+...+.... +..+ . .+ ..+ +.......++.++
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~-~~~~--~-~~---~~~-i~~~~~t~plF~~---- 71 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKT-LYFD--E-YD---FEQ-AKDFLSQSSLFGG---- 71 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhh-hchh--h-cc---HHH-HHHHHhcccccCC----
Confidence 35666677664 455899999977777777777776543322211 2222 1 11 222 3333344443333
Q ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc---ccchhhhcc--eeEEEecCCCHHHHHHHHHHHHHHc
Q 021937 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAE 216 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~---~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (305)
+.+|++.+.+.........|..+++.++..+.+|++..... .+.+.+... +..+.+.+++..++..|+...+.+.
T Consensus 72 ~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~ 151 (328)
T PRK08487 72 KNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKEL 151 (328)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 79999998877766667888888888765555554443322 122333322 4578899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 021937 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFII 296 (305)
Q Consensus 217 ~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~ 296 (305)
|..+++++++.++..+++|...+.+.|++++...+.||.++|..++......+++++++++..++ .++..++.|..++
T Consensus 152 g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~~L~~~g 229 (328)
T PRK08487 152 GLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLEKLLEEG 229 (328)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHHHHHHCC
Confidence 99999999999999999999999999999999888899999999999999999999999999988 5788899998888
Q ss_pred HHHHHhh
Q 021937 297 RLVLFVL 303 (305)
Q Consensus 297 ~~~~~~~ 303 (305)
..|+.++
T Consensus 230 ~~pi~Il 236 (328)
T PRK08487 230 FNEIALL 236 (328)
T ss_pred CCHHHHH
Confidence 8877665
No 138
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-14 Score=130.27 Aligned_cols=169 Identities=22% Similarity=0.282 Sum_probs=117.1
Q ss_pred CCccccccchHHHHHHHHHHhc----------C--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC--
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE----------N--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 115 (305)
.+|+++-|-++.+..+...+.- + +..+++||||||||||.+|+++|.++ ...|+.+.+++.
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-----sL~FlSVKGPELLN 743 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELLN 743 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-----eeeEEeecCHHHHH
Confidence 3789999999999998888752 1 23459999999999999999999998 677888776652
Q ss_pred ----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH-------------HHHHHHHHHHHhc----CCceE
Q 021937 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-------------AQFALRRVIEKYT----KNTRF 174 (305)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~~----~~~~i 174 (305)
.....+++.++.+ +.+.++|||+||+|.+.+. ....|+.-++... ..+-+
T Consensus 744 MYVGqSE~NVR~VFerA---------R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFV 814 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERA---------RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFV 814 (953)
T ss_pred HHhcchHHHHHHHHHHh---------hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEE
Confidence 2333444444443 3445799999999999542 3455666666443 23445
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCCHHHHHH-HHHHHHHHcCCCCCHHH-HHHHHHHcCC
Q 021937 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTE-RLKHVIEAEGLDVTEGG-LAALVRLCNG 234 (305)
Q Consensus 175 il~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~-~~~l~~~~~g 234 (305)
|.+||+++-+++++.+ || ..+++.+.+..+-+. +++...+ .+.+++++ +.+|++.|.-
T Consensus 815 iGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr--kFkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 815 IGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR--KFKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred EecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH--HccCCCCcCHHHHHhhCCc
Confidence 5567999999999987 56 557777777655444 4444433 34455443 6778888753
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.63 E-value=8e-15 Score=140.31 Aligned_cols=193 Identities=25% Similarity=0.325 Sum_probs=134.3
Q ss_pred cccccchHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021937 53 ADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
..++||+..++.+.+.+... ++ ..++|+||+|+|||.+|+++++.+.... ..++.++.+..........
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~--~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE--QNLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC--cceEEEeHHHhhhhhhhcc
Confidence 46889999999888887531 11 2389999999999999999999985432 2455555443221111111
Q ss_pred HHHHhhhcccccC-------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC----
Q 021937 124 QIQDFASTQSFSF-------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV---- 181 (305)
Q Consensus 124 ~i~~~~~~~~~~~-------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~---- 181 (305)
.+.....+..+.. -.+.+++||+|||++.++++.++.|++++++.. .++.+|+++|..
T Consensus 644 l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~ 723 (852)
T TIGR03345 644 LKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLI 723 (852)
T ss_pred ccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHH
Confidence 1111000000000 012457899999999999999999999999764 567788887521
Q ss_pred -------------------------cccchhhhcceeEEEecCCCHHHHHHHHHHHHHH-------c-C--CCCCHHHHH
Q 021937 182 -------------------------NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA-------E-G--LDVTEGGLA 226 (305)
Q Consensus 182 -------------------------~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-------~-~--~~~~~~~~~ 226 (305)
..+.|.+.+|+.++.|.|++.+++.+++...+.. . + +.+++++++
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~ 803 (852)
T TIGR03345 724 MALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVE 803 (852)
T ss_pred HHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHH
Confidence 0245778889999999999999999988776543 1 4 367999999
Q ss_pred HHHHHcCC---CHHHHHHHHHHHh
Q 021937 227 ALVRLCNG---DMRKALNILQSTH 247 (305)
Q Consensus 227 ~l~~~~~g---~~r~~~~~l~~~~ 247 (305)
.|++.+.+ ..|.+.+.++...
T Consensus 804 ~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 804 HIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHcCCCCCChHHHHHHHHHHH
Confidence 99999876 6899998887643
No 140
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.63 E-value=1.5e-13 Score=119.97 Aligned_cols=230 Identities=16% Similarity=0.194 Sum_probs=170.8
Q ss_pred HHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC-cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCC
Q 021937 64 TIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (305)
Q Consensus 64 ~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (305)
.+...+.. +..+.++|||+........++.+.+.+...+. ...+..+++.... ....+ +.......++.++
T Consensus 8 ~~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~--~~~~~-~~~~~~t~slF~~--- 81 (343)
T PRK06585 8 EVDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD--ADPAR-LEDEANAISLFGG--- 81 (343)
T ss_pred HHHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh--cCHHH-HHHHHhCCCCCCC---
Confidence 33444443 24566999999998888888888887643321 2344444432211 01223 3333444443333
Q ss_pred ceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc---ccchhhh--cceeEEEecCCCHHHHHHHHHHHHHH
Q 021937 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN---KIIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEA 215 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~---~l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~ 215 (305)
+.+|++.+.+ +...+.|..+++.+++.+.+|+.+...+ .+.+.+. ..+..+.+.+++..++..|+...+.+
T Consensus 82 -~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 157 (343)
T PRK06585 82 -RRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAE 157 (343)
T ss_pred -ceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHH
Confidence 6899999654 3345678888888777777776654322 2333332 23466788899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc---CccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHH
Q 021937 216 EGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNL 292 (305)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~---~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l 292 (305)
.|..+++++++.+++.++||++.+.+.+++++... +.||.++|++++......+++++++++..++..+|+..++.+
T Consensus 158 ~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~l 237 (343)
T PRK06585 158 AGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRA 237 (343)
T ss_pred CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998863 469999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 021937 293 SFIIRLVLFVL 303 (305)
Q Consensus 293 ~~~~~~~~~~~ 303 (305)
..++..|+.++
T Consensus 238 l~~g~~p~~il 248 (343)
T PRK06585 238 LAEGTAPVLIL 248 (343)
T ss_pred HHcCCCHHHHH
Confidence 99988877665
No 141
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.6e-14 Score=122.91 Aligned_cols=198 Identities=18% Similarity=0.209 Sum_probs=131.5
Q ss_pred CCCCccccccchHHHH----HHHHHHhcC---------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 48 RPQSLADVAAHRDIVD----TIDRLTSEN---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~----~l~~~l~~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
.|.+|+.++-.+...+ .|...+++. -..+++||||||||||+++.++|+.+ ...+..++.+.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIydLeLt~ 270 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYDLELTE 270 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCceEEeeecc
Confidence 4567877777655555 444554432 12349999999999999999999998 45556666555
Q ss_pred CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH------------------HHHHHHHHHHHHhcC----Cc
Q 021937 115 DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK------------------DAQFALRRVIEKYTK----NT 172 (305)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~l~~~l~~~~~----~~ 172 (305)
.....+++.++..... +.||+|+|+|+-.. -....|+++++.... ..
T Consensus 271 v~~n~dLr~LL~~t~~-----------kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ER 339 (457)
T KOG0743|consen 271 VKLDSDLRHLLLATPN-----------KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDER 339 (457)
T ss_pred ccCcHHHHHHHHhCCC-----------CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCce
Confidence 5556667776655433 68999999998621 123458888886653 34
Q ss_pred eEEEEecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc
Q 021937 173 RFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 249 (305)
.+|+|||..++++|+|.+++ ..+++...+.+..+.++.+++.... +......|.+...+
T Consensus 340 IivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~--------------- 401 (457)
T KOG0743|consen 340 IIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEE--------------- 401 (457)
T ss_pred EEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhc---------------
Confidence 67888999999999999954 6699999999999988888763221 34444444443222
Q ss_pred cCccCHHHHHhhhCC---CChhhHHHHHHHHHcc
Q 021937 250 SQQITEEAVYLCTGN---PLPKDIEQISYWLLNE 280 (305)
Q Consensus 250 ~~~i~~~~v~~~~~~---~~~~~~~~l~~~~~~~ 280 (305)
..+++.+|.+.+-. .....+..+++.+...
T Consensus 402 -~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743|consen 402 -TEVTPAQVAEELMKNKNDADVALKGLVEALESK 434 (457)
T ss_pred -CccCHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence 23566666544422 2344555555555443
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=1.3e-14 Score=136.48 Aligned_cols=186 Identities=19% Similarity=0.261 Sum_probs=125.6
Q ss_pred ccccchHHHHHHHHHHhc--------CC-CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH
Q 021937 54 DVAAHRDIVDTIDRLTSE--------NR-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ 124 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~--------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (305)
.++||++.++.+...+.. ++ ..+++|+||+|||||.+|+.+++.+ ...++.++++.......+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-----~~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCCcEEeechhhcccccHHHH
Confidence 589999999999888763 12 2348999999999999999999998 345666666543322222222
Q ss_pred HHHhhhcccccC-------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-----
Q 021937 125 IQDFASTQSFSF-------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV----- 181 (305)
Q Consensus 125 i~~~~~~~~~~~-------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~----- 181 (305)
+.....+..+.. -...+.+||+|||+++++++.++.|++++++.. .++.+|+++|..
T Consensus 534 iG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~ 613 (758)
T PRK11034 534 IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHh
Confidence 211000000000 012346899999999999999999999998642 355678887621
Q ss_pred --------------------cccchhhhcce-eEEEecCCCHHHHHHHHHHHHH-------HcCC--CCCHHHHHHHHHH
Q 021937 182 --------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE-------AEGL--DVTEGGLAALVRL 231 (305)
Q Consensus 182 --------------------~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~-------~~~~--~~~~~~~~~l~~~ 231 (305)
..+.|.+.+|+ .++.|+|++.+++.+++...+. ..|+ .+++++++.|++.
T Consensus 614 ~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~ 693 (758)
T PRK11034 614 RKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEK 693 (758)
T ss_pred hcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHh
Confidence 12457888898 5899999999999888866544 2243 5789999999976
Q ss_pred cC---CCHHHHHHHHH
Q 021937 232 CN---GDMRKALNILQ 244 (305)
Q Consensus 232 ~~---g~~r~~~~~l~ 244 (305)
.. .-.|.+...++
T Consensus 694 ~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 694 GYDRAMGARPMARVIQ 709 (758)
T ss_pred CCCCCCCCchHHHHHH
Confidence 52 12455544444
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=2e-14 Score=138.17 Aligned_cols=195 Identities=14% Similarity=0.190 Sum_probs=137.6
Q ss_pred cCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----CcccEEEeecCC----CcC
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----YHNMILELNASD----DRG 117 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~----~~~ 117 (305)
-+...++.++|++..++++.+.+.....++++|+||||||||++|+.++..+.... ....++.++... ...
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~ 252 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY 252 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC
Confidence 35667899999999999999999998888899999999999999999999875322 124455665432 111
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------HHHHHHHHHHHhcCCceEEEEecCC-----ccc
Q 021937 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIEKYTKNTRFALICNQV-----NKI 184 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------~~~~l~~~l~~~~~~~~iil~~~~~-----~~l 184 (305)
.....+.+........ ..++.||||||+|.+... ..+.|...+... ...+|.+|+.. ...
T Consensus 253 ~ge~e~rl~~i~~~~~-----~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 253 RGEFEERLKRIFDEIQ-----ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred ccHHHHHHHHHHHHHH-----hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHHHHHHHHhc
Confidence 2233333333322111 112589999999987532 234444444432 45666666543 245
Q ss_pred chhhhcceeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHhh
Q 021937 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEA----EGLDVTEGGLAALVRLCNG------DMRKALNILQSTHM 248 (305)
Q Consensus 185 ~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~~~~ 248 (305)
++.+.+||+.+.++.|+.++...+++..... .++.++++++..++..+.+ -|+.++.+|+.++.
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 7899999999999999999988887765432 3667899999999988864 48899999987775
No 144
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.1e-14 Score=113.12 Aligned_cols=168 Identities=22% Similarity=0.314 Sum_probs=118.7
Q ss_pred ccccccchHHHHHHHHHHh-------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC---
Q 021937 52 LADVAAHRDIVDTIDRLTS-------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--- 115 (305)
Q Consensus 52 ~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--- 115 (305)
++-+-|-+..++.+++.+. -..+..++|+||||+|||.++++++... .+.|+.++++..
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgselvqk 220 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQK 220 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHHHHHH
Confidence 4455556777777777664 2344569999999999999999999876 567888776541
Q ss_pred ---cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHH-----hcCCceEEE
Q 021937 116 ---RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEK-----YTKNTRFAL 176 (305)
Q Consensus 116 ---~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~-----~~~~~~iil 176 (305)
.+...+++.+.-+ ...-+.+||.||+|.+. .+.+..++.+++. ..++..+|+
T Consensus 221 ~igegsrmvrelfvma---------rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvim 291 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMA---------REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 291 (404)
T ss_pred HhhhhHHHHHHHHHHH---------HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEE
Confidence 1222223332222 22336999999999984 3456667777664 346788999
Q ss_pred EecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 021937 177 ICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (305)
Q Consensus 177 ~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 234 (305)
++|+.+-+++++.+-. +.+.|+||+.+...++++....+.+..- .-.+..|++..+|
T Consensus 292 atnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~r-gi~l~kiaekm~g 351 (404)
T KOG0728|consen 292 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR-GINLRKIAEKMPG 351 (404)
T ss_pred eccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhc-ccCHHHHHHhCCC
Confidence 9999999999998754 5699999999999999998887766421 1225667776655
No 145
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.61 E-value=3.8e-14 Score=121.29 Aligned_cols=215 Identities=15% Similarity=0.221 Sum_probs=131.1
Q ss_pred CCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC----CcccEEEeec-----------
Q 021937 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ----YHNMILELNA----------- 112 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~----------- 112 (305)
.|..|.+++|++..+..+.-.+-....+|++|+|+||+|||++++.++..+.+.. ..+.+.....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 4678999999999999888665434446799999999999999999999873211 0000000000
Q ss_pred -----------CCC------cChhHHHHHHHHhhhcccccCC--CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc----
Q 021937 113 -----------SDD------RGIDVVRQQIQDFASTQSFSFG--VKASVKLVLLDEADAMTKDAQFALRRVIEKYT---- 169 (305)
Q Consensus 113 -----------~~~------~~~~~~~~~i~~~~~~~~~~~~--~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~---- 169 (305)
+.. .+.-.+...+.. ....+..+ ..++.+++++||++.+++..+..|++.+++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~--g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~ 160 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTR--GEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVE 160 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhc--CCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEE
Confidence 000 000011111110 11111111 23456899999999999999999999998642
Q ss_pred -------CCceEEEEe--cCCc-ccchhhhcce-eEEEecCCCH-HHHHHHHHHHHHH----------------------
Q 021937 170 -------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIEA---------------------- 215 (305)
Q Consensus 170 -------~~~~iil~~--~~~~-~l~~~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~~---------------------- 215 (305)
....|++++ |..+ .+.+++..|| ..+.+.++.. ++..+++......
T Consensus 161 r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (334)
T PRK13407 161 REGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRI 240 (334)
T ss_pred ECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHH
Confidence 122344433 4322 4788899998 5677777665 5655555542210
Q ss_pred -------cCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHhh-----ccCccCHHHHHhhhCC
Q 021937 216 -------EGLDVTEGGLAALVRLC---N-GDMRKALNILQSTHM-----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 216 -------~~~~~~~~~~~~l~~~~---~-g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~~ 264 (305)
..+.+++++++++++.+ + ..+|..+.++..+.. ..+.++.++|+++...
T Consensus 241 ~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 241 LGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred HHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 13567888888777654 2 357777665543333 3356999999877733
No 146
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.61 E-value=7.7e-14 Score=125.38 Aligned_cols=194 Identities=23% Similarity=0.290 Sum_probs=137.9
Q ss_pred cccchHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhC-----CCCcccEEEeecCCCcChhHHHHH
Q 021937 55 VAAHRDIVDTIDRLTSE-----NRLPHLLLYGPPGTGKTSTILAVARKLYG-----AQYHNMILELNASDDRGIDVVRQQ 124 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 124 (305)
+-+++.....+...+.. +.+..++++|-||+|||.++..+.+.+.. .-..+.++++|+........++..
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 44566666666666553 22234899999999999999999998752 235678999999887776666665
Q ss_pred HHHhhhccc-------------c-cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-CCc--eEEEEecCCcccch-
Q 021937 125 IQDFASTQS-------------F-SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNT--RFALICNQVNKIIP- 186 (305)
Q Consensus 125 i~~~~~~~~-------------~-~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~--~iil~~~~~~~l~~- 186 (305)
+-....... | ......+..||+|||.|.|....|..|+++++++. ++. .+|.++|.. .+++
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm-dlPEr 556 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM-DLPER 556 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc-cCHHH
Confidence 544322111 1 12345667899999999999999999999999865 233 333344433 3333
Q ss_pred ----hhhcc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHhhcc
Q 021937 187 ----ALQSR--CTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLC---NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 187 ----~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~~~ 250 (305)
...+| ++.+.|.|++..++.+++..++... ..+..++++.+++.. .||.|+|++.|..++..+
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33345 4889999999999999999887655 246777877777643 699999999999887643
No 147
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.61 E-value=1.9e-13 Score=117.49 Aligned_cols=204 Identities=13% Similarity=0.138 Sum_probs=158.2
Q ss_pred HHHHHHHHhCCCC-cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-HHHHHHHHHHHHHh
Q 021937 91 ILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-KDAQFALRRVIEKY 168 (305)
Q Consensus 91 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-~~~~~~l~~~l~~~ 168 (305)
+..+...+...+. ...++.+++.+ ...+. +.......++.++ +.+++|++++.+. ....+.|.++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~----l~~~~~~~slf~~----~kliii~~~~~~~~~~~~~~L~~~l~~~ 74 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGEE-FDWNQ----LLEEAQTLPLFSE----RRLVELRNPEGKPGAKGLKALEEYLANP 74 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccCC-CCHHH----HHHHhhccCcccC----CeEEEEECCCCCCCHHHHHHHHHHHhcC
Confidence 3444444433332 45566666553 23333 2233333333322 7999999999986 35678899999998
Q ss_pred cCCceEEEEecCCcc---cchhhh--cceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021937 169 TKNTRFALICNQVNK---IIPALQ--SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 169 ~~~~~iil~~~~~~~---l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
+++..++++++..+. +.+.+. +++..+.|.+++..++..++...+.+.|..+++++++.++..++||++.+.+.+
T Consensus 75 ~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el 154 (302)
T TIGR01128 75 PPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQEL 154 (302)
T ss_pred CCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHH
Confidence 888888887764432 222333 388999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc--cCccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhh
Q 021937 244 QSTHMA--SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFVL 303 (305)
Q Consensus 244 ~~~~~~--~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 303 (305)
++++.. .+.||.++|+..+......+++.+++++..++..+++..++.+..++..++.++
T Consensus 155 ~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il 216 (302)
T TIGR01128 155 EKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILL 216 (302)
T ss_pred HHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHH
Confidence 998875 356999999999999999999999999999999999999999999887776554
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-14 Score=133.82 Aligned_cols=192 Identities=19% Similarity=0.286 Sum_probs=138.9
Q ss_pred cccccchHHHHHHHHHHhcC---------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021937 53 ADVAAHRDIVDTIDRLTSEN---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
..++||++.+..+.+.+... +..+++|.||+|+|||.++++++..+... ....+.++-+.......+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHHHHH
Confidence 46899999999998888632 22348999999999999999999998533 34567777666554555555
Q ss_pred HHHHhhhcccccCC-------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC----
Q 021937 124 QIQDFASTQSFSFG-------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV---- 181 (305)
Q Consensus 124 ~i~~~~~~~~~~~~-------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~---- 181 (305)
++..-..+..+..+ .+.+++||++||+++.+++..+.|++++++.. .++.||+|+|-.
T Consensus 569 LIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i 648 (786)
T COG0542 569 LIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEI 648 (786)
T ss_pred HhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHH
Confidence 55544444444332 34668999999999999999999999999643 467788887421
Q ss_pred ------------------------cccchhhhccee-EEEecCCCHHHHHHHHHHHHHH-------cCC--CCCHHHHHH
Q 021937 182 ------------------------NKIIPALQSRCT-RFRFAPLEPVHVTERLKHVIEA-------EGL--DVTEGGLAA 227 (305)
Q Consensus 182 ------------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~~--~~~~~~~~~ 227 (305)
..+.|.|.+|+. ++.|.+++.+++.+++...+.+ .++ .+++++.++
T Consensus 649 ~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~ 728 (786)
T COG0542 649 LRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDF 728 (786)
T ss_pred HhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHH
Confidence 023567778874 8999999999988887665543 233 578999999
Q ss_pred HHHHcC---CCHHHHHHHHHHH
Q 021937 228 LVRLCN---GDMRKALNILQST 246 (305)
Q Consensus 228 l~~~~~---g~~r~~~~~l~~~ 246 (305)
|++.+. .-.|-+...+|.-
T Consensus 729 l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 729 LAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred HHHhccCCCcCchHHHHHHHHH
Confidence 998773 2356565555443
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=2.2e-14 Score=136.32 Aligned_cols=189 Identities=19% Similarity=0.245 Sum_probs=127.2
Q ss_pred cccccchHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021937 53 ADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
+.++||++.++.+.+.+... ++ .+++|+||+|+|||++|+.+++.+ ...++.++.+..........
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccHHH
Confidence 46889999999888887631 12 248999999999999999999988 23455555544222111111
Q ss_pred HHHHhhhcccccC-------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc---
Q 021937 124 QIQDFASTQSFSF-------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN--- 182 (305)
Q Consensus 124 ~i~~~~~~~~~~~-------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~~--- 182 (305)
.+.....+..+.. -...+.+||+|||++++.++.++.|++++++.. .++.+|+++|...
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~ 608 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEM 608 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhh
Confidence 1111111000000 012346899999999999999999999998641 3456777765321
Q ss_pred ----------------------ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHH
Q 021937 183 ----------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------EG--LDVTEGGLAALVR 230 (305)
Q Consensus 183 ----------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~~ 230 (305)
.+.|.+.+|+ .++.|+|++.+++.+++...+.+ .| +.+++++++.|++
T Consensus 609 ~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~ 688 (731)
T TIGR02639 609 SKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAE 688 (731)
T ss_pred hhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHH
Confidence 2466788888 68999999999999998877653 22 4678999999998
Q ss_pred HcC---CCHHHHHHHHHHH
Q 021937 231 LCN---GDMRKALNILQST 246 (305)
Q Consensus 231 ~~~---g~~r~~~~~l~~~ 246 (305)
... -..|.+...++..
T Consensus 689 ~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 689 KGYDEEFGARPLARVIQEE 707 (731)
T ss_pred hCCCcccCchHHHHHHHHH
Confidence 642 2356666665544
No 150
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.7e-14 Score=119.58 Aligned_cols=187 Identities=19% Similarity=0.303 Sum_probs=126.5
Q ss_pred CccccccchHHHHHHHHHHh----------c----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC-
Q 021937 51 SLADVAAHRDIVDTIDRLTS----------E----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD- 115 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~----------~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~- 115 (305)
+|.++-|-+..++++...+- . ..+.+++++||||||||.+|++++++. ...++.+..+..
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt 164 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLT 164 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccc
Confidence 67899999999998887753 1 233459999999999999999999997 445555555432
Q ss_pred -cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH-------H----HHHHHHHHHHhc----CCceEEEEec
Q 021937 116 -RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-------A----QFALRRVIEKYT----KNTRFALICN 179 (305)
Q Consensus 116 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------~----~~~l~~~l~~~~----~~~~iil~~~ 179 (305)
.+..+-...+..... .+.+-.+.+|+|||++.+... . .+.|...=+... ..+.++.+||
T Consensus 165 ~KWfgE~eKlv~AvFs-----lAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFS-----LASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred hhhHHHHHHHHHHHHh-----hhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 333333333333222 222344899999999987521 1 122222222221 1233444579
Q ss_pred CCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHhh
Q 021937 180 QVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDM-RKALNILQSTHM 248 (305)
Q Consensus 180 ~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~-r~~~~~l~~~~~ 248 (305)
++..++.++.+|+ ++++++-|+..+..+|++-+++.+++. ++-.+..+++.+.|-- +.+.++|..++.
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 9999999999997 889999999999999999999888764 3344788999988743 444455544443
No 151
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=6.3e-14 Score=130.94 Aligned_cols=202 Identities=19% Similarity=0.203 Sum_probs=135.8
Q ss_pred hcCCCCccccccchHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021937 46 KYRPQSLADVAAHRDIVDTIDRLTSE------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
......|.++.|.+..++.+...+.. ..+++++|+||||||||+++++++.++ ...++.+++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-----~~~f~~is~~ 219 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTISGS 219 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEehH
Confidence 33455688899988888777665531 123459999999999999999999987 4456666654
Q ss_pred CC------cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHHHHhc--CC
Q 021937 114 DD------RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYT--KN 171 (305)
Q Consensus 114 ~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~~--~~ 171 (305)
.. .+...++..+..... ..++||||||+|.+... ..+.|+..++... ..
T Consensus 220 ~~~~~~~g~~~~~~~~~f~~a~~---------~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 220 DFVEMFVGVGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HhHHhhhcccHHHHHHHHHHHHh---------cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 31 223334444443322 23689999999998421 2334454455433 34
Q ss_pred ceEEEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Q 021937 172 TRFALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG----DMRKALNILQ 244 (305)
Q Consensus 172 ~~iil~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g----~~r~~~~~l~ 244 (305)
+.+|.+||.++.+++++.+ |+ ..+.++.|+.+++.++++.++.+..+.-+ ..+..+++.+.| |+..+++...
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d~~~la~~t~G~sgadl~~l~~eAa 369 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-IDAAIIARGTPGFSGADLANLVNEAA 369 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CCHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 5666778999999999986 67 77999999999999999998876543222 235668888877 6666665554
Q ss_pred HHhh--ccCccCHHHHHhhh
Q 021937 245 STHM--ASQQITEEAVYLCT 262 (305)
Q Consensus 245 ~~~~--~~~~i~~~~v~~~~ 262 (305)
..+. ....|+..+++++.
T Consensus 370 ~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 370 LFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHcCCCcccHHHHHHHH
Confidence 3333 23458888887664
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.59 E-value=2.5e-13 Score=109.18 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=131.4
Q ss_pred hhcCCCCccccccchHHHHHHHHH----HhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhH
Q 021937 45 EKYRPQSLADVAAHRDIVDTIDRL----TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120 (305)
Q Consensus 45 ~~~~p~~~~~~~g~~~~~~~l~~~----l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (305)
....|..+++++|.+..++.|.+. +.+.+..+++|+|++|||||++++++.+++...+ ...+++..........
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~ 96 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPE 96 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHH
Confidence 344566789999987777766544 4566666799999999999999999999987665 4567776655545554
Q ss_pred HHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-HHHHHHHHHHH----HhcCCceEEEEecCCcccch---------
Q 021937 121 VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-DAQFALRRVIE----KYTKNTRFALICNQVNKIIP--------- 186 (305)
Q Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-~~~~~l~~~l~----~~~~~~~iil~~~~~~~l~~--------- 186 (305)
+...+... . .+-||++||+-.=.. .....|-.+|+ ..|.++.+..|+|...-+.+
T Consensus 97 l~~~l~~~---~--------~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~ 165 (249)
T PF05673_consen 97 LLDLLRDR---P--------YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQ 165 (249)
T ss_pred HHHHHhcC---C--------CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCC
Confidence 44444321 1 268999999654332 33455666665 45667777777764322111
Q ss_pred --------------hhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHcCCCHHHHHHHHHHH
Q 021937 187 --------------ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGL-----AALVRLCNGDMRKALNILQST 246 (305)
Q Consensus 187 --------------~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~l~~~~~g~~r~~~~~l~~~ 246 (305)
+|..|| .++.|.+|+.++..+++..++.+.|+.++.+.+ +.-....+.+.|.|.+-++.+
T Consensus 166 ~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 166 DDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred ccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 334566 779999999999999999999999999985433 333344456888888777655
Q ss_pred h
Q 021937 247 H 247 (305)
Q Consensus 247 ~ 247 (305)
.
T Consensus 246 ~ 246 (249)
T PF05673_consen 246 A 246 (249)
T ss_pred h
Confidence 4
No 153
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.58 E-value=1.3e-12 Score=114.12 Aligned_cols=230 Identities=14% Similarity=0.153 Sum_probs=166.2
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCce
Q 021937 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASV 142 (305)
Q Consensus 64 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 142 (305)
.+...+..+..+.++++|+.-.=+...+..+.+.+...+ ....+..+++... ..+. +.......++.++ +
T Consensus 7 ~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~----l~~~~~t~~lF~~----~ 77 (340)
T PRK05574 7 QLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWDD----VLEACQSLPLFSD----R 77 (340)
T ss_pred HHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHHH----HHHHhhccCcccc----C
Confidence 445555555445589999986555566666666543322 3344555555432 2222 2233333333322 7
Q ss_pred EEEEEeCCCcCCHHH----HHHHHHHHHHhcCC--ceEEEEecCCc---cc---chhhhcceeEEEecCCCHHHHHHHHH
Q 021937 143 KLVLLDEADAMTKDA----QFALRRVIEKYTKN--TRFALICNQVN---KI---IPALQSRCTRFRFAPLEPVHVTERLK 210 (305)
Q Consensus 143 ~vliiDe~~~l~~~~----~~~l~~~l~~~~~~--~~iil~~~~~~---~l---~~~l~~r~~~i~~~~~~~~~~~~~l~ 210 (305)
.+++|++++.+.... ...+..++ .+++. ..+++.++..+ .+ .+.+..++..+.+.+++..++..++.
T Consensus 78 klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~ 156 (340)
T PRK05574 78 KLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQ 156 (340)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 899999999987542 23344444 33332 34444443322 22 45666778899999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc--CccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHH
Q 021937 211 HVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKR 288 (305)
Q Consensus 211 ~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 288 (305)
..+...|+.+++++++.+++.++||...+.+.+++++... +.||.++|++++......+++.+++++..++..+++..
T Consensus 157 ~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~ 236 (340)
T PRK05574 157 QRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRI 236 (340)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999988743 44999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 021937 289 IQNLSFIIRLVLFVL 303 (305)
Q Consensus 289 l~~l~~~~~~~~~~~ 303 (305)
++.+...+..++.++
T Consensus 237 l~~l~~~~~~~~~il 251 (340)
T PRK05574 237 LDGLRLEGEEPIKLL 251 (340)
T ss_pred HHHHHHCCCcHHHHH
Confidence 999999877776554
No 154
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.6e-14 Score=116.20 Aligned_cols=174 Identities=19% Similarity=0.246 Sum_probs=122.6
Q ss_pred CccccccchHHHHHHHHHHh----------cCC--CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC--c
Q 021937 51 SLADVAAHRDIVDTIDRLTS----------ENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--R 116 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~----------~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--~ 116 (305)
.|+++.|-+...+.|++.+- +.+ ...++|+||||+||+.||++++.+. ...|+.++.++. .
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-----nSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSK 205 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-----CCceEEeehHHHHHH
Confidence 68899999999999988742 333 3349999999999999999999987 467777777653 1
Q ss_pred ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH-----------HHHHHHHHHHHh---cCCceEEEEecCCc
Q 021937 117 GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD-----------AQFALRRVIEKY---TKNTRFALICNQVN 182 (305)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~---~~~~~iil~~~~~~ 182 (305)
+...-..++.++... .+..++.+|||||+|.+... ....|+--++.. ...+.++.+||-+.
T Consensus 206 WmGESEkLVknLFem-----ARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEM-----ARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HhccHHHHHHHHHHH-----HHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 222222333333222 23344799999999988521 112233334422 22334455678888
Q ss_pred ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 021937 183 KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG 234 (305)
Q Consensus 183 ~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 234 (305)
.++.++++|| .++.++-|....+...++..+......+++..+..+++.+.|
T Consensus 281 ~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 281 VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred hHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 9999999999 778998888888888888777666667889999999998876
No 155
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.58 E-value=1.3e-13 Score=127.07 Aligned_cols=207 Identities=18% Similarity=0.181 Sum_probs=141.5
Q ss_pred CCCccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (305)
...++.++|++..++.+.+.+... ...+++|+|++||||+++|+.+...... ....++.++|..... ..+...+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~-~~~~~~lf 268 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE-TLLESELF 268 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH-HHHHHHHc
Confidence 347889999999998888877643 2334999999999999999999987432 245788899886422 22222221
Q ss_pred HhhhcccccC--------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC------
Q 021937 127 DFASTQSFSF--------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV------ 181 (305)
Q Consensus 127 ~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~------ 181 (305)
... ...+.+ -..+.+++|+|||++.++...|..|++++++.. .++++|++++..
T Consensus 269 g~~-~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~ 347 (534)
T TIGR01817 269 GHE-KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVA 347 (534)
T ss_pred CCC-CCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHH
Confidence 100 000110 123457899999999999999999999998632 135677776432
Q ss_pred -cccchhhhcce--eEEEecCCC--HHHHHHHHHHHHHH----cC--CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhc
Q 021937 182 -NKIIPALQSRC--TRFRFAPLE--PVHVTERLKHVIEA----EG--LDVTEGGLAALVRLC-NGDMRKALNILQSTHMA 249 (305)
Q Consensus 182 -~~l~~~l~~r~--~~i~~~~~~--~~~~~~~l~~~~~~----~~--~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~ 249 (305)
..+.+.+..|+ ..+.++|+. .+++..++...+.+ .+ ..+++++++.+..+. +||+|.+.+.++.++..
T Consensus 348 ~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 348 KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 23455666665 357787776 35555554444432 22 468999999999884 99999999999988764
Q ss_pred c--CccCHHHHH
Q 021937 250 S--QQITEEAVY 259 (305)
Q Consensus 250 ~--~~i~~~~v~ 259 (305)
. ..|+.+++.
T Consensus 428 ~~~~~I~~~~l~ 439 (534)
T TIGR01817 428 SRSGTITRSDFS 439 (534)
T ss_pred CCCCcccHHHCc
Confidence 3 357777764
No 156
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.57 E-value=1.6e-13 Score=111.50 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=96.8
Q ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC-------------CcccchhhhcceeEEEecCCCHHHHHHH
Q 021937 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ-------------VNKIIPALQSRCTRFRFAPLEPVHVTER 208 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~-------------~~~l~~~l~~r~~~i~~~~~~~~~~~~~ 208 (305)
++|+||||+|.++-+....|.+.++.+- ...+|+++|+ +..+++++..|..++...+++.++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 5699999999999999999999998765 3455666542 3457889999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhh----c-cCccCHHHHHhhh
Q 021937 209 LKHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHM----A-SQQITEEAVYLCT 262 (305)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~----~-~~~i~~~~v~~~~ 262 (305)
++.+++.+++.++++++..+++.. ..++|.++++|.-+.. + .+.|..++|+++.
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 999999999999999999999864 4689999998853322 2 2357777776654
No 157
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.57 E-value=9.3e-14 Score=136.95 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=117.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC------------------------------------
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG------------------------------------ 117 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 117 (305)
+.+++|+||||||||.+|+++|.+. ..+++.+.+++...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es-----~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS-----YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc-----CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 3459999999999999999999987 44455544432110
Q ss_pred -----------hh--HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHH-----HHHHHHHHHHh-----cCCceE
Q 021937 118 -----------ID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA-----QFALRRVIEKY-----TKNTRF 174 (305)
Q Consensus 118 -----------~~--~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~-----~~~l~~~l~~~-----~~~~~i 174 (305)
.. .++..+..+ .+..|+||+|||+|.+.... ...|+..++.. ..++.|
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelA---------Rk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELA---------KAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHH---------HHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEE
Confidence 00 011122222 22347999999999997532 45566666532 234567
Q ss_pred EEEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHcCC-CHHHHHHHHHHHhh
Q 021937 175 ALICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG--GLAALVRLCNG-DMRKALNILQSTHM 248 (305)
Q Consensus 175 il~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~l~~~~~g-~~r~~~~~l~~~~~ 248 (305)
|.+||.++.++|++.+ |+ +.+.++.|+..+..+++.......++.+..+ .++.+++.+.| +.+.+.+++..++.
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7778999999999998 66 7789999988888887765555556655543 36788988866 34444455544443
Q ss_pred c-----cCccCHHHHHhhhCCC
Q 021937 249 A-----SQQITEEAVYLCTGNP 265 (305)
Q Consensus 249 ~-----~~~i~~~~v~~~~~~~ 265 (305)
. ...|+.++++.++.+.
T Consensus 1856 iAirq~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1856 ISITQKKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHcCCCccCHHHHHHHHHHH
Confidence 2 2358888888777554
No 158
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=9e-14 Score=131.78 Aligned_cols=207 Identities=20% Similarity=0.231 Sum_probs=135.5
Q ss_pred ccccchHHHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 54 DVAAHRDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
+..|.+.+++.+..++.. ...+.++|+||||+|||++++.++..+ ...++.++.........+...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l-----~~~~~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT-----GRKYVRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEEcCCCCCHHHhccchhc
Confidence 488889999988877652 344568999999999999999999987 334555554433333222221111
Q ss_pred hhhccc------ccCCCCCceEEEEEeCCCcCCHHH----HHHHHHHHHHhc---------------CCceEEEEecCCc
Q 021937 128 FASTQS------FSFGVKASVKLVLLDEADAMTKDA----QFALRRVIEKYT---------------KNTRFALICNQVN 182 (305)
Q Consensus 128 ~~~~~~------~~~~~~~~~~vliiDe~~~l~~~~----~~~l~~~l~~~~---------------~~~~iil~~~~~~ 182 (305)
+....+ +.. ......|++|||+|++.+.. ...|+.+++... .++.||+|+|..
T Consensus 398 ~~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~- 475 (784)
T PRK10787 398 YIGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM- 475 (784)
T ss_pred cCCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-
Confidence 110000 000 01124589999999998764 478999887421 345566666665
Q ss_pred ccchhhhcceeEEEecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHhh--
Q 021937 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEA----------EGLDVTEGGLAALVRLCN--GDMRKALNILQSTHM-- 248 (305)
Q Consensus 183 ~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~l~~~~~--g~~r~~~~~l~~~~~-- 248 (305)
.+++++++|+.++.|.+++.++..++++.++.. ..+.++++++..|++.+. --+|.+-..++..+.
T Consensus 476 ~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~ 555 (784)
T PRK10787 476 NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA 555 (784)
T ss_pred CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHH
Confidence 599999999999999999999999998877741 124688999999987542 113433333333221
Q ss_pred ------cc----CccCHHHHHhhhCCCCh
Q 021937 249 ------AS----QQITEEAVYLCTGNPLP 267 (305)
Q Consensus 249 ------~~----~~i~~~~v~~~~~~~~~ 267 (305)
.. -.++.+++.+.++....
T Consensus 556 l~~~~~~~~~~~v~v~~~~~~~~lg~~~~ 584 (784)
T PRK10787 556 VKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred HHHHHhcCCCceeeecHHHHHHHhCCCcc
Confidence 11 14888888888887654
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=1.3e-13 Score=132.82 Aligned_cols=193 Identities=19% Similarity=0.265 Sum_probs=133.4
Q ss_pred cccccchHHHHHHHHHHhcC--------C-CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021937 53 ADVAAHRDIVDTIDRLTSEN--------R-LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~--------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
..++||+..++.+...+... + ...++|+||+|+|||++|+.++..+.+.. ..++.++++..........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~--~~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE--DAMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhhcccchHHH
Confidence 46899999999998888642 1 22489999999999999999999986543 3456666554322222222
Q ss_pred HHHHhhhcccccC-------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc---
Q 021937 124 QIQDFASTQSFSF-------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN--- 182 (305)
Q Consensus 124 ~i~~~~~~~~~~~-------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~~--- 182 (305)
.+........+.. -...++.||+|||++.++++.++.|++++++.. .++.||++||...
T Consensus 643 l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~ 722 (852)
T TIGR03346 643 LIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFI 722 (852)
T ss_pred hcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhH
Confidence 1111101000000 012346799999999999999999999998652 4556888876421
Q ss_pred ----------------------ccchhhhcce-eEEEecCCCHHHHHHHHHHHHH-------Hc--CCCCCHHHHHHHHH
Q 021937 183 ----------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIE-------AE--GLDVTEGGLAALVR 230 (305)
Q Consensus 183 ----------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~-------~~--~~~~~~~~~~~l~~ 230 (305)
.+.+.|..|+ .++.|.|++.+++.+++..... .. .+.+++++++.|++
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~ 802 (852)
T TIGR03346 723 QELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAE 802 (852)
T ss_pred hhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHH
Confidence 1345677787 7899999999998888766554 22 24689999999998
Q ss_pred Hc---CCCHHHHHHHHHHHh
Q 021937 231 LC---NGDMRKALNILQSTH 247 (305)
Q Consensus 231 ~~---~g~~r~~~~~l~~~~ 247 (305)
.. .+++|.+.+.++...
T Consensus 803 ~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 803 AGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred hCCCCCCCchhHHHHHHHHH
Confidence 74 488999998887665
No 160
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.1e-14 Score=128.28 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=134.7
Q ss_pred CCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR 116 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
..+.++.|.....+.++..+.. ....+++|+||||||||.+++++++.. ...++.+..++..
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~ 313 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELL 313 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHh
Confidence 3567777777777766665431 223359999999999999999999976 5677777766422
Q ss_pred --ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHH--hcCCceEEEEecCC
Q 021937 117 --GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEK--YTKNTRFALICNQV 181 (305)
Q Consensus 117 --~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~--~~~~~~iil~~~~~ 181 (305)
........+......+ ....++||||||+|.+.. ...+.|+..++. ...++.+|.+||.+
T Consensus 314 sk~vGesek~ir~~F~~A-----~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p 388 (494)
T COG0464 314 SKWVGESEKNIRELFEKA-----RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRP 388 (494)
T ss_pred ccccchHHHHHHHHHHHH-----HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCc
Confidence 2333333333332222 122369999999999842 344556666653 23355667788999
Q ss_pred cccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCC-HHHHHHHHHHHhhc------c
Q 021937 182 NKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLCNGD-MRKALNILQSTHMA------S 250 (305)
Q Consensus 182 ~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~-~r~~~~~l~~~~~~------~ 250 (305)
+.+++++.+ |+ ..+.+++|+..+..++++..+...+.. ..+-.++.+++.+.|- ...+...++.++.. .
T Consensus 389 ~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~ 468 (494)
T COG0464 389 DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARR 468 (494)
T ss_pred cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999 88 679999999999999999998765543 2345567777766652 33333444444331 2
Q ss_pred CccCHHHHHhhhCC
Q 021937 251 QQITEEAVYLCTGN 264 (305)
Q Consensus 251 ~~i~~~~v~~~~~~ 264 (305)
..++.+++.++...
T Consensus 469 ~~~~~~~~~~a~~~ 482 (494)
T COG0464 469 REVTLDDFLDALKK 482 (494)
T ss_pred CCccHHHHHHHHHh
Confidence 24666666655544
No 161
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.57 E-value=7.1e-14 Score=115.36 Aligned_cols=184 Identities=18% Similarity=0.318 Sum_probs=108.3
Q ss_pred cccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH---------H
Q 021937 55 VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ---------I 125 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i 125 (305)
|+|+.+.++.|.+++.++..++++|+||.|+|||++++.+.+.+...+.. .+.+.............. +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYK--VVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EEC--CCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc--EEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 57999999999999998877889999999999999999999987443321 222222221111111111 0
Q ss_pred HH-hhhccc-cc----------C------------CCCCceEEEEEeCCCcCC------HHHHHHHHHHHHH--hcCCce
Q 021937 126 QD-FASTQS-FS----------F------------GVKASVKLVLLDEADAMT------KDAQFALRRVIEK--YTKNTR 173 (305)
Q Consensus 126 ~~-~~~~~~-~~----------~------------~~~~~~~vliiDe~~~l~------~~~~~~l~~~l~~--~~~~~~ 173 (305)
.. .....+ .. . .....+.+|+|||++.+. +.....|..+++. ...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 00 000000 00 0 011224899999999998 3445667777776 233556
Q ss_pred EEEEecCCc------ccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Q 021937 174 FALICNQVN------KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV--TEGGLAALVRLCNGDMRKALN 241 (305)
Q Consensus 174 iil~~~~~~------~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~~~~ 241 (305)
+|+++.... .-...+..|+..+.+++++.++..+++...+... ..+ +++.++.++..++|+|+.+..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 666654421 1233466777779999999999999999987766 544 999999999999999998753
No 162
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.56 E-value=3e-13 Score=116.56 Aligned_cols=199 Identities=17% Similarity=0.171 Sum_probs=130.9
Q ss_pred cccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcc
Q 021937 55 VAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ 132 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 132 (305)
++|++..++.+.+.+..- ...+++|+|++||||+++|+++...-.. ....|+.++|.... ...+...+.... ..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~-~~~l~~~lfG~~-~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS-ENLLDSELFGHE-AG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC-hHHHHHHHhccc-cc
Confidence 356666666666555532 2234999999999999999999876422 34578899988632 222222221100 00
Q ss_pred ccc--------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccch
Q 021937 133 SFS--------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIP 186 (305)
Q Consensus 133 ~~~--------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l~~ 186 (305)
.|. .-..+.+++|||||++.++...|..|+.++++.. .++++|++++.. ..+.+
T Consensus 77 ~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 77 AFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRA 156 (329)
T ss_pred cccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHH
Confidence 011 1123457899999999999999999999998642 345777777532 23556
Q ss_pred hhhcce--eEEEecCCCH--HHHHHHHHHHH----HHcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc--C
Q 021937 187 ALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEG----LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--Q 251 (305)
Q Consensus 187 ~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~----~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~--~ 251 (305)
+|..|+ ..+.++|+.. +++..++...+ .+.+ ..+++++++.+..+. +||+|.+.+.++.++... .
T Consensus 157 dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~ 236 (329)
T TIGR02974 157 DLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLE 236 (329)
T ss_pred HHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC
Confidence 777776 4577777763 45554444433 3333 358999999999876 999999999998887754 3
Q ss_pred ccCHHH
Q 021937 252 QITEEA 257 (305)
Q Consensus 252 ~i~~~~ 257 (305)
.++.++
T Consensus 237 ~~~~~~ 242 (329)
T TIGR02974 237 EAPIDE 242 (329)
T ss_pred ccchhh
Confidence 344443
No 163
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.56 E-value=2e-12 Score=114.25 Aligned_cols=236 Identities=14% Similarity=0.129 Sum_probs=140.3
Q ss_pred cccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH--HHHHhhh
Q 021937 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ--QIQDFAS 130 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~ 130 (305)
..++|+++.++.+...+..+ .+++|+||||+|||++|++++......+ .+.+....... ..++-. .+.....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ftt---p~DLfG~l~i~~~~~ 93 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFST---PEEVFGPLSIQALKD 93 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecC---cHHhcCcHHHhhhhh
Confidence 45889999999999888776 4599999999999999999999874322 11222211111 111111 0111110
Q ss_pred cccc---cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc---------CCceEEEEe-cCCcc---cchhhhcce-e
Q 021937 131 TQSF---SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT---------KNTRFALIC-NQVNK---IIPALQSRC-T 193 (305)
Q Consensus 131 ~~~~---~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~---------~~~~iil~~-~~~~~---l~~~l~~r~-~ 193 (305)
...+ ..+.-....++|+||++++++..++.|+..+++.. -..++++++ |.... ..+++..|+ .
T Consensus 94 ~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFli 173 (498)
T PRK13531 94 EGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLI 173 (498)
T ss_pred cCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEE
Confidence 0111 11111123499999999999999999999997532 123454444 43321 334788888 4
Q ss_pred EEEecCCC-HHHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHcC----------CCHHHH
Q 021937 194 RFRFAPLE-PVHVTERLKHVIE-----------------------AEGLDVTEGGLAALVRLCN----------GDMRKA 239 (305)
Q Consensus 194 ~i~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~l~~~~~----------g~~r~~ 239 (305)
.+.+++++ .++..+++..... -..+.+++.+.+.|++... -++|..
T Consensus 174 ri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~ 253 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRW 253 (498)
T ss_pred EEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHH
Confidence 58888886 4555666654211 0134567777777665531 357776
Q ss_pred HHHHH---HHhh--ccCccCHHHHHhhhCCC------ChhhHHHHHHHHHcccHHHHHHHHHHHHHH
Q 021937 240 LNILQ---STHM--ASQQITEEAVYLCTGNP------LPKDIEQISYWLLNESFADSFKRIQNLSFI 295 (305)
Q Consensus 240 ~~~l~---~~~~--~~~~i~~~~v~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~ 295 (305)
+..+. ..+. +...++++|+. ++... ....+...+..+......+....++.+...
T Consensus 254 ~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (498)
T PRK13531 254 KKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDAQSLNLLQQQLEQLMTEHAWQQQGMLTRLGAI 319 (498)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66553 3333 33569999998 54322 333555566666666666666665555443
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=4.6e-14 Score=105.86 Aligned_cols=113 Identities=30% Similarity=0.373 Sum_probs=80.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc--ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT 154 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 154 (305)
++|+||||+|||++++.+++.+ ...++.+++.... ......+.+........-.. .+.||+|||+|.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA----KPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS----TSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccccccccccccccccccccccccccccccccc----cceeeeeccchhcc
Confidence 6899999999999999999997 5667888776533 22222333333322211000 26999999999998
Q ss_pred HHH-----------HHHHHHHHHHhcC---CceEEEEecCCcccchhhh-cce-eEEEec
Q 021937 155 KDA-----------QFALRRVIEKYTK---NTRFALICNQVNKIIPALQ-SRC-TRFRFA 198 (305)
Q Consensus 155 ~~~-----------~~~l~~~l~~~~~---~~~iil~~~~~~~l~~~l~-~r~-~~i~~~ 198 (305)
... .+.|+..++.... +..+|++++..+.+++.+. +|| ..+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 775 6778888887654 4678888899999999999 888 445553
No 165
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-13 Score=110.42 Aligned_cols=168 Identities=19% Similarity=0.296 Sum_probs=117.8
Q ss_pred CccccccchHHHHHHHHHHh-------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC---
Q 021937 51 SLADVAAHRDIVDTIDRLTS-------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD--- 114 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~--- 114 (305)
.++++-|-+..++.|.+.+- -..+..+++|||||+|||.++++.+.... ..|..+.++.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~-----aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN-----ATFLKLAGPQLVQ 243 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-----chHHHhcchHHHh
Confidence 56788888888888877653 12344599999999999999999998752 2333332221
Q ss_pred ---CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh-----cCCceEE
Q 021937 115 ---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFA 175 (305)
Q Consensus 115 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~ii 175 (305)
..+...++..+.-+.. ..+.+|||||+|.+. .+.+..++.+++.. ...+.+|
T Consensus 244 MfIGdGAkLVRDAFaLAKE---------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKE---------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred hhhcchHHHHHHHHHHhhc---------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 1233344444433333 336999999999884 23566667776643 3456788
Q ss_pred EEecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 021937 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN 233 (305)
Q Consensus 176 l~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 233 (305)
.++|+.+-++|++.+.. +.+.|+.|+.+....+++....+.++. ++-.++++++.+.
T Consensus 315 AATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTd 374 (424)
T KOG0652|consen 315 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTD 374 (424)
T ss_pred eecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhccc
Confidence 89999999999998764 669999999999999999888877753 2334677887664
No 166
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.55 E-value=1e-13 Score=114.41 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=111.0
Q ss_pred eEEEEe--cCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021937 173 RFALIC--NQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE------GLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 173 ~iil~~--~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
.+|.+| |....+.+++++||+++.|++++.+++..++++.+... .+.+++++++.|++.++||.|.++|.|+
T Consensus 10 ~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~LE 89 (300)
T PRK14700 10 ILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLLE 89 (300)
T ss_pred EEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444 55568899999999999999999999999999988642 3578999999999999999999999999
Q ss_pred HHhhc-c--C--ccCHHHHHhhh----------CCCChhhHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Q 021937 245 STHMA-S--Q--QITEEAVYLCT----------GNPLPKDIEQISYWLLNESFADSFKRIQNLSFIIRLVLFV 302 (305)
Q Consensus 245 ~~~~~-~--~--~i~~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 302 (305)
.++.. . . .||.+.+++.+ ++..++.++.++..|+++|+++|+.|+..|+..+.+|.++
T Consensus 90 ~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~I 162 (300)
T PRK14700 90 RMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVI 162 (300)
T ss_pred HHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHH
Confidence 86642 1 1 28999988766 5567889999999999999999999999999999888876
No 167
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.8e-14 Score=111.59 Aligned_cols=169 Identities=23% Similarity=0.357 Sum_probs=123.0
Q ss_pred CccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC--
Q 021937 51 SLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 115 (305)
.+.++-|..+.++.+++...- ..+..+++|||||+|||.+|++++++. ..+|+.+-++..
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigselvq 249 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSELVQ 249 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhHHHHH
Confidence 578899999999999888752 234459999999999999999999986 667887765541
Q ss_pred ----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHH-----hcCCceEE
Q 021937 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEK-----YTKNTRFA 175 (305)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~-----~~~~~~ii 175 (305)
.+...+++.+.- ....+-++||+||+|.+. .+.+..++.++.. +..+..++
T Consensus 250 kyvgegarmvrelf~m---------artkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEM---------ARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHhhhhHHHHHHHHHH---------hcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 122222222222 223346999999999874 3566777777764 34577899
Q ss_pred EEecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCC
Q 021937 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALVRLCNGD 235 (305)
Q Consensus 176 l~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~ 235 (305)
+++|+++.+++++.+-. +.+.|.-|+.+....+++..++... ++.+. ++.|+++|+..
T Consensus 321 matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms--verdir~ellarlcpns 382 (435)
T KOG0729|consen 321 MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--VERDIRFELLARLCPNS 382 (435)
T ss_pred eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc--cccchhHHHHHhhCCCC
Confidence 99999999999998754 5699999999988888887766544 44443 56677887643
No 168
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.55 E-value=7e-14 Score=131.86 Aligned_cols=203 Identities=25% Similarity=0.412 Sum_probs=159.9
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcC------------CC--C--eEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN------------RL--P--HLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~--~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
...|.++|+|.+..++.|+......+..++... .. . .++++||||+|||+.+..++..+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 578999999999999999888887888877654 11 1 14899999999999999999998
Q ss_pred cccEEEeecCCCcChhHHHHHHHHhhhcccccCC---------CCCceEEEEEeCCCcCCHHH---HHHHHHHHHHhcCC
Q 021937 104 HNMILELNASDDRGIDVVRQQIQDFASTQSFSFG---------VKASVKLVLLDEADAMTKDA---QFALRRVIEKYTKN 171 (305)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~~vliiDe~~~l~~~~---~~~l~~~l~~~~~~ 171 (305)
...+++.|....+....+.+.+..+.......+. .+....||++||+|.+..+. +..+..++. ...
T Consensus 382 g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~ 459 (871)
T KOG1968|consen 382 GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSS 459 (871)
T ss_pred ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hcc
Confidence 6689999999877777777777665544432221 23334599999999998744 445555555 235
Q ss_pred ceEEEEecCCcccch-hhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhc
Q 021937 172 TRFALICNQVNKIIP-ALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA 249 (305)
Q Consensus 172 ~~iil~~~~~~~l~~-~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 249 (305)
..+++++|+...... .+.+.|..++|+.|+...+...+..++..+++.++++.++.+.+.++||+|.+++.|+.+...
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 667888877655433 455556889999999999999999999999999999999999999999999999999999653
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=3.2e-13 Score=129.79 Aligned_cols=194 Identities=18% Similarity=0.260 Sum_probs=129.4
Q ss_pred ccccccchHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHH
Q 021937 52 LADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122 (305)
Q Consensus 52 ~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (305)
...++|++..++.+...+... ++ ..++|+||+|+|||++|+++++.+...+ ..++.++++.........
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~--~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD--DAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC--CcEEEEEhHHhhhhhhHH
Confidence 457899999999888887632 11 2489999999999999999999885433 245666654432211111
Q ss_pred HHHHHhhhcccccC-------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC---
Q 021937 123 QQIQDFASTQSFSF-------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV--- 181 (305)
Q Consensus 123 ~~i~~~~~~~~~~~-------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~--- 181 (305)
..+.....+..+.. -...+++||+|||++.+++..++.|++++++.. .++.+|+++|..
T Consensus 645 ~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~ 724 (857)
T PRK10865 645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDL 724 (857)
T ss_pred HHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHH
Confidence 11110000000000 012235899999999999999999999998642 344577777642
Q ss_pred ----------------------cccchhhhcce-eEEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHH
Q 021937 182 ----------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------EG--LDVTEGGLAALV 229 (305)
Q Consensus 182 ----------------------~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~ 229 (305)
..+.|.|.+|+ .++.|.|++.+++.+++...+.. .+ +.+++++++.|+
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~ 804 (857)
T PRK10865 725 IQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLS 804 (857)
T ss_pred HHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHH
Confidence 12346788888 88999999999998887766643 13 457999999999
Q ss_pred HHcC---CCHHHHHHHHHHHh
Q 021937 230 RLCN---GDMRKALNILQSTH 247 (305)
Q Consensus 230 ~~~~---g~~r~~~~~l~~~~ 247 (305)
++.. -..|.+.+.++...
T Consensus 805 ~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 805 ENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred HcCCCccCChHHHHHHHHHHH
Confidence 8652 13666666665543
No 170
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.5e-14 Score=115.13 Aligned_cols=199 Identities=19% Similarity=0.277 Sum_probs=133.7
Q ss_pred CCCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 48 RPQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
...++.++-|-+..++.+++...- ..+..+++||+||+|||.||+++++.. +..|+.+-++.
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-----SATFlRvvGse 254 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-----SATFLRVVGSE 254 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-----chhhhhhhhHH
Confidence 344788999999999999888652 234459999999999999999999975 44455544432
Q ss_pred ------CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHh-----cCCc
Q 021937 115 ------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-----TKNT 172 (305)
Q Consensus 115 ------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~-----~~~~ 172 (305)
..+...+++.+.-+.... +.++||||+|.+.. +.|..++.+++.. ..++
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~a---------pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDv 325 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEHA---------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhcC---------CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCe
Confidence 234555666655554433 69999999998852 3466677777643 3578
Q ss_pred eEEEEecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHH----HHcCCCHHHHHHHHH
Q 021937 173 RFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGG-LAALV----RLCNGDMRKALNILQ 244 (305)
Q Consensus 173 ~iil~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~----~~~~g~~r~~~~~l~ 244 (305)
.+|++||..+.++|++.+-. +.+.|+.|+....++++.....+.. +..++ ++.+. ..++.|+..+....-
T Consensus 326 KvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt--l~~dVnle~li~~kddlSGAdIkAictEaG 403 (440)
T KOG0726|consen 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT--LAEDVNLEELIMTKDDLSGADIKAICTEAG 403 (440)
T ss_pred EEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc--hhccccHHHHhhcccccccccHHHHHHHHh
Confidence 99999999999999998754 5699999999888888766544333 22221 22222 345566666555544
Q ss_pred HHhhcc--CccCHHHHHhhh
Q 021937 245 STHMAS--QQITEEAVYLCT 262 (305)
Q Consensus 245 ~~~~~~--~~i~~~~v~~~~ 262 (305)
.++... ..++.++++++.
T Consensus 404 llAlRerRm~vt~~DF~ka~ 423 (440)
T KOG0726|consen 404 LLALRERRMKVTMEDFKKAK 423 (440)
T ss_pred HHHHHHHHhhccHHHHHHHH
Confidence 444322 346666655443
No 171
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.55 E-value=6.1e-13 Score=116.98 Aligned_cols=205 Identities=19% Similarity=0.247 Sum_probs=142.7
Q ss_pred CccccccchHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021937 51 SLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
...+++|++..++++++.+..-. ..+++|+|++||||-.+|++|.+.-. ....+|+.+||... ..+.+.+.+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~--R~~~PFVavNcaAi-p~~l~ESELFGh 215 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASP--RAKGPFIAVNCAAI-PENLLESELFGH 215 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCc--ccCCCceeeecccC-CHHHHHHHhhcc
Confidence 56789999999999999887532 23499999999999999999988643 33467999999873 333333323221
Q ss_pred hhcccccCC--------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------c
Q 021937 129 ASTQSFSFG--------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------N 182 (305)
Q Consensus 129 ~~~~~~~~~--------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~ 182 (305)
.. ..|++. ..+.++.|||||+..++-+.|..|++.+++.. -+++||.+|+.. .
T Consensus 216 ek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G 294 (464)
T COG2204 216 EK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAG 294 (464)
T ss_pred cc-cCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcC
Confidence 11 112222 23667899999999999999999999999532 356777777542 2
Q ss_pred ccchhhhcceeEEE--ecCCCH--HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc
Q 021937 183 KIIPALQSRCTRFR--FAPLEP--VHV----TERLKHVIEAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 183 ~l~~~l~~r~~~i~--~~~~~~--~~~----~~~l~~~~~~~~~---~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 250 (305)
.+-++|.-|..++. ++|+.+ +++ ..++++.+.+.|. .+++++++.+..+. +||+|.+.|.++.++...
T Consensus 295 ~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 295 RFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 45677777875554 444433 233 3344555555543 57899998888764 999999999999888754
Q ss_pred C--ccCHHHHH
Q 021937 251 Q--QITEEAVY 259 (305)
Q Consensus 251 ~--~i~~~~v~ 259 (305)
. .|+.+++.
T Consensus 375 ~~~~i~~~~l~ 385 (464)
T COG2204 375 EGPEIEVEDLP 385 (464)
T ss_pred Cccccchhhcc
Confidence 3 47776654
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=2.3e-13 Score=130.90 Aligned_cols=192 Identities=21% Similarity=0.250 Sum_probs=127.0
Q ss_pred cccccchHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHH
Q 021937 53 ADVAAHRDIVDTIDRLTSEN--------RL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 123 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
+.++||++.++.+...+... ++ ..++|+||+|+|||++|+++++.+.+.. ..++.++.+.......+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE--DAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--cceEEEEchhccccccHHH
Confidence 56889999999998877521 12 2389999999999999999999986543 2455555443222111111
Q ss_pred HHHHhhhcccccC-------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc---
Q 021937 124 QIQDFASTQSFSF-------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN--- 182 (305)
Q Consensus 124 ~i~~~~~~~~~~~-------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~~--- 182 (305)
.+.....+..+.. -...+.+||+|||+|++.++.++.|++++++.. .++.||+++|...
T Consensus 587 l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i 666 (821)
T CHL00095 587 LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVI 666 (821)
T ss_pred hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHH
Confidence 1111000000000 012346899999999999999999999999742 4667888865211
Q ss_pred ----------------------------------ccchhhhcce-eEEEecCCCHHHHHHHHHHHHHH-------cC--C
Q 021937 183 ----------------------------------KIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA-------EG--L 218 (305)
Q Consensus 183 ----------------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~ 218 (305)
.+.|.|.+|+ .++.|.|++.+++.+++...+.. .+ +
T Consensus 667 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l 746 (821)
T CHL00095 667 ETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQL 746 (821)
T ss_pred HhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 0235678888 88999999999999888766653 23 4
Q ss_pred CCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Q 021937 219 DVTEGGLAALVRLCN---GDMRKALNILQST 246 (305)
Q Consensus 219 ~~~~~~~~~l~~~~~---g~~r~~~~~l~~~ 246 (305)
.+++++.+.|++.+. --.|.+...++..
T Consensus 747 ~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 747 EVTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred EECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 678999999998741 1255555555433
No 173
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.54 E-value=5.9e-13 Score=114.21 Aligned_cols=218 Identities=13% Similarity=0.176 Sum_probs=136.1
Q ss_pred hcCCC-CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCc--ccEEEeecCC--------
Q 021937 46 KYRPQ-SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASD-------- 114 (305)
Q Consensus 46 ~~~p~-~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~~~~~~-------- 114 (305)
+-++. .|..++||++.+..|...+......+++|.|++|+|||++++.+.+.+.+.... ..|. ..+.
T Consensus 9 ~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~--~~p~~p~~~~~~ 86 (350)
T CHL00081 9 KERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN--SHPSDPELMSDE 86 (350)
T ss_pred ccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC--CCCCChhhhchh
Confidence 33444 689999999999999999988877789999999999999999998887532200 0010 0000
Q ss_pred -------------------------CcChhH------HHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHH
Q 021937 115 -------------------------DRGIDV------VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 163 (305)
Q Consensus 115 -------------------------~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 163 (305)
....+. +...+.........+.-.++++++|++||++.+++..+..|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLe 166 (350)
T CHL00081 87 VREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLD 166 (350)
T ss_pred hhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHH
Confidence 000000 0111110000000001124567899999999999999999999
Q ss_pred HHHHhc-----------CCceEEEEe--cCCc-ccchhhhcce-eEEEecCCCH-HHHHHHHHHHHH-------------
Q 021937 164 VIEKYT-----------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIE------------- 214 (305)
Q Consensus 164 ~l~~~~-----------~~~~iil~~--~~~~-~l~~~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~------------- 214 (305)
.+++.. ...++++++ |..+ .+.+.+..|+ ..+.+..++. ++..+++.+...
T Consensus 167 am~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~ 246 (350)
T CHL00081 167 SAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYE 246 (350)
T ss_pred HHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhc
Confidence 997631 123444443 3222 5788888998 5677777763 555555544211
Q ss_pred ----------------HcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHhh-----ccCccCHHHHHhhhCCC
Q 021937 215 ----------------AEGLDVTEGGLAALVRLCN----GDMRKALNILQSTHM-----ASQQITEEAVYLCTGNP 265 (305)
Q Consensus 215 ----------------~~~~~~~~~~~~~l~~~~~----g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~~~ 265 (305)
-..+.++++.++++++.+. -.+|..+.+++.+.. ....++++||+.+....
T Consensus 247 ~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 247 ESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred cccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 0245688888888777652 258887777754332 23569999998877443
No 174
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.54 E-value=9e-13 Score=113.14 Aligned_cols=214 Identities=14% Similarity=0.165 Sum_probs=129.5
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC-------CCC----cccEEEe---------
Q 021937 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-------AQY----HNMILEL--------- 110 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-------~~~----~~~~~~~--------- 110 (305)
.|..++|+++.+..|.-.+-.....+++|.|++|+||||++++++..+.. +.. ...++..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 37789999999998877776666677999999999999999999987721 000 0000000
Q ss_pred -------------ecCC------CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc--
Q 021937 111 -------------NASD------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-- 169 (305)
Q Consensus 111 -------------~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-- 169 (305)
+-+. ..+...+...+..-......+.-.++.++++++||++.++...+..|++.+++..
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 0000 0011111111111100000011123557899999999999999999999998642
Q ss_pred ---------CCceEEEEe--cCCc-ccchhhhcce-eEEEecCCCH-HHHHHHHHHHHH---------------------
Q 021937 170 ---------KNTRFALIC--NQVN-KIIPALQSRC-TRFRFAPLEP-VHVTERLKHVIE--------------------- 214 (305)
Q Consensus 170 ---------~~~~iil~~--~~~~-~l~~~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~--------------------- 214 (305)
...++++++ |..+ .+.+++..|+ ..+.+.++.. ++..+++.....
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 122344433 3222 5788899998 5677777765 565566655211
Q ss_pred --------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHhh-----ccCccCHHHHHhhhCC
Q 021937 215 --------AEGLDVTEGGLAALVRLC---NG-DMRKALNILQSTHM-----ASQQITEEAVYLCTGN 264 (305)
Q Consensus 215 --------~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~~ 264 (305)
-..+.+++++++++++.+ +. .+|..+..+..+.. ....+++++|+.+..-
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~ 308 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVL 308 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 024567888877777644 32 47877777654333 2356999999876643
No 175
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=7.6e-12 Score=99.91 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=132.1
Q ss_pred HHHHHHHHhcCCCCe-EEEECCCC-CcHHHHHHHHHHHHhCCC----CcccEEEeecC-------CCcChhHHHHHHHHh
Q 021937 62 VDTIDRLTSENRLPH-LLLYGPPG-TGKTSTILAVARKLYGAQ----YHNMILELNAS-------DDRGIDVVRQQIQDF 128 (305)
Q Consensus 62 ~~~l~~~l~~~~~~~-~ll~G~~G-~GKT~l~~~l~~~~~~~~----~~~~~~~~~~~-------~~~~~~~~~~~i~~~ 128 (305)
++.+.+.++.++..| +++.|..+ +||..++..++..+.+.+ ....+..+... ..-+.+.+++....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 457888889888888 89999998 999999999999886642 22234444332 224567777765554
Q ss_pred hhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHH
Q 021937 129 ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTER 208 (305)
Q Consensus 129 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~ 208 (305)
...+ ..++.+|++|+++|.+...+.++|++.+|++|+++.++++++....+.+++++||+.+.|+.++.....++
T Consensus 82 ~~~p-----~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 82 SKTS-----AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNEL 156 (263)
T ss_pred hhCc-----ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHH
Confidence 3332 23348999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 021937 209 LKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (305)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 245 (305)
....+.-. .+..-++.|.+...-|......-.+.
T Consensus 157 ~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~~ 190 (263)
T PRK06581 157 YSQFIQPI---ADNKTLDFINRFTTKDRELWLDFIDN 190 (263)
T ss_pred HHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHHH
Confidence 76654322 34444677777655554444443333
No 176
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.7e-13 Score=116.77 Aligned_cols=197 Identities=21% Similarity=0.303 Sum_probs=138.5
Q ss_pred CccccccchHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhH-HHHHH
Q 021937 51 SLADVAAHRDIVDTIDRLTSE----NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV-VRQQI 125 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 125 (305)
....+.|++.....++.++.. .....++++|.||+|||.+...+...+.+.......++++|........ +...+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 446788999998888888653 4555699999999999999999999887777777788888886433222 22222
Q ss_pred HHhhhccc-----------ccC--CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-CCceEEEE--ecCC---cccch
Q 021937 126 QDFASTQS-----------FSF--GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALI--CNQV---NKIIP 186 (305)
Q Consensus 126 ~~~~~~~~-----------~~~--~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~iil~--~~~~---~~l~~ 186 (305)
..+..... |.. ......-|+++||.|.+....+..|+.+++++. .+.+++++ +|.. +++.+
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 22211100 000 011246899999999999888889999888643 24444444 4544 45667
Q ss_pred hhhcce----eEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc---CCCHHHHHHHHHHHh
Q 021937 187 ALQSRC----TRFRFAPLEPVHVTERLKHVIEAEGLD-VTEGGLAALVRLC---NGDMRKALNILQSTH 247 (305)
Q Consensus 187 ~l~~r~----~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~---~g~~r~~~~~l~~~~ 247 (305)
.+..++ +++.|+||+.+++.+|+.+++...... +-..+++.+++.+ .||+|.|+..++.+.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 776642 779999999999999999998877543 3344677777654 699999999998544
No 177
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=1.8e-13 Score=118.23 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=136.5
Q ss_pred CCccccccchHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
..+..++|.+...+.+++.++...+ .++++.|++|+||+.+|+.+...- ......+++.+||+.........+.+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s-~r~~~~PFI~~NCa~~~en~~~~eLFG~ 153 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS-ARRAEAPFIAFNCAAYSENLQEAELFGH 153 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh-hcccCCCEEEEEHHHhCcCHHHHHHhcc
Confidence 4578899999988888888876433 239999999999999999999433 2226778999999876544433332221
Q ss_pred hhhcccccC--------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHH-----------hcCCceEEEEecCC--cccch
Q 021937 128 FASTQSFSF--------GVKASVKLVLLDEADAMTKDAQFALRRVIEK-----------YTKNTRFALICNQV--NKIIP 186 (305)
Q Consensus 128 ~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-----------~~~~~~iil~~~~~--~~l~~ 186 (305)
.... |.+ =..+.++.+++||++.++...|..|+.++++ .+.++++|++|+.. ..+..
T Consensus 154 ~kGa--ftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 154 EKGA--FTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred ccce--eecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHh
Confidence 1110 111 1346678999999999999999999999997 23567777776532 33444
Q ss_pred --hhhcce--eEEEecCCCHH--HHHH----HHHHHHHHcCCCC---CHHHHHHHHHH-cCCCHHHHHHHHHHHhhcc
Q 021937 187 --ALQSRC--TRFRFAPLEPV--HVTE----RLKHVIEAEGLDV---TEGGLAALVRL-CNGDMRKALNILQSTHMAS 250 (305)
Q Consensus 187 --~l~~r~--~~i~~~~~~~~--~~~~----~l~~~~~~~~~~~---~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 250 (305)
++..|. ..+++||+.+. ++.. +++..+.+.+..+ ++++...+..+ +.||+|.+.|.++.++..+
T Consensus 232 g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 232 GADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 666643 56788877653 3333 3445555556543 33566666655 5899999999999888744
No 178
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.52 E-value=6.2e-13 Score=126.81 Aligned_cols=176 Identities=20% Similarity=0.289 Sum_probs=121.2
Q ss_pred CCCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD 115 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (305)
..+|+++.|.+..++.+.+.+.. ..+.+++|+||||||||++++++++.+ ...++.+++...
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-----~~~~i~i~~~~i 248 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-----GAYFISINGPEI 248 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEecHHH
Confidence 35788999999999998887642 223459999999999999999999987 344666665431
Q ss_pred c------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHhcC--CceEEE
Q 021937 116 R------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTK--NTRFAL 176 (305)
Q Consensus 116 ~------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~~--~~~iil 176 (305)
. ....++..+..+.. ..+.+|+|||+|.+.. ..+..|+.+++.... .+.+|.
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~---------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEE---------NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred hcccccHHHHHHHHHHHHHHh---------cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 1 11223333333322 1258999999988742 245667888876543 334455
Q ss_pred EecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Q 021937 177 ICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVT-EGGLAALVRLCNGDMRKAL 240 (305)
Q Consensus 177 ~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~ 240 (305)
+++....+++.+++ |+ ..+.++.|+.++..++++.... +..+. +..++.+++.+.|-...-+
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl 385 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADL 385 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHHHH
Confidence 67888888888876 55 6789999999999999986654 33343 3347888888887544433
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-13 Score=123.98 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=137.6
Q ss_pred ccccchHHHHHHHHHHh------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 54 DVAAHRDIVDTIDRLTS------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
+--|-+.+++++.+++. .-+.+.++|+||||+|||++++.+|+.+ .-.|+.+.........+++..-.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al-----~RkfvR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL-----GRKFVRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-----CCCEEEEecCccccHHHhcccccc
Confidence 34566777777777664 3345669999999999999999999998 445666666554444444333222
Q ss_pred hhhccc-----ccCCCCCceEEEEEeCCCcCCHH----HHHHHHHHHHHh-c--------------CCceEEEEecCCcc
Q 021937 128 FASTQS-----FSFGVKASVKLVLLDEADAMTKD----AQFALRRVIEKY-T--------------KNTRFALICNQVNK 183 (305)
Q Consensus 128 ~~~~~~-----~~~~~~~~~~vliiDe~~~l~~~----~~~~l~~~l~~~-~--------------~~~~iil~~~~~~~ 183 (305)
+....+ -........-|++|||+|+++.+ -..+|+..++.- + .++.||.|+|..+.
T Consensus 399 YIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t 478 (782)
T COG0466 399 YIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT 478 (782)
T ss_pred ccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc
Confidence 221111 00001122459999999999743 356788777621 1 35678888899999
Q ss_pred cchhhhcceeEEEecCCCHHHHHHHHHHHHH-----HcC-----CCCCHHHHHHHHHHcC--CCHHHHHHHHHHHhh---
Q 021937 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIE-----AEG-----LDVTEGGLAALVRLCN--GDMRKALNILQSTHM--- 248 (305)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~~-----~~~~~~~~~~l~~~~~--g~~r~~~~~l~~~~~--- 248 (305)
++..|..|..++.+..++.+|-.++.++++- ..| +.++++++..|.++.. .-+|.+-..+...|.
T Consensus 479 IP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~ 558 (782)
T COG0466 479 IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAA 558 (782)
T ss_pred CChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777553 233 4688999888876542 225555544443332
Q ss_pred -----cc----CccCHHHHHhhhCCCC
Q 021937 249 -----AS----QQITEEAVYLCTGNPL 266 (305)
Q Consensus 249 -----~~----~~i~~~~v~~~~~~~~ 266 (305)
.. -.++...+++.++...
T Consensus 559 ~~i~~~~~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 559 KKILLKKEKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HHHHhcCcccceeeCHHHHHHHhCCcc
Confidence 11 1367777777776543
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.52 E-value=1.3e-12 Score=112.78 Aligned_cols=196 Identities=18% Similarity=0.164 Sum_probs=131.1
Q ss_pred ccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhh
Q 021937 52 LADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (305)
Q Consensus 52 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (305)
++.++|.+..++.+.+.+... ...+++|+|++||||+++|+.+...- ......++.++|.... ...+...+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~~-~~~~~~~lfg~~ 81 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELFGHE 81 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCCC-HHHHHHHHcccc
Confidence 567889888888777776642 22349999999999999999998653 2234578899988743 233322221111
Q ss_pred hcc-------cccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------ccc
Q 021937 130 STQ-------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKI 184 (305)
Q Consensus 130 ~~~-------~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l 184 (305)
... ....-..+.+++|+|||++.++...+..|+.+++... .++++|++++.. ..+
T Consensus 82 ~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f 161 (326)
T PRK11608 82 AGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKF 161 (326)
T ss_pred ccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCc
Confidence 000 0011123457899999999999999999999998532 245677766432 245
Q ss_pred chhhhcce--eEEEecCCCH--HHHHHHHHHH----HHHcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc
Q 021937 185 IPALQSRC--TRFRFAPLEP--VHVTERLKHV----IEAEG----LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 185 ~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~----~~~~~----~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 250 (305)
.+.+..|+ ..+.++|+.. +++..++..+ +.+.+ ..+++++++.+.++. +||+|.+.+.++.++...
T Consensus 162 ~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 162 RADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 56777776 4577777765 3444444443 33333 247999999988765 899999999999887643
No 181
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.52 E-value=7.8e-13 Score=121.01 Aligned_cols=206 Identities=18% Similarity=0.204 Sum_probs=137.7
Q ss_pred CCCccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (305)
...|++++|.+..++.+...+.. ....+++|+|++||||+++|+++..... .....++.++|+... .+.+...+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~-~~~~e~elF 276 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIP-DDVVESELF 276 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCC-HHHHHHHhc
Confidence 35789999998877777666653 2233499999999999999999876532 223578888988743 222222221
Q ss_pred HhhhcccccC--------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC------
Q 021937 127 DFASTQSFSF--------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV------ 181 (305)
Q Consensus 127 ~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~------ 181 (305)
.... ..+.. -..+..++|+|||++.++...|..|++++++.. .++++|++++..
T Consensus 277 G~~~-~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 277 GHAP-GAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred CCCC-CCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 1000 00100 012456899999999999999999999998631 234677766432
Q ss_pred -cccchhhhcce--eEEEecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHhh
Q 021937 182 -NKIIPALQSRC--TRFRFAPLEP--VHVTER----LKHVIEAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTHM 248 (305)
Q Consensus 182 -~~l~~~l~~r~--~~i~~~~~~~--~~~~~~----l~~~~~~~~~---~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~ 248 (305)
..+.+.+..|+ ..+.+||+.+ +++..+ +.+.+.+.|. .+++++++.+.++ .+||+|.+.+.++.++.
T Consensus 356 ~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 356 KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 23456677775 5577777765 344433 4444444443 6899999999988 79999999999988876
Q ss_pred cc--CccCHHHH
Q 021937 249 AS--QQITEEAV 258 (305)
Q Consensus 249 ~~--~~i~~~~v 258 (305)
.. ..|+.+++
T Consensus 436 ~~~~~~i~~~~~ 447 (520)
T PRK10820 436 QLEGYELRPQDI 447 (520)
T ss_pred hCCCCcccHHHc
Confidence 43 35777775
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.51 E-value=5.1e-13 Score=101.92 Aligned_cols=140 Identities=31% Similarity=0.397 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccC
Q 021937 57 AHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF 136 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 136 (305)
|++..+..+...+......+++++||+|+|||++++.+++.+...+ ..++.+++........................
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHHHHhhhhhHhHHHHh
Confidence 6778888888888876667799999999999999999999885433 34445544432222221111110000000011
Q ss_pred CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc------CCceEEEEecCCc--ccchhhhcce-eEEEec
Q 021937 137 GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------KNTRFALICNQVN--KIIPALQSRC-TRFRFA 198 (305)
Q Consensus 137 ~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------~~~~iil~~~~~~--~l~~~l~~r~-~~i~~~ 198 (305)
....++.++++||++.+.......+...++... ....++++++... .+.+.+.+|+ ..+.++
T Consensus 80 ~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 122336899999999998777788888888653 4667777776665 6778888887 556554
No 183
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.50 E-value=1.5e-12 Score=118.37 Aligned_cols=208 Identities=18% Similarity=0.210 Sum_probs=139.6
Q ss_pred CCccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
..|++++|.+..++.+.+.+.. ....+++|+|++||||+.+|+.+.+.-. .....++.++|..... ..+...+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~--r~~~pfv~inC~~l~e-~lleseLFG 285 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG--RRDFPFVAINCGAIAE-SLLEAELFG 285 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC--cCCCCEEEeccccCCh-hHHHHHhcC
Confidence 4678899999988888888763 2334599999999999999999987642 2345788999886432 222222211
Q ss_pred hhhcccccCC---------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC------
Q 021937 128 FASTQSFSFG---------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV------ 181 (305)
Q Consensus 128 ~~~~~~~~~~---------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~------ 181 (305)
... ..|.+. ..+.++.|||||++.++...|..|++++++.. .++++|++++..
T Consensus 286 ~~~-gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~ 364 (526)
T TIGR02329 286 YEE-GAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ 364 (526)
T ss_pred Ccc-cccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh
Confidence 100 011111 12457899999999999999999999998532 234677776433
Q ss_pred -cccchhhhcce--eEEEecCCCH--HHHHHHHHHHH----HHcCCCCCHHHHHH-------HHHH-cCCCHHHHHHHHH
Q 021937 182 -NKIIPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEGLDVTEGGLAA-------LVRL-CNGDMRKALNILQ 244 (305)
Q Consensus 182 -~~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~~~~~~~~~~~-------l~~~-~~g~~r~~~~~l~ 244 (305)
..+.+++..|+ ..+.+||+.+ +++..++..++ ...+..++++++.. +.++ .+||+|.+.+.++
T Consensus 365 ~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvie 444 (526)
T TIGR02329 365 QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVE 444 (526)
T ss_pred hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 13344555565 4577877765 35544444443 34466788888776 6554 4899999999999
Q ss_pred HHhhcc-----CccCHHHHHhh
Q 021937 245 STHMAS-----QQITEEAVYLC 261 (305)
Q Consensus 245 ~~~~~~-----~~i~~~~v~~~ 261 (305)
.++... ..|+.+++...
T Consensus 445 r~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 445 RLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHhcccCCCCccCHHHhhhh
Confidence 887632 45888876543
No 184
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-12 Score=118.05 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=127.2
Q ss_pred CccccccchHHHHHHHHHHhcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc-
Q 021937 51 SLADVAAHRDIVDTIDRLTSEN-------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR- 116 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 116 (305)
.++++-|..+.++.|++.+... ...+++||||||||||.+|.+++... ...++.+.++...
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----NLRFISVKGPELLS 739 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----CeeEEEecCHHHHH
Confidence 5678889888888888887631 12349999999999999999999876 6678887766421
Q ss_pred -ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHH--hcCCceEEEEecCCc
Q 021937 117 -GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEK--YTKNTRFALICNQVN 182 (305)
Q Consensus 117 -~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~--~~~~~~iil~~~~~~ 182 (305)
-+..-.+.+......+ ..++++++|+||+|.+.+ ...+.|+.-++. .-..+.++.+|.+++
T Consensus 740 KyIGaSEq~vR~lF~rA-----~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERA-----QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPD 814 (952)
T ss_pred HHhcccHHHHHHHHHHh-----hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcc
Confidence 1112223333333322 334579999999999954 346777777773 333445555677888
Q ss_pred ccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Q 021937 183 KIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNG----DMRKALNILQSTH 247 (305)
Q Consensus 183 ~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g----~~r~~~~~l~~~~ 247 (305)
-+++++.+.. ..+.++.|++.++.++++........ -++-.++.++..+.| |+..++...+..+
T Consensus 815 liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~a 885 (952)
T KOG0735|consen 815 LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYNAQLAA 885 (952)
T ss_pred ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHHHHHHH
Confidence 8899998754 56899999999999999888764432 234457788887765 4554444444433
No 185
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.50 E-value=1.5e-12 Score=122.74 Aligned_cols=210 Identities=14% Similarity=0.142 Sum_probs=138.5
Q ss_pred CCccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
..|+.++|.+..++.+.+.+.. ....+++|+|++||||+++|+++.+.... ....++.++|..... +.+...+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~~-~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYPD-EALAEEFLG 398 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCCh-HHHHHHhcC
Confidence 3688999998888777666654 22234999999999999999999886422 235788889887432 222221111
Q ss_pred hhhccc----ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccc
Q 021937 128 FASTQS----FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKII 185 (305)
Q Consensus 128 ~~~~~~----~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l~ 185 (305)
...... ...-..+.+++|||||++.++...|..|++++++.. .++++|++++.. ..+.
T Consensus 399 ~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~ 478 (638)
T PRK11388 399 SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFS 478 (638)
T ss_pred CCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCCh
Confidence 100000 000113457899999999999999999999998542 145667666532 2344
Q ss_pred hhhhcce--eEEEecCCCHH--HHHHHHHHHHH----Hc--CCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc--Cc
Q 021937 186 PALQSRC--TRFRFAPLEPV--HVTERLKHVIE----AE--GLDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQ 252 (305)
Q Consensus 186 ~~l~~r~--~~i~~~~~~~~--~~~~~l~~~~~----~~--~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~--~~ 252 (305)
+.+..|+ ..+.+||+... ++..++...+. +. .+.+++++++.|.++. +||+|.+.+.++.++... ..
T Consensus 479 ~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~~ 558 (638)
T PRK11388 479 RQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGR 558 (638)
T ss_pred HHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCe
Confidence 5555565 44667777653 44444444433 22 2468999999999887 999999999999877643 34
Q ss_pred cCHHHHHhhh
Q 021937 253 ITEEAVYLCT 262 (305)
Q Consensus 253 i~~~~v~~~~ 262 (305)
|+.+++...+
T Consensus 559 i~~~~lp~~~ 568 (638)
T PRK11388 559 IRLSDLPEHL 568 (638)
T ss_pred ecHHHCchhh
Confidence 7777765433
No 186
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.49 E-value=1.4e-12 Score=118.36 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=136.1
Q ss_pred CCccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHh------CCCCcccEEEeecCCCcChhHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLY------GAQYHNMILELNASDDRGIDVV 121 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 121 (305)
..|++++|.+..++.+.+.+.. ....+++|+|++||||+.+|+.+.+.+. .......|+.++|..... ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 3578899999999888888764 2334599999999999999999998721 122355799999987432 222
Q ss_pred HHHHHHhhhcccccCC---------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC
Q 021937 122 RQQIQDFASTQSFSFG---------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV 181 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~---------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~ 181 (305)
...+..... ..|.+. ..+.++.|||||++.++...|..|++++++.. .++++|++++..
T Consensus 295 eseLFG~~~-gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 295 EAELFGYEE-GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred HHHhcCCcc-ccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC
Confidence 222211110 011111 13557899999999999999999999998632 244677776533
Q ss_pred c-------ccchhhhcce--eEEEecCCCH--HHHHHHHHHHHH----HcCCCCCHHHHH-------HHHHH-cCCCHHH
Q 021937 182 N-------KIIPALQSRC--TRFRFAPLEP--VHVTERLKHVIE----AEGLDVTEGGLA-------ALVRL-CNGDMRK 238 (305)
Q Consensus 182 ~-------~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~~----~~~~~~~~~~~~-------~l~~~-~~g~~r~ 238 (305)
- .+.+++..|+ ..+.+||+.+ +++..++...+. ..+..++++++. .+..+ ++||+|.
T Consensus 374 L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvRE 453 (538)
T PRK15424 374 LEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRE 453 (538)
T ss_pred HHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHH
Confidence 1 2334555565 4567777664 455555554444 356677777663 33333 4899999
Q ss_pred HHHHHHHHhhcc-----CccCHHHHH
Q 021937 239 ALNILQSTHMAS-----QQITEEAVY 259 (305)
Q Consensus 239 ~~~~l~~~~~~~-----~~i~~~~v~ 259 (305)
+.+.++.++... ..++.+++.
T Consensus 454 L~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 454 LRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 999999877632 246666554
No 187
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=1.1e-12 Score=115.70 Aligned_cols=173 Identities=20% Similarity=0.270 Sum_probs=107.4
Q ss_pred ccccchHHHHHHHHHHh-------cC---------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC
Q 021937 54 DVAAHRDIVDTIDRLTS-------EN---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~-------~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (305)
.++||+..++.+...+. .. ...+++|+||||||||++|+.+++.+ ...++.+++.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l-----~~pf~~id~~~l~~ 146 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL-----DVPFAIADATTLTE 146 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-----CCCceecchhhccc
Confidence 48999999997755541 10 13469999999999999999999987 34555555543211
Q ss_pred h----hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHHHHhc----C-----
Q 021937 118 I----DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYT----K----- 170 (305)
Q Consensus 118 ~----~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~~----~----- 170 (305)
. ......+........+. .....++||+|||+|.+... .|+.|+++++... .
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~-~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYD-VEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CCcccchHHHHHHHHHHhcccc-HHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 1 11222222221111110 11234789999999999753 7899999998421 0
Q ss_pred ----CceEEEEecC------------------------------C--------c--------------ccchhhhcce-e
Q 021937 171 ----NTRFALICNQ------------------------------V--------N--------------KIIPALQSRC-T 193 (305)
Q Consensus 171 ----~~~iil~~~~------------------------------~--------~--------------~l~~~l~~r~-~ 193 (305)
+..+|.|+|- . . .+.|.|..|+ .
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~ 305 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV 305 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCe
Confidence 1111222110 0 0 1356677777 6
Q ss_pred EEEecCCCHHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc
Q 021937 194 RFRFAPLEPVHVTERLKH----VI-------EAEGL--DVTEGGLAALVRLC 232 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~----~~-------~~~~~--~~~~~~~~~l~~~~ 232 (305)
++.|.+++.+++.+++.. .. ...++ .++++++++|++.+
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 689999999999988862 22 22344 57999999999875
No 188
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8e-13 Score=118.29 Aligned_cols=217 Identities=19% Similarity=0.247 Sum_probs=152.0
Q ss_pred cccccchHHHHHHHHHHh-------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC-----
Q 021937 53 ADVAAHRDIVDTIDRLTS-------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD----- 114 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~----- 114 (305)
..+.|....+..++..+. -..+..+++|||||+|||.++++++++. ...++.++++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-----~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-----GAFLFLINGPELISKF 258 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-----CceeEecccHHHHHhc
Confidence 456666666665555543 1234459999999999999999999997 45566666653
Q ss_pred -CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH----------HHHHHHHHHHHHhc--CCceEEEEecCC
Q 021937 115 -DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK----------DAQFALRRVIEKYT--KNTRFALICNQV 181 (305)
Q Consensus 115 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~~--~~~~iil~~~~~ 181 (305)
......++..+........ +.+++|||++.+.+ .....|+.+++... .++.++.+++++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~--------psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp 330 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQV--------PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRP 330 (693)
T ss_pred ccchHHHHHHHHHHHhccCC--------CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCc
Confidence 2334455666665544332 69999999999864 24567888998776 456666677999
Q ss_pred cccchhhhc-ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH-HHHHHhhccCccCHHHH
Q 021937 182 NKIIPALQS-RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN-ILQSTHMASQQITEEAV 258 (305)
Q Consensus 182 ~~l~~~l~~-r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~-~l~~~~~~~~~i~~~~v 258 (305)
..+++.+++ |+ ..+.+.-|+..+..++++...+..+.. ++..+..++..+.|-...-+. ++..++..+..-+.+++
T Consensus 331 ~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~ 409 (693)
T KOG0730|consen 331 DSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIF 409 (693)
T ss_pred cccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999996 77 678999999999999999999888865 667788999999887654443 33444433322266677
Q ss_pred HhhhCCCChhhHHHHHHHHHcccHH
Q 021937 259 YLCTGNPLPKDIEQISYWLLNESFA 283 (305)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~ 283 (305)
..+........+...+-.+..-+++
T Consensus 410 ~~A~~~i~psa~Re~~ve~p~v~W~ 434 (693)
T KOG0730|consen 410 QEALMGIRPSALREILVEMPNVSWD 434 (693)
T ss_pred HHHHhcCCchhhhheeccCCCCChh
Confidence 7777666666666555444444433
No 189
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.1e-13 Score=115.32 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=127.6
Q ss_pred cCCCCccccccchHHHHHHHHHHh------------cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTS------------ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
.++..|+++.|.....+.+..... ......+++.||||+|||.+++++|.+. ...++.+.++.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSass 221 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISASS 221 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-----cceEeeccHHH
Confidence 345677888887777776666543 1223349999999999999999999997 55677766654
Q ss_pred Cc--Chh---HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH------------HHHHHHHHHHH---hcCCceE
Q 021937 115 DR--GID---VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD------------AQFALRRVIEK---YTKNTRF 174 (305)
Q Consensus 115 ~~--~~~---~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~------------~~~~l~~~l~~---~~~~~~i 174 (305)
.. ... .+...+...+...+ +.|+||||+|.+... ..++|.+..-. ...++.+
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~q--------PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQ--------PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcC--------CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 32 111 22223333333322 799999999998422 12344444332 1234556
Q ss_pred EEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHhh
Q 021937 175 ALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGD-MRKALNILQSTHM 248 (305)
Q Consensus 175 il~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~~~~~ 248 (305)
+.+||.+..++.++++|+ .++.++.|+.+....++.+.+...+..+.+..++.|++.+.|- -..+.++|..++.
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~ 369 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAM 369 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhc
Confidence 667799999999999998 5677999999999999999998887778888899999988652 2233344444443
No 190
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-12 Score=118.21 Aligned_cols=198 Identities=22% Similarity=0.265 Sum_probs=134.5
Q ss_pred CCccccccchHHHHHHHHHHh-----------cCCCC-eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC--
Q 021937 50 QSLADVAAHRDIVDTIDRLTS-----------ENRLP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~-----------~~~~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 115 (305)
..|.++.|.++.++.+.+.+. +++.| +++++||||+|||.+|++++.+. ..+++.+++++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-----~VPFf~iSGS~FVe 221 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFVE 221 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----CCCceeccchhhhh
Confidence 478999999999988877764 12333 49999999999999999999987 666777766652
Q ss_pred ----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------------HHHHHHHHHHHhcC--CceEE
Q 021937 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------------AQFALRRVIEKYTK--NTRFA 175 (305)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~~~--~~~ii 175 (305)
.+...+++.+.++.... +++|+|||+|..... ..+.|+--++.... .+.++
T Consensus 222 mfVGvGAsRVRdLF~qAkk~a---------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivi 292 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNA---------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVI 292 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccC---------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEE
Confidence 35667778877775554 599999999988532 34455555554443 33444
Q ss_pred EEecCCcccchhhhc--ce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH-HHHHHHHHhh---
Q 021937 176 LICNQVNKIIPALQS--RC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRK-ALNILQSTHM--- 248 (305)
Q Consensus 176 l~~~~~~~l~~~l~~--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~-~~~~l~~~~~--- 248 (305)
..||+++-+++++.+ |+ +.+.++.|+...+.++++-++......- +-.+..|++.++|-... +.|.+..++.
T Consensus 293 aaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aa 371 (596)
T COG0465 293 AATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-DVDLKKIARGTPGFSGADLANLLNEAALLAA 371 (596)
T ss_pred ecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-cCCHHHHhhhCCCcccchHhhhHHHHHHHHH
Confidence 557888888899876 44 7789999999999999997766544431 12244488888764332 2233332222
Q ss_pred --ccCccCHHHHHhhh
Q 021937 249 --ASQQITEEAVYLCT 262 (305)
Q Consensus 249 --~~~~i~~~~v~~~~ 262 (305)
....|+..++.++.
T Consensus 372 r~n~~~i~~~~i~ea~ 387 (596)
T COG0465 372 RRNKKEITMRDIEEAI 387 (596)
T ss_pred HhcCeeEeccchHHHH
Confidence 22346666655443
No 191
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.46 E-value=7.8e-12 Score=114.44 Aligned_cols=196 Identities=16% Similarity=0.158 Sum_probs=132.8
Q ss_pred CccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021937 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
.+.+++|++..++.+.+.+... ...+++|+|++||||+++|+++...... ....++.++|..... ..+...+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHhcCc
Confidence 5678999999988888877653 2334999999999999999999987532 244788888886432 2222221111
Q ss_pred hhccccc--------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------c
Q 021937 129 ASTQSFS--------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------N 182 (305)
Q Consensus 129 ~~~~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~ 182 (305)
.. ..|. .-..+.+++|||||++.++...|..|++++++.. .++++|++++.. .
T Consensus 262 ~~-g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 262 VK-GAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred cc-cccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 00 0011 1123557899999999999999999999998532 255788777543 2
Q ss_pred ccchhhhcce--eEEEecCCCH--HHHHHHHH----HHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc
Q 021937 183 KIIPALQSRC--TRFRFAPLEP--VHVTERLK----HVIEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 183 ~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~----~~~~~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 250 (305)
.+.+.+..|+ ..+.+||+.. +++..++. +.+.+.+ ..+++++++.+..+. +||+|.+.+.++.++..+
T Consensus 341 ~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 341 RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 3556666665 4467777764 34444333 3333333 468999999988865 899999999999887643
No 192
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.45 E-value=2.8e-11 Score=104.98 Aligned_cols=230 Identities=16% Similarity=0.213 Sum_probs=164.4
Q ss_pred HHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceE
Q 021937 65 IDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVK 143 (305)
Q Consensus 65 l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 143 (305)
+...+... ..+.+++||+.--=....+..+.....+.+....+....... ......+........|.. +.
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~lF~~-----~~ 76 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSE----LDWADLLSELESPSLFGE-----KR 76 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhccccc----CCHHHHHHHhhccccccC-----Ce
Confidence 34444443 456689999996666666666666654222222222222111 112222323222222333 48
Q ss_pred EEEEeCCCcCC-HHHHHHHHHHHHHhc-CCceEEEEecCCcc---cchhhhcc--eeEEEecCCCHHHHHHHHHHHHHHc
Q 021937 144 LVLLDEADAMT-KDAQFALRRVIEKYT-KNTRFALICNQVNK---IIPALQSR--CTRFRFAPLEPVHVTERLKHVIEAE 216 (305)
Q Consensus 144 vliiDe~~~l~-~~~~~~l~~~l~~~~-~~~~iil~~~~~~~---l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~ 216 (305)
+++|....... .+....+.......| ....+++.++..+. ..+.+..- ...+.+.+++..++.+|+...+.+.
T Consensus 77 ~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 156 (334)
T COG1466 77 LVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKEL 156 (334)
T ss_pred eEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHHc
Confidence 89999888876 455556666666666 44455544544332 22222222 4578999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhccC--ccCHHHHHhhhCCCChhhHHHHHHHHHcccHHHHHHHHHHHHH
Q 021937 217 GLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ--QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRIQNLSF 294 (305)
Q Consensus 217 ~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~--~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 294 (305)
|+.++.++++.++...+||.+.+.+.+++++.... .|+.++|+.++......+.+++++++..++..+|+..++.+..
T Consensus 157 ~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l~~L~~ 236 (334)
T COG1466 157 GLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDLLL 236 (334)
T ss_pred CCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988553 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 021937 295 IIRLVLFVL 303 (305)
Q Consensus 295 ~~~~~~~~~ 303 (305)
++..|+.++
T Consensus 237 ~ge~p~~il 245 (334)
T COG1466 237 EGEEPLKLL 245 (334)
T ss_pred cCCcHHHHH
Confidence 888777654
No 193
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.44 E-value=9.3e-12 Score=109.76 Aligned_cols=207 Identities=18% Similarity=0.211 Sum_probs=139.6
Q ss_pred CCCccccccchHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (305)
+-+|++++|.+..+..+.+.++... ...++|.|++||||..+|+.+.+.-. .....|+.+||+.. ...-+.+.+.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~--R~~~PFIaiNCaAi-Pe~LlESELF 317 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSP--RANGPFIAINCAAI-PETLLESELF 317 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCc--ccCCCeEEEecccC-CHHHHHHHHh
Confidence 3478999999888888877776532 33499999999999999999988743 33557999999863 2222333222
Q ss_pred HhhhcccccCCCC---------CceEEEEEeCCCcCCHHHHHHHHHHHHHh-----------cCCceEEEEecCCc----
Q 021937 127 DFASTQSFSFGVK---------ASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQVN---- 182 (305)
Q Consensus 127 ~~~~~~~~~~~~~---------~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~iil~~~~~~---- 182 (305)
.+ ....|++..+ ++++.||+||+..++...|..|++.+++. +.++++|.+||..-
T Consensus 318 Gy-e~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i 396 (560)
T COG3829 318 GY-EKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI 396 (560)
T ss_pred Cc-CCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH
Confidence 21 1122443322 56789999999999999999999999863 24567888886532
Q ss_pred ---ccchhhhcceeE--EEecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHh
Q 021937 183 ---KIIPALQSRCTR--FRFAPLEP--VHVTER----LKHVIEAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTH 247 (305)
Q Consensus 183 ---~l~~~l~~r~~~--i~~~~~~~--~~~~~~----l~~~~~~~~~---~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~ 247 (305)
.+-.+|.-|..+ +++||+-+ +++..+ +.+...+.+. .++++++..+.++ ++||+|.+-|.++.+.
T Consensus 397 ~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 397 AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAV 476 (560)
T ss_pred hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 344556666644 55666543 333333 3333333333 3789999988886 4999999999998887
Q ss_pred hc---cCccCHHHHH
Q 021937 248 MA---SQQITEEAVY 259 (305)
Q Consensus 248 ~~---~~~i~~~~v~ 259 (305)
.. ...|+.+++-
T Consensus 477 ~~~~~~~~I~~~~lp 491 (560)
T COG3829 477 NLVESDGLIDADDLP 491 (560)
T ss_pred hccCCcceeehhhcc
Confidence 52 2235555543
No 194
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.44 E-value=2e-11 Score=103.19 Aligned_cols=178 Identities=19% Similarity=0.148 Sum_probs=110.9
Q ss_pred cCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH--
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-- 124 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (305)
+.|..-..++-.+.....+...+..+ .+++|.|+||||||++++.+++.+ ...++.+++.......++...
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l-----~~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL-----NWPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH-----CCCeEEEEecCCCChhhcCCCce
Confidence 44554456777777777777777554 359999999999999999999998 344555555443222211110
Q ss_pred --HHHhhhcccccCC----CCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------------c-CCceEEEEecCCc--
Q 021937 125 --IQDFASTQSFSFG----VKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------T-KNTRFALICNQVN-- 182 (305)
Q Consensus 125 --i~~~~~~~~~~~~----~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~-~~~~iil~~~~~~-- 182 (305)
+..-.....+..+ ....+.++++||++...++.+..|..+++.. + +..+++.+.|...
T Consensus 112 ~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G 191 (327)
T TIGR01650 112 IVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG 191 (327)
T ss_pred eeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC
Confidence 0000000011111 0133578999999999999999999998831 1 2344566666532
Q ss_pred ----------ccchhhhccee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 021937 183 ----------KIIPALQSRCT-RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL 231 (305)
Q Consensus 183 ----------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 231 (305)
.++.+..+|+. ++.+..|+.++-.+++...........+++.++.+++.
T Consensus 192 d~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 192 DTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred CCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 45789999995 46899999998888887654221111134455555543
No 195
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.9e-12 Score=116.68 Aligned_cols=189 Identities=19% Similarity=0.297 Sum_probs=123.0
Q ss_pred ccccchHHHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 54 DVAAHRDIVDTIDRLTSE------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
+--|.+.+++++.+++.- -.++.++|+||||+|||++++.+|+.+. -.|+.++...-....+++..-.+
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn-----RkFfRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN-----RKFFRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC-----CceEEEeccccccHHhhccccee
Confidence 455677888888887753 2344589999999999999999999993 34555554433333333222111
Q ss_pred hhhccc-----ccCCCCCceEEEEEeCCCcCCH----HHHHHHHHHHHHh------------c---CCceEEEEecCCcc
Q 021937 128 FASTQS-----FSFGVKASVKLVLLDEADAMTK----DAQFALRRVIEKY------------T---KNTRFALICNQVNK 183 (305)
Q Consensus 128 ~~~~~~-----~~~~~~~~~~vliiDe~~~l~~----~~~~~l~~~l~~~------------~---~~~~iil~~~~~~~ 183 (305)
+....+ ......-..-+++|||+|++.. +-..+|+.+++.- | .++.||+++|..+.
T Consensus 487 YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idt 566 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDT 566 (906)
T ss_pred eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccccc
Confidence 111000 0000011135999999999963 2346777777621 1 35678888899999
Q ss_pred cchhhhcceeEEEecCCCHHHHHHHHHHHHHH-----c-----CCCCCHHHHHHHHH-HcC-CCHHHHHHHHHHHh
Q 021937 184 IIPALQSRCTRFRFAPLEPVHVTERLKHVIEA-----E-----GLDVTEGGLAALVR-LCN-GDMRKALNILQSTH 247 (305)
Q Consensus 184 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-----~-----~~~~~~~~~~~l~~-~~~-g~~r~~~~~l~~~~ 247 (305)
+++.|+.|..++.+..+..+|-.++..+++-. . .++++++++..+.+ +|. .-+|.+...+++.+
T Consensus 567 IP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 567 IPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred CChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999988888776642 2 34678887766554 442 33666666655444
No 196
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.42 E-value=2.4e-11 Score=100.90 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHhCC----CCcccEEEeecCCCcChhHHHHHHHHhhhc
Q 021937 59 RDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNASDDRGIDVVRQQIQDFAST 131 (305)
Q Consensus 59 ~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (305)
.++++.|...+. ..++|+++|+|++|.|||++++.+.+..... .....++.+..+...+...+...+-.....
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344455555555 3567779999999999999999999865321 123356666666655555555555444332
Q ss_pred ccccCC-------------CCCceEEEEEeCCCcCC---HHHHHHHHHHHHHhcC--CceEEEEecC----Ccccchhhh
Q 021937 132 QSFSFG-------------VKASVKLVLLDEADAMT---KDAQFALRRVIEKYTK--NTRFALICNQ----VNKIIPALQ 189 (305)
Q Consensus 132 ~~~~~~-------------~~~~~~vliiDe~~~l~---~~~~~~l~~~l~~~~~--~~~iil~~~~----~~~l~~~l~ 189 (305)
+.-... ...+..+|+|||+|.+. ...+..+++.+..... +..+|++++. .-.-++++.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 211100 12457899999999974 3446667777765543 3445555432 123478999
Q ss_pred cceeEEEecCCCHH-HHHHHHHHHHHHcCC----CC-CHHHHHHHHHHcCCCHHHHHHHHHHHhhc-----cCccCHHHH
Q 021937 190 SRCTRFRFAPLEPV-HVTERLKHVIEAEGL----DV-TEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAV 258 (305)
Q Consensus 190 ~r~~~i~~~~~~~~-~~~~~l~~~~~~~~~----~~-~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-----~~~i~~~~v 258 (305)
+||..+.++++..+ +...++...-..... .+ +.+....|...++|.+..+..++..++.. .+.||.+.+
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l 282 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEERITREIL 282 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 99999999998864 455555444332211 23 45677899999999999999999877763 356898888
Q ss_pred Hhhh
Q 021937 259 YLCT 262 (305)
Q Consensus 259 ~~~~ 262 (305)
...-
T Consensus 283 ~~~~ 286 (302)
T PF05621_consen 283 DKID 286 (302)
T ss_pred hhCC
Confidence 7654
No 197
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.42 E-value=3.3e-11 Score=95.50 Aligned_cols=190 Identities=19% Similarity=0.234 Sum_probs=132.3
Q ss_pred hcCCCCccccccchHHHHHHH----HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHH
Q 021937 46 KYRPQSLADVAAHRDIVDTID----RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (305)
Q Consensus 46 ~~~p~~~~~~~g~~~~~~~l~----~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (305)
.+.|-.+..++|-+...+.|. +.+.+.+..+++|||..|+|||++++++.+++...+.. .++++..+......+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr--LVEV~k~dl~~Lp~l 130 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR--LVEVDKEDLATLPDL 130 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe--EEEEcHHHHhhHHHH
Confidence 345567788999777666654 44556666779999999999999999999999766554 788877665555555
Q ss_pred HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-HHHHHHHHHHH----HhcCCceEEEEecCCcccch----------
Q 021937 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-DAQFALRRVIE----KYTKNTRFALICNQVNKIIP---------- 186 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-~~~~~l~~~l~----~~~~~~~iil~~~~~~~l~~---------- 186 (305)
...+..... +-|||+||+-.=.. .....|-..++ ..|.++.|..++|+..-++.
T Consensus 131 ~~~Lr~~~~-----------kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~ 199 (287)
T COG2607 131 VELLRARPE-----------KFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTG 199 (287)
T ss_pred HHHHhcCCc-----------eEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCccc
Confidence 444443322 68999999765543 34455555555 45667777777765432221
Q ss_pred ------------hhhcce-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHcCCCHHHHHHHHHHHhh
Q 021937 187 ------------ALQSRC-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA-----LVRLCNGDMRKALNILQSTHM 248 (305)
Q Consensus 187 ------------~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----l~~~~~g~~r~~~~~l~~~~~ 248 (305)
++..|| .++.|.|++.++..+++..+++..++.++++.+.. -....+.+-|.|.+-++.++.
T Consensus 200 eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 200 EIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred ccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 233455 67999999999999999999999999987655433 223345677888877776654
No 198
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.3e-12 Score=109.34 Aligned_cols=153 Identities=22% Similarity=0.302 Sum_probs=107.5
Q ss_pred CccccccchHHHHHHHHHHhc--------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC-----
Q 021937 51 SLADVAAHRDIVDTIDRLTSE--------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG----- 117 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----- 117 (305)
.|++++-++.....++++... ....++++|||||+|||.+++.++..- ...+-.+++.+...
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----GlDYA~mTGGDVAPlG~qa 427 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----GLDYAIMTGGDVAPLGAQA 427 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----CCceehhcCCCccccchHH
Confidence 488999999998888887642 234459999999999999999999875 34444455544322
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC---------HHHHHHHHHHH---HHhcCCceEEEEecCCcccc
Q 021937 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT---------KDAQFALRRVI---EKYTKNTRFALICNQVNKII 185 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~l~~~l---~~~~~~~~iil~~~~~~~l~ 185 (305)
...+.+.+ ++.. ...++.++||||+|.+. ..+...|-.++ .+.+.+.++++++|.+..++
T Consensus 428 VTkiH~lF-DWak-------kS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 428 VTKIHKLF-DWAK-------KSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred HHHHHHHH-HHHh-------hcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchh
Confidence 22222222 2222 12235789999998763 22333333322 34455677888899999999
Q ss_pred hhhhcce-eEEEecCCCHHHHHHHHHHHHHHc
Q 021937 186 PALQSRC-TRFRFAPLEPVHVTERLKHVIEAE 216 (305)
Q Consensus 186 ~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~ 216 (305)
.++-.|+ .+++|+-|-.++..+++..++.++
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 9999998 789999999999999998888764
No 199
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.40 E-value=2.6e-11 Score=113.40 Aligned_cols=213 Identities=14% Similarity=0.162 Sum_probs=129.4
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh-----------CCC-----------------
Q 021937 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-----------GAQ----------------- 102 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-----------~~~----------------- 102 (305)
.|..++||+..+..|...+......+++|+|++|+|||++++.+++.+. |..
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 3678999999999888888776666799999999999999999998872 100
Q ss_pred --CcccEEEeecCCCc----ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-------
Q 021937 103 --YHNMILELNASDDR----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT------- 169 (305)
Q Consensus 103 --~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~------- 169 (305)
....|+.+...... +..++...+...........-..+..++++|||++.++...++.|+..+++..
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g 161 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREG 161 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECC
Confidence 01233333222110 11111111111000000111123456899999999999999999999998642
Q ss_pred ------CCceEEEEecCC-cccchhhhcce-eEEEecCCC-HHHHHHHHHHHHH--------------------------
Q 021937 170 ------KNTRFALICNQV-NKIIPALQSRC-TRFRFAPLE-PVHVTERLKHVIE-------------------------- 214 (305)
Q Consensus 170 ------~~~~iil~~~~~-~~l~~~l~~r~-~~i~~~~~~-~~~~~~~l~~~~~-------------------------- 214 (305)
.+..+|.++|.. ..+.+.+..|+ ..+.+.++. .++..+++.....
T Consensus 162 ~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~a 241 (633)
T TIGR02442 162 LSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARA 241 (633)
T ss_pred ceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHH
Confidence 234445444533 35778899998 446666554 3443344332110
Q ss_pred ---HcCCCCCHHHHHHHHHHcC--C--CHHHHHHHHHHHh---h--ccCccCHHHHHhhhC
Q 021937 215 ---AEGLDVTEGGLAALVRLCN--G--DMRKALNILQSTH---M--ASQQITEEAVYLCTG 263 (305)
Q Consensus 215 ---~~~~~~~~~~~~~l~~~~~--g--~~r~~~~~l~~~~---~--~~~~i~~~~v~~~~~ 263 (305)
...+.++++.++.++..+. | .+|..+.+++.+. . ....++.++|++++.
T Consensus 242 r~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 242 RSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 0135678888888777652 1 3666666664332 2 335699999977653
No 200
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.39 E-value=1.8e-11 Score=116.15 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=129.2
Q ss_pred CCccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
..|.+++|++..++.+.+.+... ...+++|+|++|||||++|+++....... ...++.++|.... ...+...+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~-~~~~~~~lfg 449 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP-AGLLESDLFG 449 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC-hhHhhhhhcC
Confidence 35778999998888877666632 22359999999999999999998865322 4478888887632 1222221111
Q ss_pred hhhcccccC--------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------
Q 021937 128 FASTQSFSF--------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV------- 181 (305)
Q Consensus 128 ~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~------- 181 (305)
... ..+.+ -..+.+++|+|||++.++.+.+..|++++++.. .++++|++++..
T Consensus 450 ~~~-~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~ 528 (686)
T PRK15429 450 HER-GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 528 (686)
T ss_pred ccc-ccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHc
Confidence 000 00000 012346899999999999999999999998642 345777777542
Q ss_pred cccchhhhcce--eEEEecCCCH--HHHHHHHHH----HHHHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhc
Q 021937 182 NKIIPALQSRC--TRFRFAPLEP--VHVTERLKH----VIEAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMA 249 (305)
Q Consensus 182 ~~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~----~~~~~~~---~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~ 249 (305)
..+...+..|+ ..+.+||+.. +++..++.. .+.+.+. .+++++++.+..+. +||+|.+.+.++.++..
T Consensus 529 ~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 529 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred CcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 12344555564 4467777654 344434433 3333343 47899999988764 89999999999988864
Q ss_pred c
Q 021937 250 S 250 (305)
Q Consensus 250 ~ 250 (305)
.
T Consensus 609 ~ 609 (686)
T PRK15429 609 T 609 (686)
T ss_pred C
Confidence 3
No 201
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=2.6e-11 Score=106.46 Aligned_cols=189 Identities=19% Similarity=0.232 Sum_probs=113.9
Q ss_pred cccccchHHHHHHHHHHh-------c---CC--------CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 53 ADVAAHRDIVDTIDRLTS-------E---NR--------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~-------~---~~--------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
+-++||++.++.+...+. . .. ..+++|+||||+|||++|+.+++.+ ...+..+++..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l-----~~pf~~~da~~ 151 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL-----NVPFAIADATT 151 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc-----CCCeEEechhh
Confidence 347899999998765541 1 11 2469999999999999999999887 33444444332
Q ss_pred CcC----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH--------------HHHHHHHHHHHHhc-------
Q 021937 115 DRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK--------------DAQFALRRVIEKYT------- 169 (305)
Q Consensus 115 ~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~~------- 169 (305)
... -......+........+. -....+++|+|||+|.+.+ ..++.|+++++...
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~~-l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~ 230 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADYD-VEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQG 230 (413)
T ss_pred ccccccccccHHHHHHHHHHhCccc-HHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCC
Confidence 111 011222222222211110 0123357999999999986 57899999996321
Q ss_pred ------CCceEEEEecCC---------------------------c-----------------------ccchhhhcce-
Q 021937 170 ------KNTRFALICNQV---------------------------N-----------------------KIIPALQSRC- 192 (305)
Q Consensus 170 ------~~~~iil~~~~~---------------------------~-----------------------~l~~~l~~r~- 192 (305)
.+..+|.|+|-. . .+.|.|..|+
T Consensus 231 gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld 310 (413)
T TIGR00382 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLP 310 (413)
T ss_pred CccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCC
Confidence 112334343220 0 1346677777
Q ss_pred eEEEecCCCHHHHHHHHHHH----HHH-------cCC--CCCHHHHHHHHHHcC---CCHHHHHHHHHHHh
Q 021937 193 TRFRFAPLEPVHVTERLKHV----IEA-------EGL--DVTEGGLAALVRLCN---GDMRKALNILQSTH 247 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~~----~~~-------~~~--~~~~~~~~~l~~~~~---g~~r~~~~~l~~~~ 247 (305)
.++.|.|++.+++.+++... .++ .++ .++++++++|++.+. --.|.+...++...
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 56889999999998887652 221 133 578999999998752 22555555554443
No 202
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.8e-11 Score=100.38 Aligned_cols=170 Identities=21% Similarity=0.274 Sum_probs=113.1
Q ss_pred CccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC--
Q 021937 51 SLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-- 115 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 115 (305)
+|+++-|--..+..+++.+.- ..+..++||||||+|||.++++++..+ ...++.+..+..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-----g~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-----GVNFLKVVSSALVD 204 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc-----CCceEEeeHhhhhh
Confidence 788888888888888777541 123348999999999999999999987 566666655432
Q ss_pred c----ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC-----------HHHHHHHHHHHHHh-----cCCceEE
Q 021937 116 R----GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT-----------KDAQFALRRVIEKY-----TKNTRFA 175 (305)
Q Consensus 116 ~----~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~ii 175 (305)
. ....+++.+..+.... +++|++||+|... .+.+..|.++++.. ...+++|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~---------pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~I 275 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVI---------PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTI 275 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhC---------ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEE
Confidence 1 2223344444333322 5999999999874 23466777777742 3578999
Q ss_pred EEecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC
Q 021937 176 LICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHVIEAEG--LDVTEGGLAALVRLCNG 234 (305)
Q Consensus 176 l~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g 234 (305)
+++|+++.++++|.+-. ..+..+.|.......+++-..+... ..++.+++-.+....+|
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 99999999999998743 4567776766666665544433221 14565555555554444
No 203
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.36 E-value=1e-10 Score=95.67 Aligned_cols=120 Identities=13% Similarity=0.213 Sum_probs=94.7
Q ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec------------CCcccchhhhcceeEEEecCCCHHHHHHHH
Q 021937 142 VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN------------QVNKIIPALQSRCTRFRFAPLEPVHVTERL 209 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 209 (305)
++|+||||+|.++-+...+|-+.+++-- .+.+++++| ++..++-++..|..++...|++.+++.+++
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 6799999999999999999999998654 234444443 334678899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhc-----cCccCHHHHHhhh
Q 021937 210 KHVIEAEGLDVTEGGLAALVRLC-NGDMRKALNILQSTHMA-----SQQITEEAVYLCT 262 (305)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~ 262 (305)
..+|..+.+.+++++++.+.... .-.+|.+++++..+... +..+..++|+.+.
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y 426 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVY 426 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHH
Confidence 99999999999999999988765 46799999998655442 2335555555443
No 204
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.36 E-value=7.7e-11 Score=106.76 Aligned_cols=205 Identities=19% Similarity=0.188 Sum_probs=134.3
Q ss_pred CccccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021937 51 SLADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
.+..++|....++.+...+.. ....+++++|++|+||+++|+.+...... ....++.++|.... ...+...+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~v~v~c~~~~-~~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR--KDKRFVAINCAAIP-ENLLESELFGY 213 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc--CCCCeEEEECCCCC-hHHHHHHhcCC
Confidence 455688888777777777653 22344899999999999999999876422 24468888887642 22222222111
Q ss_pred hhcccccC--------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------c
Q 021937 129 ASTQSFSF--------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------N 182 (305)
Q Consensus 129 ~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~ 182 (305)
.. ..+.+ -..+.+++|+|||++.++...|..|++++++.. .++++|++++.. .
T Consensus 214 ~~-~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 292 (445)
T TIGR02915 214 EK-GAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292 (445)
T ss_pred CC-CCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcC
Confidence 00 00111 123557899999999999999999999998642 245777777543 2
Q ss_pred ccchhhhcce--eEEEecCCCH--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc
Q 021937 183 KIIPALQSRC--TRFRFAPLEP--VHVTER----LKHVIEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 183 ~l~~~l~~r~--~~i~~~~~~~--~~~~~~----l~~~~~~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 250 (305)
.+.+.+..|+ ..+.+||+.. +++..+ +.+...+.+ ..+++++++.+.++. +||+|.+.+.++.++..+
T Consensus 293 ~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3455566665 4466766654 233333 333333333 358999999998876 899999999999888644
Q ss_pred --CccCHHHHH
Q 021937 251 --QQITEEAVY 259 (305)
Q Consensus 251 --~~i~~~~v~ 259 (305)
..|+.+++.
T Consensus 373 ~~~~i~~~~l~ 383 (445)
T TIGR02915 373 EGNQITAEDLG 383 (445)
T ss_pred CCCcccHHHcC
Confidence 347777653
No 205
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.35 E-value=1.2e-10 Score=97.52 Aligned_cols=207 Identities=18% Similarity=0.182 Sum_probs=134.7
Q ss_pred CCccccccchHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 50 QSLADVAAHRDIVDTIDRLTSENRL--PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
..|+.+++.+..++.+......-.+ ..++|.|.+||||..+|++.... .+.....|+.+||+.......-.+.+..
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~--S~R~~~pFlalNCA~lPe~~aEsElFG~ 278 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLA--SPRHSKPFLALNCASLPEDAAESELFGH 278 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhc--CcccCCCeeEeecCCCchhHhHHHHhcC
Confidence 4688999999888888777765322 23999999999999999988665 3344667999999874322222222222
Q ss_pred hhhccc-ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccchhh
Q 021937 128 FASTQS-FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIPAL 188 (305)
Q Consensus 128 ~~~~~~-~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l~~~l 188 (305)
...... ...-..+.++.+++||+..+++..|..|++++++.. .++++|++|... ..+-.++
T Consensus 279 apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDL 358 (511)
T COG3283 279 APGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDL 358 (511)
T ss_pred CCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHH
Confidence 211000 000123557899999999999999999999998643 356777776322 2344556
Q ss_pred hcceeE--EEecCCCHH--H----HHHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHhhcc--CccC
Q 021937 189 QSRCTR--FRFAPLEPV--H----VTERLKHVIEAEGL---DVTEGGLAALVRL-CNGDMRKALNILQSTHMAS--QQIT 254 (305)
Q Consensus 189 ~~r~~~--i~~~~~~~~--~----~~~~l~~~~~~~~~---~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~--~~i~ 254 (305)
.-|..+ ++++|+.+. + ..-++++.+.+.++ +++.+.+..+.++ +.||+|++.|.+..++..- ...+
T Consensus 359 fyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~~l~ 438 (511)
T COG3283 359 FYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGYELR 438 (511)
T ss_pred HHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhccCccc
Confidence 666644 444444321 1 23345666666665 5788888888875 4899999999997766532 3355
Q ss_pred HHHH
Q 021937 255 EEAV 258 (305)
Q Consensus 255 ~~~v 258 (305)
.+++
T Consensus 439 i~~i 442 (511)
T COG3283 439 IEDI 442 (511)
T ss_pred hhhc
Confidence 5554
No 206
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.35 E-value=5.9e-11 Score=101.21 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHh-CCCCcccEEEeecCCCcChhH-HHHHHHHhhhccc
Q 021937 58 HRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGIDV-VRQQIQDFASTQS 133 (305)
Q Consensus 58 ~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~ 133 (305)
++..+++|.+.+.. .....+.|+|++|+|||++|..+++... ...+. .++.++......... ....+..+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-ccccccccccccccccccccccccccccc
Confidence 35677888888887 4444589999999999999999998733 22232 223333333222233 3333333222211
Q ss_pred -c-c------------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecC
Q 021937 134 -F-S------------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAP 199 (305)
Q Consensus 134 -~-~------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~ 199 (305)
. . .....++.+|||||++... ....+...+.....+..+|+||... .+..........+++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 1 0 0012448999999987654 4444555555455577888888664 23333333367899999
Q ss_pred CCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 021937 200 LEPVHVTERLKHVIEAEG---LDVTEGGLAALVRLCNGDMRKALNILQST 246 (305)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 246 (305)
++.++..+++...+.... ..-.++....|++.|+|.|-.+.-....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998875443 12234567899999999887776665444
No 207
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.9e-11 Score=114.47 Aligned_cols=190 Identities=17% Similarity=0.166 Sum_probs=136.8
Q ss_pred CCccccccchHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC-
Q 021937 50 QSLADVAAHRDIVDTIDRLTSE-------------NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD- 115 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~- 115 (305)
..|+++.|-..++.+|++..-. .++..++++||||+|||..|++++..+...+....++.-.+++.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 4688899999999988887541 23444999999999999999999999876655555555544432
Q ss_pred -cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH-----------HHHHHHHHHHHHhcCCc--eEEEEecCC
Q 021937 116 -RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK-----------DAQFALRRVIEKYTKNT--RFALICNQV 181 (305)
Q Consensus 116 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~~~~--~iil~~~~~ 181 (305)
.+.......+..+...+ .+..+.+|++||+|.+.+ .....|+.+++.....+ ++|.+||++
T Consensus 342 skwvgEaERqlrllFeeA-----~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEA-----QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred ccccCcHHHHHHHHHHHH-----hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 22223223333222221 233379999999998753 12345788888766554 444556899
Q ss_pred cccchhhhcc--e-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021937 182 NKIIPALQSR--C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ 244 (305)
Q Consensus 182 ~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 244 (305)
+.+++++++. | ..+.|+.|+.+...+++...-.+..-.++......+++.+.|-.++-+..|.
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 9999999775 4 6789999999999999988777777788999999999999887777766653
No 208
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=6.3e-11 Score=103.32 Aligned_cols=196 Identities=16% Similarity=0.194 Sum_probs=132.2
Q ss_pred CccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021937 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
.+.+++|++..+.++.+.+.-- ....++|.|++||||-..|++|.+.- +.....++.+||+.. ....+.+.+..+
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S--~R~~kPfV~~NCAAl-PesLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS--PRRDKPFVKLNCAAL-PESLLESELFGH 297 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC--cccCCCceeeecccc-chHHHHHHHhcc
Confidence 4568999999998888877642 23449999999999999999998764 333557899999863 222222222221
Q ss_pred hhcccccCC--------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------c
Q 021937 129 ASTQSFSFG--------VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------N 182 (305)
Q Consensus 129 ~~~~~~~~~--------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~ 182 (305)
-. ..|++. .-+.++.+|+||+..++-..|..|++.+++.. -++++|.+||.- .
T Consensus 298 eK-GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 298 EK-GAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred cc-cccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 11 112222 12557899999999999999999999998642 356788888653 2
Q ss_pred ccchhhhcceeE--EEecCCCH--HH---HHH-HHHHHHHHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc
Q 021937 183 KIIPALQSRCTR--FRFAPLEP--VH---VTE-RLKHVIEAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 183 ~l~~~l~~r~~~--i~~~~~~~--~~---~~~-~l~~~~~~~~~---~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 250 (305)
++-.++.-|..+ +.+||+-+ ++ +.. ++++...+.|. .++.++++.+.++. +||+|.+.++++.++..+
T Consensus 377 ~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 377 EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 345566667644 44555433 22 222 33333334443 68999999988864 899999999998887633
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.6e-11 Score=109.48 Aligned_cols=191 Identities=17% Similarity=0.220 Sum_probs=136.1
Q ss_pred cCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCc-----ccEEEeecCC-------
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH-----NMILELNASD------- 114 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~-----~~~~~~~~~~------- 114 (305)
-+-..++.++|+++.+.++.+.+.....++-+|.|+||+|||.++..+|.++-....+ ..++.++-..
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGaky 243 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKY 243 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccc
Confidence 3556789999999999999999999888888999999999999999999998654322 2233333321
Q ss_pred -CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH---------HHHHHHHHHHHhcCCceEEEEec-----
Q 021937 115 -DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD---------AQFALRRVIEKYTKNTRFALICN----- 179 (305)
Q Consensus 115 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------~~~~l~~~l~~~~~~~~iil~~~----- 179 (305)
....+.++..+..... .++.++||||+|.+-.. ..+.|-..+... ....|.+|+
T Consensus 244 RGeFEeRlk~vl~ev~~---------~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT~~EYR 312 (786)
T COG0542 244 RGEFEERLKAVLKEVEK---------SKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATTLDEYR 312 (786)
T ss_pred cCcHHHHHHHHHHHHhc---------CCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEeccHHHHH
Confidence 1122333333333322 12589999999998421 223333334333 345555553
Q ss_pred CCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcC------CCHHHHHHHHHHHhh
Q 021937 180 QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAE----GLDVTEGGLAALVRLCN------GDMRKALNILQSTHM 248 (305)
Q Consensus 180 ~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~~~------g~~r~~~~~l~~~~~ 248 (305)
..-.-+++|.+||+.+.+..|+.++...+++....++ ++.++++++...+.++. .-|..|+.+++.++.
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 2334578999999999999999999999988776654 77899999998888774 357899999987775
No 210
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.31 E-value=7.2e-11 Score=102.46 Aligned_cols=109 Identities=21% Similarity=0.355 Sum_probs=77.8
Q ss_pred CceEEEEEeCCCcCCH------------HHHHHHHHHHHHhc----------CCceEEEEe----cCCcccchhhhcce-
Q 021937 140 ASVKLVLLDEADAMTK------------DAQFALRRVIEKYT----------KNTRFALIC----NQVNKIIPALQSRC- 192 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~~----------~~~~iil~~----~~~~~l~~~l~~r~- 192 (305)
...++|||||+|++.. ..|+.|+++++... .+..||+++ ..+..+.|.|..|+
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 4678999999999963 25788999998532 223344433 34567889999998
Q ss_pred eEEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHhh
Q 021937 193 TRFRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLC--------NGDMRKALNILQSTHM 248 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~ 248 (305)
.++.+.+++.+++..+|.. .+..+|+ .++++++.+|++.+ +--.|.+...++.+..
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 6789999999999888721 2233454 57899999999865 3347788877776654
No 211
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=3.4e-12 Score=96.68 Aligned_cols=112 Identities=25% Similarity=0.323 Sum_probs=72.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccC----CCCCceEEEEEeCCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSF----GVKASVKLVLLDEAD 151 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~vliiDe~~ 151 (305)
+++|+||||+|||++++.+++.+ ...+..+++.......++............+.. ..-.++.+++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 48999999999999999999998 445666666654444443221111001111110 111357899999999
Q ss_pred cCCHHHHHHHHHHHHHhc-------------C------CceEEEEecCCc----ccchhhhcce
Q 021937 152 AMTKDAQFALRRVIEKYT-------------K------NTRFALICNQVN----KIIPALQSRC 192 (305)
Q Consensus 152 ~l~~~~~~~l~~~l~~~~-------------~------~~~iil~~~~~~----~l~~~l~~r~ 192 (305)
...++.+..|..++++.. . +..+|.++|... .+.+++++||
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999999999998421 1 256777777666 6788888885
No 212
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.30 E-value=1.1e-10 Score=106.39 Aligned_cols=205 Identities=21% Similarity=0.242 Sum_probs=134.7
Q ss_pred CccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh
Q 021937 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF 128 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (305)
.+.+++|....+..+...+... ....++++|++|+|||++|+.+...... ....++.++|... ....+...+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~i~i~c~~~-~~~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR--AKAPFIALNMAAI-PKDLIESELFGH 212 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC--CCCCeEeeeCCCC-CHHHHHHHhcCC
Confidence 3567888877777766665432 2234999999999999999999886422 3457888888764 222222222111
Q ss_pred hhccccc--------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------c
Q 021937 129 ASTQSFS--------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------N 182 (305)
Q Consensus 129 ~~~~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~ 182 (305)
... .+. .-....++.++|||++.++...+..|++++++.. .++++|++++.. .
T Consensus 213 ~~g-~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 213 EKG-AFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCC-CCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 000 010 0123446789999999999999999999998642 234777777532 2
Q ss_pred ccchhhhcce--eEEEecCCCH--HHHHHHHHHHH----HHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc
Q 021937 183 KIIPALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEGL---DVTEGGLAALVRLC-NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 183 ~l~~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 250 (305)
.+.+.+..|+ ..+.++|+.. +++..++...+ .+.+. .++++++..+.++. +||+|.+.+.++.++...
T Consensus 292 ~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3556777776 4567777654 34444444443 33332 47899999988765 899999999998887643
Q ss_pred --CccCHHHHH
Q 021937 251 --QQITEEAVY 259 (305)
Q Consensus 251 --~~i~~~~v~ 259 (305)
..|+.+++.
T Consensus 372 ~~~~i~~~~l~ 382 (469)
T PRK10923 372 AGQEVLIQDLP 382 (469)
T ss_pred CCCcccHHHCc
Confidence 357777764
No 213
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=4.8e-11 Score=92.75 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=107.0
Q ss_pred EEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccch
Q 021937 107 ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIP 186 (305)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~ 186 (305)
.+.+-..+....+.+++.+........ ...++|+++|.+.....++|++.++++|.++.|+++++....+.+
T Consensus 28 ~~~~f~~~~i~Vd~iReii~~~~~~~~--------~~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llp 99 (206)
T PRK08485 28 NLRFFIKEEFKIEDAKEVIAEAYIAES--------EEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLP 99 (206)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhCCC--------CcEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCch
Confidence 333333445677888887777544321 123468899999999999999999999999999999999999999
Q ss_pred hhhcceeE-------------EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 021937 187 ALQSRCTR-------------FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST 246 (305)
Q Consensus 187 ~l~~r~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 246 (305)
++++||+. +.+.+++..++.+++.. ..+++.....++.+.|++...|.+|.++...++.
T Consensus 100 TI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~ 171 (206)
T PRK08485 100 TIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE 171 (206)
T ss_pred HHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence 99999975 77999999999999998 6777877788889999999999999887776444
No 214
>PHA02244 ATPase-like protein
Probab=99.29 E-value=1.2e-10 Score=99.55 Aligned_cols=131 Identities=23% Similarity=0.210 Sum_probs=83.9
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH--hhhcccccCCCCCc
Q 021937 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD--FASTQSFSFGVKAS 141 (305)
Q Consensus 64 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 141 (305)
.+..++..+. +++|+||+|||||++|++++..+ ...++.++.... ...+...+.. .....++.. ....
T Consensus 111 ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l-----g~pfv~In~l~d--~~~L~G~i~~~g~~~dgpLl~-A~~~ 180 (383)
T PHA02244 111 DIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL-----DLDFYFMNAIMD--EFELKGFIDANGKFHETPFYE-AFKK 180 (383)
T ss_pred HHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecChH--HHhhcccccccccccchHHHH-Hhhc
Confidence 4445555443 48999999999999999999987 334555542210 0000000000 000000000 0133
Q ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHh-----------cCCceEEEEecCC-----------cccchhhhcceeEEEecC
Q 021937 142 VKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQV-----------NKIIPALQSRCTRFRFAP 199 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~iil~~~~~-----------~~l~~~l~~r~~~i~~~~ 199 (305)
+.+++|||++.+.++.+..|..+++.. .++.++|+++|.. ..+.+++.+||..+.|..
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dy 260 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCC
Confidence 689999999999999999999998632 2467788888752 457889999999999988
Q ss_pred CCHHH
Q 021937 200 LEPVH 204 (305)
Q Consensus 200 ~~~~~ 204 (305)
|++.|
T Consensus 261 p~~~E 265 (383)
T PHA02244 261 DEKIE 265 (383)
T ss_pred CcHHH
Confidence 87433
No 215
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.29 E-value=1.1e-10 Score=101.42 Aligned_cols=109 Identities=20% Similarity=0.336 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCcCCH------------HHHHHHHHHHHHhc----------CCceEEEEe----cCCcccchhhhcce-
Q 021937 140 ASVKLVLLDEADAMTK------------DAQFALRRVIEKYT----------KNTRFALIC----NQVNKIIPALQSRC- 192 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~~----------~~~~iil~~----~~~~~l~~~l~~r~- 192 (305)
...++|||||+|++.. ..|..|+++++... .+..||+++ ..+..+.|.|..|+
T Consensus 248 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 327 (443)
T PRK05201 248 EQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFP 327 (443)
T ss_pred HcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 3578999999999963 25788999998522 223344333 34567889999998
Q ss_pred eEEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHhh
Q 021937 193 TRFRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLC--------NGDMRKALNILQSTHM 248 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~ 248 (305)
.++.+.+++.+++..+|.. .+..+|+ .+++++++.||+.+ +--.|.+...++.+..
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 6789999999999888732 2223354 57899999999865 2347788887776654
No 216
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.3e-11 Score=97.81 Aligned_cols=157 Identities=25% Similarity=0.346 Sum_probs=104.7
Q ss_pred ccccccchHHHHHHHHHHhc-------C-------CCCeEEEECCCCCcHHHHHHHHHHHHh----CCCCcccEEEeecC
Q 021937 52 LADVAAHRDIVDTIDRLTSE-------N-------RLPHLLLYGPPGTGKTSTILAVARKLY----GAQYHNMILELNAS 113 (305)
Q Consensus 52 ~~~~~g~~~~~~~l~~~l~~-------~-------~~~~~ll~G~~G~GKT~l~~~l~~~~~----~~~~~~~~~~~~~~ 113 (305)
|+.++.....+++|..+... + ....++++||||+|||+|.+++++.+. ...+....+++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 35566666677777766532 1 112389999999999999999999884 23455667788775
Q ss_pred CCc---------ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCH---------------HHHHHHHHHHHHhc
Q 021937 114 DDR---------GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTK---------------DAQFALRRVIEKYT 169 (305)
Q Consensus 114 ~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~~l~~~~ 169 (305)
... ....+-+.++++... +..--.++|||++.+.. ...++++.-++...
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d-------~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVED-------RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhC-------CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc
Confidence 421 122222333333322 12245689999998842 24677888888765
Q ss_pred C--CceEEEEecCCcccchhhhcce-eEEEecCCCHHHHHHHHHHHHHH
Q 021937 170 K--NTRFALICNQVNKIIPALQSRC-TRFRFAPLEPVHVTERLKHVIEA 215 (305)
Q Consensus 170 ~--~~~iil~~~~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~ 215 (305)
. ++.++.++|-.+.++.++..|. -+..+.+|+...+.++++.-...
T Consensus 294 ~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred cCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 3 4444445577788999999998 56788999999999988776543
No 217
>PRK15115 response regulator GlrR; Provisional
Probab=99.28 E-value=1.1e-09 Score=99.24 Aligned_cols=205 Identities=15% Similarity=0.196 Sum_probs=128.2
Q ss_pred ccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc
Q 021937 54 DVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (305)
.++|....+..+...+.. .....++++|++|+|||++|+.+.+.... ....++.++|.... ...+...+......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~~-~~~~~~~lfg~~~~ 211 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGALP-EQLLESELFGHARG 211 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCCC-HHHHHHHhcCCCcC
Confidence 355655555444443332 22345899999999999999999886432 24568888887642 22222222111100
Q ss_pred cccc--------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccc
Q 021937 132 QSFS--------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKII 185 (305)
Q Consensus 132 ~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l~ 185 (305)
.+. .......++|+|||++.++...|..|+.+++... .++++|++++.. ..+.
T Consensus 212 -~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 212 -AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred -CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 011 1123446899999999999999999999998642 145677666532 1233
Q ss_pred hhhhcce--eEEEecCCCH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc--C
Q 021937 186 PALQSRC--TRFRFAPLEP--VHVTERLKHVI----EAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--Q 251 (305)
Q Consensus 186 ~~l~~r~--~~i~~~~~~~--~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~--~ 251 (305)
+.+..|+ ..+.++|+.. +++..++...+ ...+ ..+++++++.+..+. +||+|.+.+.++.++..+ .
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~ 370 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSP 370 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 4555554 3456666654 34443333333 3233 248999999999987 999999999999877643 3
Q ss_pred ccCHHHHHhhh
Q 021937 252 QITEEAVYLCT 262 (305)
Q Consensus 252 ~i~~~~v~~~~ 262 (305)
.|+.+++...+
T Consensus 371 ~i~~~~l~~~~ 381 (444)
T PRK15115 371 VISDALVEQAL 381 (444)
T ss_pred ccChhhhhhhh
Confidence 58877775433
No 218
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.27 E-value=4.8e-10 Score=104.05 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=85.3
Q ss_pred CceEEEEEeCCCcCCHHHHHHHHHHHHHhc---------------------CCceEEEEecCC--cccchhhhccee---
Q 021937 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYT---------------------KNTRFALICNQV--NKIIPALQSRCT--- 193 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~---------------------~~~~iil~~~~~--~~l~~~l~~r~~--- 193 (305)
+++++|+|||++.++...|..|++++++.. .+.++|++++.. ..+.+++.+|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 556899999999999999999999997431 234566666543 467889999875
Q ss_pred E-EEecC---CCHHH---HHHHHHHHHHHcC--CCCCHHHHHHHHHHc----------CCCHHHHHHHHHHHhh-----c
Q 021937 194 R-FRFAP---LEPVH---VTERLKHVIEAEG--LDVTEGGLAALVRLC----------NGDMRKALNILQSTHM-----A 249 (305)
Q Consensus 194 ~-i~~~~---~~~~~---~~~~l~~~~~~~~--~~~~~~~~~~l~~~~----------~g~~r~~~~~l~~~~~-----~ 249 (305)
+ +.|+. .+.+. +..++.+.+.+.| ..++++++.++.++. ..+.|.+.++++.+.. .
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 34432 23333 3455555555553 258899998887543 2458888888876633 2
Q ss_pred cCccCHHHHHhhhCCC
Q 021937 250 SQQITEEAVYLCTGNP 265 (305)
Q Consensus 250 ~~~i~~~~v~~~~~~~ 265 (305)
...|+.++|++++...
T Consensus 376 ~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 376 KVYVTAEHVLKAKKLA 391 (608)
T ss_pred CceecHHHHHHHHHHH
Confidence 2458888888776544
No 219
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.26 E-value=2.1e-10 Score=99.48 Aligned_cols=143 Identities=23% Similarity=0.198 Sum_probs=95.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHh-----
Q 021937 54 DVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDF----- 128 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----- 128 (305)
.++|.++.+..+...+..+. +++|.||||+|||++|+.+++.+ ...++.+.+.......++.....-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l-----~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~ 97 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL-----GLPFVRIQCTPDLLPSDLLGTYAYAALLLE 97 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh-----CCCeEEEecCCCCCHHHhcCchhHhhhhcc
Confidence 37888888887777776664 59999999999999999999998 4567777776554443332211111
Q ss_pred hhcccccCCC--CCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------c-----CCceEEEEec-----CCcccchhhh
Q 021937 129 ASTQSFSFGV--KASVKLVLLDEADAMTKDAQFALRRVIEKY-------T-----KNTRFALICN-----QVNKIIPALQ 189 (305)
Q Consensus 129 ~~~~~~~~~~--~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------~-----~~~~iil~~~-----~~~~l~~~l~ 189 (305)
.....+..+. ..-..++++||+++..+..++.|+..+++. . ....++.+.| ....+++++.
T Consensus 98 ~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~l 177 (329)
T COG0714 98 PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALL 177 (329)
T ss_pred CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHH
Confidence 1111111110 000159999999999999999999999962 1 1223333446 3456789999
Q ss_pred cce-eEEEecCCCHH
Q 021937 190 SRC-TRFRFAPLEPV 203 (305)
Q Consensus 190 ~r~-~~i~~~~~~~~ 203 (305)
+|| ..+.++.|...
T Consensus 178 dRf~~~~~v~yp~~~ 192 (329)
T COG0714 178 DRFLLRIYVDYPDSE 192 (329)
T ss_pred hhEEEEEecCCCCch
Confidence 999 77888888333
No 220
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.25 E-value=1.7e-11 Score=96.73 Aligned_cols=114 Identities=23% Similarity=0.227 Sum_probs=68.7
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec----------------CC
Q 021937 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA----------------SD 114 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~----------------~~ 114 (305)
.|++++||+..+..|.-.+.++ ++++++||||+|||++|+.+...+..-.. ....++.. ..
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP~l~~-~e~le~~~i~s~~~~~~~~~~~~~~P 77 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLPPLTE-EEALEVSKIYSVAGLGPDEGLIRQRP 77 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS--CCE-ECCESS--S-TT---S---EEEE---
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCCCCch-HHHhhhccccccccCCCCCceecCCC
Confidence 3789999999999999988875 57999999999999999999976521110 00000000 00
Q ss_pred Cc---ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh
Q 021937 115 DR---GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (305)
Q Consensus 115 ~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~ 168 (305)
.. ........+... .......-..++++|||+||+..+.+...+.|++.+++.
T Consensus 78 fr~phhs~s~~~liGgg-~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 78 FRAPHHSASEAALIGGG-RPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp EEEE-TT--HHHHHEEG-GGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred cccCCCCcCHHHHhCCC-cCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 00 000111111110 111112224567899999999999999999999999964
No 221
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.25 E-value=6.2e-10 Score=101.39 Aligned_cols=204 Identities=20% Similarity=0.217 Sum_probs=133.5
Q ss_pred cccccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhh
Q 021937 53 ADVAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 130 (305)
..++|.......+...+.. .....+++.|++|+||+++++++...... ....++.++|... ..+.+...+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~--~~~~~~~~~c~~~-~~~~~~~~lfg~~- 209 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR--ANGPFIALNMAAI-PKDLIESELFGHE- 209 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC--CCCCeEEEeCCCC-CHHHHHHHhcCCC-
Confidence 3466766666655555543 22234899999999999999999886422 2457888888764 2222222221100
Q ss_pred cccccC--------CCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------ccc
Q 021937 131 TQSFSF--------GVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKI 184 (305)
Q Consensus 131 ~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l 184 (305)
...+.+ -..+.+++|+|||++.++...+..|++++++.. .++++|++++.. ..+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 000110 123446889999999999999999999998542 245677776432 234
Q ss_pred chhhhcce--eEEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc--
Q 021937 185 IPALQSRC--TRFRFAPLE--PVHVTERLKHVIE----AEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-- 250 (305)
Q Consensus 185 ~~~l~~r~--~~i~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~-- 250 (305)
.+.+..|+ ..++++|+. .+++..++...+. ..+ ..+++++++.|.++. +||+|.+.+.++.++..+
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 45666665 467888877 4566655554433 333 358999999999875 899999999999888754
Q ss_pred CccCHHHHHh
Q 021937 251 QQITEEAVYL 260 (305)
Q Consensus 251 ~~i~~~~v~~ 260 (305)
..|+.+++..
T Consensus 370 ~~i~~~~l~~ 379 (463)
T TIGR01818 370 DEVLVSDLPA 379 (463)
T ss_pred CcccHHhchH
Confidence 3477777653
No 222
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.1e-10 Score=101.25 Aligned_cols=192 Identities=17% Similarity=0.206 Sum_probs=125.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc--ChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCC
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEAD 151 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~ 151 (305)
.++++|.||+|+|||.|++++++++. ......+..++|+... ..+.+...+.......- ...+.||++||+|
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~-----~~~PSiIvLDdld 504 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL-----WYAPSIIVLDDLD 504 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHH-----hhCCcEEEEcchh
Confidence 44599999999999999999999986 3444455556776543 34444444444433221 1226999999999
Q ss_pred cCCHH----------H----HHHHHHHHHHhc---CCceEEEEecCCcccchhhhcc--e-eEEEecCCCHHHHHHHHHH
Q 021937 152 AMTKD----------A----QFALRRVIEKYT---KNTRFALICNQVNKIIPALQSR--C-TRFRFAPLEPVHVTERLKH 211 (305)
Q Consensus 152 ~l~~~----------~----~~~l~~~l~~~~---~~~~iil~~~~~~~l~~~l~~r--~-~~i~~~~~~~~~~~~~l~~ 211 (305)
.+... . ...+.+.+..+. ....+|.++.....+.+.+.+. | .++++++|...++.+++..
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~ 584 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTT 584 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHH
Confidence 98530 1 223334444332 2334555667777777777654 4 4589999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCCC-HH-------HHHHHH--HHHhhccCccCHHHHHhhhCCCChhhHH
Q 021937 212 VIEAEGLDVTEGGLAALVRLCNGD-MR-------KALNIL--QSTHMASQQITEEAVYLCTGNPLPKDIE 271 (305)
Q Consensus 212 ~~~~~~~~~~~~~~~~l~~~~~g~-~r-------~~~~~l--~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 271 (305)
.+++.......+.++.++..++|- ++ +++... +..+...+-.+.+++.+.+.......+.
T Consensus 585 ~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR 654 (952)
T KOG0735|consen 585 IFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALR 654 (952)
T ss_pred HHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhh
Confidence 998887777778888899999883 22 222221 2333333457888888877666555443
No 223
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.24 E-value=1.1e-10 Score=90.66 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=77.6
Q ss_pred cccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcc
Q 021937 55 VAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ 132 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 132 (305)
++|.+..++.+.+.+.. ....+++|+|++||||+.+|+++.+.- ......|+.++|... ..+.+...+..... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~-~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAAL-PEELLESELFGHEK-G 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTTS--HHHHHHHHHEBCS-S
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhhh-hcchhhhhhhcccc-c
Confidence 46777777777666654 223459999999999999999998843 223567999999874 23333222221110 0
Q ss_pred cccCC--------CCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-----------cCCceEEEEecC
Q 021937 133 SFSFG--------VKASVKLVLLDEADAMTKDAQFALRRVIEKY-----------TKNTRFALICNQ 180 (305)
Q Consensus 133 ~~~~~--------~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~iil~~~~ 180 (305)
.+.+. ..+..++|+|||++.|+...|..|++++++. +.++++|++|+.
T Consensus 77 ~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 77 AFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 11111 2355789999999999999999999999963 235677777764
No 224
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.22 E-value=7.9e-10 Score=102.45 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=113.6
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC--CCcChh--HHHHHHHHhhhcccccC--CCCCceEE
Q 021937 71 ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS--DDRGID--VVRQQIQDFASTQSFSF--GVKASVKL 144 (305)
Q Consensus 71 ~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~~~~~~~~~~~--~~~~~~~v 144 (305)
.....+++|.|++|+|||++++.+++.+.. ...|+.+... ...-.. .+...+... ...+.. -..++.++
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~---~~pfv~i~~~~t~d~L~G~idl~~~~~~g--~~~~~~G~L~~A~~Gv 87 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPP---IMPFVELPLGVTEDRLIGGIDVEESLAGG--QRVTQPGLLDEAPRGV 87 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCc---CCCeEecCcccchhhcccchhhhhhhhcC--cccCCCCCeeeCCCCc
Confidence 334567999999999999999999997632 2235554431 110011 111111100 001111 12355689
Q ss_pred EEEeCCCcCCHHHHHHHHHHHHHhc-------------CCceEEEEecCCc---ccchhhhcce-eEEEecC-CCHHHHH
Q 021937 145 VLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQVN---KIIPALQSRC-TRFRFAP-LEPVHVT 206 (305)
Q Consensus 145 liiDe~~~l~~~~~~~l~~~l~~~~-------------~~~~iil~~~~~~---~l~~~l~~r~-~~i~~~~-~~~~~~~ 206 (305)
++|||++.+++..+..|+..+++.. ....+|.++|... .+.+.+..|+ ..+.+.. ++.++..
T Consensus 88 L~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 88 LYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred EeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 9999999999999999999998642 3345565555443 5788899997 3344433 3445555
Q ss_pred HHHHHHH---------------------H--HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHhh-----ccCccC
Q 021937 207 ERLKHVI---------------------E--AEGLDVTEGGLAALVRLC---N-GDMRKALNILQSTHM-----ASQQIT 254 (305)
Q Consensus 207 ~~l~~~~---------------------~--~~~~~~~~~~~~~l~~~~---~-g~~r~~~~~l~~~~~-----~~~~i~ 254 (305)
+++.... . ...+.++++.++.|++.+ + ..+|..+..++.+.. ....++
T Consensus 168 eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~ 247 (589)
T TIGR02031 168 EIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVT 247 (589)
T ss_pred HHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCC
Confidence 5554432 1 124578888888887765 2 236776666643332 335699
Q ss_pred HHHHHhhhC
Q 021937 255 EEAVYLCTG 263 (305)
Q Consensus 255 ~~~v~~~~~ 263 (305)
.++|+.++.
T Consensus 248 ~~Dv~~a~~ 256 (589)
T TIGR02031 248 EEDLKLAVE 256 (589)
T ss_pred HHHHHHHHH
Confidence 999987763
No 225
>PRK12377 putative replication protein; Provisional
Probab=99.22 E-value=6.9e-11 Score=97.26 Aligned_cols=132 Identities=21% Similarity=0.330 Sum_probs=77.8
Q ss_pred hhcCCCCccccc----cchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021937 45 EKYRPQSLADVA----AHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 45 ~~~~p~~~~~~~----g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
..+...+|+++. |+...+.....++.. ....+++|+||+|+|||+++.++++.+...+....++.+. + -.
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~--~--l~ 141 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP--D--VM 141 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH--H--HH
Confidence 344455677775 334455555555443 2235699999999999999999999997766554444332 1 11
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCC--CcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021937 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEA--DAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~--~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
..+............+ ...-....||+|||+ +..++..+..|+.+++.... ....|++||..
T Consensus 142 ~~l~~~~~~~~~~~~~-l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 142 SRLHESYDNGQSGEKF-LQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHhccchHHHH-HHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1111111000000000 000123689999999 55567778899999997654 46677888754
No 226
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.22 E-value=3.3e-11 Score=93.86 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=68.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~ 150 (305)
..++|.||+|+|||.+++++++.+.. +....++.++.+.... ...+...+......... ....||++||+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~-----~~~gVVllDEi 77 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGA-----EEGGVVLLDEI 77 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHH-----HHHTEEEEETG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHhhhhhhhhcccceeec-----cchhhhhhHHH
Confidence 35899999999999999999999952 1234677777766544 22222222222111111 11359999999
Q ss_pred CcCCH-----------HHHHHHHHHHHHhc-----------CCceEEEEecCCc
Q 021937 151 DAMTK-----------DAQFALRRVIEKYT-----------KNTRFALICNQVN 182 (305)
Q Consensus 151 ~~l~~-----------~~~~~l~~~l~~~~-----------~~~~iil~~~~~~ 182 (305)
|+..+ ..++.|++++++.. .+..||+++|-..
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999 99999999999642 3556777776443
No 227
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.22 E-value=9.3e-10 Score=100.12 Aligned_cols=203 Identities=17% Similarity=0.217 Sum_probs=127.5
Q ss_pred cccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhh
Q 021937 53 ADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAS 130 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 130 (305)
..++|.......+...+... ....++++|++|+||+++++.+..... .....++.++|.... ...+...+....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~~~i~c~~~~-~~~~~~~lfg~~- 218 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR--RAKGPFIKVNCAALP-ESLLESELFGHE- 218 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC--CCCCCeEEEECCCCC-HHHHHHHhcCCC-
Confidence 45667666555555554432 223499999999999999999987542 234568888887642 222222211100
Q ss_pred ccccc--------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------ccc
Q 021937 131 TQSFS--------FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKI 184 (305)
Q Consensus 131 ~~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l 184 (305)
...+. .-..+.+++|+|||++.++...+..|+.++++.. .++++|++++.. ..+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 00011 1123456899999999999999999999998532 235777777533 134
Q ss_pred chhhhcce--eEEEecCCCH--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc--
Q 021937 185 IPALQSRC--TRFRFAPLEP--VHVTER----LKHVIEAEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS-- 250 (305)
Q Consensus 185 ~~~l~~r~--~~i~~~~~~~--~~~~~~----l~~~~~~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~-- 250 (305)
.+.+..|+ ..+.++|+.. +++..+ +.+...+.+ ..+++++++.+..+. +||+|.+.+.++.++...
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 45555555 3456666653 333333 333333323 358999999988865 899999999998887644
Q ss_pred CccCHHHHH
Q 021937 251 QQITEEAVY 259 (305)
Q Consensus 251 ~~i~~~~v~ 259 (305)
..|+.+++.
T Consensus 379 ~~i~~~~l~ 387 (457)
T PRK11361 379 PIIFSEDLP 387 (457)
T ss_pred CcccHHHCh
Confidence 347777764
No 228
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.19 E-value=2.9e-10 Score=99.86 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=94.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC--cccEEEeecCCC------------cC
Q 021937 52 LADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILELNASDD------------RG 117 (305)
Q Consensus 52 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~~~~------------~~ 117 (305)
++++++.+..++.+...+..+ .+++|+||||+|||++|+.++..+..... ....+.+..... .+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 456777888888888888764 46999999999999999999998743221 122233321110 00
Q ss_pred ----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHH-HHHHHHHHHH----------------------hcC
Q 021937 118 ----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDA-QFALRRVIEK----------------------YTK 170 (305)
Q Consensus 118 ----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~-~~~l~~~l~~----------------------~~~ 170 (305)
...+.+.+..+.. ...++.++||||+++...+. ...++.+++. .|.
T Consensus 252 y~~~~G~f~~~~~~A~~-------~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKE-------QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE 324 (459)
T ss_pred eEecCchHHHHHHHHHh-------cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCC
Confidence 0011122222211 11236899999999998554 5666666652 134
Q ss_pred CceEEEEecCCc----ccchhhhcceeEEEecC-CCHHHHHHHHH
Q 021937 171 NTRFALICNQVN----KIIPALQSRCTRFRFAP-LEPVHVTERLK 210 (305)
Q Consensus 171 ~~~iil~~~~~~----~l~~~l~~r~~~i~~~~-~~~~~~~~~l~ 210 (305)
+..||.++|..+ .++.++++||..+.+.| ++...+.+++.
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 556677776554 57889999999988887 45555666553
No 229
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.19 E-value=1.2e-09 Score=101.25 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=81.6
Q ss_pred CCceEEEEEeCCCcCCHHHHHHHHHHHHHhc---------------------CCceEEEEecCC--cccchhhhccee--
Q 021937 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYT---------------------KNTRFALICNQV--NKIIPALQSRCT-- 193 (305)
Q Consensus 139 ~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~---------------------~~~~iil~~~~~--~~l~~~l~~r~~-- 193 (305)
++++++|+|||++.+++..|..|+++++... .+.++|++++.. ..++++|..|+.
T Consensus 224 kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~ 303 (637)
T PRK13765 224 KAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGY 303 (637)
T ss_pred ECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccC
Confidence 3567899999999999999999999996432 134677777653 346788888874
Q ss_pred --EEEecC---CCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CCC-------HHHHHHHHHHHhhc----
Q 021937 194 --RFRFAP---LEPVHVTERLKHVIEAE-----GLDVTEGGLAALVRLC---NGD-------MRKALNILQSTHMA---- 249 (305)
Q Consensus 194 --~i~~~~---~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~~---~g~-------~r~~~~~l~~~~~~---- 249 (305)
.+.|.. -+.+....++...++.. -..++++++..|.++. .|+ .|.+.++++.+...
T Consensus 304 ~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~ 383 (637)
T PRK13765 304 GYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSE 383 (637)
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhh
Confidence 355543 22455555555444332 2368999998888754 233 67777777665432
Q ss_pred -cCccCHHHHHhhh
Q 021937 250 -SQQITEEAVYLCT 262 (305)
Q Consensus 250 -~~~i~~~~v~~~~ 262 (305)
.+.++.++|.++.
T Consensus 384 ~~~~i~~~~v~~a~ 397 (637)
T PRK13765 384 GAELTTAEHVLEAK 397 (637)
T ss_pred ccceecHHHHHHHH
Confidence 2347777776665
No 230
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.18 E-value=5.3e-10 Score=102.26 Aligned_cols=155 Identities=22% Similarity=0.202 Sum_probs=92.6
Q ss_pred ccccchHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC--hh
Q 021937 54 DVAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--ID 119 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~ 119 (305)
.+.|++..+..+.-.+-++.. .|++|+|+||+|||++++.+++.... ..+.........+ ..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r----~~~~~~~~~~~~~l~~~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR----AVYTTGKGSSAVGLTAA 279 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc----ceEcCCCCCCcCCcccc
Confidence 566777777766666655421 26999999999999999999987521 1122110011000 00
Q ss_pred HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-------------CCceEEEEecCCc----
Q 021937 120 VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQVN---- 182 (305)
Q Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------------~~~~iil~~~~~~---- 182 (305)
..+...... .....+.-..+..++++|||++.+....+..|+..+++.. ....+|.++|...
T Consensus 280 ~~~~~~~g~-~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~ 358 (509)
T smart00350 280 VTRDPETRE-FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYD 358 (509)
T ss_pred ceEccCcce-EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccC
Confidence 000000000 0000001123456899999999999999999999998532 4556777776432
Q ss_pred ---------ccchhhhcce-eE-EEecCCCHHHHHHHHHHHH
Q 021937 183 ---------KIIPALQSRC-TR-FRFAPLEPVHVTERLKHVI 213 (305)
Q Consensus 183 ---------~l~~~l~~r~-~~-i~~~~~~~~~~~~~l~~~~ 213 (305)
.+++++.+|| .. +....++.+.-.++..+.+
T Consensus 359 ~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 359 PKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 5788999999 33 3445666666556655543
No 231
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=1.6e-08 Score=99.65 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=119.1
Q ss_pred CCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHH
Q 021937 48 RPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQD 127 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (305)
.|.....++-++...+.|... ...+..+|+||+|.||||++..++... + ...++.++..+..........+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~---~-~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK---N-NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC---C-CeEEEecCcccCCHHHHHHHHHHH
Confidence 355567788888887777532 344558999999999999999988653 2 344555554443221111111111
Q ss_pred hhhccc------------c--c------------CCCCCceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEecC
Q 021937 128 FASTQS------------F--S------------FGVKASVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 128 ~~~~~~------------~--~------------~~~~~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..... . . ......+.+|+|||+|.+.... ...+..++...+.+..+|+++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 110000 0 0 0011457899999999998554 44677777777878888888755
Q ss_pred Cccc-chhhhcceeEEEec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 021937 181 VNKI-IPALQSRCTRFRFA----PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 245 (305)
Q Consensus 181 ~~~l-~~~l~~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 245 (305)
...+ ...+.-+...+.+. +++.+|..+++.... |..++++.+..|++.|+|+|-.+.-....
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3322 22333233334444 889999999886543 67789999999999999999776544433
No 232
>PRK08116 hypothetical protein; Validated
Probab=99.14 E-value=1e-09 Score=91.93 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=85.1
Q ss_pred hcCCCCccccccch---HHHHHHHHHHhc---C--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC
Q 021937 46 KYRPQSLADVAAHR---DIVDTIDRLTSE---N--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (305)
Q Consensus 46 ~~~p~~~~~~~g~~---~~~~~l~~~l~~---~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (305)
++...+|+++...+ ..+.....++.. . ....++|+|++|+|||+|+.++++.+...+.. ++.++....
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~--v~~~~~~~l-- 153 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVP--VIFVNFPQL-- 153 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEEHHHH--
Confidence 44445677665432 234444444442 1 22349999999999999999999998765443 333332110
Q ss_pred hhHHHHHHHHhhhcc--cccCCCCCceEEEEEeCC--CcCCHHHHHHHHHHHHHhc-CCceEEEEecCCcc-----cchh
Q 021937 118 IDVVRQQIQDFASTQ--SFSFGVKASVKLVLLDEA--DAMTKDAQFALRRVIEKYT-KNTRFALICNQVNK-----IIPA 187 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~--~~~~~~~~~~~vliiDe~--~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~~-----l~~~ 187 (305)
...+...+....... .+.. .-....+|+|||+ +......+..|+.+++... ....+|++||.... +...
T Consensus 154 l~~i~~~~~~~~~~~~~~~~~-~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~r 232 (268)
T PRK08116 154 LNRIKSTYKSSGKEDENEIIR-SLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKR 232 (268)
T ss_pred HHHHHHHHhccccccHHHHHH-HhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHH
Confidence 111111110000000 0000 0012579999999 5556667888999998643 45678888875532 3445
Q ss_pred hhcc----eeEEEecCCCH
Q 021937 188 LQSR----CTRFRFAPLEP 202 (305)
Q Consensus 188 l~~r----~~~i~~~~~~~ 202 (305)
+.+| +..+.+..++.
T Consensus 233 i~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 233 IYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHHHcCEEEEeeCcCh
Confidence 6666 56677766664
No 233
>PF13173 AAA_14: AAA domain
Probab=99.12 E-value=9.7e-10 Score=81.83 Aligned_cols=120 Identities=24% Similarity=0.349 Sum_probs=75.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHH-HHHHHhhhcccccCCCCCceEEEEEeCCCcC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR-QQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l 153 (305)
+.++|+||.|+||||+++.+++.+. ....++.++..+........ +....+... . ..+..+|+|||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLEL--I----KPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHh--h----ccCCcEEEEehhhhh
Confidence 4589999999999999999998874 12345555544422211100 011111111 0 013689999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEecCCcc----cchhhhcceeEEEecCCCHHHH
Q 021937 154 TKDAQFALRRVIEKYTKNTRFALICNQVNK----IIPALQSRCTRFRFAPLEPVHV 205 (305)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~iil~~~~~~~----l~~~l~~r~~~i~~~~~~~~~~ 205 (305)
. +-...+-.+.+.. .+..++++++.... ....+..|...+++.|++.+|.
T Consensus 74 ~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 P-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred c-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7 3344444455544 46788888754433 3456777888899999998774
No 234
>PRK08181 transposase; Validated
Probab=99.11 E-value=6.2e-10 Score=92.78 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=65.0
Q ss_pred HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc--CCCCCceEE
Q 021937 67 RLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS--FGVKASVKL 144 (305)
Q Consensus 67 ~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~v 144 (305)
.++.. ..+++|+||+|+|||+++.++++.+...++...++.. ..+...+.......... ...-.+..+
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~--------~~L~~~l~~a~~~~~~~~~l~~l~~~dL 170 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT--------TDLVQKLQVARRELQLESAIAKLDKFDL 170 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH--------HHHHHHHHHHHhCCcHHHHHHHHhcCCE
Confidence 45553 3469999999999999999999988666655444432 11222121111000000 000012589
Q ss_pred EEEeCCCcCC--HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 145 VLLDEADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 145 liiDe~~~l~--~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
|+|||++... ......|+++++....+..+|+++|..
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999998775 345678999998765556788888654
No 235
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.10 E-value=9.9e-10 Score=79.57 Aligned_cols=111 Identities=26% Similarity=0.267 Sum_probs=56.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHH-HH-hhhcccccCCCCCceEEEEEeCCCcC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQI-QD-FASTQSFSFGVKASVKLVLLDEADAM 153 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~-~~~~~~~~~~~~~~~~vliiDe~~~l 153 (305)
|++|+|+||+|||++|+++++.+ ...+..+.........++...- .+ ......+..+ .--..++++||+++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-----~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~G-Pif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-----GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPG-PIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-----T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE--TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHc-----CCceeEEEecCCCCcccceeeeeeccCCCeeEeecC-hhhhceeeecccccC
Confidence 68999999999999999999997 3445555544322222221100 00 0000000000 011359999999999
Q ss_pred CHHHHHHHHHHHHHhc----------CCceEEEEe-cCCc-----ccchhhhcce
Q 021937 154 TKDAQFALRRVIEKYT----------KNTRFALIC-NQVN-----KIIPALQSRC 192 (305)
Q Consensus 154 ~~~~~~~l~~~l~~~~----------~~~~iil~~-~~~~-----~l~~~l~~r~ 192 (305)
++..|.+|++.+++.. ++..++++| |..+ .+++++.+||
T Consensus 75 ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp -HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 9999999999999742 222344444 5433 4667777775
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.10 E-value=6.3e-10 Score=91.37 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=77.8
Q ss_pred hhhcCCCCcccccc----chHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC
Q 021937 44 VEKYRPQSLADVAA----HRDIVDTIDRLTSENR--LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG 117 (305)
Q Consensus 44 ~~~~~p~~~~~~~g----~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (305)
+..+.+.+|+++.. +...+..+..++.... ..+++|+|++|+|||+++.++++.+...+....++.+ .
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~--~---- 136 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV--A---- 136 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH--H----
Confidence 45566677887763 3445666666665422 2469999999999999999999998766554433322 1
Q ss_pred hhHHHHHHHHhhhcc--c---ccCCCCCceEEEEEeCCCcCCHH--HHHHHHHHHHHhc-CCceEEEEecCC
Q 021937 118 IDVVRQQIQDFASTQ--S---FSFGVKASVKLVLLDEADAMTKD--AQFALRRVIEKYT-KNTRFALICNQV 181 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~--~---~~~~~~~~~~vliiDe~~~l~~~--~~~~l~~~l~~~~-~~~~iil~~~~~ 181 (305)
.+...+....... . +.. .-....+|+|||++..... ....|+.+++... ....+|++||..
T Consensus 137 --~l~~~l~~~~~~~~~~~~~~l~-~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 137 --DIMSAMKDTFSNSETSEEQLLN-DLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred --HHHHHHHHHHhhccccHHHHHH-HhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 1111111110000 0 000 0123689999999876533 4557888888644 366777888754
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.09 E-value=4.5e-10 Score=84.83 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=78.9
Q ss_pred ccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc
Q 021937 56 AAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS 133 (305)
Q Consensus 56 ~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 133 (305)
+|....++.+++.+.. ....+++|+|++|+||+++|+.+...-.. ....++.+++.... .+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~-----~~~l~~a----- 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP-----AELLEQA----- 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-----HHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-----HHHHHHc-----
Confidence 4666666766666654 22344999999999999999999886422 22234444444321 1222221
Q ss_pred ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-cCCceEEEEecCC-c------ccchhhhcce--eEEEecC
Q 021937 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-TKNTRFALICNQV-N------KIIPALQSRC--TRFRFAP 199 (305)
Q Consensus 134 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-~~~~~iil~~~~~-~------~l~~~l~~r~--~~i~~~~ 199 (305)
..+.++|+|++.++.+.+..|.++++.. ..+.++|+++... . .+.+.+..++ ..+.+||
T Consensus 69 -------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 69 -------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp -------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred -------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 2589999999999999999999999865 4577888887432 2 3456666665 4566655
No 238
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.09 E-value=3.9e-09 Score=95.51 Aligned_cols=151 Identities=20% Similarity=0.197 Sum_probs=93.1
Q ss_pred CCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc-C-----------
Q 021937 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-G----------- 117 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~----------- 117 (305)
..|.++.|+...++.+...+.++ .+++|.||+|+|||++++.+...+.... ....++....... +
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~~~-~~~~le~~~i~s~~g~~~~~~~~~~~ 265 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPPLT-NEEAIETARIWSLVGKLIDRKQIKQR 265 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCCCC-CcEEEeccccccchhhhccccccccC
Confidence 37899999999988888777554 5699999999999999999987652211 1111111110000 0
Q ss_pred -hh------HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------------cCCceEEEE
Q 021937 118 -ID------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALI 177 (305)
Q Consensus 118 -~~------~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~iil~ 177 (305)
.. .....+... .......-..++++++||||++.+++..++.|++.++.. +.+..+|.+
T Consensus 266 Pf~~p~~s~s~~~~~ggg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 266 PFRSPHHSASKPALVGGG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CccccccccchhhhhCCc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 00 000000000 000000112355789999999999999999999999864 245667777
Q ss_pred ecCC-----------------------cccchhhhcce-eEEEecCCCHHH
Q 021937 178 CNQV-----------------------NKIIPALQSRC-TRFRFAPLEPVH 204 (305)
Q Consensus 178 ~~~~-----------------------~~l~~~l~~r~-~~i~~~~~~~~~ 204 (305)
+|.. .++...+.+|+ ..+.+++++..+
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 6542 14667778888 557777775543
No 239
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.08 E-value=1e-08 Score=92.83 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=125.3
Q ss_pred cccchHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcc
Q 021937 55 VAAHRDIVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQ 132 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 132 (305)
++|.......+...+.. .....++++|.+|+||+++++.+..... .....++.++|.... ...+...+.......
T Consensus 141 lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~--~~~~~~i~~~c~~~~-~~~~~~~lfg~~~~~ 217 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA--RSEKPLVTLNCAALN-ESLLESELFGHEKGA 217 (441)
T ss_pred eEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCC--CCCCCeeeeeCCCCC-HHHHHHHhcCCCCCC
Confidence 44544444444333322 2223489999999999999999987642 234578888888642 233333221111000
Q ss_pred -------cccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCCc-------ccchh
Q 021937 133 -------SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQVN-------KIIPA 187 (305)
Q Consensus 133 -------~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~~-------~l~~~ 187 (305)
....-..+.+++|+|||++.++...+..|+.+++... .++++|++++... .+.+.
T Consensus 218 ~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~ 297 (441)
T PRK10365 218 FTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQD 297 (441)
T ss_pred cCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHH
Confidence 0011133457899999999999999999999998642 1345666664321 23445
Q ss_pred hhccee--EEEecCCCH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHhhcc--Ccc
Q 021937 188 LQSRCT--RFRFAPLEP--VHVTERLKHVIE----AEG---LDVTEGGLAALVRLC-NGDMRKALNILQSTHMAS--QQI 253 (305)
Q Consensus 188 l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~--~~i 253 (305)
+..++. .+.++|+.. +++..++...+. +.+ ..+++++++.+..+. +||+|.+.+.++.++... ..|
T Consensus 298 l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~i 377 (441)
T PRK10365 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYI 377 (441)
T ss_pred HHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCcc
Confidence 555553 455555543 244444443333 223 248999999999877 999999999999877643 357
Q ss_pred CHHHHHh
Q 021937 254 TEEAVYL 260 (305)
Q Consensus 254 ~~~~v~~ 260 (305)
+.+++..
T Consensus 378 ~~~~l~~ 384 (441)
T PRK10365 378 SERELPL 384 (441)
T ss_pred chHhCch
Confidence 7777653
No 240
>PF05729 NACHT: NACHT domain
Probab=99.07 E-value=2.9e-09 Score=82.90 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=82.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcc----cEEEeecCCCcCh---hHHHHHHHHhhhccccc-------CCCCCc
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHN----MILELNASDDRGI---DVVRQQIQDFASTQSFS-------FGVKAS 141 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-------~~~~~~ 141 (305)
.++|+|++|+|||++++.++..+....... .++.+........ ..+.+.+.......... .....+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 378999999999999999999886554322 2223333222111 12333332221111000 012345
Q ss_pred eEEEEEeCCCcCCHHHH--------HHHHHHHHH-hcCCceEEEEecCCcc-cchhhhcceeEEEecCCCHHHHHHHHHH
Q 021937 142 VKLVLLDEADAMTKDAQ--------FALRRVIEK-YTKNTRFALICNQVNK-IIPALQSRCTRFRFAPLEPVHVTERLKH 211 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~--------~~l~~~l~~-~~~~~~iil~~~~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 211 (305)
..+++||.+|.+..... ..|..++.. .+.+.+++++++.... -..........+.+.+++.+++.+++.+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRK 161 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHH
Confidence 78999999999876332 245555554 4557888888765432 1222222236789999999999999988
Q ss_pred HHH
Q 021937 212 VIE 214 (305)
Q Consensus 212 ~~~ 214 (305)
+++
T Consensus 162 ~f~ 164 (166)
T PF05729_consen 162 YFS 164 (166)
T ss_pred Hhh
Confidence 764
No 241
>PRK06526 transposase; Provisional
Probab=99.07 E-value=4.7e-10 Score=93.02 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=72.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc--CCCCCceEEEEEeCCC
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS--FGVKASVKLVLLDEAD 151 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~vliiDe~~ 151 (305)
..+++|+||+|+|||+++.+++.++...++...+.... .+...+.......... ...-.+..+|||||++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~--------~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g 169 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA--------QWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVG 169 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH--------HHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccc
Confidence 35699999999999999999999886655554332211 1111111110000000 0001235899999999
Q ss_pred cCC--HHHHHHHHHHHHHhcCCceEEEEecCCcc--------------cchhhhcceeEEEecCCCHH
Q 021937 152 AMT--KDAQFALRRVIEKYTKNTRFALICNQVNK--------------IIPALQSRCTRFRFAPLEPV 203 (305)
Q Consensus 152 ~l~--~~~~~~l~~~l~~~~~~~~iil~~~~~~~--------------l~~~l~~r~~~i~~~~~~~~ 203 (305)
... ....+.|+.+++....+..+|+++|.... +.+.+...+.++.|...+..
T Consensus 170 ~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 170 YIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 875 56677899999865545678888865432 12333334566777665544
No 242
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.05 E-value=5.6e-09 Score=85.69 Aligned_cols=175 Identities=18% Similarity=0.239 Sum_probs=111.5
Q ss_pred ccccchHHHHHHHHHHh----cCCC--Ce-EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee-----cCCCcChhHH
Q 021937 54 DVAAHRDIVDTIDRLTS----ENRL--PH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN-----ASDDRGIDVV 121 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~----~~~~--~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 121 (305)
.+.||.-+.+.+.+.++ ...+ |. +-++|++||||+..++.+++.+...+....++..- .+....++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 36676666665555544 3322 22 67999999999999999999998877666655433 3333334444
Q ss_pred HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-------CCceEEEEecCCcccch--------
Q 021937 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------KNTRFALICNQVNKIIP-------- 186 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------~~~~iil~~~~~~~l~~-------- 186 (305)
+..+........ ..+.+.+.|+||+|+|.+...+.|-..++.++ .+..+|+.+|.......
T Consensus 163 k~eL~~~v~~~v----~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 163 KEELKNRVRGTV----QACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred HHHHHHHHHHHH----HhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 444433322211 24557999999999999999888888888543 35678888753321111
Q ss_pred ---------------hhh-------------cc------e-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 021937 187 ---------------ALQ-------------SR------C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRL 231 (305)
Q Consensus 187 ---------------~l~-------------~r------~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 231 (305)
.+. ++ . ..+.|-|++...+...++....+.|.-.+.+.++.+++.
T Consensus 239 ~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 239 NGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVERVANS 318 (344)
T ss_pred cCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHHHHHHh
Confidence 110 00 0 236677777777777777777777776677777777664
Q ss_pred c
Q 021937 232 C 232 (305)
Q Consensus 232 ~ 232 (305)
.
T Consensus 319 l 319 (344)
T KOG2170|consen 319 L 319 (344)
T ss_pred h
Confidence 3
No 243
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1e-08 Score=84.85 Aligned_cols=167 Identities=22% Similarity=0.337 Sum_probs=100.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~ 150 (305)
+++++.||+|+|||.||+.+|+.+ ..+|...++..... -+++...+..+.+...+.- .++.+++|+|||+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L-----nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV-~rAerGIIyIDEI 171 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL-----NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDV-ERAERGIIYIDEI 171 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh-----CCCeeeccccchhhccccchhHHHHHHHHHHHcccCH-HHHhCCeEEEech
Confidence 459999999999999999999998 44444444433211 1233333333333332221 3445789999999
Q ss_pred CcCCH--------------HHHHHHHHHHHHh----cC---------------CceEEEEec------------------
Q 021937 151 DAMTK--------------DAQFALRRVIEKY----TK---------------NTRFALICN------------------ 179 (305)
Q Consensus 151 ~~l~~--------------~~~~~l~~~l~~~----~~---------------~~~iil~~~------------------ 179 (305)
|++.. ..|++|+++++.. |+ ...++|++-
T Consensus 172 DKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~ 251 (408)
T COG1219 172 DKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKG 251 (408)
T ss_pred hhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCc
Confidence 99953 3589999999942 10 112333320
Q ss_pred ------C----------------------Ccccchhhhcce-eEEEecCCCHHHHHHHHHH-----------HHHHcCC-
Q 021937 180 ------Q----------------------VNKIIPALQSRC-TRFRFAPLEPVHVTERLKH-----------VIEAEGL- 218 (305)
Q Consensus 180 ------~----------------------~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~-----------~~~~~~~- 218 (305)
. ...+.|.+..|+ .+..+.+++.+.+.+++.. .+...++
T Consensus 252 iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~ 331 (408)
T COG1219 252 IGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVE 331 (408)
T ss_pred ccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCce
Confidence 0 012345666666 4567889999998877743 1222233
Q ss_pred -CCCHHHHHHHHHHc---CCCHHHHHHHHHHHh
Q 021937 219 -DVTEGGLAALVRLC---NGDMRKALNILQSTH 247 (305)
Q Consensus 219 -~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~ 247 (305)
.++++++..|++.+ .--.|-+...++.+.
T Consensus 332 L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~l 364 (408)
T COG1219 332 LEFTEEALKAIAKKAIERKTGARGLRSIIEELL 364 (408)
T ss_pred EEEcHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 57899999998765 122454555554443
No 244
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.03 E-value=5e-08 Score=78.61 Aligned_cols=185 Identities=18% Similarity=0.239 Sum_probs=117.0
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc--
Q 021937 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS-- 135 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 135 (305)
+.+.+..+...+..+. ..+.++|+.|+|||.+.+++...+... ....+.++.........+...+.++...+...
T Consensus 36 h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 36 HNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred hhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 4455556666665553 247899999999999999777766432 23334444444322222222222222211000
Q ss_pred -------------CCCCCceEEEEEeCCCcCCHHHHHHHHHHHH---HhcCCceEEEEecCC-c-----ccchhhhccee
Q 021937 136 -------------FGVKASVKLVLLDEADAMTKDAQFALRRVIE---KYTKNTRFALICNQV-N-----KIIPALQSRCT 193 (305)
Q Consensus 136 -------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~---~~~~~~~iil~~~~~-~-----~l~~~l~~r~~ 193 (305)
.....++-++++||+|.+..+..+.|..+.+ +......+++++... . .....+..|+.
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRID 192 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEE
Confidence 0011334799999999999888777666655 333334455555221 1 12345566786
Q ss_pred E-EEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 021937 194 R-FRFAPLEPVHVTERLKHVIEAEGL---DVTEGGLAALVRLCNGDMRKALNILQS 245 (305)
Q Consensus 194 ~-i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~~ 245 (305)
. +.++|++.++...+++.+++..+. -++++++..++..+.|-||.+-+.+..
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 6 999999999999999999987754 368899999999999977766666543
No 245
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.9e-08 Score=83.90 Aligned_cols=133 Identities=22% Similarity=0.334 Sum_probs=87.7
Q ss_pred CceEEEEEeCCCcCCHH------------HHHHHHHHHHHhcC--------CceEEEEe------cCCcccchhhhcce-
Q 021937 140 ASVKLVLLDEADAMTKD------------AQFALRRVIEKYTK--------NTRFALIC------NQVNKIIPALQSRC- 192 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~~------------~~~~l~~~l~~~~~--------~~~iil~~------~~~~~l~~~l~~r~- 192 (305)
...++|||||+|++... .|.-|+.+++...- .-.++|++ ..++.+.|.|..|+
T Consensus 249 E~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred HhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 34559999999998432 35568888874321 11233333 56778999999998
Q ss_pred eEEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---C-----CCHHHHHHHHHHHhh---
Q 021937 193 TRFRFAPLEPVHVTERLKH-----------VIEAEGL--DVTEGGLAALVRLC---N-----GDMRKALNILQSTHM--- 248 (305)
Q Consensus 193 ~~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~~---~-----g~~r~~~~~l~~~~~--- 248 (305)
-.+.+.+++.+++..++.. .+..+++ .++++++..|++.+ + =-.|++...++.+..
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediS 408 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDIS 408 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhC
Confidence 6699999999998877632 2233444 57999999999765 1 237888888766553
Q ss_pred -cc-------CccCHHHHHhhhCCC-ChhhHHH
Q 021937 249 -AS-------QQITEEAVYLCTGNP-LPKDIEQ 272 (305)
Q Consensus 249 -~~-------~~i~~~~v~~~~~~~-~~~~~~~ 272 (305)
.+ -.|+.+.|++.++.. .+.+++.
T Consensus 409 FeA~d~~g~~v~Id~~yV~~~l~~l~~n~DLsr 441 (444)
T COG1220 409 FEAPDMSGQKVTIDAEYVEEKLGDLVANEDLSR 441 (444)
T ss_pred ccCCcCCCCeEEEcHHHHHHHHHHHhcccchhh
Confidence 11 128888888777432 3334443
No 246
>PF14516 AAA_35: AAA-like domain
Probab=99.01 E-value=3e-07 Score=79.70 Aligned_cols=231 Identities=13% Similarity=0.171 Sum_probs=136.2
Q ss_pred cccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc---ChhHHHH-HHHHhhh
Q 021937 55 VAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---GIDVVRQ-QIQDFAS 130 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~i~~~~~ 130 (305)
++.++.+-+.+.+.+... +..+.|.||..+|||+++..+.+.+...++...++.+...... ..+.... .......
T Consensus 13 Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~ 91 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISR 91 (331)
T ss_pred ccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHH
Confidence 566776666666666552 2458999999999999999999999877776666666554321 2222111 1111111
Q ss_pred ccccc-------------------------CCCCCceEEEEEeCCCcCCH--HHHHHHHHHHHH----hc-----CCceE
Q 021937 131 TQSFS-------------------------FGVKASVKLVLLDEADAMTK--DAQFALRRVIEK----YT-----KNTRF 174 (305)
Q Consensus 131 ~~~~~-------------------------~~~~~~~~vliiDe~~~l~~--~~~~~l~~~l~~----~~-----~~~~i 174 (305)
..... .....++-||+|||+|.+.. .....|+..+.. .. .+..+
T Consensus 92 ~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~l 171 (331)
T PF14516_consen 92 QLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRL 171 (331)
T ss_pred HcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEE
Confidence 11000 01125678999999999875 333445555442 11 23445
Q ss_pred EEEecCCcccchhhh----cceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhhcc
Q 021937 175 ALICNQVNKIIPALQ----SRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS 250 (305)
Q Consensus 175 il~~~~~~~l~~~l~----~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 250 (305)
+++............ +-+..+.+++++.+|+..+++.+ +..++...++.|...++|.|--....|..++.
T Consensus 172 i~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~-- 245 (331)
T PF14516_consen 172 ILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE-- 245 (331)
T ss_pred EEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 555432222222211 22456899999999998877655 67788888999999999999777777776665
Q ss_pred CccCHHHHH-hhhCC--CChhhHHHHHHHHHcccHHHHHHHHHHHHH
Q 021937 251 QQITEEAVY-LCTGN--PLPKDIEQISYWLLNESFADSFKRIQNLSF 294 (305)
Q Consensus 251 ~~i~~~~v~-~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 294 (305)
+.++.+.+- ++... .....+..+...+. .+ .+....++.+..
T Consensus 246 ~~~~~~~l~~~a~~~~~~~~~hL~~l~~~L~-~~-~~L~~~~~~il~ 290 (331)
T PF14516_consen 246 EQITLEQLLEEAITDNGIYNDHLDRLLDRLQ-QN-PELLEAYQQILF 290 (331)
T ss_pred ccCcHHHHHHHHHHhcccHHHHHHHHHHHHc-cC-HHHHHHHHHHHh
Confidence 344444332 22211 22335555555552 22 355555555544
No 247
>PRK06921 hypothetical protein; Provisional
Probab=99.00 E-value=3.5e-09 Score=88.59 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCC-CCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCc
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADA 152 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~ 152 (305)
..+++|+|++|+|||+|+.++++.+... +....++. ... ....+...+........ .-....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~--~~~--l~~~l~~~~~~~~~~~~----~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP--FVE--GFGDLKDDFDLLEAKLN----RMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE--HHH--HHHHHHHHHHHHHHHHH----HhcCCCEEEEecccc
Confidence 4569999999999999999999998655 44433333 211 11122221111110000 001258999999944
Q ss_pred -------CCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021937 153 -------MTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 153 -------l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
...-....|+.+++.... ...+|+++|..
T Consensus 189 ~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 189 PVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred ccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344456778999986543 45677787654
No 248
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.00 E-value=2.6e-08 Score=85.95 Aligned_cols=163 Identities=12% Similarity=0.063 Sum_probs=102.2
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe--------------------
Q 021937 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL-------------------- 110 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~-------------------- 110 (305)
.|..++|++.+...|.-..-.-....++|.|+.|+||||++++++..+.....-. -..+
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCCChhhhhHHHHhhccc
Confidence 3577899999988877665555556699999999999999999999873211000 0000
Q ss_pred --------------ecCCCcChh------HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh--
Q 021937 111 --------------NASDDRGID------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-- 168 (305)
Q Consensus 111 --------------~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-- 168 (305)
+.+.....+ ++...+..-.....++.-.+++++|++|||+..|....+..|++.+...
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 111101111 1111222211111222335688999999999999999999999999864
Q ss_pred -----------cCCceEEEEecCC-cccchhhhcce-eEEEecCCC-HHHHHHHHHHHHH
Q 021937 169 -----------TKNTRFALICNQV-NKIIPALQSRC-TRFRFAPLE-PVHVTERLKHVIE 214 (305)
Q Consensus 169 -----------~~~~~iil~~~~~-~~l~~~l~~r~-~~i~~~~~~-~~~~~~~l~~~~~ 214 (305)
+.+..+|.++|.. ..+-+.|+.|| ..+...++. .++..+++.+...
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 2334444455543 36889999997 555555554 4666666666554
No 249
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.99 E-value=6.6e-08 Score=78.94 Aligned_cols=125 Identities=20% Similarity=0.299 Sum_probs=85.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 156 (305)
-.++||+|+|||.+++.+++.+ ...++.+++....+...+.+.+..+... +..+++||+++++.+
T Consensus 35 ~~~~GpagtGKtetik~La~~l-----G~~~~vfnc~~~~~~~~l~ril~G~~~~----------GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL-----GRFVVVFNCSEQMDYQSLSRILKGLAQS----------GAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT-----T--EEEEETTSSS-HHHHHHHHHHHHHH----------T-EEEEETCCCSSHH
T ss_pred CCCcCCCCCCchhHHHHHHHHh-----CCeEEEecccccccHHHHHHHHHHHhhc----------CchhhhhhhhhhhHH
Confidence 5789999999999999999987 6688899999988888888888777664 579999999999988
Q ss_pred HHHHHHHHHHH-------h-------------cCCceEEEEec----CCcccchhhhcceeEEEecCCCHHHHHHHHHHH
Q 021937 157 AQFALRRVIEK-------Y-------------TKNTRFALICN----QVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212 (305)
Q Consensus 157 ~~~~l~~~l~~-------~-------------~~~~~iil~~~----~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 212 (305)
....+.+.+.. . .++..+.++.| ....+++.++.-++.+.+..|+...+.+++
T Consensus 100 vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~--- 176 (231)
T PF12774_consen 100 VLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAEIL--- 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHH---
Confidence 76655444432 1 12344555554 235788999999999999999887776655
Q ss_pred HHHcCCC
Q 021937 213 IEAEGLD 219 (305)
Q Consensus 213 ~~~~~~~ 219 (305)
+...|+.
T Consensus 177 L~s~GF~ 183 (231)
T PF12774_consen 177 LLSQGFK 183 (231)
T ss_dssp HHCCCTS
T ss_pred HHHcCch
Confidence 4455654
No 250
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.98 E-value=2.5e-08 Score=85.54 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=62.9
Q ss_pred CCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEecCC-------cccchhhhcceeEEEecCC
Q 021937 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICNQV-------NKIIPALQSRCTRFRFAPL 200 (305)
Q Consensus 139 ~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~~~-------~~l~~~l~~r~~~i~~~~~ 200 (305)
+++++++-++|+.+...+.+..|+.++++.. .+..||.++|.. .+..+++.+||..+.++.+
T Consensus 234 ~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~ 313 (361)
T smart00763 234 RANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYC 313 (361)
T ss_pred cccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCc
Confidence 4677899999999999999999999998632 123345555544 2567899999988888766
Q ss_pred CH-HHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q 021937 201 EP-VHVTERLKHVIEAE---GLDVTEGGLAALVR 230 (305)
Q Consensus 201 ~~-~~~~~~l~~~~~~~---~~~~~~~~~~~l~~ 230 (305)
.. ++-.++.++.+... +..+.+..++.++.
T Consensus 314 l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 314 LRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred CCHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 54 55566666665533 34455555544443
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.97 E-value=1.6e-09 Score=85.18 Aligned_cols=98 Identities=22% Similarity=0.334 Sum_probs=59.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC-----CCcChhHHHHHHHHhhhcccccCCCCCceEEEEE
Q 021937 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS-----DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLL 147 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vlii 147 (305)
...+++|+||+|+|||+++.++++++...++...++....- .........+.+..+ .+..+|||
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-----------~~~dlLil 114 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL-----------KRVDLLIL 114 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-----------HTSSCEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc-----------ccccEecc
Confidence 34569999999999999999999988776665555543210 000001111122222 12579999
Q ss_pred eCCCcCC--HHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 148 DEADAMT--KDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 148 De~~~l~--~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
||+.... ....+.|+++++....+...|++||..
T Consensus 115 DDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 115 DDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp ETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred cccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 9987654 445677899998655456778888754
No 252
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-08 Score=85.51 Aligned_cols=170 Identities=25% Similarity=0.345 Sum_probs=108.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC----hhHHHHHHHHhhhcccccCCCCCceEEEEEeCC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG----IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~ 150 (305)
.++++.||+|+|||.+++.+|+.+ ..++.-.+|..... -+++...+..+...+.+.- .++..++++|||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nV-ekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNV-EKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCH-HHHhcCeEEEehh
Confidence 459999999999999999999998 55566556554221 1233444444443333221 3445789999999
Q ss_pred CcCC--------------HHHHHHHHHHHHHh----c--------C-------CceEEEEec------------------
Q 021937 151 DAMT--------------KDAQFALRRVIEKY----T--------K-------NTRFALICN------------------ 179 (305)
Q Consensus 151 ~~l~--------------~~~~~~l~~~l~~~----~--------~-------~~~iil~~~------------------ 179 (305)
|++. +..|+.|+++++.. + . ...|++++.
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~s 380 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKS 380 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchh
Confidence 9985 23588999999831 1 0 112333320
Q ss_pred -----C----------C-------------------------cccchhhhcce-eEEEecCCCHHHHHHHHHH-------
Q 021937 180 -----Q----------V-------------------------NKIIPALQSRC-TRFRFAPLEPVHVTERLKH------- 211 (305)
Q Consensus 180 -----~----------~-------------------------~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~------- 211 (305)
. . .-+.|.+.-|+ .++.|.+++.+++..++..
T Consensus 381 lGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~ 460 (564)
T KOG0745|consen 381 LGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGK 460 (564)
T ss_pred cccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHH
Confidence 0 0 01245666676 5588999999998877643
Q ss_pred ----HHHHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHHhhcc
Q 021937 212 ----VIEAEGL--DVTEGGLAALVRLC---NGDMRKALNILQSTHMAS 250 (305)
Q Consensus 212 ----~~~~~~~--~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~~~ 250 (305)
.+...++ .+++++++.|++.+ +--.|.+..+++++...+
T Consensus 461 Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea 508 (564)
T KOG0745|consen 461 QYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEA 508 (564)
T ss_pred HHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence 1112233 57899999999876 334777777887777643
No 253
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.96 E-value=2.3e-08 Score=100.33 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=110.8
Q ss_pred CCCccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe---ecCC--C-----c
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL---NASD--D-----R 116 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~---~~~~--~-----~ 116 (305)
+..+++++|.+..++.+..++.-. ....+.|+|++|+||||+|+++++.+........++.- .... . .
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccccc
Confidence 346788999999999999887633 33348899999999999999999887543222122210 0000 0 0
Q ss_pred C----hhHHHHHHHHhhhccc--------ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021937 117 G----IDVVRQQIQDFASTQS--------FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (305)
Q Consensus 117 ~----~~~~~~~i~~~~~~~~--------~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l 184 (305)
. .....+.+........ .......++.+|++||++.. .+.+.+....+......+||++|.+...+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 0 0001111111111110 00112345779999998753 34445544333334456788888764332
Q ss_pred chhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Q 021937 185 IPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVT--EGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 185 ~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~~~~~l 243 (305)
... .-..++.++.++.++..+++...+.+....-+ .+....++++|+|-|-.+.-+-
T Consensus 338 ~~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlg 396 (1153)
T PLN03210 338 RAH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLG 396 (1153)
T ss_pred Hhc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 111 01256888899999999999888764432211 2346678899999776554433
No 254
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.95 E-value=1.2e-07 Score=88.21 Aligned_cols=186 Identities=17% Similarity=0.204 Sum_probs=122.0
Q ss_pred cCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH
Q 021937 47 YRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ 126 (305)
Q Consensus 47 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (305)
.+|....+.+-++.....|.+.. ....++|+-|+|.||||++-.++. ...++...-++.++..+......+...+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~~---~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRAN---DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCCCcccccccHHHHHHHhcCC---CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHH
Confidence 35556677777776665554332 334489999999999999999987 44556666677777666543333333332
Q ss_pred Hhhhccc-cc-------------------------CCCCCceEEEEEeCCCcCCHHH-HHHHHHHHHHhcCCceEEEEec
Q 021937 127 DFASTQS-FS-------------------------FGVKASVKLVLLDEADAMTKDA-QFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 127 ~~~~~~~-~~-------------------------~~~~~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~iil~~~ 179 (305)
......+ .. -..-.++..++|||.|.++... ...+..+++..|.+..++++|.
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 2221111 00 0122447899999999998655 5567778888899999999986
Q ss_pred CCcc-cchhhhcceeEEEec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 021937 180 QVNK-IIPALQSRCTRFRFA----PLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKA 239 (305)
Q Consensus 180 ~~~~-l~~~l~~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~ 239 (305)
.... ....++-|...+.+. .++.+|..+++.... +..++...++.|.+.+.|-+-.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~~~~L~~~teGW~~al 230 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SLPLDAADLKALYDRTEGWAAAL 230 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CCCCChHHHHHHHhhcccHHHHH
Confidence 5443 234444443333222 357888888887652 47899999999999999965443
No 255
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.95 E-value=3.6e-08 Score=93.38 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=84.6
Q ss_pred ccccchHHHHHHHHHHhcCC---------------------CCeEEEECCCCCcHHHHHHHHHHHHhCCCC--cccEEEe
Q 021937 54 DVAAHRDIVDTIDRLTSENR---------------------LPHLLLYGPPGTGKTSTILAVARKLYGAQY--HNMILEL 110 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~---------------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~ 110 (305)
.+.|++.++..+.-.+-++. ..+++|+|+||+|||.+++.+++......+ ...+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 56788888876665554332 116999999999999999999885321110 0111111
Q ss_pred ecCCCcChhHHHHHHHHhhhccc--ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-------------CCceEE
Q 021937 111 NASDDRGIDVVRQQIQDFASTQS--FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFA 175 (305)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------------~~~~ii 175 (305)
.+... .. .......... .+.-..+.+++++|||++.++...+..|++++++.. ..+.+|
T Consensus 531 gLTa~----~~--~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVI 604 (915)
T PTZ00111 531 GLTAS----IK--FNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAIL 604 (915)
T ss_pred cccch----hh--hcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEE
Confidence 11110 00 0000000000 001123456899999999999999999999998542 456677
Q ss_pred EEecCC-------------cccchhhhcceeE--EEecCCCHH
Q 021937 176 LICNQV-------------NKIIPALQSRCTR--FRFAPLEPV 203 (305)
Q Consensus 176 l~~~~~-------------~~l~~~l~~r~~~--i~~~~~~~~ 203 (305)
.++|.. -.+++++.+||.. +.++.++.+
T Consensus 605 AAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 605 ASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred EEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChH
Confidence 777542 2467889999832 334445443
No 256
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.5e-09 Score=93.94 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=105.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC------CcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD------DRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA 150 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~ 150 (305)
++||||||||||.+|+.+..-++...... +|++. ....+.++.++.++..... ..+..+.-.+||+||+
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKI----VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r-~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKI----VNGPEILNKYVGESEENVRKLFADAEEEQR-RLGANSGLHIIIFDEI 333 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCcc----cCcHHHHHHhhcccHHHHHHHHHhHHHHHH-hhCccCCceEEEehhh
Confidence 89999999999999999999986654322 23322 2344556666665543322 1233445689999999
Q ss_pred CcCCH-------------HHHHHHHHHHHHh--cCCceEEEEecCCcccchhhhcce---eEEEecCCCHHHHHHHHHHH
Q 021937 151 DAMTK-------------DAQFALRRVIEKY--TKNTRFALICNQVNKIIPALQSRC---TRFRFAPLEPVHVTERLKHV 212 (305)
Q Consensus 151 ~~l~~-------------~~~~~l~~~l~~~--~~~~~iil~~~~~~~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~ 212 (305)
|.+.+ ...+.|+.-++.. -.+..+|..||+.+-+++++.+-. ...++.-|++.-+.++++..
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 98853 2456677666632 236677778899999999998754 34677778888777776655
Q ss_pred HHHc--CCCCCHH-HHHHHHHHc----CCCHHHHHHHHHHHhh
Q 021937 213 IEAE--GLDVTEG-GLAALVRLC----NGDMRKALNILQSTHM 248 (305)
Q Consensus 213 ~~~~--~~~~~~~-~~~~l~~~~----~g~~r~~~~~l~~~~~ 248 (305)
..+. +-.++.+ .++.|+..+ +.-+.-++...++.+.
T Consensus 414 T~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~ 456 (744)
T KOG0741|consen 414 TKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAM 456 (744)
T ss_pred hhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 5432 2233332 356666655 2334444444444443
No 257
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.94 E-value=1.4e-08 Score=79.66 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=105.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCC-cccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCC----C
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQY-HNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEA----D 151 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~----~ 151 (305)
++++|..-.-+...++.+.+.+...+. ...+..++.... ...+ +.......++.++ +.+|+|.++ +
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~-l~~~~~s~slF~~----~klvii~~~~~l~~ 71 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSED----DIDE-LLEELQSPSLFGD----KKLVIIKNAPFLKD 71 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-----HHH--HTTTSTTTTSSSS----EEEEEEE-----TT
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccC----cHHH-HHHHHhcCCccCC----CeEEEEecCccccc
Confidence 578888877777777777777443332 223333333321 1112 3333344443333 899999998 4
Q ss_pred cCCHHHHHHHHHHHHHhcCCceEEEEec-CCc---ccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 021937 152 AMTKDAQFALRRVIEKYTKNTRFALICN-QVN---KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAA 227 (305)
Q Consensus 152 ~l~~~~~~~l~~~l~~~~~~~~iil~~~-~~~---~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (305)
.........|..++..++.++.+++.+. ..+ .+.+.+...+.++.+.++...++..|+...+.+.|..+++++++.
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~ 151 (172)
T PF06144_consen 72 KLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQY 151 (172)
T ss_dssp -S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4566778889999998888888888877 333 345666777889999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHh
Q 021937 228 LVRLCNGDMRKALNILQSTH 247 (305)
Q Consensus 228 l~~~~~g~~r~~~~~l~~~~ 247 (305)
+++..++|++.+.+.+++++
T Consensus 152 L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 152 LIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHhc
Confidence 99999999999999999876
No 258
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.3e-07 Score=86.87 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHHHhcC---------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc--ChhHHHHH
Q 021937 56 AAHRDIVDTIDRLTSEN---------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR--GIDVVRQQ 124 (305)
Q Consensus 56 ~g~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 124 (305)
.+++..+..+...+.-. ..+.++++|+||||||+++++++.++ ...+++++|.... ........
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-----g~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-----GLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-----CCceEeccHHHHhhcccchhHHH
Confidence 34555555666665532 22348999999999999999999998 6677777775421 11111111
Q ss_pred HHHhhhcccccCCCCCceEEEEEeCCCcCCHH--------HHHHHHHHHH-H-h---cCCceEEEEecCCcccchhhhcc
Q 021937 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTKD--------AQFALRRVIE-K-Y---TKNTRFALICNQVNKIIPALQSR 191 (305)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------~~~~l~~~l~-~-~---~~~~~iil~~~~~~~l~~~l~~r 191 (305)
+... |.....+.+.||++-++|.+.-+ ....+...+. + . .+.+.++.+++..+.+++.+++-
T Consensus 479 l~~~-----f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~ 553 (953)
T KOG0736|consen 479 LQAI-----FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSL 553 (953)
T ss_pred HHHH-----HHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHh
Confidence 2211 11223345789999988877522 1233333333 1 1 12445666678888899999888
Q ss_pred e-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Q 021937 192 C-TRFRFAPLEPVHVTERLKHVIEAEGLDVTEG-GLAALVRLCNG 234 (305)
Q Consensus 192 ~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g 234 (305)
+ ..+.++.++++++.++++-+..... ++++ ....+++.++|
T Consensus 554 f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 554 FLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSG 596 (953)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCC
Confidence 7 7799999999999999999887554 4433 34567777765
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.93 E-value=5.3e-09 Score=89.15 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=72.6
Q ss_pred cCCCCcccccc----chHHHHHHHHHHhcC----CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh
Q 021937 47 YRPQSLADVAA----HRDIVDTIDRLTSEN----RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 118 (305)
Q Consensus 47 ~~p~~~~~~~g----~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (305)
+...+|+++.. +.........++... ...+++|+||+|+|||+++.++++++...++...++.+.. -.
T Consensus 121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~----l~ 196 (306)
T PRK08939 121 LLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE----FI 196 (306)
T ss_pred HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH----HH
Confidence 33456666653 333444445555432 3456999999999999999999999977666655555421 11
Q ss_pred hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCC--HHHHHHH-HHHHHHh-cCCceEEEEecCC
Q 021937 119 DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMT--KDAQFAL-RRVIEKY-TKNTRFALICNQV 181 (305)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~--~~~~~~l-~~~l~~~-~~~~~iil~~~~~ 181 (305)
..+...+..-...... ..-.+..||+|||+..-. .-....+ ..+++.. ......+++||..
T Consensus 197 ~~lk~~~~~~~~~~~l--~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 197 RELKNSISDGSVKEKI--DAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHHHhcCcHHHHH--HHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1111111100000000 001126899999987654 3334334 4455644 4567788888764
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.92 E-value=2.1e-08 Score=86.17 Aligned_cols=133 Identities=18% Similarity=0.279 Sum_probs=75.8
Q ss_pred HHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc--cc-
Q 021937 61 IVDTIDRLTSE--NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS--FS- 135 (305)
Q Consensus 61 ~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~- 135 (305)
+++....++.. ....+++|+||+|+|||+|+.++++++...+..+.++. ... +...+........ ..
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t--~~~------l~~~l~~~~~~~~~~~~~ 239 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT--ADE------LIEILREIRFNNDKELEE 239 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE--HHH------HHHHHHHHHhccchhHHH
Confidence 33444445553 12256999999999999999999999976665443333 221 1111111000000 00
Q ss_pred -CCCCCceEEEEEeCCCcC--CHHHHHHHHHHHHHhcC-CceEEEEecCCcc-----cchhhhcc----eeEEEecCCC
Q 021937 136 -FGVKASVKLVLLDEADAM--TKDAQFALRRVIEKYTK-NTRFALICNQVNK-----IIPALQSR----CTRFRFAPLE 201 (305)
Q Consensus 136 -~~~~~~~~vliiDe~~~l--~~~~~~~l~~~l~~~~~-~~~iil~~~~~~~-----l~~~l~~r----~~~i~~~~~~ 201 (305)
...-....+|||||++.. .......|+.+++.... ...+|++||.... +.+.+.+| +.++.|...+
T Consensus 240 ~~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 240 VYDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred HHHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 000012589999999655 45667889999986543 4567788875432 23445555 3456665443
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.91 E-value=3.8e-09 Score=78.99 Aligned_cols=104 Identities=27% Similarity=0.371 Sum_probs=63.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCC---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCC-------------C
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG-------------V 138 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------~ 138 (305)
..++++||+|+|||++++.+++.+.... ....++.++++.......+.+.+............ .
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 3489999999999999999999874210 03345555555444444444444443333221100 1
Q ss_pred CCceEEEEEeCCCcC-CHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 139 KASVKLVLLDEADAM-TKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 139 ~~~~~vliiDe~~~l-~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
..+..+|+|||+|.+ ..+..+.|..+.+ ..+..++++++.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 122369999999999 7666677766666 446677777754
No 262
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=3.7e-08 Score=74.20 Aligned_cols=95 Identities=26% Similarity=0.288 Sum_probs=56.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC--------------------hhHHHHHHHHhhhcccc
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--------------------IDVVRQQIQDFASTQSF 134 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~~~~~~~~ 134 (305)
.+++|+||+|+|||++++.++..+..... .++.++...... .......+..+ ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA-RK--- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCC--CEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH-Hh---
Confidence 46899999999999999999999855431 244444332111 11111111111 11
Q ss_pred cCCCCCceEEEEEeCCCcCCHHHHHHHHH--------HHHHhcCCceEEEEecC
Q 021937 135 SFGVKASVKLVLLDEADAMTKDAQFALRR--------VIEKYTKNTRFALICNQ 180 (305)
Q Consensus 135 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~--------~l~~~~~~~~iil~~~~ 180 (305)
.++.+|++||++.+.......... ..........++++++.
T Consensus 77 -----~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 -----LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -----cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 114899999999998665544332 22334446667777774
No 263
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.90 E-value=5.9e-08 Score=87.62 Aligned_cols=149 Identities=21% Similarity=0.184 Sum_probs=89.4
Q ss_pred CCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC----------------
Q 021937 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS---------------- 113 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---------------- 113 (305)
..|..+.|+...++.+.-.+..+ .++++.||+|+|||++++.+...+..... ...++...-
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhccccccCCcCCC
Confidence 37888899988888765555443 56999999999999999999876532111 111111100
Q ss_pred CCcCh---hHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------------cCCceEEEE
Q 021937 114 DDRGI---DVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALI 177 (305)
Q Consensus 114 ~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~iil~ 177 (305)
..... ......+..- .......-..++++++|+||++.+....++.|++.+++. +.+..+|.+
T Consensus 265 Pfr~ph~~~s~~~l~GGg-~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGG-AIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred CccCCCccchHHHHhCCC-ceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 00000 0000011000 000011113456789999999999999999999999753 334566666
Q ss_pred ecCCc---------------------ccchhhhcce-eEEEecCCCH
Q 021937 178 CNQVN---------------------KIIPALQSRC-TRFRFAPLEP 202 (305)
Q Consensus 178 ~~~~~---------------------~l~~~l~~r~-~~i~~~~~~~ 202 (305)
+|... ++...+.+|| ..+.+++++.
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 65432 3556788888 4477777643
No 264
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.89 E-value=1e-07 Score=87.94 Aligned_cols=187 Identities=15% Similarity=0.139 Sum_probs=116.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC----cChhHHHHHHHHhhhcccccCCCCCceEEEEEe
Q 021937 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiD 148 (305)
....++|.|+.|+|||++++.+...+.. ...|+.+..... .+--++...+..-........-..++++|||||
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lD 100 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLA 100 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEec
Confidence 4456999999999999999999988732 123433322211 122223333332221111222245667999999
Q ss_pred CCCcCCHHHHHHHHHHHHHhcC-----------CceEEEEecCC-----cccchhhhcce-eEEEecCCCHHHHH-----
Q 021937 149 EADAMTKDAQFALRRVIEKYTK-----------NTRFALICNQV-----NKIIPALQSRC-TRFRFAPLEPVHVT----- 206 (305)
Q Consensus 149 e~~~l~~~~~~~l~~~l~~~~~-----------~~~iil~~~~~-----~~l~~~l~~r~-~~i~~~~~~~~~~~----- 206 (305)
|+..+.+..++.|++.+++... ...|++++... ..+.+.+..|| ..+.+..++..+..
T Consensus 101 e~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~ 180 (584)
T PRK13406 101 MAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPID 180 (584)
T ss_pred CcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCC
Confidence 9999999999999999996421 12344443222 34788899998 66788877755432
Q ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHcC--C--CHHHHHHHHHHHhh-----ccCccCHHHHHhhh
Q 021937 207 --ERLKHVIEAEGLDVTEGGLAALVRLCN--G--DMRKALNILQSTHM-----ASQQITEEAVYLCT 262 (305)
Q Consensus 207 --~~l~~~~~~~~~~~~~~~~~~l~~~~~--g--~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 262 (305)
.+...+..-.++.++++.++++++.+. | ..|..+..++.+.. ....++.++|.+++
T Consensus 181 ~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa 247 (584)
T PRK13406 181 ADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAA 247 (584)
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 222222222478899999888877552 2 56766666643332 33569999998776
No 265
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.89 E-value=7.9e-09 Score=86.70 Aligned_cols=139 Identities=18% Similarity=0.244 Sum_probs=81.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc--ccCCCCCceEEEEEeCCCc
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS--FSFGVKASVKLVLLDEADA 152 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~vliiDe~~~ 152 (305)
.+++|+||+|||||.+++.+.+.+... ......++.+.......+...++....... ..++...++.|++|||++.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~--~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSD--KYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTC--CEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-
T ss_pred CcEEEECCCCCchhHHHHhhhccCCcc--ccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCC
Confidence 359999999999999999988765332 222344555443333333333322211111 1123446678999999986
Q ss_pred CCHH------HHHHHHHHHHHhc------------CCceEEEEecCC---cccchhhhcceeEEEecCCCHHHHHHHHHH
Q 021937 153 MTKD------AQFALRRVIEKYT------------KNTRFALICNQV---NKIIPALQSRCTRFRFAPLEPVHVTERLKH 211 (305)
Q Consensus 153 l~~~------~~~~l~~~l~~~~------------~~~~iil~~~~~---~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 211 (305)
-..+ ..+.|.++++... .++.++.+++.. ..+.+++.+.+.++.++.|+.+.+..+...
T Consensus 112 p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~ 191 (272)
T PF12775_consen 112 PQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESLNTIFSS 191 (272)
T ss_dssp S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHHHHHHHH
Confidence 6533 3566777777421 244555555432 247888999999999999999998888877
Q ss_pred HHHH
Q 021937 212 VIEA 215 (305)
Q Consensus 212 ~~~~ 215 (305)
.+..
T Consensus 192 il~~ 195 (272)
T PF12775_consen 192 ILQS 195 (272)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7654
No 266
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-08 Score=89.44 Aligned_cols=116 Identities=19% Similarity=0.146 Sum_probs=70.2
Q ss_pred CCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCC-----------------Cc-ccEEEee
Q 021937 50 QSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-----------------YH-NMILELN 111 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----------------~~-~~~~~~~ 111 (305)
..|.+++||+..+..+.-...++ ++++++||||||||.++..+...+-.-. .. ..++..-
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGg--HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~r 253 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGG--HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHR 253 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcC--CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeC
Confidence 37899999999999999888877 4699999999999999999876541100 00 0000000
Q ss_pred cCCC-cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh
Q 021937 112 ASDD-RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (305)
Q Consensus 112 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~ 168 (305)
.... .-.......+... .......-..++.+|+||||+-.+.....+.|..-+|+.
T Consensus 254 PFr~PHHsaS~~aLvGGG-~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 254 PFRAPHHSASLAALVGGG-GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred CccCCCccchHHHHhCCC-CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccC
Confidence 0000 0000011111111 111111113467889999999999988888888877753
No 267
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.4e-08 Score=84.42 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHhc-CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCC
Q 021937 59 RDIVDTIDRLTSE-NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG 137 (305)
Q Consensus 59 ~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (305)
...+..+...... ....+++|+||||+|||+++.++++++...+..+.++.+. + ....+.+..........+ ..
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~--e--l~~~Lk~~~~~~~~~~~l-~~ 163 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP--D--LLSKLKAAFDEGRLEEKL-LR 163 (254)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH--H--HHHHHHHHHhcCchHHHH-HH
Confidence 3444444443322 2445699999999999999999999997555555555432 1 111222211110000000 00
Q ss_pred CCCceEEEEEeCCCcCC--HHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 138 VKASVKLVLLDEADAMT--KDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 138 ~~~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.-.+..||||||+.... ......++++|.........++++|...
T Consensus 164 ~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 164 ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 01336899999988754 4456778887776544444477776543
No 268
>PRK09183 transposase/IS protein; Provisional
Probab=98.83 E-value=2.8e-08 Score=82.97 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=59.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccc---cCCCCCceEEEEEeCC
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSF---SFGVKASVKLVLLDEA 150 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~vliiDe~ 150 (305)
..+++|+||+|+|||+++.+++......++...++. .. .+...+......... .........+++|||+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~--~~------~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdl 173 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT--AA------DLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEI 173 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe--HH------HHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEccc
Confidence 346999999999999999999888655554443332 11 111111110000000 0000112579999999
Q ss_pred CcC--CHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 151 DAM--TKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 151 ~~l--~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
+.. .....+.|+++++....+..+|+++|..
T Consensus 174 g~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 174 GYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 875 4556668999998655455678887654
No 269
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.81 E-value=1.1e-08 Score=81.11 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=33.9
Q ss_pred ccccchHHHHHHHHHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHhCC
Q 021937 54 DVAAHRDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
+|+|+++.++++...+. .+.++.++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999993 2344559999999999999999999888654
No 270
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.8e-07 Score=80.53 Aligned_cols=154 Identities=16% Similarity=0.292 Sum_probs=94.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc-C------hhHHHHHHHHhhhcccccCCCCCceEEEEEe
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR-G------IDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~i~~~~~~~~~~~~~~~~~~vliiD 148 (305)
.++|.||||+|||+||..++..- .++|+.+-.++.. + ...+...+.++ .+++-.+|++|
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA---------YkS~lsiivvD 605 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLSESAKCAHIKKIFEDA---------YKSPLSIIVVD 605 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCccHHHHHHHHHHHHHHh---------hcCcceEEEEc
Confidence 38999999999999999999864 5677777665421 1 11223333333 33446899999
Q ss_pred CCCcCC----------HHHHHHHHHHHHHhcCC--ceEEEEecCCcccchhh--hcce-eEEEecCCCH-HHHHHHHHHH
Q 021937 149 EADAMT----------KDAQFALRRVIEKYTKN--TRFALICNQVNKIIPAL--QSRC-TRFRFAPLEP-VHVTERLKHV 212 (305)
Q Consensus 149 e~~~l~----------~~~~~~l~~~l~~~~~~--~~iil~~~~~~~l~~~l--~~r~-~~i~~~~~~~-~~~~~~l~~~ 212 (305)
|++++. .-..+.|+-++.+.|++ ..+|++|++.......+ ..-| ..++++.++. ++..+++...
T Consensus 606 diErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 606 DIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred chhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 998873 23456677777766655 34555555443333322 2223 5578888776 6777766553
Q ss_pred HHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHhh
Q 021937 213 IEAEGLDVTEGGLAALVRLCNG-----DMRKALNILQSTHM 248 (305)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~~~g-----~~r~~~~~l~~~~~ 248 (305)
+. ++++..+.+++.-.+ -+.+++.+++.+..
T Consensus 686 ----n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 686 ----NI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred ----cC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 43 555556655554433 25666666666554
No 271
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.76 E-value=2.2e-06 Score=74.41 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=53.4
Q ss_pred CceEEEEEeCCCcCCHHHHHHHHHHHHHhc--CCceEEEEecCCc---------------ccchhhhcce--eEEEecCC
Q 021937 140 ASVKLVLLDEADAMTKDAQFALRRVIEKYT--KNTRFALICNQVN---------------KIIPALQSRC--TRFRFAPL 200 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~--~~~~iil~~~~~~---------------~l~~~l~~r~--~~i~~~~~ 200 (305)
.++.||+|||+|++.++....+++.+...- +++.+|++.+... ........++ ..+.+|++
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~ 250 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPP 250 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCC
Confidence 557899999999999988888888777543 3667777764210 1122333343 45899999
Q ss_pred CHHHHHHHHHHHHHHc
Q 021937 201 EPVHVTERLKHVIEAE 216 (305)
Q Consensus 201 ~~~~~~~~l~~~~~~~ 216 (305)
+..++..++...+...
T Consensus 251 ~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 251 SPSDLERYLNELLESL 266 (325)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999988888775543
No 272
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.75 E-value=7.9e-07 Score=80.44 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=111.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc---------CCCCCceEEEEE
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS---------FGVKASVKLVLL 147 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~vlii 147 (305)
+++.|.+|+||-.+++++...-. ....++.+||.... ...+.+.+..+.... |. .......+.+|+
T Consensus 339 vll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAip-~~liesELFGy~~Ga-fTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 339 VLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAIP-EALIESELFGYVAGA-FTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred eEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccch-HHhhhHHHhccCccc-cccchhccccccceecCCCccHH
Confidence 99999999999999999988753 45578888887632 112222222111110 11 113456789999
Q ss_pred eCCCcCCHHHHHHHHHHHHHhc----------CCceEEEEecCC-------cccchhhhcce--eEEEecCCCHH-HHHH
Q 021937 148 DEADAMTKDAQFALRRVIEKYT----------KNTRFALICNQV-------NKIIPALQSRC--TRFRFAPLEPV-HVTE 207 (305)
Q Consensus 148 De~~~l~~~~~~~l~~~l~~~~----------~~~~iil~~~~~-------~~l~~~l~~r~--~~i~~~~~~~~-~~~~ 207 (305)
||+..++-..|..|++.+++.. -+.++|.+|+.. ..+-+++.-|. .++.+||+... +...
T Consensus 414 deIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~ 493 (606)
T COG3284 414 DEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIP 493 (606)
T ss_pred HHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHH
Confidence 9999999999999999999642 123455444321 23455666665 45667666543 2333
Q ss_pred HHHHHHHHc---CCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHhhcc
Q 021937 208 RLKHVIEAE---GLDVTEGGLAALVRL-CNGDMRKALNILQSTHMAS 250 (305)
Q Consensus 208 ~l~~~~~~~---~~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 250 (305)
.+.++..++ ...+++++++.+..+ .+||+|.+.+.++.++...
T Consensus 494 ~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 494 LLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred HHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 344444444 467899998887764 5999999999999888744
No 273
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.4e-07 Score=89.29 Aligned_cols=116 Identities=22% Similarity=0.348 Sum_probs=81.3
Q ss_pred cccccchHHHHHHHHHHhcC-----C--CC-eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC---------
Q 021937 53 ADVAAHRDIVDTIDRLTSEN-----R--LP-HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--------- 115 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~-----~--~~-~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--------- 115 (305)
+.++||.+.+..+-..+... + +. .++|.||.|+|||.+|++++..+... ...++.++.+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhhhhhhhccCC
Confidence 46889999999888887632 1 12 28999999999999999999998543 334555555431
Q ss_pred ----cChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEec
Q 021937 116 ----RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALICN 179 (305)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~~ 179 (305)
.+....-+ +.... .+.++.||+|||++......++.|++++++.. .++.||+|+|
T Consensus 640 p~gyvG~e~gg~-Lteav--------rrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn 709 (898)
T KOG1051|consen 640 PPGYVGKEEGGQ-LTEAV--------KRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSN 709 (898)
T ss_pred CcccccchhHHH-HHHHH--------hcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecc
Confidence 11111111 11111 23447999999999999999999999999753 4667777764
No 274
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.70 E-value=2.7e-06 Score=74.19 Aligned_cols=74 Identities=9% Similarity=0.166 Sum_probs=48.1
Q ss_pred eEEEEEeCCCcCCHHHHHHHHHHHH-H---h--cCCceEEEEecCCc---ccchhhhcc-eeEEEecCCCHHHHHHHHHH
Q 021937 142 VKLVLLDEADAMTKDAQFALRRVIE-K---Y--TKNTRFALICNQVN---KIIPALQSR-CTRFRFAPLEPVHVTERLKH 211 (305)
Q Consensus 142 ~~vliiDe~~~l~~~~~~~l~~~l~-~---~--~~~~~iil~~~~~~---~l~~~l~~r-~~~i~~~~~~~~~~~~~l~~ 211 (305)
+-||+||.+..-... .+.+++.+. + . ..--.+|++|++.. .+.+++-+| +..+.+...+.+..+.++..
T Consensus 149 ~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 569999998765533 344444332 1 1 22345667665442 355666666 47789999999999999988
Q ss_pred HHHHc
Q 021937 212 VIEAE 216 (305)
Q Consensus 212 ~~~~~ 216 (305)
.+...
T Consensus 228 ~L~~~ 232 (431)
T PF10443_consen 228 QLDED 232 (431)
T ss_pred Hhccc
Confidence 87653
No 275
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.69 E-value=5.2e-07 Score=74.24 Aligned_cols=234 Identities=18% Similarity=0.188 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh-CCCCcccEEEeecCCCcChhHHHHHHHHhhhccc------
Q 021937 61 IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQS------ 133 (305)
Q Consensus 61 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------ 133 (305)
.++++.+.....+. .+++.||+|.||+.+++.+...-. .......|+++||+...+...+...+........
T Consensus 196 mieqierva~rsr~-p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r 274 (531)
T COG4650 196 MIEQIERVAIRSRA-PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESR 274 (531)
T ss_pred HHHHHHHHHhhccC-CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhh
Confidence 33444444444433 399999999999999999876432 2335678999999987776666655544322111
Q ss_pred ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-----------CCceEEEEe-cC------CcccchhhhcceeEE
Q 021937 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-----------KNTRFALIC-NQ------VNKIIPALQSRCTRF 195 (305)
Q Consensus 134 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~iil~~-~~------~~~l~~~l~~r~~~i 195 (305)
...-..+.++.+++||+..+..+.+..|++.+++.. .+..+|.-+ .+ ...+-+.+..|...+
T Consensus 275 ~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlw 354 (531)
T COG4650 275 EGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 (531)
T ss_pred hhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhhee
Confidence 011133567899999999999999999999998632 111122111 00 012334555555444
Q ss_pred EecCCCHHHHHH--------HHHHHHHHcC--CCCCHHHHHHHHHH-------cCCCHHHHHHHHHHHhhc--cCccCHH
Q 021937 196 RFAPLEPVHVTE--------RLKHVIEAEG--LDVTEGGLAALVRL-------CNGDMRKALNILQSTHMA--SQQITEE 256 (305)
Q Consensus 196 ~~~~~~~~~~~~--------~l~~~~~~~~--~~~~~~~~~~l~~~-------~~g~~r~~~~~l~~~~~~--~~~i~~~ 256 (305)
.|.-|-..+..+ -+.+.+...| +.+..++...-... ..||.|.+-..+...+.. .+.|+.+
T Consensus 355 tf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~ 434 (531)
T COG4650 355 TFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLD 434 (531)
T ss_pred eeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHH
Confidence 544443322211 1233333333 34455544332222 358999988877665543 4678888
Q ss_pred HHHhhhCCCCh---hhHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 021937 257 AVYLCTGNPLP---KDIEQISYWLLNESFADSFKRIQNLSFII 296 (305)
Q Consensus 257 ~v~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~l~~l~~~~ 296 (305)
.|+.-+.+..+ +.--.-...+++ +..+|+..++.|+.+.
T Consensus 435 ~ve~ei~rlr~~w~~~~p~~l~~llg-~~a~aldlfdrmqle~ 476 (531)
T COG4650 435 VVEDEINRLRYNWQESRPSALTALLG-AEAEALDLFDRMQLEH 476 (531)
T ss_pred HHHHHHHHHHHHhhhcCchhhhhccc-cchhhhhhHHHHHHHH
Confidence 88755432211 111112233333 3467888888887763
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=5.7e-07 Score=67.39 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=24.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
.+.++|+||+||||++..+++.+...+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 389999999999999999999987654
No 277
>PHA00729 NTP-binding motif containing protein
Probab=98.61 E-value=3.1e-07 Score=74.01 Aligned_cols=121 Identities=19% Similarity=0.245 Sum_probs=65.3
Q ss_pred HhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcc--cEEEeecC---CCcChhHHHHHHHHhhhcccccCCCCCceE
Q 021937 69 TSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHN--MILELNAS---DDRGIDVVRQQIQDFASTQSFSFGVKASVK 143 (305)
Q Consensus 69 l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 143 (305)
+..+...+++|+|+||+||||+|.++++.+....... ........ .....+.+...+...... ..+..
T Consensus 12 l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~-------~~~~d 84 (226)
T PHA00729 12 YNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN-------DYRIP 84 (226)
T ss_pred HhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc-------CCCCC
Confidence 3444455799999999999999999999863100000 00000000 001223333334332211 11236
Q ss_pred EEEEeCCCcCCHH-HHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHH
Q 021937 144 LVLLDEADAMTKD-AQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKH 211 (305)
Q Consensus 144 vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 211 (305)
+++|||+..-... .++ .+ . ......+.+.+++|+..+.|.+++.+++.+.++.
T Consensus 85 lLIIDd~G~~~~~~~wh------~~---~------~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 85 LIIFDDAGIWLSKYVWY------ED---Y------MKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred EEEEeCCchhhcccchh------hh---c------cchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 8999995433211 000 00 0 0111245677778888899999998888887766
No 278
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.58 E-value=5.9e-07 Score=71.90 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHH-------Hhhhcccc
Q 021937 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQ-------DFASTQSF 134 (305)
Q Consensus 62 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~ 134 (305)
.+.+...+.+. ....++.|++|+|||+++..+...+...+. .++.+.. .......+.+... .+......
T Consensus 7 ~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~--~v~~~ap-T~~Aa~~L~~~~~~~a~Ti~~~l~~~~~ 82 (196)
T PF13604_consen 7 REAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAGK--RVIGLAP-TNKAAKELREKTGIEAQTIHSFLYRIPN 82 (196)
T ss_dssp HHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEES-SHHHHHHHHHHHTS-EEEHHHHTTEECC
T ss_pred HHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCCC--eEEEECC-cHHHHHHHHHhhCcchhhHHHHHhcCCc
Confidence 34444444443 245789999999999999999988866543 3333332 2222333333321 11111111
Q ss_pred c----CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 135 S----FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 135 ~----~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
. .....+..+|||||+..++......|+..+.. .+.++|++++..
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 0 00123457999999999998877777776665 267888888754
No 279
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.57 E-value=1.5e-06 Score=72.91 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=92.5
Q ss_pred ccccchHHHHHH----HHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhh
Q 021937 54 DVAAHRDIVDTI----DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (305)
Q Consensus 54 ~~~g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (305)
.+.|.....+.+ ++.+..+....+++.||.|+|||.++..........+-....+.+|+.-....-.+.....++.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 456655444444 4445567777899999999999999888877744445555566666654321111222221111
Q ss_pred hc--------cccc------------CCCCCc-eEEEEEeCCCcCCHHH-HHHHHHHHHHh---cCCceEEEEecCCc--
Q 021937 130 ST--------QSFS------------FGVKAS-VKLVLLDEADAMTKDA-QFALRRVIEKY---TKNTRFALICNQVN-- 182 (305)
Q Consensus 130 ~~--------~~~~------------~~~~~~-~~vliiDe~~~l~~~~-~~~l~~~l~~~---~~~~~iil~~~~~~-- 182 (305)
.. .++. +....+ +-+.|+||+|...+.. |-.|+++++-. .....++.+|.+.+
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 10 1111 112222 3456667899886544 55677777732 23345555555543
Q ss_pred -ccchhhhcce--eEEE-ecCCCHHHHHHHHHHHH
Q 021937 183 -KIIPALQSRC--TRFR-FAPLEPVHVTERLKHVI 213 (305)
Q Consensus 183 -~l~~~l~~r~--~~i~-~~~~~~~~~~~~l~~~~ 213 (305)
.+.+..++|| +++. +++.+.++...+++..+
T Consensus 185 E~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 185 ELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5678888998 3344 45556778877777765
No 280
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.57 E-value=1.6e-06 Score=78.79 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=82.9
Q ss_pred ccccchHHHHHHHHHHhcCC---------C---CeEEEECCCCCcHHHHHHHHHHHHhCC----CCcccEEEeecCCCcC
Q 021937 54 DVAAHRDIVDTIDRLTSENR---------L---PHLLLYGPPGTGKTSTILAVARKLYGA----QYHNMILELNASDDRG 117 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~---------~---~~~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~ 117 (305)
++.|++..++.|.-.+-++. . -+++|+|.||+|||.+++.+++..... |.....+.++..-...
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 45566666665544443321 1 249999999999999999999876321 1111111111100000
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------------cCCceEEEEecCC---
Q 021937 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQV--- 181 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~iil~~~~~--- 181 (305)
. .-++.+.+. +.-.-+..++-.|||+|+++...+..|++.++.. ++.+.++.++|..
T Consensus 510 ~-dtkqlVLes------GALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~sk 582 (804)
T KOG0478|consen 510 P-DTRQLVLES------GALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSK 582 (804)
T ss_pred C-ccceeeeec------CcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeecccccc
Confidence 0 000111000 0001233689999999999999999999999853 3455666666522
Q ss_pred ----------cccchhhhcceeE--EEecCCCHH
Q 021937 182 ----------NKIIPALQSRCTR--FRFAPLEPV 203 (305)
Q Consensus 182 ----------~~l~~~l~~r~~~--i~~~~~~~~ 203 (305)
-.++++|.+||.. +-+.++++.
T Consensus 583 ynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 583 YNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred CCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 1468999999944 456666655
No 281
>PHA02774 E1; Provisional
Probab=98.51 E-value=2.9e-06 Score=76.88 Aligned_cols=138 Identities=22% Similarity=0.265 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCC-CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCC
Q 021937 60 DIVDTIDRLTSENRL-PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGV 138 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (305)
..+..|+.++.+.+. ..++|+||||+|||+++..+++.+. + ..+..+|...... +..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~--G--~vi~fvN~~s~Fw-------Lqp----------- 476 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK--G--KVISFVNSKSHFW-------LQP----------- 476 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC--C--CEEEEEECccccc-------cch-----------
Confidence 456677788766543 3499999999999999999999983 1 1222234321111 111
Q ss_pred CCceEEEEEeCCCcCC-HHHHHHHHHHHHHhc-------------CCceEEEEecCCc---ccchhhhcceeEEEecC--
Q 021937 139 KASVKLVLLDEADAMT-KDAQFALRRVIEKYT-------------KNTRFALICNQVN---KIIPALQSRCTRFRFAP-- 199 (305)
Q Consensus 139 ~~~~~vliiDe~~~l~-~~~~~~l~~~l~~~~-------------~~~~iil~~~~~~---~l~~~l~~r~~~i~~~~-- 199 (305)
-....++++||+-.-. .-....|..+++..+ ..+++|+++|... .-...|.+|...+.|+.
T Consensus 477 l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~ 556 (613)
T PHA02774 477 LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPF 556 (613)
T ss_pred hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCC
Confidence 1124799999993221 112335666666432 2356788886432 23457778887776654
Q ss_pred -----------CCHHHHHHHHHHHHHHcCCC
Q 021937 200 -----------LEPVHVTERLKHVIEAEGLD 219 (305)
Q Consensus 200 -----------~~~~~~~~~l~~~~~~~~~~ 219 (305)
++....+.++++...+..+.
T Consensus 557 P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 557 PLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred CcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 35567888888888776653
No 282
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.50 E-value=4e-05 Score=68.12 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC-cChhHHHHHHHHhhhcccccCCC
Q 021937 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD-RGIDVVRQQIQDFASTQSFSFGV 138 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~ 138 (305)
.....+.+.+..... .++++||.+|||||+++.+....... .+.++..+. .....+.+...........
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~~---- 93 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKER---- 93 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhcc----
Confidence 444555555555543 68999999999999998887775322 333333321 1112222223322222111
Q ss_pred CCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecCC----cccchhhhcceeEEEecCCCHHHHHH
Q 021937 139 KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV----NKIIPALQSRCTRFRFAPLEPVHVTE 207 (305)
Q Consensus 139 ~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~----~~l~~~l~~r~~~i~~~~~~~~~~~~ 207 (305)
+...+++||+|.... +...++.+-+.... .+++++... ......+..|...+.+.|++-.|...
T Consensus 94 --~~~yifLDEIq~v~~--W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 --EKSYIFLDEIQNVPD--WERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred --CCceEEEecccCchh--HHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 357999999999874 43334433333223 566665433 24456777788889999999998865
No 283
>PRK10536 hypothetical protein; Provisional
Probab=98.48 E-value=5.2e-06 Score=68.10 Aligned_cols=121 Identities=14% Similarity=0.082 Sum_probs=70.3
Q ss_pred cccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh-CCCCcccEEEeecCCCc---------------
Q 021937 53 ADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDR--------------- 116 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~--------------- 116 (305)
..+.+.......+..++... ..+++.||+|||||+++.+++.... ... +..+.+..+...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 34455556666666666553 4689999999999999999998532 322 222222222210
Q ss_pred ---ChhHHHHHHHHhhh-----------c-----c--cccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEE
Q 021937 117 ---GIDVVRQQIQDFAS-----------T-----Q--SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFA 175 (305)
Q Consensus 117 ---~~~~~~~~i~~~~~-----------~-----~--~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~ii 175 (305)
....+.+.+..... . . .+..+..-...+|||||++.++......++ -....++.+|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEEE
Confidence 00111222221100 0 0 122344455689999999999986655555 4445688888
Q ss_pred EEecC
Q 021937 176 LICNQ 180 (305)
Q Consensus 176 l~~~~ 180 (305)
++++.
T Consensus 208 ~~GD~ 212 (262)
T PRK10536 208 VNGDI 212 (262)
T ss_pred EeCCh
Confidence 88853
No 284
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.48 E-value=1.3e-06 Score=80.98 Aligned_cols=109 Identities=24% Similarity=0.290 Sum_probs=65.2
Q ss_pred ccccchHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC--hh
Q 021937 54 DVAAHRDIVDTIDRLTSENR------------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--ID 119 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~ 119 (305)
.+.|++.+++.+.-.+-++. --|++|.|.||+|||.+.+.+.+... ...+..-.++...+ ..
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP----r~vytsgkgss~~GLTAa 362 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP----RGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC----ceEEEccccccccCceeE
Confidence 56677777776655554321 13599999999999999999998752 11122212211111 11
Q ss_pred HHHHHH-HHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh
Q 021937 120 VVRQQI-QDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (305)
Q Consensus 120 ~~~~~i-~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~ 168 (305)
..+... .++. ...+.-.-+.++|.+|||+|+++.....++...++..
T Consensus 363 v~rd~~tge~~--LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQ 410 (682)
T COG1241 363 VVRDKVTGEWV--LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQ 410 (682)
T ss_pred EEEccCCCeEE--EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhc
Confidence 111111 0000 0011112244789999999999999999999999964
No 285
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.41 E-value=7e-06 Score=72.36 Aligned_cols=202 Identities=21% Similarity=0.244 Sum_probs=118.5
Q ss_pred ccccchHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHH
Q 021937 54 DVAAHRDIVDTIDRLTSENRL------------PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (305)
++.|+..+++.|.-++-++.. -+++|.|.||+.||.|.+.+.+... ...+.+-.+++ +....
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap----RgvYTTGrGSS--GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP----RGVYTTGRGSS--GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc----ccceecCCCCC--ccccc
Confidence 688999999999888765421 1389999999999999999987642 11122111111 11111
Q ss_pred HHHHHHhhhc-ccccCC--CCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-------------CCceEEEEecCC----
Q 021937 122 RQQIQDFAST-QSFSFG--VKASVKLVLLDEADAMTKDAQFALRRVIEKYT-------------KNTRFALICNQV---- 181 (305)
Q Consensus 122 ~~~i~~~~~~-~~~~~~--~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------------~~~~iil~~~~~---- 181 (305)
...+.+-... ....++ .-+..+|-.|||+|++......++...++... +.+.++.++|..
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRY 496 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRY 496 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCcccccc
Confidence 1111111000 000000 11335788999999999888888888887532 233444444321
Q ss_pred ---------cccchhhhcceeE-------------------------------EEecCCCHHHHHHHHHHHHHHcCCCCC
Q 021937 182 ---------NKIIPALQSRCTR-------------------------------FRFAPLEPVHVTERLKHVIEAEGLDVT 221 (305)
Q Consensus 182 ---------~~l~~~l~~r~~~-------------------------------i~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (305)
-.++.+|.+||.. ..|.|++..-++.+|.. +++.+..++
T Consensus 497 nprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~-ak~~~P~vp 575 (721)
T KOG0482|consen 497 NPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISL-AKRKNPVVP 575 (721)
T ss_pred CcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHH-HhhcCCCCC
Confidence 1456777777521 34666666666666643 555566677
Q ss_pred HHHHHHHHHHc--------------CCCHHHHHHHHHHHhhc-----cCccCHHHHHhhh
Q 021937 222 EGGLAALVRLC--------------NGDMRKALNILQSTHMA-----SQQITEEAVYLCT 262 (305)
Q Consensus 222 ~~~~~~l~~~~--------------~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~ 262 (305)
++..+.|.... .-.+|.++.++...... +..+..++|.+++
T Consensus 576 ~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EAL 635 (721)
T KOG0482|consen 576 EALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEAL 635 (721)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 77766665321 24688888877543332 3457777777666
No 286
>PRK04296 thymidine kinase; Provisional
Probab=98.40 E-value=3.3e-06 Score=67.24 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=52.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE--eecCCC-------cCh-------hHHHHHHHHhhhcccccCCCCC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE--LNASDD-------RGI-------DVVRQQIQDFASTQSFSFGVKA 140 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~--~~~~~~-------~~~-------~~~~~~i~~~~~~~~~~~~~~~ 140 (305)
.+++||+|+||||++..++.+....+....++. ++.... .+. ....+.+..+.. ...
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-------~~~ 77 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-------EGE 77 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-------hCC
Confidence 689999999999999999988765554433331 011100 000 001111111111 122
Q ss_pred ceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 141 SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
+..+|+|||++.+..++...+.+.+.. ....+++++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEec
Confidence 368999999999987655555555443 3556666653
No 287
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.38 E-value=2.8e-05 Score=66.46 Aligned_cols=197 Identities=18% Similarity=0.173 Sum_probs=106.0
Q ss_pred cccccchHHHHHHHHHHhcCCC--Ce-EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChh----------
Q 021937 53 ADVAAHRDIVDTIDRLTSENRL--PH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID---------- 119 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~~~--~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------- 119 (305)
.++.+++..+..|..++..... |. +.|+|-+|+|||.+++.+.+..+. ..+.+++.+--...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 3567888899999998876543 33 699999999999999999998732 22222222111111
Q ss_pred ---------------HHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH---HHHHHHHHHHHhcC-CceEEEEecC
Q 021937 120 ---------------VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD---AQFALRRVIEKYTK-NTRFALICNQ 180 (305)
Q Consensus 120 ---------------~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~l~~~l~~~~~-~~~iil~~~~ 180 (305)
.+...+..+.+... .......-+|++|.+|.+..- ..+.|+++-+-.+. ...++++...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~--~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPA--ATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHH--hhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 11111111111000 011234678999999988632 23344444333332 3344444433
Q ss_pred Ccccchh-hhc-ceeEEEecCCCHHHHHHHHHHHHH-HcCCCCCHH----HHHHHHHHcCCCHHHHHHHHHHHhh-c---
Q 021937 181 VNKIIPA-LQS-RCTRFRFAPLEPVHVTERLKHVIE-AEGLDVTEG----GLAALVRLCNGDMRKALNILQSTHM-A--- 249 (305)
Q Consensus 181 ~~~l~~~-l~~-r~~~i~~~~~~~~~~~~~l~~~~~-~~~~~~~~~----~~~~l~~~~~g~~r~~~~~l~~~~~-~--- 249 (305)
....-.. ... -...++|+.++.+++..++.+--. +....+-.. +++.+...|. |++.+...+..+.. .
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~wpky~ep 237 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAWPKYCEP 237 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhccc
Confidence 2221110 111 125689999999999998865322 111111112 2233445554 99888888865543 2
Q ss_pred --cCccCHHH
Q 021937 250 --SQQITEEA 257 (305)
Q Consensus 250 --~~~i~~~~ 257 (305)
.+.|++.+
T Consensus 238 i~~~~i~~~d 247 (438)
T KOG2543|consen 238 ITKGKIDPTD 247 (438)
T ss_pred cccCCCChhH
Confidence 24455555
No 288
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=3.4e-05 Score=74.92 Aligned_cols=191 Identities=12% Similarity=0.141 Sum_probs=118.0
Q ss_pred cccchHHHHHHHHHHhc---CCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC---CCcChhHHHHHHHHh
Q 021937 55 VAAHRDIVDTIDRLTSE---NRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS---DDRGIDVVRQQIQDF 128 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~ 128 (305)
++|++..++.|...+.. +....+++.|.+|.|||.+++.+.+.+.+.. ..++...+. .......+.+.+.++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHHH
Confidence 57888888888777764 3333489999999999999999999886541 112211111 111222222222222
Q ss_pred hhccc-----------------------------------cc---------------------------CCCCCceEEEE
Q 021937 129 ASTQS-----------------------------------FS---------------------------FGVKASVKLVL 146 (305)
Q Consensus 129 ~~~~~-----------------------------------~~---------------------------~~~~~~~~vli 146 (305)
.+... .+ ...+.++-|+|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 11100 00 00225588999
Q ss_pred EeCCCcCCHHHHHHHHHHHHHhc--C--CceEEEEecCCcccchhhhc--ceeEEEecCCCHHHHHHHHHHHHHHcCCCC
Q 021937 147 LDEADAMTKDAQFALRRVIEKYT--K--NTRFALICNQVNKIIPALQS--RCTRFRFAPLEPVHVTERLKHVIEAEGLDV 220 (305)
Q Consensus 147 iDe~~~l~~~~~~~l~~~l~~~~--~--~~~iil~~~~~~~l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (305)
+||+|..+..+.+.|-.+++... . ...+..+.+....+.....+ +...+.+.|++..+...++...+... ...
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~-~~~ 238 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT-KLL 238 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-ccc
Confidence 99999999998888888887654 0 01111111221222222222 24779999999999999998887542 245
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 021937 221 TEGGLAALVRLCNGDMRKALNILQSTHM 248 (305)
Q Consensus 221 ~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 248 (305)
..+..+.+.+.+.|+|=-+...++.+..
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 6778899999999998777766665554
No 289
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.38 E-value=2.9e-06 Score=76.59 Aligned_cols=110 Identities=23% Similarity=0.214 Sum_probs=63.2
Q ss_pred cccccchHHHHHHHHHHhcC------------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC--h
Q 021937 53 ADVAAHRDIVDTIDRLTSEN------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--I 118 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~ 118 (305)
..+-|++.++..+.-.+-++ .-.+++++|.||+|||.++++...... ...++.-+.+...+ .
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP----R~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP----RSVYTSGKASSAAGLTA 420 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC----cceEecCcccccccceE
Confidence 45667887777665555432 123599999999999999999987641 11111111111111 0
Q ss_pred hHHHHHH-HHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh
Q 021937 119 DVVRQQI-QDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (305)
Q Consensus 119 ~~~~~~i-~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~ 168 (305)
...+..- .++.-. .+.-.-+..+|-.|||+|++....+.+++..++..
T Consensus 421 aVvkD~esgdf~iE--AGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQ 469 (764)
T KOG0480|consen 421 AVVKDEESGDFTIE--AGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQ 469 (764)
T ss_pred EEEecCCCCceeee--cCcEEEccCceEEechhcccChHhHHHHHHHHHhh
Confidence 0000000 000000 00011234689999999999998899999999964
No 290
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.37 E-value=5.5e-07 Score=69.98 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=33.6
Q ss_pred ceEEEEEeCCCcC---CHHHHHHHHHHHHHhcCCceEEEEecC--Ccccchhhhcc--eeEEEecCCCHHHH
Q 021937 141 SVKLVLLDEADAM---TKDAQFALRRVIEKYTKNTRFALICNQ--VNKIIPALQSR--CTRFRFAPLEPVHV 205 (305)
Q Consensus 141 ~~~vliiDe~~~l---~~~~~~~l~~~l~~~~~~~~iil~~~~--~~~l~~~l~~r--~~~i~~~~~~~~~~ 205 (305)
...+++|||+..+ .+.-.+.+..+++ .+..++.+... ...+.+.+.+| +.++.+.+-..+.+
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhH
Confidence 4679999998776 3445666777777 23445444433 34577888887 57777765554433
No 291
>PRK04132 replication factor C small subunit; Provisional
Probab=98.36 E-value=3.3e-07 Score=87.30 Aligned_cols=50 Identities=46% Similarity=0.935 Sum_probs=47.4
Q ss_pred CcchhhhcCCCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHH
Q 021937 40 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 89 (305)
Q Consensus 40 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~ 89 (305)
+.||.++|+|++|++++|++.+++.|..++..+..+|++|+||||+||+.
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl 55 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCL 55 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCccc
Confidence 46899999999999999999999999999999999999999999999964
No 292
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.32 E-value=1e-06 Score=63.22 Aligned_cols=72 Identities=22% Similarity=0.416 Sum_probs=44.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCC---CcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQ---YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l 153 (305)
++|+|+||+|||++++.+++.+.... ....+...+... . ....+ . +..++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~-----~---~w~gY------~-----~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD-----K---FWDGY------Q-----GQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc-----c---hhhcc------C-----CCcEEEEeecCcc
Confidence 47999999999999999998885321 111222212111 1 11111 1 1479999999888
Q ss_pred CHH----HHHHHHHHHHH
Q 021937 154 TKD----AQFALRRVIEK 167 (305)
Q Consensus 154 ~~~----~~~~l~~~l~~ 167 (305)
... ....+.+++..
T Consensus 62 ~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 62 NDGYNYSDESELIRLISS 79 (107)
T ss_pred ccccchHHHHHHHHHHhc
Confidence 754 45567777664
No 293
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=1.4e-05 Score=77.50 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=106.7
Q ss_pred ccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh-CCCCcccEEEeecCCCcChhHHHHHHHHhhhccc-
Q 021937 56 AAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGIDVVRQQIQDFASTQS- 133 (305)
Q Consensus 56 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 133 (305)
+|++..++.+.+.+.......+-++|..|+||||+++.+.+... -.+....++-+..+.......+.+.+..-.....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999888777789999999999999999999875 2111111222222222222233222222111100
Q ss_pred -------------ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-c---CCceEEEEecCCcccchhhhcceeEEE
Q 021937 134 -------------FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-T---KNTRFALICNQVNKIIPALQSRCTRFR 196 (305)
Q Consensus 134 -------------~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-~---~~~~iil~~~~~~~l~~~l~~r~~~i~ 196 (305)
...-.+.++-+|++||++.=.. ++.+..+ | ...++++||....--.... .....++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~d------w~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m-~~~~~~~ 313 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVD------WDKIGVPFPSRENGSKVVLTTRSEEVCGRAM-GVDYPIE 313 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEeccccccc------HHhcCCCCCCccCCeEEEEEeccHhhhhccc-cCCcccc
Confidence 0011235678999999875432 3333321 2 2367778876643221111 2234566
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHcCCCHHHHHHHHHHH
Q 021937 197 FAPLEPVHVTERLKHVIEAEGLD--V-TEGGLAALVRLCNGDMRKALNILQST 246 (305)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~--~-~~~~~~~l~~~~~g~~r~~~~~l~~~ 246 (305)
..-++.++.=+.+...+...... . -++....+++.|+|-|-++.-+-..+
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 66778888777777766433211 1 25677888999998665444433333
No 294
>PTZ00202 tuzin; Provisional
Probab=98.29 E-value=6.5e-05 Score=66.06 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCCccccccchHHHHHHHHHHhcCC---CCeEEEECCCCCcHHHHHHHHHHHH
Q 021937 48 RPQSLADVAAHRDIVDTIDRLTSENR---LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 48 ~p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.|.....|+|++..+.+|...+.+.. +..++|+|++|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 46667889999999999999997532 2247899999999999999999776
No 295
>PHA02624 large T antigen; Provisional
Probab=98.28 E-value=6.2e-06 Score=75.08 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCC
Q 021937 61 IVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVK 139 (305)
Q Consensus 61 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (305)
....++.++.+-+... ++|+||+|+|||+++.++++.+ ....+.++++..... -.+.-+
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L-----~G~vlsVNsPt~ks~----FwL~pl----------- 476 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC-----GGKSLNVNCPPDKLN----FELGCA----------- 476 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc-----CCeEEEeeCCcchhH----HHhhhh-----------
Confidence 3344555555544333 8999999999999999999998 334555665542211 111111
Q ss_pred CceEEEEEeCCCcCCH-----------HHHHHHHHHHHHh-c-------------CCceEEEEecCCcccchhhhcce-e
Q 021937 140 ASVKLVLLDEADAMTK-----------DAQFALRRVIEKY-T-------------KNTRFALICNQVNKIIPALQSRC-T 193 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~-~-------------~~~~iil~~~~~~~l~~~l~~r~-~ 193 (305)
....+++|||+-.-.- +....|.+.++.. + .-.+.|+|+|. ..++.++.-|+ .
T Consensus 477 ~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~ 555 (647)
T PHA02624 477 IDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAK 555 (647)
T ss_pred hhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHH
Confidence 1147899999843221 1235677777744 2 11234455554 46888998897 5
Q ss_pred EEEecC
Q 021937 194 RFRFAP 199 (305)
Q Consensus 194 ~i~~~~ 199 (305)
++.|.+
T Consensus 556 ~~~F~~ 561 (647)
T PHA02624 556 VLDFKP 561 (647)
T ss_pred hccccc
Confidence 566644
No 296
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.27 E-value=1.8e-05 Score=61.28 Aligned_cols=57 Identities=14% Similarity=0.291 Sum_probs=41.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeEEE
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFR 196 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~i~ 196 (305)
.++.+++-|| -.+++++....+++++++.+....-++++++...+..++..|+..+.
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe
Confidence 5678999999 57788888889999999887655555555555556666666654443
No 297
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.27 E-value=4e-05 Score=64.09 Aligned_cols=167 Identities=19% Similarity=0.262 Sum_probs=93.1
Q ss_pred ccccchHHHHHHHHHHh--cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc
Q 021937 54 DVAAHRDIVDTIDRLTS--ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST 131 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (305)
+++--++.++.+.+... +.+..|++|.|.+|+||+++++..+.-. ...++.+.....-+..+.++.++.+...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFIC-----GYEVFQIEITKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHT-----TEEEE-TTTSTTTHHHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHh-----ccceEEEEeeCCcCHHHHHHHHHHHHHH
Confidence 34455566665544432 2344679999999999999999777654 4456666555544455555566555444
Q ss_pred ccccCCCCCceEEEEEeCCCcCCHHH---------------------HHH--------------------HHH-HHHHhc
Q 021937 132 QSFSFGVKASVKLVLLDEADAMTKDA---------------------QFA--------------------LRR-VIEKYT 169 (305)
Q Consensus 132 ~~~~~~~~~~~~vliiDe~~~l~~~~---------------------~~~--------------------l~~-~l~~~~ 169 (305)
... +.++.+++++|.+.....- .+. +++ +++...
T Consensus 84 ag~----~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr 159 (268)
T PF12780_consen 84 AGI----KGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVR 159 (268)
T ss_dssp HHC----S-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHC
T ss_pred Hhc----cCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 332 2347889999876653211 011 111 122334
Q ss_pred CCceEEEEecCCc-------ccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 021937 170 KNTRFALICNQVN-------KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR 230 (305)
Q Consensus 170 ~~~~iil~~~~~~-------~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 230 (305)
.+..++++.+... ...|++.++|.+.-+.+++.+.+..+-...+..... ++++..+.++.
T Consensus 160 ~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~-~~~~~~~~l~~ 226 (268)
T PF12780_consen 160 KNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIEL-LSEELKKSLAE 226 (268)
T ss_dssp CCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHT-SS--HHHHHHH
T ss_pred hheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhcc-cchhHHHHHHH
Confidence 5667777764332 235677788888899999999988877766544321 34444444444
No 298
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.26 E-value=5e-06 Score=60.29 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=43.0
Q ss_pred cccccchHHHHHHHHHHh----cCCC--Ce-EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021937 53 ADVAAHRDIVDTIDRLTS----ENRL--PH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 53 ~~~~g~~~~~~~l~~~l~----~~~~--~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
..+.||.-+.+.+.+.+. ...+ |. +.++|++|||||.+++.+|+.+...+....++..-.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~ 91 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFI 91 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeec
Confidence 467888766665555544 3222 22 569999999999999999999988777776666533
No 299
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.25 E-value=5.9e-06 Score=72.07 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=65.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhCCC-CcccEEEeecCCCcChhHHHHHHHHhhhcc-c---ccCCCCCceEEEEE
Q 021937 73 RLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDFASTQ-S---FSFGVKASVKLVLL 147 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~vlii 147 (305)
.+.+++|||+.|+|||.|+..+.+.+.... ....|.. ....+.+.+....... + ..........||++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~-------Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcf 133 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE-------FMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCF 133 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccH-------HHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEE
Confidence 345699999999999999999998874311 1111111 0111111222111000 0 00001122569999
Q ss_pred eCCCcCCHHHHHHHHHHHHHhcCC-ceEEEEecCCc-c-------------cchhhhcceeEEEecCC
Q 021937 148 DEADAMTKDAQFALRRVIEKYTKN-TRFALICNQVN-K-------------IIPALQSRCTRFRFAPL 200 (305)
Q Consensus 148 De~~~l~~~~~~~l~~~l~~~~~~-~~iil~~~~~~-~-------------l~~~l~~r~~~i~~~~~ 200 (305)
||++--+....-.|-.+++..-.. +++|.|+|... . ..+.+.++|.++.+...
T Consensus 134 DEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 134 DEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred eeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 999887765555555666655444 45555555432 1 13455667777776655
No 300
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=98.20 E-value=7.3e-05 Score=64.18 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=37.6
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Q 021937 194 RFRFAPLEPVHVTERLKHVIEAEGL---DVTEGGLAALVRLCNGDMRKALN 241 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~ 241 (305)
.+++++++.+|...++..+....-+ ..++...+.+.-.++||++.+..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999888765433 24556677777788999998753
No 301
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.19 E-value=0.00011 Score=73.50 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=101.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc----ccccCC----CCCceEEEEE
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST----QSFSFG----VKASVKLVLL 147 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~----~~~~~~vlii 147 (305)
.++|-||+.+|||+++..+++.. .-.++.+|..... ++.+.+.++... ..|..+ .-.++-.|++
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t-----ghkfVRINNHEHT---dlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVL 961 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET-----GHKFVRINNHEHT---DLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVL 961 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh-----CccEEEecCcccc---hHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEe
Confidence 39999999999999999999986 3356666654432 222222222111 111111 0122468999
Q ss_pred eCCCcCCHHHHHHHHHHHHHhc------------CCceE-EEEecCC-------cccchhhhcceeEEEecCCCHHHHHH
Q 021937 148 DEADAMTKDAQFALRRVIEKYT------------KNTRF-ALICNQV-------NKIIPALQSRCTRFRFAPLEPVHVTE 207 (305)
Q Consensus 148 De~~~l~~~~~~~l~~~l~~~~------------~~~~i-il~~~~~-------~~l~~~l~~r~~~i~~~~~~~~~~~~ 207 (305)
||....+.+..++|-+++++.. ++..| +++|..+ ..+..++++||..++|...+.+++..
T Consensus 962 DELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ 1041 (4600)
T COG5271 962 DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEE 1041 (4600)
T ss_pred eccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHH
Confidence 9999999999999999998632 22333 3344332 24678999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Q 021937 208 RLKHVIEAEGLDVTEGGLAALVRLCNG-DMRKALN 241 (305)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~ 241 (305)
++..+ +++.+.....|++...| ..|+-.+
T Consensus 1042 ILh~r-----c~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271 1042 ILHGR-----CEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred HHhcc-----CccCHHHHHHHHHHHHHhhhhhhHH
Confidence 99764 56777777777775543 3444443
No 302
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.19 E-value=3.2e-05 Score=67.17 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh--CCCCcccEEEeecCCCcChhHHHHHHHHhhhccc-cc---------CCCCCc
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLY--GAQYHNMILELNASDDRGIDVVRQQIQDFASTQS-FS---------FGVKAS 141 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~---------~~~~~~ 141 (305)
...+.|.||+|+||||++..+|..+. ......-++..++.+....+.++..- .....+- .. -..-..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya-~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYA-DIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHH-HHhCCceEEecCHHHHHHHHHHhhc
Confidence 34489999999999998888887775 44556667777766543333322211 1100000 00 000123
Q ss_pred eEEEEEeCCCcCC--HHHHHHHHHHHHHh-cCCceEEEEecCCcccchhhhcc
Q 021937 142 VKLVLLDEADAMT--KDAQFALRRVIEKY-TKNTRFALICNQVNKIIPALQSR 191 (305)
Q Consensus 142 ~~vliiDe~~~l~--~~~~~~l~~~l~~~-~~~~~iil~~~~~~~l~~~l~~r 191 (305)
+++|++|=+.+-. ......|-.+++.. +..+.+++.++....-...+..+
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 5899999876654 33445566666543 33455566555544444444444
No 303
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.18 E-value=7.5e-06 Score=65.30 Aligned_cols=103 Identities=18% Similarity=0.341 Sum_probs=49.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCC-CcccEEEeecCC-Cc---------------ChhHHHHHHHHhhh-------
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASD-DR---------------GIDVVRQQIQDFAS------- 130 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~-~~---------------~~~~~~~~i~~~~~------- 130 (305)
+.+++.||+|||||.++-+.+.+....+ +...++.-.... .. ....+.+.+.....
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~ 99 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEEL 99 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 4589999999999999999887664332 222222211111 00 11112222221100
Q ss_pred ---------cccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 131 ---------TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 131 ---------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
...+..+..-...+||+||++.+.+.....+ +-+...++++|++++.
T Consensus 100 ~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 100 IQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE--
T ss_pred hhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCc
Confidence 0113344445568999999999997765554 4445567889988854
No 304
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.16 E-value=2.3e-05 Score=62.55 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=56.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCC----------------CC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG----------------VK 139 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------~~ 139 (305)
.++|.||+|+||||++..++..+...+....++..+..+....+.++...+... ...+... ..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHHHhh
Confidence 378999999999999999999887667777777777666444444433322221 1100000 01
Q ss_pred CceEEEEEeCCCcCCH--HHHHHHHHHHHHhc
Q 021937 140 ASVKLVLLDEADAMTK--DAQFALRRVIEKYT 169 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~ 169 (305)
.+..+|+||=..+... +....+.++++...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~ 113 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALN 113 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcC
Confidence 2357999998877663 34556666666553
No 305
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.14 E-value=2.9e-05 Score=59.98 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=22.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
++|+|++|+|||+++..++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999987543
No 306
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.14 E-value=4.5e-06 Score=73.25 Aligned_cols=89 Identities=26% Similarity=0.317 Sum_probs=53.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH--hCCCCcccEEEeecCCCcChhHHHHHHHHhh----------hcccc------cCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKL--YGAQYHNMILELNASDDRGIDVVRQQIQDFA----------STQSF------SFG 137 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~------~~~ 137 (305)
.+++.|.||||||.++..++..+ ...+....++..+.+- ...++..+.... ....+ ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l---~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL---RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH---HHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 47899999999999999999998 4444444444444332 222222222211 00001 112
Q ss_pred CCCceEEEEEeCCCcCCHH--------HHHHHHHHHHH
Q 021937 138 VKASVKLVLLDEADAMTKD--------AQFALRRVIEK 167 (305)
Q Consensus 138 ~~~~~~vliiDe~~~l~~~--------~~~~l~~~l~~ 167 (305)
......+||+||+|++... ..+.|..+++.
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 3355799999999999873 23556666665
No 307
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.13 E-value=0.00032 Score=57.38 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=72.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCc---------------ChhHHHHH-------HHHhhhccc
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDR---------------GIDVVRQQ-------IQDFASTQS 133 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-------i~~~~~~~~ 133 (305)
.+++.|++|+|||+++..+...+... + ..++-+...... ..+.+... +.......
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~-f-~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~- 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK-F-DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS- 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc-C-CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh-
Confidence 38999999999999999998876322 1 111111111111 01111111 11111100
Q ss_pred ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc-CCceEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHH
Q 021937 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT-KNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHV 212 (305)
Q Consensus 134 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 212 (305)
......+..+||+||+..- .-..+.+..++.... -+..+++++.....+++.++.-...+-+-..+..++..++...
T Consensus 92 -~~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 92 -PQKKNNPRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRNM 169 (241)
T ss_pred -cccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHhc
Confidence 1111244789999998642 112334556655332 2466777888888899998777754443346777765555443
No 308
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.11 E-value=3.8e-05 Score=61.94 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=40.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc---CCceEEEEecCCcccchhhhcce
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT---KNTRFALICNQVNKIIPALQSRC 192 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~---~~~~iil~~~~~~~l~~~l~~r~ 192 (305)
..+.++|+|| ++.++....+.|++.+++.. ....++++|...+.+++-+..+.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 5678999999 78888888888888887653 34568888888877777665543
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=98.11 E-value=4.3e-05 Score=65.95 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=52.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc----------------CCCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS----------------FGVK 139 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~ 139 (305)
.++|+|++|+||||++..++..+...+....++..+.........+....... ....+. ....
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l-gv~v~~~~~g~dp~~v~~~ai~~~~~ 220 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL-GVKVIKHKYGADPAAVAYDAIEHAKA 220 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc-CCceecccCCCCHHHHHHHHHHHHHh
Confidence 38899999999999999999988665544333332222111112222111111 000000 0011
Q ss_pred CceEEEEEeCCCcCC--HHHHHHHHHHHHHhcCCceE
Q 021937 140 ASVKLVLLDEADAMT--KDAQFALRRVIEKYTKNTRF 174 (305)
Q Consensus 140 ~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~~~~i 174 (305)
.+..+|+||.+..+. ......|..+.+...+...+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~i 257 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVI 257 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEE
Confidence 235799999999885 34456666665544334333
No 310
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.10 E-value=4.8e-05 Score=75.91 Aligned_cols=152 Identities=21% Similarity=0.255 Sum_probs=94.9
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhc----------cc
Q 021937 64 TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFAST----------QS 133 (305)
Q Consensus 64 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~ 133 (305)
++.+.+.-++ .++|.|.||+|||+++.++|+.. +...+.+|.+..... -..+....-. ++
T Consensus 1535 rVlRAmqv~k--pilLEGsPGVGKTSlItaLAr~t-----G~kliRINLSeQTdL---~DLfGsd~Pve~~Gef~w~dap 1604 (4600)
T COG5271 1535 RVLRAMQVGK--PILLEGSPGVGKTSLITALARKT-----GKKLIRINLSEQTDL---CDLFGSDLPVEEGGEFRWMDAP 1604 (4600)
T ss_pred HHHHHHhcCC--ceeecCCCCccHHHHHHHHHHHh-----cCceEEeeccccchH---HHHhCCCCCcccCceeEecccH
Confidence 3344444343 39999999999999999999987 445566665543211 1111110000 00
Q ss_pred ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhc--------------CCceEEEEec------CCcccchhhhccee
Q 021937 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYT--------------KNTRFALICN------QVNKIIPALQSRCT 193 (305)
Q Consensus 134 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~--------------~~~~iil~~~------~~~~l~~~l~~r~~ 193 (305)
|.. .-.++..+++||+...+....+.|-.+++... ++.++..+-| ....+++.+.+||.
T Consensus 1605 fL~-amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs 1683 (4600)
T COG5271 1605 FLH-AMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS 1683 (4600)
T ss_pred HHH-HhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh
Confidence 000 11336789999999999888888888887432 2233333322 22458999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 021937 194 RFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVR 230 (305)
Q Consensus 194 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 230 (305)
++.+..++.+++..+..... ..+.++....+.+
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~y----p~v~~d~~~kiik 1716 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMY----PQVNEDWRLKIIK 1716 (4600)
T ss_pred eEEecccccchHHHHHHhhC----CccChHHHHHHHH
Confidence 99999999999988776542 3455554444433
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.09 E-value=1e-05 Score=62.77 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=57.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC--h-hHHHHHHHH---h----hhcccccCCCCCceE
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--I-DVVRQQIQD---F----ASTQSFSFGVKASVK 143 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~i~~---~----~~~~~~~~~~~~~~~ 143 (305)
...+.|.||+|+||||+++.++........ -+.++...... . ...+..+.- + .+...+....-.++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G---~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSG---EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCe---EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345899999999999999999876532111 12222211110 0 000000000 0 000000011123478
Q ss_pred EEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 144 LVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 144 vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999 467888888889998876643 445666665543
No 312
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.08 E-value=1.3e-05 Score=72.31 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=73.5
Q ss_pred ccccchHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHHhC----CCCcccEEEeecCCCcC
Q 021937 54 DVAAHRDIVDTIDRLTSENR------------LPHLLLYGPPGTGKTSTILAVARKLYG----AQYHNMILELNASDDRG 117 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~ 117 (305)
.+.|+..++..+.-.+-++. --+++|+|.||+|||.+++.+++.-.. .|.+...+.+++.-...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 45577777777666655431 124999999999999999988875321 11122222221111100
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------------cCCceEEEEecCC---
Q 021937 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQV--- 181 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~iil~~~~~--- 181 (305)
+ ..+ ++... .+.-.-+.++|-+|||+|++.......+...++.. .+.+.+|.++|..
T Consensus 530 P-vtr----EWTLE--aGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGR 602 (854)
T KOG0477|consen 530 P-VTR----EWTLE--AGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGR 602 (854)
T ss_pred C-ccc----eeeec--cCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCc
Confidence 0 000 00000 00001234689999999999877666677766643 2344566665431
Q ss_pred ----------cccchhhhcceeE
Q 021937 182 ----------NKIIPALQSRCTR 194 (305)
Q Consensus 182 ----------~~l~~~l~~r~~~ 194 (305)
-.+...+.+||.+
T Consensus 603 Y~~s~tFaqNV~ltePIlSRFDi 625 (854)
T KOG0477|consen 603 YNPSLTFAQNVDLTEPILSRFDI 625 (854)
T ss_pred cCCccchhhccccccchhhhcce
Confidence 1455677788644
No 313
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=98.06 E-value=0.0011 Score=58.58 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=41.8
Q ss_pred cccchHHHHHHHHHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021937 55 VAAHRDIVDTIDRLTS---ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 55 ~~g~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
-+|++..++.+.+.+. .+....-++.|.-|+|||++++.+.......++-...+.++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v~ls 86 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEVDLS 86 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4688888887776665 45444478999999999999999998876665544444333
No 314
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.06 E-value=5.6e-05 Score=72.48 Aligned_cols=115 Identities=13% Similarity=0.232 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH-------HHHhhhc
Q 021937 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-------IQDFAST 131 (305)
Q Consensus 59 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~ 131 (305)
+.-.+.+...+.+. ..++|.|++||||||+++++...+...++.. ..+ .+.......+.+. +..+...
T Consensus 355 ~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~~V--~~~-ApTg~Aa~~L~~~~g~~a~Ti~~~~~~ 429 (744)
T TIGR02768 355 EEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGYRV--IGA-ALSGKAAEGLQAESGIESRTLASLEYA 429 (744)
T ss_pred HHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCCeE--EEE-eCcHHHHHHHHhccCCceeeHHHHHhh
Confidence 44444555544432 3579999999999999999988876555432 222 2221111111110 1111000
Q ss_pred ccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 132 QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 132 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.......-.+..+|||||+..++......|+..... ...++|++++.
T Consensus 430 ~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~ 476 (744)
T TIGR02768 430 WANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDP 476 (744)
T ss_pred hccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCh
Confidence 000011123468999999999998777766665443 36778888743
No 315
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.05 E-value=2.7e-05 Score=72.39 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=61.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCc--ccEEEeecCCCcChhHHHHHHHHhh-----------------------
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYH--NMILELNASDDRGIDVVRQQIQDFA----------------------- 129 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~----------------------- 129 (305)
+..+|+|+|||||||++..+...+...... ..-+.+..+.......+.+.+....
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrl 240 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRL 240 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhh
Confidence 348999999999999999998876432211 1224444444444444444332211
Q ss_pred -hccc----cc--CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 130 -STQS----FS--FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 130 -~~~~----~~--~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
...+ +. .....+..+|||||+-.++......|+ +..+...++|++++.
T Consensus 241 Lg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll---~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 241 LGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLL---KALPPNTKLILLGDK 295 (586)
T ss_pred hcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHH---HhcCCCCEEEEECCh
Confidence 0000 00 011224579999999999976555544 445667889999854
No 316
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.05 E-value=4.1e-05 Score=71.38 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=62.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCC-CcccEEEeecCCCcChhHHHHHHHHh------------------------hh
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGIDVVRQQIQDF------------------------AS 130 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~------------------------~~ 130 (305)
..+|+|+|||||||++..+...+.... .....+.+..+.......+.+.+... ..
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 489999999999999999988764321 12234555555544444444444321 11
Q ss_pred ccc----cc--CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 131 TQS----FS--FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 131 ~~~----~~--~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
..+ +. ....-+..+|||||+-.++-.....|++ ..+++.++|++++.
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~---al~~~~rlIlvGD~ 301 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLID---ALPPHARVIFLGDR 301 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHH---hcccCCEEEEecch
Confidence 100 00 0111234799999999998665555444 55678899999864
No 317
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.04 E-value=1.5e-05 Score=65.96 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.3
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHhCC
Q 021937 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
+.+..++|.||+|+||||+++.+++.+...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 344569999999999999999999987554
No 318
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.02 E-value=6.9e-05 Score=59.35 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=35.7
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcc
Q 021937 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSR 191 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r 191 (305)
-++.++++||. -.|+++.....+..+.+......-.++.++...+......|
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadr 205 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADR 205 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhhe
Confidence 55789999996 45678888889998887765554444444444555555555
No 319
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=5.4e-05 Score=66.60 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=53.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhC----CCCcccEEEeecCCCcChhHHHHHHHHhhhccc--ccC-----------C
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYG----AQYHNMILELNASDDRGIDVVRQQIQDFASTQS--FSF-----------G 137 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~-----------~ 137 (305)
..++++||+|+||||++..++..+.. .+....++..++........ +..+..... +.. .
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 34899999999999999999987752 34455566665543222222 222222111 000 0
Q ss_pred CCCceEEEEEeCCCcCCHH--HHHHHHHHHHHh
Q 021937 138 VKASVKLVLLDEADAMTKD--AQFALRRVIEKY 168 (305)
Q Consensus 138 ~~~~~~vliiDe~~~l~~~--~~~~l~~~l~~~ 168 (305)
...+..+|+||.+.+...+ ....+..+++..
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 1245789999999988744 335566666644
No 320
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.00 E-value=8.1e-05 Score=62.36 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=27.1
Q ss_pred HHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021937 66 DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 66 ~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
......+...++++.||+|+||||+++.++..+.
T Consensus 103 ~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 103 PYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3333445456799999999999999999998874
No 321
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.98 E-value=8.4e-07 Score=76.87 Aligned_cols=144 Identities=24% Similarity=0.243 Sum_probs=69.7
Q ss_pred ccccchHHHHHHHHHHhcC------------CCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcCh--h
Q 021937 54 DVAAHRDIVDTIDRLTSEN------------RLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI--D 119 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~ 119 (305)
.+.|++.++..+.-.+-++ ..-|++|.|.||+|||.+.+.+.+.. ....+..-......+. .
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEECCCCcccCCccce
Confidence 4567777766554333222 12259999999999999999876543 1111111111111110 0
Q ss_pred HHHHHH-HHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------------cCCceEEEEecCCc---
Q 021937 120 VVRQQI-QDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN--- 182 (305)
Q Consensus 120 ~~~~~i-~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~iil~~~~~~--- 182 (305)
..+... ..+.-. .+.-..+.++|++|||++.+..+....|+..++.. +.++.++.++|...
T Consensus 101 ~~~d~~~~~~~le--aGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~ 178 (331)
T PF00493_consen 101 VSRDPVTGEWVLE--AGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRY 178 (331)
T ss_dssp ECCCGGTSSECEE--E-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S
T ss_pred eccccccceeEEe--CCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhc
Confidence 000000 000000 00001234689999999999999999999999963 23455666665332
Q ss_pred ----------ccchhhhcceeEE-E-ecCCCHH
Q 021937 183 ----------KIIPALQSRCTRF-R-FAPLEPV 203 (305)
Q Consensus 183 ----------~l~~~l~~r~~~i-~-~~~~~~~ 203 (305)
.+++.+.+||..+ . ..+++.+
T Consensus 179 ~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~ 211 (331)
T PF00493_consen 179 DPNKSLSENINLPPPLLSRFDLIFLLRDKPDEE 211 (331)
T ss_dssp -TTS-CGCCT-S-CCCHCC-SEEECC--TTT-H
T ss_pred chhhhhHHhcccchhhHhhcCEEEEeccccccc
Confidence 3677889998443 3 3445533
No 322
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.98 E-value=5.4e-05 Score=57.86 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=65.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC-CcChh--------------------------HH----HHH
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGID--------------------------VV----RQQ 124 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------~~----~~~ 124 (305)
.+.+|+++|.||||+|..++-+....+....++.+--.. ..+.. .- ...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 367888889999999999999887777777666654432 01100 00 001
Q ss_pred HHHhhhcccccCCCCCceEEEEEeCCCcCCH---HHHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 125 IQDFASTQSFSFGVKASVKLVLLDEADAMTK---DAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
+....... .....++|||||+-.... -..+.++++++..|.+.-+|+|++...
T Consensus 84 ~~~a~~~~-----~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKEAI-----ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHH-----hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11110100 123478999999765532 135678889999988999999997743
No 323
>PRK13695 putative NTPase; Provisional
Probab=97.97 E-value=0.00027 Score=55.43 Aligned_cols=69 Identities=12% Similarity=0.222 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCcCC---HHHHHHHHHHHHHhcCCceEEEEecCCc--ccchhhhcc--eeEEEecCCCHHHHHHHHHHH
Q 021937 141 SVKLVLLDEADAMT---KDAQFALRRVIEKYTKNTRFALICNQVN--KIIPALQSR--CTRFRFAPLEPVHVTERLKHV 212 (305)
Q Consensus 141 ~~~vliiDe~~~l~---~~~~~~l~~~l~~~~~~~~iil~~~~~~--~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~ 212 (305)
++.++++||+..+. ....+.+..+++ ....++++++... ...+.+..+ +.++++.+-+.+++...+.++
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 46899999975543 233444555553 2456666666532 345556555 467888777777766665544
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.97 E-value=0.00013 Score=65.23 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=30.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
.++++|++|+||||++..++..+...++...++..++.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 38899999999999999999998776665555555443
No 325
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.96 E-value=0.00017 Score=56.62 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccE----EEeecCCC-cChhHHHHHHHHhhhcccccCCCCCceEEEEEe
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMI----LELNASDD-RGIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiD 148 (305)
...+.|.||.|+||||+++.++.......-...+ +.+..... ..... ++.+.-+.. ...++.++++|
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~lara-------l~~~p~lllLD 96 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIAAA-------LLRNATFYLFD 96 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHHHH-------HhcCCCEEEEE
Confidence 3458899999999999999998865322111111 00000000 01111 111111100 11236899999
Q ss_pred CC-CcCCHHHHHHHHHHHHHhcCC--ceEEEEecCC
Q 021937 149 EA-DAMTKDAQFALRRVIEKYTKN--TRFALICNQV 181 (305)
Q Consensus 149 e~-~~l~~~~~~~l~~~l~~~~~~--~~iil~~~~~ 181 (305)
|- ..++......+.+++.+.... ..+++++.+.
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 94 567888888888888765322 4566666554
No 326
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.96 E-value=8.6e-05 Score=58.27 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=28.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEE
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (305)
+.++++|+||+||||+++.+++.+.+..+.....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l 35 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHL 35 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcccc
Confidence 5589999999999999999999998766544433
No 327
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.96 E-value=0.00012 Score=69.92 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=59.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH-------HHHhhhcccc---c--CCCCCceE
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-------IQDFASTQSF---S--FGVKASVK 143 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~---~--~~~~~~~~ 143 (305)
.++|+|+|||||||+++++.+.+...+... .+.+..+.......+.+. +..+.....- . ........
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~-~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLL-PVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCc-eEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 589999999999999999998876543111 222333332222222221 1111111100 0 00113468
Q ss_pred EEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 144 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 144 vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+|||||+..++......|+. ..+...++|++++.
T Consensus 419 llIvDEaSMvd~~~~~~Ll~---~~~~~~rlilvGD~ 452 (720)
T TIGR01448 419 LLIVDESSMMDTWLALSLLA---ALPDHARLLLVGDT 452 (720)
T ss_pred EEEEeccccCCHHHHHHHHH---hCCCCCEEEEECcc
Confidence 99999999999776655554 44567889998854
No 328
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.95 E-value=6.3e-05 Score=66.24 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 58 HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 58 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
|..+.+.+.+.+....+..+++.|++|||||++++++.+.+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4555666666666666667999999999999999999998854
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.95 E-value=0.00016 Score=54.86 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=55.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC------CCcChhHHHHHHHHhhhcccccCCCCCceEEEEEe
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS------DDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLD 148 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiD 148 (305)
..+.|.|++|+||||+++.++....... . -+.++.. ........ +.+.-+ . ....++.++++|
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~-G--~i~~~~~~~i~~~~~lS~G~~-~rv~la-r------al~~~p~illlD 95 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDE-G--IVTWGSTVKIGYFEQLSGGEK-MRLALA-K------LLLENPNLLLLD 95 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCc-e--EEEECCeEEEEEEccCCHHHH-HHHHHH-H------HHhcCCCEEEEe
Confidence 4588999999999999999988653211 1 0111110 00111111 111110 0 011236899999
Q ss_pred C-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 149 E-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 149 e-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
| ...++......+.+++.+. +..+++++.+..
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 9 4678888888899988876 345666665543
No 330
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.95 E-value=0.00013 Score=64.59 Aligned_cols=108 Identities=25% Similarity=0.300 Sum_probs=62.3
Q ss_pred ccccchHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHH
Q 021937 54 DVAAHRDIVDTIDRLTSENR------------LPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (305)
.+.|+..+++.+.=++-++. --+++|.|.||+.|+.+++.+-+.. ...++.++ ......-+
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs------PIaVYTSG-KGSSAAGL 404 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS------PIAVYTSG-KGSSAAGL 404 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC------ceEEEecC-CCcccccc
Confidence 45688888887766664431 1138999999999999999887642 12222221 11111111
Q ss_pred HHHHHHhhhccccc--CC--CCCceEEEEEeCCCcCCHHHHHHHHHHHHHh
Q 021937 122 RQQIQDFASTQSFS--FG--VKASVKLVLLDEADAMTKDAQFALRRVIEKY 168 (305)
Q Consensus 122 ~~~i~~~~~~~~~~--~~--~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~ 168 (305)
...+..-.....|. ++ .-+.++|++|||+|++..+..-++...++..
T Consensus 405 TASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQ 455 (729)
T KOG0481|consen 405 TASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQ 455 (729)
T ss_pred eeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhh
Confidence 11110000100000 00 1244689999999999998888888888753
No 331
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.95 E-value=6.7e-05 Score=65.84 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=50.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH-HhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARK-LYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAM 153 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l 153 (305)
-++++.||+|||||+++.++... ....+ ...+...+-..+.. ... +.-.+.++|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG-----------~f~T~a~Lf~~L~~--~~l----g~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG-----------GTITVAKLFYNIST--RQI----GLVGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC-----------CcCcHHHHHHHHHH--HHH----hhhccCCEEEEEcCCCC
Confidence 45999999999999999998877 22122 11122222222221 000 01123689999999996
Q ss_pred CHH----HHHHHHHHHHHh---------cCCceEEEEec
Q 021937 154 TKD----AQFALRRVIEKY---------TKNTRFALICN 179 (305)
Q Consensus 154 ~~~----~~~~l~~~l~~~---------~~~~~iil~~~ 179 (305)
.-. ..+.+-..++.. ..+..+++++|
T Consensus 273 p~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGN 311 (449)
T TIGR02688 273 KFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGN 311 (449)
T ss_pred cCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcc
Confidence 533 344555555532 13445666654
No 332
>PRK08118 topology modulation protein; Reviewed
Probab=97.94 E-value=0.00016 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.++++||+|+||||+++.+++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 333
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.93 E-value=2.3e-05 Score=68.09 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
+++...+|.||+|+||||+++.+++.+....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nh 197 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNH 197 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhc
Confidence 4455689999999999999999999886543
No 334
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.92 E-value=6e-05 Score=59.83 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=25.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
++++||||+|||+++..++......+....++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999988876555544444443
No 335
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00017 Score=62.88 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=30.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
..+.|.||+|+||||++..++..+...+....++..+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 348999999999999999999988766655555554433
No 336
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.91 E-value=0.00014 Score=61.77 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=55.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc----CCCCCceEEEEEeCC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS----FGVKASVKLVLLDEA 150 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~vliiDe~ 150 (305)
.++++||+-|.|||.|+..+...+..... .-+.++ .....+.+.+..+.....+. ........||++||+
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k--~R~HFh----~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF 139 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGERK--RRLHFH----RFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEF 139 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCcccc--ccccHH----HHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeee
Confidence 44999999999999999999988733210 000000 01112222222222111000 011233689999999
Q ss_pred CcCCHHHHHHHHHHHHHhcCCceEEEEe
Q 021937 151 DAMTKDAQFALRRVIEKYTKNTRFALIC 178 (305)
Q Consensus 151 ~~l~~~~~~~l~~~l~~~~~~~~iil~~ 178 (305)
+--+....-.|-.+++..-++.+++++|
T Consensus 140 ~VtDI~DAMiL~rL~~~Lf~~GV~lvaT 167 (367)
T COG1485 140 EVTDIADAMILGRLLEALFARGVVLVAT 167 (367)
T ss_pred eecChHHHHHHHHHHHHHHHCCcEEEEe
Confidence 8877666666777777665555555554
No 337
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.91 E-value=0.00013 Score=71.24 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHH-------HHHHHhhhcc
Q 021937 60 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR-------QQIQDFASTQ 132 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~ 132 (305)
.-.+.+...+.+. ..++|.|.+||||||+++.+...+...++. ++.+. +.......+. ..+..+....
T Consensus 350 eQr~Av~~il~s~--~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~--V~~~A-pTGkAA~~L~e~tGi~a~TI~sll~~~ 424 (988)
T PRK13889 350 EQADALAHVTDGR--DLGVVVGYAGTGKSAMLGVAREAWEAAGYE--VRGAA-LSGIAAENLEGGSGIASRTIASLEHGW 424 (988)
T ss_pred HHHHHHHHHhcCC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCe--EEEec-CcHHHHHHHhhccCcchhhHHHHHhhh
Confidence 3334444444433 247899999999999999888777555443 22222 2111111111 1111111100
Q ss_pred cccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 133 SFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 133 ~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
......-.+..||||||+..++......|+..... ...++|++++.
T Consensus 425 ~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~ 470 (988)
T PRK13889 425 GQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDP 470 (988)
T ss_pred cccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence 00011123457999999999998877777765553 36788888753
No 338
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.91 E-value=0.00013 Score=59.24 Aligned_cols=23 Identities=43% Similarity=0.814 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021937 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++|.||+||||||+.+.+-+.+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 38999999999999999997765
No 339
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.90 E-value=0.0001 Score=58.06 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 57 AHRDIVDTIDRLTSEN-RLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 57 g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.|.+.+..+.+.+... ..+++++.+|+|+|||.++..++..+..
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 4677788888888776 5677999999999999999987776643
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.88 E-value=0.00026 Score=58.38 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021937 64 TIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 64 ~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
.|...+.++-+. .++++|+||+|||+++..++......+....++.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 445555555333 3899999999999999999776534444433333
No 341
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.88 E-value=0.00028 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+.|+||+|||||++.+.++...
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 348999999999999999999876
No 342
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=0.00033 Score=62.78 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=48.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHh--CCCCcccEEEeecCCCcChhHHHHHHHHhhhcc--ccc---C--------CCCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLY--GAQYHNMILELNASDDRGIDVVRQQIQDFASTQ--SFS---F--------GVKA 140 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~---~--------~~~~ 140 (305)
.++|.||+|+||||++..++..+. ..+....++..+.......+. +..+.... ++. . ....
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eq----L~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQ----LKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHH----HHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 488999999999999999988775 334455555544322111111 11111100 000 0 0112
Q ss_pred ceEEEEEeCCCcCC--HHHHHHHHHHHH
Q 021937 141 SVKLVLLDEADAMT--KDAQFALRRVIE 166 (305)
Q Consensus 141 ~~~vliiDe~~~l~--~~~~~~l~~~l~ 166 (305)
+..+|+||...... ......|..+++
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 36899999887654 334556777776
No 343
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.87 E-value=0.00014 Score=57.37 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=59.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCC--cChhHHHHHH-------HH-----hhhccc--ccC--
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDD--RGIDVVRQQI-------QD-----FASTQS--FSF-- 136 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i-------~~-----~~~~~~--~~~-- 136 (305)
..+.|.||+|+||||+++.++........ -+.++.... .........+ .. ...... +..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G---~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSG---EILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCc---EEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 45899999999999999999886532111 122222111 0111111111 10 000000 110
Q ss_pred --------CCCCceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 137 --------GVKASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 137 --------~~~~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
..-.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1125678999999 467888888899998887644 345666665544
No 344
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.85 E-value=0.00017 Score=57.71 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=35.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCcccchhhhcc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVNKIIPALQSR 191 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~~l~~~l~~r 191 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+.......+..|
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 4578999999 566788888899998887643 455666666654223333344
No 345
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=2e-05 Score=57.86 Aligned_cols=22 Identities=36% Similarity=0.853 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++|.|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=0.00025 Score=54.63 Aligned_cols=105 Identities=17% Similarity=0.295 Sum_probs=56.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcC--hhHHHHHHHH---h----hhcccccCCCCCceEEE
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRG--IDVVRQQIQD---F----ASTQSFSFGVKASVKLV 145 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~---~----~~~~~~~~~~~~~~~vl 145 (305)
..+.|.|+.|+||||+++.++..+... .--+.++...... .......+.- + .....+.......+.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 458999999999999999998865321 1112222211000 0000000000 0 00000000011236899
Q ss_pred EEeCC-CcCCHHHHHHHHHHHHHhcCC-ceEEEEecCCc
Q 021937 146 LLDEA-DAMTKDAQFALRRVIEKYTKN-TRFALICNQVN 182 (305)
Q Consensus 146 iiDe~-~~l~~~~~~~l~~~l~~~~~~-~~iil~~~~~~ 182 (305)
++||. ..++......+.+++.+.... ..+++++....
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99995 467788888888888865433 45666665543
No 347
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.84 E-value=6.7e-05 Score=65.57 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=25.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHhCC
Q 021937 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
+.+..++|+||+|+|||++++.+++.+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 445569999999999999999999987554
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=0.00022 Score=55.76 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=33.6
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l 184 (305)
.++.++++|| ...++......+.+++.+......+++++.+...+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 3478999999 56788888889999998775555667777665433
No 349
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.82 E-value=2.9e-05 Score=70.57 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=42.0
Q ss_pred CCccccccchHHHHHHHHHHh----c--CCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 50 QSLADVAAHRDIVDTIDRLTS----E--NRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~l~----~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
..|+++.|.++.++++...+. + .+.+.++|.||||+|||++++.+++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 457889999999998888772 2 33445899999999999999999998854
No 350
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=7.5e-05 Score=58.56 Aligned_cols=43 Identities=14% Similarity=0.320 Sum_probs=31.4
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCC-ceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKN-TRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~-~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+...+ ..+++++.+..
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 4578999999 5667888888999999876533 45666665543
No 351
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00016 Score=69.18 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=99.1
Q ss_pred ccccccc-hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCc-------ccEEEee--cCCCcChhHH
Q 021937 52 LADVAAH-RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYH-------NMILELN--ASDDRGIDVV 121 (305)
Q Consensus 52 ~~~~~g~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~ 121 (305)
++.++|+ ++.++.+.+.+......+-+|.|.||+|||.++..+++.+.....+ ..++.+. .+......++
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5677887 7778888888877766778999999999999999999998543221 1222222 1122333445
Q ss_pred HHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHH----HHHHHHHHhcC--CceEEEEec-----CCcccchhhhc
Q 021937 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQF----ALRRVIEKYTK--NTRFALICN-----QVNKIIPALQS 190 (305)
Q Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~----~l~~~l~~~~~--~~~iil~~~-----~~~~l~~~l~~ 190 (305)
...+........-. .++-|+++||+|.+.....+ ...+++...-. ...+|.+++ ....-+|++.+
T Consensus 265 E~rlk~l~k~v~~~----~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalEr 340 (898)
T KOG1051|consen 265 EERLKELLKEVESG----GGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALER 340 (898)
T ss_pred HHHHHHHHHHHhcC----CCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhh
Confidence 55555554322111 23689999999998643211 12222221111 244454443 11234789999
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHHH
Q 021937 191 RCTRFRFAPLEPVHVTERLKHVIEA 215 (305)
Q Consensus 191 r~~~i~~~~~~~~~~~~~l~~~~~~ 215 (305)
|++.+.++-|+.++...++.....+
T Consensus 341 rw~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 341 RWQLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred CcceeEeccCcccchhhhhhhhhhh
Confidence 9988888889888777777665554
No 352
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.81 E-value=0.00016 Score=56.95 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=34.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCccc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKI 184 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l 184 (305)
.++.++++|| ...++......+.+++.+......+++++.+...+
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 5578999999 56788888889999988765455677777665543
No 353
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.81 E-value=7.7e-05 Score=58.52 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=31.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4578999999 567888888888888876543 456667776654
No 354
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.79 E-value=0.00011 Score=54.79 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
+++++||+|+|||+.+..++.....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4899999999999999888887754
No 355
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00025 Score=57.57 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..+.|.||+||||||+.+.++-...
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3488999999999999999998653
No 356
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.78 E-value=0.00028 Score=54.87 Aligned_cols=105 Identities=22% Similarity=0.214 Sum_probs=58.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcc------cEEEeecCCCcChhHHHHHHHHhhhcccccC----------CC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHN------MILELNASDDRGIDVVRQQIQDFASTQSFSF----------GV 138 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~ 138 (305)
..+.|.||.|+||||+++.++.......-.. .+..+..........+.+.+... ....+.. ..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-~~~~LS~G~~~rv~laral 106 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP-WDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc-CCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999988753211100 01111110001111222222110 0011111 11
Q ss_pred CCceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 139 KASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 139 ~~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
-.++.++++|| ...++......+.+++.+. ...+++++.+..
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 24578999999 4567888888899988876 355666776643
No 357
>PF13245 AAA_19: Part of AAA domain
Probab=97.76 E-value=0.00012 Score=48.72 Aligned_cols=25 Identities=48% Similarity=0.834 Sum_probs=17.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
+.+++.||||+|||+++...+..+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4477799999999965555555443
No 358
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.76 E-value=9.2e-05 Score=63.80 Aligned_cols=135 Identities=20% Similarity=0.266 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe-ecCCCcChhHHHHHHHHhhhcccccCC
Q 021937 60 DIVDTIDRLTSENRLPH-LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL-NASDDRGIDVVRQQIQDFASTQSFSFG 137 (305)
Q Consensus 60 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (305)
..+..++.++++-+..+ ++|+|||+||||.+...+.+.+ ...++.+ |..+.-...
T Consensus 247 ~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl-----~GkViSf~Ns~ShFWLq------------------ 303 (432)
T PF00519_consen 247 SFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-----KGKVISFVNSKSHFWLQ------------------ 303 (432)
T ss_dssp HHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHH-----TSEEE-GGGTTSCGGGG------------------
T ss_pred HHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHh-----CCEEEEecCCCCccccc------------------
Confidence 45567788887755555 8999999999999999999988 3334432 222211111
Q ss_pred CCCceEEEEEeCCCcCCHHHH-HHHHHHHHHhc-------------CCceEEEEecCC---cccchhhhcceeEEEecCC
Q 021937 138 VKASVKLVLLDEADAMTKDAQ-FALRRVIEKYT-------------KNTRFALICNQV---NKIIPALQSRCTRFRFAPL 200 (305)
Q Consensus 138 ~~~~~~vliiDe~~~l~~~~~-~~l~~~l~~~~-------------~~~~iil~~~~~---~~l~~~l~~r~~~i~~~~~ 200 (305)
.-....+-+|||+-.-.=+-. ..+.+.++..+ +-.++++++|-. +.-..-|.+|.+.+.|+.+
T Consensus 304 PL~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n~ 383 (432)
T PF00519_consen 304 PLADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPNP 383 (432)
T ss_dssp GGCT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S-
T ss_pred chhcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcCCc
Confidence 111247889998754332222 23556666432 123466666532 2335677899888777653
Q ss_pred -------------CHHHHHHHHHHHHHHcC
Q 021937 201 -------------EPVHVTERLKHVIEAEG 217 (305)
Q Consensus 201 -------------~~~~~~~~l~~~~~~~~ 217 (305)
+......++.+...+..
T Consensus 384 ~P~d~~G~P~y~ltd~~WksFF~rlw~~Ld 413 (432)
T PF00519_consen 384 FPLDENGNPVYELTDANWKSFFRRLWSQLD 413 (432)
T ss_dssp S-BSTTSSBSS---HHHHHHHHHHHTCCCT
T ss_pred cccCCCCCeeEEeccChHHHHHHHHHHhcC
Confidence 34556666666554333
No 359
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.76 E-value=0.00023 Score=58.49 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcc
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHN 105 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~ 105 (305)
.+++.|++|+|||+++..++.....++...
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~ 55 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSV 55 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 389999999999999866666554444333
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.76 E-value=0.00047 Score=53.38 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=63.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC-CcChhHH-----------------------------HHHH
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVV-----------------------------RQQI 125 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------------------------~~~i 125 (305)
.+.+++++|.||||+|..++-+....+....++.+--.. ..+.... .+.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 478888899999999999999887777766555543322 1111100 0111
Q ss_pred HHhhhcccccCCCCCceEEEEEeCCCcCCHH---HHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 126 QDFASTQSFSFGVKASVKLVLLDEADAMTKD---AQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
..+.... .....++||+||+-....- ..+.+.++++..|++.-+|+|++..+
T Consensus 87 ~~a~~~l-----~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 87 QHAKEML-----ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHH-----hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1111100 1234789999997633211 13467888888888999999997653
No 361
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.75 E-value=0.00014 Score=63.16 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 72 NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 72 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
+++...+|+||+|+|||++++.+++.+....
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5556799999999999999999999886543
No 362
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.75 E-value=0.00026 Score=57.28 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=38.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCCcccchhhhcceeEEEecCCCH
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQVNKIIPALQSRCTRFRFAPLEP 202 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~~l~~~l~~r~~~i~~~~~~~ 202 (305)
.++.++++|| ...++......+.+++.+.. ....+++++.+...+.. . .++.+.+|+.
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~--~~~~~~~~~~ 203 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---A--RELDLGPFAA 203 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---C--cEEeecCccC
Confidence 5678999999 56788888888888887643 34567777776655443 2 3345555443
No 363
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.73 E-value=0.00011 Score=58.22 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=30.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+.
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4578999999 567888888888888886543 45566666554
No 364
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=0.00088 Score=54.17 Aligned_cols=41 Identities=12% Similarity=0.309 Sum_probs=30.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQ 180 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~ 180 (305)
..+.+|+-|| -..++.+..+.++.++.+... +..+|++|.+
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 5678999999 577888888888888887643 4466667665
No 365
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=0.00014 Score=62.05 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=35.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCc-eEEEEecCCcccchhhhcc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNT-RFALICNQVNKIIPALQSR 191 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~-~iil~~~~~~~l~~~l~~r 191 (305)
.++.++|+|| ...+++.....+.+++....... ..|+++++.......+-.|
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence 6678999999 57788999999999998877654 4444444433333333334
No 366
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.73 E-value=0.00029 Score=55.90 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=24.3
Q ss_pred eEEEEEeCCCcCCH-HHHHHHHHHHHHhcCCceEEEEec
Q 021937 142 VKLVLLDEADAMTK-DAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 142 ~~vliiDe~~~l~~-~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
..++++||+|.+.. .....+..++...+....+++++.
T Consensus 130 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 168 (201)
T smart00487 130 VDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSA 168 (201)
T ss_pred CCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEec
Confidence 45899999999986 444555555555544455555443
No 367
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00021 Score=53.07 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Q 021937 73 RLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 73 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..|+++++|-||+||||++..++...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 35779999999999999999999876
No 368
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00032 Score=55.02 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=36.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcceeE
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTR 194 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~~~ 194 (305)
.++.++++|| ...++-.....|.+++.......+.++.+++...-.+++-.|.-+
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrviv 205 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIV 205 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEE
Confidence 6688999999 455666667788888887766555555555544444566666543
No 369
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.72 E-value=0.0004 Score=68.47 Aligned_cols=101 Identities=13% Similarity=0.204 Sum_probs=60.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHH-------HHHhhhcccccCCCCCceEEEEE
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQ-------IQDFASTQSFSFGVKASVKLVLL 147 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~~~~~~~~vlii 147 (305)
...++.|++|+||||+++.+...+...++. ++.+.. .......+.+. +..+..........-....||||
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~--V~g~Ap-TgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVI 474 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYR--VVGGAL-AGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVL 474 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCe--EEEEcC-cHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEE
Confidence 458999999999999999999887655543 333222 21111222111 11110000000011123579999
Q ss_pred eCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 148 DEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 148 De~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
||+..++......|+...... ..++|++++.
T Consensus 475 DEAsMv~~~~m~~Ll~~~~~~--garvVLVGD~ 505 (1102)
T PRK13826 475 DEAGMVASRQMALFVEAVTRA--GAKLVLVGDP 505 (1102)
T ss_pred ECcccCCHHHHHHHHHHHHhc--CCEEEEECCH
Confidence 999999988888887776543 5788888853
No 370
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=0.00014 Score=57.26 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCC--ceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKN--TRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~--~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+.... ..+++++.+..
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4578999999 5778888888999988876543 55666665543
No 371
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.71 E-value=0.00018 Score=66.02 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=32.5
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
.+|+++++||+ ..++++....+++.+++.-+...+|-++.+
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 66899999996 567888899999999876556777766654
No 372
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.71 E-value=0.0013 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|+||+|+|||++++.+.+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348999999999999999998864
No 373
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.70 E-value=0.00054 Score=54.98 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++++||+|+||||++++++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3799999999999999999988753
No 374
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00039 Score=60.80 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
..++|+||+|+||||++..++..+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998753
No 375
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.70 E-value=0.00022 Score=56.00 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=65.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC-CcChhHHHH------------------------------
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD-DRGIDVVRQ------------------------------ 123 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------------------ 123 (305)
..+.++|++|.||||+|..++-+....+....++.+--.. ..+.....+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 4589999999999999999999887776666555553332 111111111
Q ss_pred HHHHhhhcccccCCCCCceEEEEEeCCCcCCHH---HHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 124 QIQDFASTQSFSFGVKASVKLVLLDEADAMTKD---AQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 124 ~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.+..+.... ....+++||+||+-....- ..+.+.++++..|...-+|+|++...
T Consensus 103 ~~~~a~~~l-----~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 103 GWEEAKRML-----ADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHH-----hCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111110000 1244789999997554321 24568888888888999999997653
No 376
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0003 Score=62.81 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=41.4
Q ss_pred CCCccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021937 49 PQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 49 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
..+++.+...+...+.+.+.+.... .-++++||+|+||||+...+.+.++....
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~~~~ 287 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNTPER 287 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcCCCc
Confidence 3356677667777777777776553 23899999999999999999999976544
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.68 E-value=0.0003 Score=58.90 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=27.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
++++|+||+|||+++..++......+....++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 89999999999999999877654455555565554
No 378
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00094 Score=53.54 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=25.1
Q ss_pred HhcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021937 69 TSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 69 l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
+-+....+.++.||||+||||+.+-+++.+.
T Consensus 132 ly~~g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 132 LYQNGWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred HHhcCceeeEEecCCCCChHHHHHHHHHHhh
Confidence 3344445589999999999999999999874
No 379
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.68 E-value=0.00034 Score=56.64 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=30.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 143 GNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 5678999999 566788888888888886543 345666665543
No 380
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.67 E-value=0.00055 Score=58.87 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=31.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++....
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 6678999999 567888888999999987654 345666665443
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.66 E-value=0.00039 Score=54.47 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=26.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
++++|++|+|||+++..++..+...+....++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~ 36 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA 36 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 6899999999999999999988665544444443
No 382
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=0.00037 Score=55.61 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 5578999999 566778888888888886543 456667776654
No 383
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.66 E-value=0.00013 Score=61.59 Aligned_cols=51 Identities=25% Similarity=0.415 Sum_probs=37.7
Q ss_pred CccccccchHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHHhCC
Q 021937 51 SLADVAAHRDIVDTIDRLTSEN--RLPHLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
+++++.-.....+.+.+.+... ....++++|++|+||||++.++...+...
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 5667766665556666665543 23459999999999999999999987544
No 384
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.66 E-value=0.00071 Score=54.28 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=21.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++|+||.|+||||+++.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 448999999999999999998654
No 385
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.65 E-value=0.00044 Score=56.71 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 64 ~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
.|...+.++-+.. +.++|+||+|||+++..++......+....++..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3455555553333 7999999999999999999877555544444443
No 386
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.65 E-value=0.0007 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++++|+||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999987
No 387
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.65 E-value=0.00092 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~ 96 (305)
..++|+||.|+||||+++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4489999999999999999984
No 388
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.63 E-value=0.00034 Score=60.08 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=31.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...+++.....+.+++.+... ...+++++....
T Consensus 141 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 141 HQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 5678999999 577888888899998887643 345666665543
No 389
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.62 E-value=0.00077 Score=58.76 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=31.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...+++.....+.+++.+... ...+++++...+
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 5678999999 577888889999999987643 345555655443
No 390
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.61 E-value=0.00012 Score=60.38 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999988
No 391
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.61 E-value=0.00025 Score=59.08 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQY 103 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~ 103 (305)
++|+|+||+||||+++.+++.+...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~ 28 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNI 28 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999998854443
No 392
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00067 Score=54.96 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=31.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 5678999999 467888888889999887543 345666665543
No 393
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.59 E-value=0.00033 Score=57.07 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5678999999 567788888888888886543 445666666643
No 394
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.59 E-value=0.00023 Score=58.65 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=32.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5678999999 577888888888888876643 445666766544
No 395
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.59 E-value=0.0012 Score=53.88 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCCCcccEE
Q 021937 63 DTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMIL 108 (305)
Q Consensus 63 ~~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 108 (305)
..|...+.++-++. ++++|+||+|||+++..++......+....++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34555565543333 78999999999999999998875544443333
No 396
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.0003 Score=57.05 Aligned_cols=43 Identities=12% Similarity=0.325 Sum_probs=33.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+......+++++.+..
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~ 190 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE 190 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 6678999999 567888889999999987765555666665543
No 397
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.58 E-value=0.0017 Score=54.12 Aligned_cols=186 Identities=20% Similarity=0.193 Sum_probs=96.8
Q ss_pred CccccccchHHHHHHHHHHh-cCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhh
Q 021937 51 SLADVAAHRDIVDTIDRLTS-ENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 129 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 129 (305)
....+++-+...+.+...-- ........++|.+|.|||+.++.+++.. .....++.+... ....+...+....
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~~~l~~~~p~~--~a~~~i~~i~~~~ 143 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----PNALLIEADPSY--TALVLILIICAAA 143 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----ccceeecCChhh--HHHHHHHHHHHHH
Confidence 34456665554332222211 1222358999999999999999998763 222222222221 1111111111100
Q ss_pred hccc----------ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC--------Ccccchhhhcc
Q 021937 130 STQS----------FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ--------VNKIIPALQSR 191 (305)
Q Consensus 130 ~~~~----------~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~--------~~~l~~~l~~r 191 (305)
.... ......+..+.|++||++.+.....+.+..+.+... .-++++++. .......+.+|
T Consensus 144 ~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~vLvG~prL~~~l~~~~~~~~rl~sr 221 (297)
T COG2842 144 FGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVVLVGMPRLFKVLRRPEDELSRLYSR 221 (297)
T ss_pred hcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC--ceEEEecChHHHhccccchHHHHHHHHH
Confidence 0000 000124557899999999999999999999888764 333344322 11222333343
Q ss_pred eeE---EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 021937 192 CTR---FRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM 248 (305)
Q Consensus 192 ~~~---i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 248 (305)
..+ +...-++..+..++....+ -....+.+..+.....|++|.+-..+.-...
T Consensus 222 v~v~~~~~~~~~d~d~~~~~~~~~l----~~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 222 VRVGKLLGEKFPDADELAEIAALVL----PTEDELVLMQVIKETEGNIRRLDKILAGAVG 277 (297)
T ss_pred hhhHhhhhhhhhhhHHHHHHHHhhC----ccchHHHHHHHHHhcchhHhHHHHHHhhhhh
Confidence 211 1111222233333333221 1256677777888889999988877754443
No 398
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00077 Score=54.51 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=33.8
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcC--CceEEEEecCCcccchhhhcc
Q 021937 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK--NTRFALICNQVNKIIPALQSR 191 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~~l~~~l~~r 191 (305)
.++.++++||. -.++...|..+++++.+... +..+++++.+.. +...+-.|
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdR 211 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDR 211 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhh
Confidence 66889999995 55667778888888876543 345667765542 33444444
No 399
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=0.0011 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021937 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++++|++|+||||+++.+++.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0011 Score=57.71 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=29.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
.++|+||+|+||||++..++..+...+....++..+...
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 478999999999999999998876555555555555443
No 401
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.58 E-value=0.0014 Score=51.45 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.5
Q ss_pred eEEEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCCc
Q 021937 142 VKLVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (305)
Q Consensus 142 ~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~ 182 (305)
+.++++|| ...++......+.+.+.+.. ....+|+++.+..
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 79999999 56788888888888887654 2455666776654
No 402
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.58 E-value=0.00043 Score=58.09 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=36.5
Q ss_pred CccccccchHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 51 SLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 51 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
+++++--.+...+.+..++.... ..++++|++|+||||+++++...+..
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 45555556666677777765442 35899999999999999999888754
No 403
>PRK06762 hypothetical protein; Provisional
Probab=97.58 E-value=0.0029 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021937 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.++++|++|+||||+++.+++.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 404
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.57 E-value=0.00076 Score=55.75 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 64 TIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 64 ~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
.|.+.+.++-++. ++++|+||+|||+++..++......+....++..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 4555566554433 8999999999999999887664444444444443
No 405
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.57 E-value=0.00056 Score=60.83 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
.+.++|++|+||||++..++..+...+....++..+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 3789999999999999999998876665555554443
No 406
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.57 E-value=0.00057 Score=55.32 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 113 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (305)
+.++||||+|||+++..++......+.. ++.++..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~--v~yi~~e 49 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKK--VVYIDTE 49 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCe--EEEEECC
Confidence 7999999999999999998877554433 4444443
No 407
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.57 E-value=0.0069 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
.+++++|++|+||||+++++...+.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4599999999999999999998874
No 408
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.57 E-value=0.00055 Score=60.16 Aligned_cols=40 Identities=33% Similarity=0.595 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 63 DTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 63 ~~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
..|.+.+.++-.+. ++++|+||+|||+++..++..+...+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g 110 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG 110 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 45666666554333 79999999999999999998775443
No 409
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.56 E-value=7.2e-05 Score=59.78 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=30.8
Q ss_pred ceEEEEEeCCCcCCHHHH------HHHHHHHHHhc-CCceEEEEecCCcccchhhhcce
Q 021937 141 SVKLVLLDEADAMTKDAQ------FALRRVIEKYT-KNTRFALICNQVNKIIPALQSRC 192 (305)
Q Consensus 141 ~~~vliiDe~~~l~~~~~------~~l~~~l~~~~-~~~~iil~~~~~~~l~~~l~~r~ 192 (305)
...+|+|||++...+... ....+.+.... ....++++|.+...+++.++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 368999999998753221 12334444333 24568888988888888888765
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.56 E-value=0.00024 Score=60.27 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCC-C-CcccEEEeec
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGA-Q-YHNMILELNA 112 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~-~-~~~~~~~~~~ 112 (305)
.++|+||+|+||||++..++..+... + ....++..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 48899999999999999999887543 2 5555555543
No 411
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.56 E-value=0.0003 Score=57.51 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=31.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5678999999 567888888889998886643 44566666554
No 412
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.56 E-value=0.00099 Score=54.11 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=31.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+.
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5678999999 567888888889998887642 34566666654
No 413
>PRK14532 adenylate kinase; Provisional
Probab=97.55 E-value=0.0037 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 021937 76 HLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++++.|+||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999876
No 414
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.55 E-value=0.00099 Score=54.58 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCC-ceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKN-TRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~-~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+.... ..+|+++.+..
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~ 203 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5678999999 5678888888888888765433 45666666543
No 415
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.55 E-value=0.00027 Score=56.82 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=31.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++....
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 5578999999 467888888888888887643 345666666544
No 416
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.55 E-value=0.0019 Score=66.78 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC--CCCcccEEEeecCCCcChhHHHH------HHHHhhh
Q 021937 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG--AQYHNMILELNASDDRGIDVVRQ------QIQDFAS 130 (305)
Q Consensus 59 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~ 130 (305)
+.-...+...+.+. ...++|.|.+|+||||+++.+...+.. ......++-+.+ .......+.+ .+..+..
T Consensus 970 ~~Q~~Av~~il~s~-dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAP-TgrAAk~L~e~Gi~A~TI~s~L~ 1047 (1747)
T PRK13709 970 SGQRAATRMILEST-DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGP-THRAVGEMRSAGVDAQTLASFLH 1047 (1747)
T ss_pred HHHHHHHHHHHhCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECC-cHHHHHHHHhcCcchhhHHHHhc
Confidence 33344555555443 245899999999999999999887642 111122333322 2111111111 1111111
Q ss_pred ccc-cc---CCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 131 TQS-FS---FGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 131 ~~~-~~---~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
... +. ........|+||||+-.++......|++.+... ..++|++++.
T Consensus 1048 ~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~--garvVLVGD~ 1099 (1747)
T PRK13709 1048 DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAG--GGRAVSSGDT 1099 (1747)
T ss_pred ccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhcC--CCEEEEecch
Confidence 100 00 011123589999999999988888888877643 5678888864
No 417
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.55 E-value=0.00042 Score=57.03 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=32.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++....
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 5678999999 567788888889998887643 456666766544
No 418
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.55 E-value=0.0017 Score=56.82 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=22.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
..++++||+|+||||+++++...+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 45899999999999999999988753
No 419
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.55 E-value=0.00057 Score=61.73 Aligned_cols=41 Identities=34% Similarity=0.613 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 62 VDTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 62 ~~~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
+..|.+.+.++-.+. ++|+|+||+|||+++..++......+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g 108 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAG 108 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 346667776654333 79999999999999999998775433
No 420
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.54 E-value=0.00047 Score=56.22 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=31.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 153 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5678999999 567788888889888887643 345666665543
No 421
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00024 Score=56.23 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=30.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
-++.||++|| .-.|++-+...+-+++.+...+..++++|...
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence 4578999999 44556666667777777777777777777554
No 422
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.54 E-value=0.00094 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+..++|||.-|||||+|.-.+...+
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcC
Confidence 4459999999999999999998654
No 423
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.54 E-value=0.001 Score=55.99 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=29.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA 112 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 112 (305)
.+.++||+|+||||++..++..+...+....++..+.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3788899999999999999998876665555555443
No 424
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0008 Score=55.30 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=34.7
Q ss_pred CCceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCC-ceEEEEecCCccc
Q 021937 139 KASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKN-TRFALICNQVNKI 184 (305)
Q Consensus 139 ~~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~-~~iil~~~~~~~l 184 (305)
..++.++++|| ...++...+..+++++.+.... ..+++++.+....
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV 202 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh
Confidence 36788999999 7888889999999999977654 4455566555433
No 425
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.53 E-value=0.0015 Score=56.10 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=27.6
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 64 TIDRLTS-ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 64 ~l~~~l~-~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
.|...+. ++-++. +.|+||+|+|||+++..++......+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g 83 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAG 83 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4455555 443333 78999999999999988877765443
No 426
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=97.52 E-value=0.00099 Score=58.72 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=45.1
Q ss_pred CceEEEEEeCCCcCCHHHHHHHHHHHHHh-----cCCceEEEEecCCcccchhhhcce-eEE--EecCCCHHHHH
Q 021937 140 ASVKLVLLDEADAMTKDAQFALRRVIEKY-----TKNTRFALICNQVNKIIPALQSRC-TRF--RFAPLEPVHVT 206 (305)
Q Consensus 140 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----~~~~~iil~~~~~~~l~~~l~~r~-~~i--~~~~~~~~~~~ 206 (305)
.++.|+|+||+|.+..+.-..|++-++.. ++.+-+.++|..+.++++.+.+.+ ..+ -+..++..+.+
T Consensus 254 kPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL~QLGnrIQHaLRAfTP~DqK 328 (502)
T PF05872_consen 254 KPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPDDVLGQLGNRIQHALRAFTPKDQK 328 (502)
T ss_pred CceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCCCCHHHHHhhhhHHHHHHhcCCHhHHH
Confidence 55668899999999877766666666642 456778889988888877766654 222 24445555444
No 427
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.52 E-value=0.00043 Score=57.11 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=30.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~ 181 (305)
..+.++++|| ...++-..+-.+++++.+... +..+|++..+.
T Consensus 155 Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 155 QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 5678999999 566777788888888887653 34456666543
No 428
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.52 E-value=0.0012 Score=53.71 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=31.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+.
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5678999999 566788888899998887543 45566666554
No 429
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.52 E-value=0.00057 Score=55.47 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=31.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5678999999 567888888889998887643 345666665543
No 430
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.51 E-value=0.0011 Score=54.11 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=33.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCcc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~~ 183 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+...
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 5678999999 567888888899999887643 4567777766543
No 431
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.51 E-value=0.0014 Score=59.34 Aligned_cols=143 Identities=19% Similarity=0.160 Sum_probs=88.4
Q ss_pred ccccchHHHHHHHHHHhcCC------CC------eEEEECCCCCcHHHHHHHHHHHHh----CCCCcccEEEeecCCCcC
Q 021937 54 DVAAHRDIVDTIDRLTSENR------LP------HLLLYGPPGTGKTSTILAVARKLY----GAQYHNMILELNASDDRG 117 (305)
Q Consensus 54 ~~~g~~~~~~~l~~~l~~~~------~~------~~ll~G~~G~GKT~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~ 117 (305)
.+.|++.+++.+.-++-++. +. ++++.|.|.+.|+.|++.+.+... -.|.+..-+.++.+-...
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence 46789999888877776531 11 289999999999999999988652 122233333333222111
Q ss_pred hhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHh-------------cCCceEEEEecCCc--
Q 021937 118 IDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKY-------------TKNTRFALICNQVN-- 182 (305)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~iil~~~~~~-- 182 (305)
.+.-...++..+ ..-+.++|++|||+|+++.-..-++...++.. ++.+.++.++|...
T Consensus 382 ~eTGERRLEAGA-------MVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~ 454 (818)
T KOG0479|consen 382 QETGERRLEAGA-------MVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQ 454 (818)
T ss_pred cccchhhhhcCc-------eEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccc
Confidence 111112222111 11234789999999999988888888888853 34566666665321
Q ss_pred -----------ccchhhhcceeE--EEecCCCHH
Q 021937 183 -----------KIIPALQSRCTR--FRFAPLEPV 203 (305)
Q Consensus 183 -----------~l~~~l~~r~~~--i~~~~~~~~ 203 (305)
.+++++.+||.. +.+...+..
T Consensus 455 Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~ 488 (818)
T KOG0479|consen 455 YDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDAD 488 (818)
T ss_pred cCCCCChhhccCCcHHHHhhhcEEEEEeccccch
Confidence 468899999843 444444443
No 432
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0068 Score=52.78 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=37.8
Q ss_pred eeEEEecCCCHHHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHcCCCHHHHHHHH
Q 021937 192 CTRFRFAPLEPVHVTERLKHVIEAEGL--DV-TEGGLAALVRLCNGDMRKALNIL 243 (305)
Q Consensus 192 ~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~-~~~~~~~l~~~~~g~~r~~~~~l 243 (305)
+..+++++++.+|...++..++++.=+ ++ .++...++.=.++||++....++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lc 457 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLC 457 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHH
Confidence 566889999999999999888765311 23 36677888888999995444433
No 433
>PRK06696 uridine kinase; Validated
Probab=97.51 E-value=0.00022 Score=58.43 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhc---CCCCeEEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 58 HRDIVDTIDRLTSE---NRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 58 ~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
+.+.+++|...+.. ..+..+.+.|++|+||||+++.+++.+...+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g 50 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRG 50 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34566667666643 2233378999999999999999999985443
No 434
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.50 E-value=0.0006 Score=55.67 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=33.0
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+......+++++.+..
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 193 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMD 193 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 5678999999 567788888899999987665555666666544
No 435
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.50 E-value=0.00029 Score=65.45 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=28.9
Q ss_pred CceEEEEEeCCC-cCCHHHHHHHHHHHHHhcCCceEEEEec
Q 021937 140 ASVKLVLLDEAD-AMTKDAQFALRRVIEKYTKNTRFALICN 179 (305)
Q Consensus 140 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~iil~~~ 179 (305)
.++.++++||+- .++.+....+.+.+.+..++..+|+++.
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 667899999964 4677777888888887655555555554
No 436
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.50 E-value=0.0026 Score=55.84 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
.++++||+|+||||+++++.+.+..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998853
No 437
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.49 E-value=0.0014 Score=53.06 Aligned_cols=43 Identities=14% Similarity=0.341 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5678999999 567888888889998876643 455666666543
No 438
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0024 Score=55.66 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCC
Q 021937 62 VDTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASD 114 (305)
Q Consensus 62 ~~~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (305)
+.++.+.+.++-.+. ++|-|.||.|||||+-.++..+...+ .++++++..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE 130 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE 130 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc
Confidence 456777777764444 88999999999999999999885543 456665543
No 439
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00099 Score=58.88 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=47.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH-hCCCCcccEEEeecCCCcChhHHHHHHHHhhhccc--ccC----------CCCCceE
Q 021937 77 LLLYGPPGTGKTSTILAVARKL-YGAQYHNMILELNASDDRGIDVVRQQIQDFASTQS--FSF----------GVKASVK 143 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~----------~~~~~~~ 143 (305)
+++.||+|+||||++..++... ...+....++..+.........+ ........ +.. .......
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQL----k~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL----KRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHH----HHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 7899999999999999999765 33344444444443221111111 11111100 000 0113468
Q ss_pred EEEEeCCCcCC--HHHHHHHHHHHHH
Q 021937 144 LVLLDEADAMT--KDAQFALRRVIEK 167 (305)
Q Consensus 144 vliiDe~~~l~--~~~~~~l~~~l~~ 167 (305)
+|+||=+.+.. ......|..+++.
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHh
Confidence 89999766553 4556666666654
No 440
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.48 E-value=2.3e-05 Score=63.38 Aligned_cols=22 Identities=55% Similarity=0.801 Sum_probs=19.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVAR 96 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~ 96 (305)
..++|||+||+||||+|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 3489999999999999999863
No 441
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.48 E-value=0.0028 Score=64.88 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC--CCCcccEEEeecCCCcChhHHH------HHHHHhhh
Q 021937 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG--AQYHNMILELNASDDRGIDVVR------QQIQDFAS 130 (305)
Q Consensus 59 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~ 130 (305)
+.-.+.+...+.+.. ..++|.|.+|+||||+++.+...+.. ......++-+. +.......+. ..+..+..
T Consensus 838 ~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glA-PTgkAa~~L~e~Gi~A~TIasfL~ 915 (1623)
T PRK14712 838 SGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLG-PTHRAVGEMRSAGVDAQTLASFLH 915 (1623)
T ss_pred HHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEe-chHHHHHHHHHhCchHhhHHHHhc
Confidence 333445555554432 35899999999999999888776532 11112233332 2211111111 11111111
Q ss_pred ccc-c---cCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 131 TQS-F---SFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 131 ~~~-~---~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
... + ......+..++||||+-.++......|+.+++. ...++|++++.
T Consensus 916 ~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~ 967 (1623)
T PRK14712 916 DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDT 967 (1623)
T ss_pred cccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcch
Confidence 100 0 000112368999999999998888888888764 25678888864
No 442
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.48 E-value=0.0021 Score=52.23 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=58.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEE---------------EeecCCCcChhHHHHHHHHhhhcccccCCCCC
Q 021937 76 HLLLYGPPGTGKTSTILAVARKLYGAQYHNMIL---------------ELNASDDRGIDVVRQQIQDFASTQSFSFGVKA 140 (305)
Q Consensus 76 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (305)
.++++|++|+||||++..+........+..... .+..-+..+...++..........
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~-------- 78 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA-------- 78 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCC--------
Confidence 389999999999999999998765533222111 112223334444444444433322
Q ss_pred ceEEEEEeCCC-cCCHHHHHHHHHHHHHhc-CCceEEEEecCCccc
Q 021937 141 SVKLVLLDEAD-AMTKDAQFALRRVIEKYT-KNTRFALICNQVNKI 184 (305)
Q Consensus 141 ~~~vliiDe~~-~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~~l 184 (305)
...+++.|... .-..+....+...+.... ....++++.+..+..
T Consensus 79 ~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 79 NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 25677777665 333445555665555544 357788888765543
No 443
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.48 E-value=0.0016 Score=52.11 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=60.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhcccccCCCCCceEEEEEeCCCcCCHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKD 156 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 156 (305)
++|.|+.|+|||+..+.+....... . +. .....+. ...+.. .-++.+||++.+.+.
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d-----~--~~--~~~~kd~-~~~l~~--------------~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSD-----S--IN--DFDDKDF-LEQLQG--------------KWIVELDELDGLSKK 110 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccC-----c--cc--cCCCcHH-HHHHHH--------------hHheeHHHHhhcchh
Confidence 7899999999999999996553111 1 11 1111222 222221 368999999999877
Q ss_pred HHHHHHHHHHH---------------hcCCceEEEEecCCcccch-hhhcceeEEEecC
Q 021937 157 AQFALRRVIEK---------------YTKNTRFALICNQVNKIIP-ALQSRCTRFRFAP 199 (305)
Q Consensus 157 ~~~~l~~~l~~---------------~~~~~~iil~~~~~~~l~~-~l~~r~~~i~~~~ 199 (305)
..+.|-.++-. .+....++.++|...-+.. +=-+|+..+.+..
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 77766666542 1234456777777654433 3345676666655
No 444
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.48 E-value=0.0014 Score=56.34 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++....
T Consensus 152 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 152 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 5678999999 577888888889998887643 345666665543
No 445
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.0005 Score=55.35 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=30.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+++++++.
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 5578999999 577888888899999887643 34455555443
No 446
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0032 Score=57.31 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
..+.|+||+|+||||++..++..+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34889999999999999999887643
No 447
>PRK04328 hypothetical protein; Provisional
Probab=97.47 E-value=0.0016 Score=54.25 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEe
Q 021937 64 TIDRLTSENRLP--HLLLYGPPGTGKTSTILAVARKLYGAQYHNMILEL 110 (305)
Q Consensus 64 ~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 110 (305)
.|.+.+.++-++ .++++|+||+|||+++..++......+....++.+
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 455556555333 38999999999999999887764444444444443
No 448
>PRK06547 hypothetical protein; Provisional
Probab=97.46 E-value=0.00029 Score=55.06 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=24.6
Q ss_pred HhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021937 69 TSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 69 l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.......+.+.|++|+||||+++.+++.+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 444444558899999999999999999986
No 449
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00059 Score=56.28 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=31.8
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5678999999 567888888899999887642 455666666543
No 450
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.46 E-value=0.0011 Score=56.77 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..++++||+|+|||+++..+++.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhC
Confidence 348999999999999999999987
No 451
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00057 Score=55.80 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5678999999 577888888888888876543 345666666544
No 452
>PRK10908 cell division protein FtsE; Provisional
Probab=97.46 E-value=0.00066 Score=55.53 Aligned_cols=43 Identities=12% Similarity=0.302 Sum_probs=31.4
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5678999999 567888888888888887643 455666666543
No 453
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.45 E-value=0.0013 Score=56.30 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=34.4
Q ss_pred Ccccccc----chHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhC
Q 021937 51 SLADVAA----HRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 100 (305)
Q Consensus 51 ~~~~~~g----~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 100 (305)
++++++. .+...+.|..++... .+++++|++|+||||+++++...+..
T Consensus 107 tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 107 TLDDYVEAGIMTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4455542 234455666666543 45999999999999999999988743
No 454
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.45 E-value=0.0012 Score=53.55 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=31.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+.
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5678999999 567788888888888876542 45566676654
No 455
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=9.2e-05 Score=55.97 Aligned_cols=22 Identities=41% Similarity=0.918 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++++|+||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999876
No 456
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00054 Score=56.78 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=30.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++..... ...+++++.+..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 5678999999 457788888888888876543 445666665543
No 457
>PRK10867 signal recognition particle protein; Provisional
Probab=97.45 E-value=0.0015 Score=58.38 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=28.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCC-CCcccEEEeecC
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGA-QYHNMILELNAS 113 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~ 113 (305)
++++|++|+||||++..++..+... +....++..+..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 7899999999999999999988665 555555555443
No 458
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.44 E-value=0.0003 Score=57.73 Aligned_cols=35 Identities=40% Similarity=0.642 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHH
Q 021937 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 62 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
.+.+...+.... ..+++||||||||+++..+...+
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344444444332 37999999999999888888877
No 459
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.44 E-value=0.0018 Score=52.65 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.6
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 5678999999 567788888888888876432 345666665543
No 460
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.44 E-value=0.00026 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+.+.|++|+||||+++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 461
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.43 E-value=0.0057 Score=55.79 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=84.5
Q ss_pred eEEEEEeCCCcCC--HHHHHHHHHHHHHhcCCc-eEEEEecCCcccchhhhcceeEEEecCCCHHHHHHHHHHHHHHcCC
Q 021937 142 VKLVLLDEADAMT--KDAQFALRRVIEKYTKNT-RFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGL 218 (305)
Q Consensus 142 ~~vliiDe~~~l~--~~~~~~l~~~l~~~~~~~-~iil~~~~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 218 (305)
+.++++.|+|.+. +.....|.++........ .+|+++ ....++..+.+-+.++.++-|+.+|+.+++...+...+.
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~~ 160 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-SELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSLNI 160 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-CCCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcCC
Confidence 5799999999984 334455555544333222 344444 345688888888899999999999999999988877788
Q ss_pred CCCHHHHHHHHHHcCCC-HHHHHHHHHHHhhccCccCHHHHHh
Q 021937 219 DVTEGGLAALVRLCNGD-MRKALNILQSTHMASQQITEEAVYL 260 (305)
Q Consensus 219 ~~~~~~~~~l~~~~~g~-~r~~~~~l~~~~~~~~~i~~~~v~~ 260 (305)
.++++.++.+++.+.|- ...+.+.+..+....+.++.+++..
T Consensus 161 ~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (489)
T CHL00195 161 KIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIPL 203 (489)
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHHH
Confidence 89999999999998874 4455555555544556677766543
No 462
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.43 E-value=0.00096 Score=53.83 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+.. ....+++++.+..
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5678999999 56788888889999988763 3445666665543
No 463
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00025 Score=54.30 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=31.3
Q ss_pred HHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHhCCCCccc
Q 021937 66 DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM 106 (305)
Q Consensus 66 ~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~ 106 (305)
+......++..+.|+|.+|+||||+|.++.+.+...++...
T Consensus 15 r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 15 REALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 33444444445899999999999999999999977766443
No 464
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.43 E-value=0.00022 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Q 021937 74 LPHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 74 ~~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+..++|+|++|+||||+++.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999997
No 465
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00043 Score=56.22 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=31.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 5678999999 567788888889998887532 445666666543
No 466
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.42 E-value=0.0003 Score=59.02 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=44.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeec-----CC---CcChhHHHHHHHHhhhcccccCCCCCceEEEE
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNA-----SD---DRGIDVVRQQIQDFASTQSFSFGVKASVKLVL 146 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~vli 146 (305)
|.++|+|.||+|||++++.+...+...+....++.-.. .. .......+..+........ .+..+||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l------s~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL------SKDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH------TT-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh------ccCeEEE
Confidence 56899999999999999999999876554443333111 11 1112233333333222211 1147999
Q ss_pred EeCCCcCCHHHHHHHHHHHHHhc
Q 021937 147 LDEADAMTKDAQFALRRVIEKYT 169 (305)
Q Consensus 147 iDe~~~l~~~~~~~l~~~l~~~~ 169 (305)
+|+..++. ...-.|+.+-....
T Consensus 76 ~Dd~nYiK-g~RYelyclAr~~~ 97 (270)
T PF08433_consen 76 LDDNNYIK-GMRYELYCLARAYG 97 (270)
T ss_dssp E-S---SH-HHHHHHHHHHHHTT
T ss_pred EeCCchHH-HHHHHHHHHHHHcC
Confidence 99988775 34455666555543
No 467
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.0016 Score=52.41 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=31.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-CCceEEEEecCC
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-KNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~~~~iil~~~~~ 181 (305)
.++.++++|| ...++......+.+++.+.. ....+|+++...
T Consensus 144 ~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 144 SKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187 (200)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 5678999999 56778888888999888753 345566666554
No 468
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.41 E-value=0.002 Score=49.69 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARK 97 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~ 97 (305)
+++.|.+|+|||+++..+...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999888754
No 469
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0015 Score=53.27 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc-C-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT-K-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~-~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+.. . ...+++++.+..
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 5678999999 56788888889999887653 2 455666666543
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.41 E-value=0.0014 Score=60.16 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEE
Q 021937 63 DTIDRLTSENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQYHNMILE 109 (305)
Q Consensus 63 ~~l~~~l~~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 109 (305)
..|...+.++-++. +++.||||+|||+++..++......+....++.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46677777764444 899999999999999999887755544444443
No 471
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.41 E-value=0.0015 Score=53.40 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=32.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 5678999999 577888888899999887643 345666666543
No 472
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.0039 Score=52.29 Aligned_cols=91 Identities=25% Similarity=0.377 Sum_probs=51.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHHHHHHHhhhccccc--C--------------CC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFS--F--------------GV 138 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~--------------~~ 138 (305)
..+.++|++|+|||+++..++..+...+....++..+... .....+ +........+. . ..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r---i~~~~q-l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQ-LQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC---HHHHHH-HHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 5689999999999999999998875444444444433222 122211 11111111000 0 01
Q ss_pred CCceEEEEEeCCCcCC--HHHHHHHHHHHHHhc
Q 021937 139 KASVKLVLLDEADAMT--KDAQFALRRVIEKYT 169 (305)
Q Consensus 139 ~~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~ 169 (305)
..+..+++||-..+.. ......+..+++...
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~ 184 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVE 184 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC
Confidence 1246889999887774 445566666665443
No 473
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.41 E-value=0.0089 Score=45.58 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=65.6
Q ss_pred ECCCCCcHHHHHHHHHHHHhCCCCcccEEEeecCCCcChhHHH-HHHHHhhhcccccCCCCCceEEEEEeCCCcCCHHHH
Q 021937 80 YGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR-QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQ 158 (305)
Q Consensus 80 ~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 158 (305)
.+..||||||++.++.+.+..++ .+.=+.........+. ..+..+.. ....++|.|-=..... ..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wg----HvQnDnI~~k~~~~f~~~~l~~L~~---------~~~~vViaDRNNh~~r-eR 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWG----HVQNDNITGKRKPKFIKAVLELLAK---------DTHPVVIADRNNHQKR-ER 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCC----ccccCCCCCCCHHHHHHHHHHHHhh---------CCCCEEEEeCCCchHH-HH
Confidence 57899999999999999873211 1111111111223332 23333311 1257999997665543 45
Q ss_pred HHHHHHHHHhcC-------CceEEEEecCC-c---cc----chhhhcce---eEEEecCCCHHHHHHHHHHHHHHc
Q 021937 159 FALRRVIEKYTK-------NTRFALICNQV-N---KI----IPALQSRC---TRFRFAPLEPVHVTERLKHVIEAE 216 (305)
Q Consensus 159 ~~l~~~l~~~~~-------~~~iil~~~~~-~---~l----~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~ 216 (305)
+.|+..++.... +.++|...=.. . .+ ..++..|+ +.+............+++..+.+.
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 566666665443 55555544111 1 11 12333444 556666666666777776666544
No 474
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.40 E-value=0.0037 Score=53.62 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=31.5
Q ss_pred ccCCCCCceEEEEEeCCCcCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 021937 134 FSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180 (305)
Q Consensus 134 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~ 180 (305)
+..++.-+...|||||++.+.+... ..++-+....++|+++++.
T Consensus 344 ~IRGRSl~~~FiIIDEaQNLTphei---kTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 344 YIRGRSLPDSFIIIDEAQNLTPHEL---KTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred eecccccccceEEEehhhccCHHHH---HHHHHhccCCCEEEEcCCH
Confidence 3345555678999999999997654 4455556667888888753
No 475
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.40 E-value=0.0026 Score=52.90 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=47.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCcccchhhhcceeEE------EecCCCHHHHHHHHH
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVNKIIPALQSRCTRF------RFAPLEPVHVTERLK 210 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~~l~~~l~~r~~~i------~~~~~~~~~~~~~l~ 210 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+... ...+..|...+ .-..-+...+.+.+.
T Consensus 132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~-~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~ 210 (246)
T cd03237 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM-IDYLADRLIVFEGEPSVNGVANPPQSLRSGMN 210 (246)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEcCCCeeEEEeCCchHHHHHHH
Confidence 5678999999 567788888888888876532 4556666655432 23333333221 001112233445666
Q ss_pred HHHHHcCCCCCH
Q 021937 211 HVIEAEGLDVTE 222 (305)
Q Consensus 211 ~~~~~~~~~~~~ 222 (305)
..+...++.+..
T Consensus 211 ~~l~~~~~~~~~ 222 (246)
T cd03237 211 RFLKNLDITFRR 222 (246)
T ss_pred HHHHHCCCEEec
Confidence 666666665543
No 476
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.39 E-value=0.0022 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
+++.||+|+|||+++..+++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999999987
No 477
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.39 E-value=0.00086 Score=57.56 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=36.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcCCceEEEEecCCcccchhhhcce
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRC 192 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~~~l~~~l~~r~ 192 (305)
.++.++++|| ...++......+.+++.+......+++++..... ...+..|+
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~-~~~~~d~i 202 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE-VEAICDRV 202 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH-HHHhCCEE
Confidence 6678999999 5778888888999999887655556666655432 23344443
No 478
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.38 E-value=0.0018 Score=55.60 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=27.7
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 64 TIDRLTS-ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 64 ~l~~~l~-~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
.|...+. ++-++. ..++||+|+|||+++..++......+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g 83 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLG 83 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4555555 443333 78999999999999999887764443
No 479
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.38 E-value=0.00069 Score=63.87 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=31.7
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
.++.++++||+ -.++.+....+.+.+.+..++..+|+++.+.
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 56789999996 4577777888888888775566667777665
No 480
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.37 E-value=0.0005 Score=65.30 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=32.2
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcCCceEEEEecCC
Q 021937 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTKNTRFALICNQV 181 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~iil~~~~~ 181 (305)
.++.|+++||+ -.++.+....+.+.+.+...+..+|+++.+.
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 67889999996 4567777788888888776666677777664
No 481
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00061 Score=56.33 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=31.2
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 5678999999 567888888888888876543 455666665543
No 482
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0009 Score=55.51 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=31.4
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5678999999 467788888899998887643 345666665543
No 483
>PRK09354 recA recombinase A; Provisional
Probab=97.37 E-value=0.0021 Score=55.66 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHHhCCC
Q 021937 64 TIDRLTS-ENRLPH--LLLYGPPGTGKTSTILAVARKLYGAQ 102 (305)
Q Consensus 64 ~l~~~l~-~~~~~~--~ll~G~~G~GKT~l~~~l~~~~~~~~ 102 (305)
.|...+. ++-+.. ..|+||+|+|||+++..++......+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G 88 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAG 88 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4555565 443333 78999999999999999887664443
No 484
>PRK13764 ATPase; Provisional
Probab=97.37 E-value=0.00074 Score=62.62 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHHhCC
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKLYGA 101 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 101 (305)
.+++++||+|+||||++++++..+...
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~ 284 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADM 284 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 459999999999999999999988643
No 485
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.36 E-value=0.0017 Score=55.81 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Q 021937 59 RDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 99 (305)
Q Consensus 59 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 99 (305)
++..+.|..++... .+++++|++|+||||++++++..+.
T Consensus 131 ~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 131 EAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 33445666666654 3599999999999999999999873
No 486
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.36 E-value=0.00097 Score=55.25 Aligned_cols=44 Identities=16% Similarity=0.396 Sum_probs=32.1
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCcc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVNK 183 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~~ 183 (305)
.++.++++|| ...++......+.+++.+... ...+|+++.+...
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 5678999999 566788888888888876643 4556667666543
No 487
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.36 E-value=0.00069 Score=55.03 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=31.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5678999999 566788888889999887642 456666666543
No 488
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.35 E-value=0.0023 Score=52.90 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=33.3
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc--CCceEEEEecCCccc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT--KNTRFALICNQVNKI 184 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~--~~~~iil~~~~~~~l 184 (305)
.++.++++|| ...++......+.+++.+.. ....+++++.+...+
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI 196 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH
Confidence 5678999999 56688888888988888764 245677777665544
No 489
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.35 E-value=0.0021 Score=51.44 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=30.5
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHh-cCCceEEEEecCCc
Q 021937 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKY-TKNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~iil~~~~~~ 182 (305)
.++.++++||. ..++......+.+++... .....+++++.+..
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 56789999995 577788888888888643 23455666666554
No 490
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.34 E-value=0.0034 Score=48.68 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=17.6
Q ss_pred CeEEEECCCCCcHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVA 95 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~ 95 (305)
.++++.||+|+|||..+...+
T Consensus 15 ~~~li~aptGsGKT~~~~~~~ 35 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPA 35 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHH
Confidence 459999999999999877444
No 491
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.34 E-value=0.0021 Score=54.01 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=30.5
Q ss_pred CceEEEEEeCC-CcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDEA-DAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++||. ..++......+.+++.+... ...+|+++....
T Consensus 160 ~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~ 204 (264)
T PRK13546 160 VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG 204 (264)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 56789999994 57778888888888876543 345666665543
No 492
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.0022 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Q 021937 75 PHLLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 75 ~~~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
..+++.||+||||||+.+.++-..
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCc
Confidence 348999999999999999998866
No 493
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.0021 Score=53.77 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhc--CCceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYT--KNTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~--~~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+.. ....+|+++.+..
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5678999999 56788888889999888752 2455666766543
No 494
>PRK07667 uridine kinase; Provisional
Probab=97.34 E-value=0.00057 Score=54.60 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
+.|.|++|+||||+++.++..+...+.+..++..+
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 68999999999999999999986655554455544
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0008 Score=55.55 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=31.7
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 5678999999 567888888888888887543 345666666544
No 496
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.0026 Score=53.93 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=33.6
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCccc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVNKI 184 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~~l 184 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+...+
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV 204 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 5678999999 567788888889898887643 45677777665544
No 497
>PRK05973 replicative DNA helicase; Provisional
Probab=97.33 E-value=0.0038 Score=51.19 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhCCCCcccEEEee
Q 021937 77 LLLYGPPGTGKTSTILAVARKLYGAQYHNMILELN 111 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 111 (305)
++|.|+||+|||+++..++......+....++.+.
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 89999999999999999887765445444444443
No 498
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00078 Score=54.60 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=31.5
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC--CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK--NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~--~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 5678999999 566788888899998887542 345666665543
No 499
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.00019 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 021937 77 LLLYGPPGTGKTSTILAVARKL 98 (305)
Q Consensus 77 ~ll~G~~G~GKT~l~~~l~~~~ 98 (305)
++|.|++|+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999985
No 500
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.33 E-value=0.00064 Score=54.86 Aligned_cols=43 Identities=9% Similarity=0.215 Sum_probs=31.9
Q ss_pred CceEEEEEeC-CCcCCHHHHHHHHHHHHHhcC-CceEEEEecCCc
Q 021937 140 ASVKLVLLDE-ADAMTKDAQFALRRVIEKYTK-NTRFALICNQVN 182 (305)
Q Consensus 140 ~~~~vliiDe-~~~l~~~~~~~l~~~l~~~~~-~~~iil~~~~~~ 182 (305)
.++.++++|| ...++......+.+++.+... ...+++++.+..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6678999999 567788888899998887543 455666666543
Done!